Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064710 | sp|O22797|GLTP1_ARATH | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.89e-107 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064710 | A0A072VI06 | 97.156 | 211 | 6 | 0 | 1 | 211 | 1 | 211 | 1.04e-151 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004660 | Msa0064710 | 0.866825 | 2.147645e-65 | -8.615850e-47 |
| Msa0064710 | Msa0155890 | 0.822060 | 2.898721e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064710 | MtrunA17_Chr1g0166501 | 93.365 | 211 | 5 | 1 | 1 | 211 | 1 | 202 | 1.70e-146 | 405 |
| Msa0064710 | MtrunA17_Chr1g0187451 | 79.147 | 211 | 35 | 1 | 1 | 211 | 1 | 202 | 2.49e-124 | 349 |
| Msa0064710 | MtrunA17_Chr1g0187431 | 66.250 | 160 | 32 | 1 | 46 | 205 | 1 | 138 | 9.04e-73 | 217 |
| Msa0064710 | MtrunA17_Chr1g0159211 | 31.818 | 198 | 121 | 2 | 19 | 211 | 35 | 223 | 1.81e-33 | 119 |
| Msa0064710 | MtrunA17_Chr3g0126121 | 34.722 | 216 | 119 | 6 | 9 | 211 | 16 | 222 | 2.00e-32 | 117 |
| Msa0064710 | MtrunA17_Chr1g0159221 | 31.472 | 197 | 122 | 2 | 19 | 211 | 36 | 223 | 3.66e-32 | 116 |
| Msa0064710 | MtrunA17_Chr1g0187441 | 57.143 | 49 | 21 | 0 | 1 | 49 | 16 | 64 | 9.18e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064710 | AT2G33470.2 | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.95e-108 | 309 |
| Msa0064710 | AT2G33470.1 | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.95e-108 | 309 |
| Msa0064710 | AT1G21360.1 | 32.323 | 198 | 121 | 2 | 17 | 210 | 34 | 222 | 3.40e-32 | 116 |
| Msa0064710 | AT3G21260.3 | 31.696 | 224 | 127 | 3 | 4 | 210 | 18 | 232 | 3.58e-32 | 117 |
| Msa0064710 | AT1G21360.2 | 31.953 | 169 | 102 | 2 | 46 | 210 | 1 | 160 | 1.69e-26 | 100 |
| Msa0064710 | AT1G21360.3 | 36.364 | 132 | 84 | 0 | 17 | 148 | 34 | 165 | 8.49e-24 | 94.0 |
| Msa0064710 | AT3G21260.2 | 32.051 | 156 | 93 | 2 | 59 | 210 | 2 | 148 | 2.57e-22 | 89.0 |
| Msa0064710 | AT3G21260.1 | 30.921 | 152 | 92 | 2 | 63 | 210 | 1 | 143 | 3.46e-20 | 83.2 |
Find 73 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAGAATCACAAATTTC+TGG | 0.181913 | 1_2:+26011376 | Msa0064710:CDS |
| AATTCTGACCAAACATTTCT+TGG | 0.187251 | 1_2:+26007973 | Msa0064710:CDS |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1_2:+26010319 | Msa0064710:intron |
| TTTCTTTGTCCGTTTGCTTT+TGG | 0.271676 | 1_2:-26006653 | None:intergenic |
| AGTAATTTACTCTATATCTT+AGG | 0.284154 | 1_2:-26012412 | None:intergenic |
| GTTGTACCAATGGACTTCTT+TGG | 0.295273 | 1_2:+26009478 | Msa0064710:CDS |
| TATAGCAGAAAACAGATTAA+TGG | 0.308420 | 1_2:-26012288 | None:intergenic |
| TCTGCTATACCTTAAAATCT+TGG | 0.317631 | 1_2:+26012302 | Msa0064710:three_prime_UTR |
| AAACAGATTAATGGAACTTC+TGG | 0.319365 | 1_2:-26012279 | None:intergenic |
| ATCAACTAGCATGATAAATA+AGG | 0.329752 | 1_2:+26012165 | Msa0064710:three_prime_UTR |
| TGAACATATGCATCAACTTC+TGG | 0.339330 | 1_2:+26006620 | Msa0064710:five_prime_UTR |
| ATTTATCATGCTAGTTGATC+TGG | 0.344900 | 1_2:-26012161 | None:intergenic |
| GAAATTTGTGATTCTGTTCA+AGG | 0.350751 | 1_2:-26011373 | None:intergenic |
| TACAGGATATTAAATCTTGA+TGG | 0.357701 | 1_2:-26009405 | None:intergenic |
| CTCTGAAGAAGTGGCATGGC+TGG | 0.367597 | 1_2:+26010417 | Msa0064710:CDS |
| ATGTGTACATACAGACTATA+AGG | 0.384617 | 1_2:-26006756 | None:intergenic |
| CAGAGCAATGGATTTCTTGG+TGG | 0.402509 | 1_2:+26010322 | Msa0064710:intron |
| ATTTAATATCCTGTACAGTT+TGG | 0.405220 | 1_2:+26009413 | Msa0064710:CDS |
| TCCATGAACTTCTTCCTGTC+TGG | 0.406955 | 1_2:-26011284 | None:intergenic |
| CATGAGAATGCACCTATAAC+AGG | 0.411237 | 1_2:-26008016 | None:intergenic |
| TATGTCAGCATTGATATTAC+CGG | 0.417187 | 1_2:-26011321 | None:intergenic |
| AGACACATATTGCCTGTTAT+AGG | 0.427381 | 1_2:+26008004 | Msa0064710:CDS |
| GATATTAAATCTTGATGGAT+TGG | 0.428467 | 1_2:-26009400 | None:intergenic |
| ATACCTTAAAATCTTGGTAA+TGG | 0.437189 | 1_2:+26012308 | Msa0064710:three_prime_UTR |
| AAGAAGTTCATGGAGGTGAT+AGG | 0.440267 | 1_2:+26011293 | Msa0064710:CDS |
| CCATGCAAGAGTCACTCATT+AGG | 0.442412 | 1_2:-26012046 | None:intergenic |
| GACTGTCTTCGGTCCTGCAT+TGG | 0.450495 | 1_2:+26007916 | Msa0064710:CDS |
| AAAATGGAGGGGACTGTCTT+CGG | 0.450511 | 1_2:+26007905 | Msa0064710:exon |
| ACTATAAGGAATGGCGAGAA+TGG | 0.458326 | 1_2:-26006742 | None:intergenic |
| TCAAAATTTGATTGAGCATG+AGG | 0.473764 | 1_2:+26010352 | Msa0064710:CDS |
| GTTGTAAAGAGTAAAATTAG+TGG | 0.473891 | 1_2:-26012203 | None:intergenic |
| GCACGAATCCAAGAAATGTT+TGG | 0.476765 | 1_2:-26007981 | None:intergenic |
| CTTGTTGTATGCATCTGTAC+AGG | 0.481715 | 1_2:-26010393 | None:intergenic |
| GCATTCAAGAGCCTCTCATC+AGG | 0.492692 | 1_2:-26012086 | None:intergenic |
| TTTCAAGTTGGATGATATGA+AGG | 0.496965 | 1_2:+26011987 | Msa0064710:CDS |
| TGAACCAGTGTAACTCTAGC+AGG | 0.509262 | 1_2:-26012342 | None:intergenic |
| TCATGAAGCTTGCTCCAGAC+AGG | 0.518872 | 1_2:+26011270 | Msa0064710:CDS |
| ATTTGATTGAGCATGAGGAT+TGG | 0.522782 | 1_2:+26010357 | Msa0064710:CDS |
| TGATGTGATGAGATCAGAAT+CGG | 0.523136 | 1_2:-26006701 | None:intergenic |
| CCTGAAAATCTTCAGAGCAA+TGG | 0.523996 | 1_2:+26010310 | Msa0064710:intron |
| CACCTATGTCAGATTTAACA+AGG | 0.530234 | 1_2:-26008806 | None:intergenic |
| TGTTGGAGTTCTTCCAATGC+AGG | 0.534376 | 1_2:-26007929 | None:intergenic |
| GGCGCAGGCGCGTTTCAAGT+TGG | 0.536301 | 1_2:+26011975 | Msa0064710:intron |
| CTTGCTCAGACTTTACATGT+TGG | 0.536360 | 1_2:-26007946 | None:intergenic |
| CTACTTGTACCAAACTGTAC+AGG | 0.540947 | 1_2:-26009422 | None:intergenic |
| ATGGACTTCTTTGGCTAACA+AGG | 0.540969 | 1_2:+26009487 | Msa0064710:CDS |
| TCCAGACAGGAAGAAGTTCA+TGG | 0.547330 | 1_2:+26011283 | Msa0064710:CDS |
| TAATCCTGCTAGAGTTACAC+TGG | 0.551572 | 1_2:+26012338 | Msa0064710:three_prime_UTR |
| GTGACTCTTGCATGGAATCA+TGG | 0.552779 | 1_2:+26012054 | Msa0064710:three_prime_UTR |
| TAAGGAATGGCGAGAATGGA+GGG | 0.554817 | 1_2:-26006738 | None:intergenic |
| TCTGTACAGGCTTGTGACAT+TGG | 0.558578 | 1_2:-26010380 | None:intergenic |
| ACCGCGTAACCAAAAGCAAA+CGG | 0.561032 | 1_2:+26006644 | Msa0064710:five_prime_UTR |
| ACAACAAGACTCTGAAGAAG+TGG | 0.563236 | 1_2:+26010408 | Msa0064710:CDS |
| CCTAATGAGTGACTCTTGCA+TGG | 0.565001 | 1_2:+26012046 | Msa0064710:three_prime_UTR |
| AGTAGTTTACTGTGAAGCTA+AGG | 0.565240 | 1_2:+26012253 | Msa0064710:three_prime_UTR |
| TTGTGATTCTGTTCAAGGAG+AGG | 0.566782 | 1_2:-26011368 | None:intergenic |
| TCATCATCAAGTTGTACCAA+TGG | 0.567007 | 1_2:+26009468 | Msa0064710:CDS |
| TGACATAGGTGGTAATATAA+CGG | 0.567236 | 1_2:+26008818 | Msa0064710:CDS |
| TGTTAGCCAAAGAAGTCCAT+TGG | 0.573467 | 1_2:-26009484 | None:intergenic |
| ATAAGGAATGGCGAGAATGG+AGG | 0.575933 | 1_2:-26006739 | None:intergenic |
| TACATACAGACTATAAGGAA+TGG | 0.603573 | 1_2:-26006751 | None:intergenic |
| ATGGAGGTGATAGGAGGCAC+CGG | 0.606188 | 1_2:+26011302 | Msa0064710:CDS |
| GGATGCCAAAGGTGAAAACA+TGG | 0.612235 | 1_2:-26012140 | None:intergenic |
| AAGTTCATGGAGGTGATAGG+AGG | 0.623302 | 1_2:+26011296 | Msa0064710:CDS |
| ACCCTTGTTAAATCTGACAT+AGG | 0.626109 | 1_2:+26008804 | Msa0064710:CDS |
| GGTCAGAAGTTCCTGATGAG+AGG | 0.626675 | 1_2:+26012075 | Msa0064710:three_prime_UTR |
| AAGACTCTGAAGAAGTGGCA+TGG | 0.632909 | 1_2:+26010413 | Msa0064710:CDS |
| CAACATGTAAAGTCTGAGCA+AGG | 0.650058 | 1_2:+26007947 | Msa0064710:CDS |
| CTTGTTAAATCTGACATAGG+TGG | 0.650482 | 1_2:+26008807 | Msa0064710:CDS |
| ATGAATCACAGATTCATGCA+TGG | 0.662684 | 1_2:+26012014 | Msa0064710:exon |
| CTAGTTGATCTGGATGCCAA+AGG | 0.684952 | 1_2:-26012151 | None:intergenic |
| ACCTATGTCAGATTTAACAA+GGG | 0.688070 | 1_2:-26008805 | None:intergenic |
| AGACAGGAAGAAGTTCATGG+AGG | 0.779343 | 1_2:+26011286 | Msa0064710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATAAATTTAAGAATT+TGG | - | chr1_2:26007601-26007620 | None:intergenic | 10.0% |
| !! | TCTTAAATTTATATGTTATA+AGG | + | chr1_2:26007604-26007623 | Msa0064710:intron | 10.0% |
| !!! | ATTTTCAAAATATTGTTTTT+GGG | - | chr1_2:26011725-26011744 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAATATTGTTTT+TGG | - | chr1_2:26011726-26011745 | None:intergenic | 10.0% |
| !!! | TTGTTAAATTTTGAATCTTT+TGG | + | chr1_2:26006826-26006845 | Msa0064710:intron | 15.0% |
| !!! | TTTTGGAAAATTTATCAAAT+GGG | + | chr1_2:26006843-26006862 | Msa0064710:intron | 15.0% |
| !!! | AGTTCTGTTTTTTTTTTTTT+AGG | + | chr1_2:26006979-26006998 | Msa0064710:intron | 15.0% |
| !!! | TGTTTTTTTTTTTTTAGGAA+AGG | + | chr1_2:26006984-26007003 | Msa0064710:intron | 15.0% |
| !!! | GAAAATTATTTTAAGCTTTT+AGG | + | chr1_2:26007052-26007071 | Msa0064710:intron | 15.0% |
| !!! | TCTTTGTATGATATTATTTT+TGG | + | chr1_2:26007492-26007511 | Msa0064710:intron | 15.0% |
| !!! | AATGATTTTTTAGCTAATAA+AGG | - | chr1_2:26007550-26007569 | None:intergenic | 15.0% |
| !! | ATTGAACATAAATTAACTAA+AGG | - | chr1_2:26007574-26007593 | None:intergenic | 15.0% |
| !!! | TTTTTTATGACAGATAAATT+TGG | + | chr1_2:26008771-26008790 | Msa0064710:intron | 15.0% |
| !!! | TTAACTTTTCATACAATTAT+TGG | + | chr1_2:26009278-26009297 | Msa0064710:intron | 15.0% |
| !! | TCATATTCTTAATTCTTATT+TGG | + | chr1_2:26010026-26010045 | Msa0064710:intron | 15.0% |
| !! | AATAACAATAATATAAGCTA+AGG | - | chr1_2:26010062-26010081 | None:intergenic | 15.0% |
| !! | ATTCATACAATAACTAATAA+GGG | - | chr1_2:26010634-26010653 | None:intergenic | 15.0% |
| !! | TAACATTTCAAAAAATATAC+AGG | + | chr1_2:26011531-26011550 | Msa0064710:intron | 15.0% |
| !!! | TTTTCAAAATATTGTTTTTG+GGG | - | chr1_2:26011724-26011743 | None:intergenic | 15.0% |
| !!! | CTTTTGGAAAATTTATCAAA+TGG | + | chr1_2:26006842-26006861 | Msa0064710:intron | 20.0% |
| !!! | AACTTAATTTATTTTCGTGT+TGG | - | chr1_2:26007107-26007126 | None:intergenic | 20.0% |
| !! | ATTAATCTCTATATCCTTAA+TGG | - | chr1_2:26007369-26007388 | None:intergenic | 20.0% |
| !!! | TTTGGATACTTGAATTTTAA+CGG | + | chr1_2:26007643-26007662 | Msa0064710:intron | 20.0% |
| !!! | CAGATTTTTTTTTTCTTTCT+GGG | - | chr1_2:26008282-26008301 | None:intergenic | 20.0% |
| !!! | ACAGATTTTTTTTTTCTTTC+TGG | - | chr1_2:26008283-26008302 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAATCTGTG+TGG | + | chr1_2:26008284-26008303 | Msa0064710:intron | 20.0% |
| !! | AAATCATAATGTATATATCG+TGG | + | chr1_2:26008536-26008555 | Msa0064710:intron | 20.0% |
| !! | AACAAATGAACAATTAATCA+TGG | - | chr1_2:26008693-26008712 | None:intergenic | 20.0% |
| !! | GAAAAGTTAAATCATTAGAA+GGG | - | chr1_2:26009268-26009287 | None:intergenic | 20.0% |
| !! | TGAAAAGTTAAATCATTAGA+AGG | - | chr1_2:26009269-26009288 | None:intergenic | 20.0% |
| !! | AAAGTTAAATGAAAATTGCA+TGG | - | chr1_2:26009526-26009545 | None:intergenic | 20.0% |
| !! | TAGACGTAAAATACAATATA+TGG | + | chr1_2:26009724-26009743 | Msa0064710:intron | 20.0% |
| !! | ATAAAAGTGACAAAAAATTG+AGG | + | chr1_2:26009856-26009875 | Msa0064710:intron | 20.0% |
| !! | TAAAAGTGACAAAAAATTGA+GGG | + | chr1_2:26009857-26009876 | Msa0064710:intron | 20.0% |
| !!! | TATTCTTAATTCTTATTTGG+TGG | + | chr1_2:26010029-26010048 | Msa0064710:intron | 20.0% |
| !! | TTCATACAATAACTAATAAG+GGG | - | chr1_2:26010633-26010652 | None:intergenic | 20.0% |
| !! | CATTCATACAATAACTAATA+AGG | - | chr1_2:26010635-26010654 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr1_2:26010713-26010732 | None:intergenic | 20.0% |
| !!! | TTTCTAACTCAAATCTATTT+TGG | - | chr1_2:26011016-26011035 | None:intergenic | 20.0% |
| !! | TAAGATATCTCTAGTAATTT+CGG | + | chr1_2:26011399-26011418 | Msa0064710:intron | 20.0% |
| !!! | TTCAATTTTTACTTTGTATG+TGG | + | chr1_2:26011607-26011626 | Msa0064710:intron | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+GGG | + | chr1_2:26011608-26011627 | Msa0064710:intron | 20.0% |
| !! | TTATTATGATAGAAAGAAGA+TGG | + | chr1_2:26011667-26011686 | Msa0064710:intron | 20.0% |
| !!! | TATGCATTTTCAAATTGTTT+AGG | + | chr1_2:26011762-26011781 | Msa0064710:intron | 20.0% |
| !!! | ATGCATTTTCAAATTGTTTA+GGG | + | chr1_2:26011763-26011782 | Msa0064710:intron | 20.0% |
| !! | AGTAATTTACTCTATATCTT+AGG | - | chr1_2:26012415-26012434 | None:intergenic | 20.0% |
| ! | AAAAACATTGATCCATGAAA+AGG | - | chr1_2:26006804-26006823 | None:intergenic | 25.0% |
| ! | TATTTCTCAATTTCAGTTAC+TGG | + | chr1_2:26006873-26006892 | Msa0064710:intron | 25.0% |
| ! | ATTTCTCAATTTCAGTTACT+GGG | + | chr1_2:26006874-26006893 | Msa0064710:intron | 25.0% |
| !! | AATTTTGAACTTTGCATAGT+TGG | + | chr1_2:26007027-26007046 | Msa0064710:intron | 25.0% |
| ! | TAAATTAAGTTTAGCAGAGA+TGG | + | chr1_2:26007116-26007135 | Msa0064710:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+CGG | + | chr1_2:26007186-26007205 | Msa0064710:intron | 25.0% |
| ! | ATCACTTATAGTAGAAAAGA+TGG | + | chr1_2:26007211-26007230 | Msa0064710:intron | 25.0% |
| ! | AACAATAAGAGAAACCATTA+AGG | + | chr1_2:26007352-26007371 | Msa0064710:intron | 25.0% |
| ! | TGGTATTTGATAGAACATTA+TGG | + | chr1_2:26007405-26007424 | Msa0064710:intron | 25.0% |
| ! | GTTTAGCTAAAGTGTAAAAA+TGG | + | chr1_2:26007889-26007908 | Msa0064710:intron | 25.0% |
| ! | ATGAACTAGATACTTATAAG+TGG | - | chr1_2:26008583-26008602 | None:intergenic | 25.0% |
| !! | TAAGTATCTAGTTCATTATC+AGG | + | chr1_2:26008587-26008606 | Msa0064710:intron | 25.0% |
| !! | GTTACTAATAGAGTACTATA+AGG | - | chr1_2:26008671-26008690 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAAACTAAAG+AGG | + | chr1_2:26009242-26009261 | Msa0064710:intron | 25.0% |
| !!! | TATACCCATATTGATTTTCA+TGG | + | chr1_2:26009352-26009371 | Msa0064710:intron | 25.0% |
| !! | GATATTAAATCTTGATGGAT+TGG | - | chr1_2:26009403-26009422 | None:intergenic | 25.0% |
| ! | TACAGGATATTAAATCTTGA+TGG | - | chr1_2:26009408-26009427 | None:intergenic | 25.0% |
| ! | ATTTAATATCCTGTACAGTT+TGG | + | chr1_2:26009413-26009432 | Msa0064710:CDS | 25.0% |
| ! | TAGAACCTAATAATAAGCTA+AGG | - | chr1_2:26010245-26010264 | None:intergenic | 25.0% |
| ! | TGAAACAAGATTAAACAGTA+GGG | - | chr1_2:26010529-26010548 | None:intergenic | 25.0% |
| !! | TGTTTAATCTTGTTTCACAT+TGG | + | chr1_2:26010532-26010551 | Msa0064710:intron | 25.0% |
| ! | TCATACAATAACTAATAAGG+GGG | - | chr1_2:26010632-26010651 | None:intergenic | 25.0% |
| ! | AACTGTTTCATATAAGCTAT+AGG | + | chr1_2:26010798-26010817 | Msa0064710:intron | 25.0% |
| !! | AACTGAAAAGCACAAAAAAA+GGG | - | chr1_2:26011169-26011188 | None:intergenic | 25.0% |
| !! | TAACTGAAAAGCACAAAAAA+AGG | - | chr1_2:26011170-26011189 | None:intergenic | 25.0% |
| ! | AAGATATCTCTAGTAATTTC+GGG | + | chr1_2:26011400-26011419 | Msa0064710:intron | 25.0% |
| ! | AAATGCCATTAGAAAGTAAA+CGG | - | chr1_2:26011588-26011607 | None:intergenic | 25.0% |
| ! | ATCAACTAGCATGATAAATA+AGG | + | chr1_2:26012165-26012184 | Msa0064710:three_prime_UTR | 25.0% |
| ! | GTTGTAAAGAGTAAAATTAG+TGG | - | chr1_2:26012206-26012225 | None:intergenic | 25.0% |
| ! | TATAGCAGAAAACAGATTAA+TGG | - | chr1_2:26012291-26012310 | None:intergenic | 25.0% |
| ! | ATACCTTAAAATCTTGGTAA+TGG | + | chr1_2:26012308-26012327 | Msa0064710:three_prime_UTR | 25.0% |
| !! | ATTCCATTACCAAGATTTTA+AGG | - | chr1_2:26012314-26012333 | None:intergenic | 25.0% |
| TACATACAGACTATAAGGAA+TGG | - | chr1_2:26006754-26006773 | None:intergenic | 30.0% | |
| ATGTGTACATACAGACTATA+AGG | - | chr1_2:26006759-26006778 | None:intergenic | 30.0% | |
| ! | CTAATTCTTCTTCCTTTTCA+TGG | + | chr1_2:26006789-26006808 | Msa0064710:intron | 30.0% |
| TTGGTCCTAAAAAGTGAAAT+TGG | + | chr1_2:26006897-26006916 | Msa0064710:intron | 30.0% | |
| !!! | GGTTACCAATTTCACTTTTT+AGG | - | chr1_2:26006905-26006924 | None:intergenic | 30.0% |
| !! | TGTTTCATGTTTTTGTCAGT+TGG | + | chr1_2:26006956-26006975 | Msa0064710:intron | 30.0% |
| ACTTATAGTAGAAAAGATGG+TGG | + | chr1_2:26007214-26007233 | Msa0064710:intron | 30.0% | |
| GGATATAGAGATTAATGAGT+TGG | + | chr1_2:26007373-26007392 | Msa0064710:intron | 30.0% | |
| ! | TAATGAGTTGGATAGAGATA+TGG | + | chr1_2:26007385-26007404 | Msa0064710:intron | 30.0% |
| GGAGCAAGATAAGTAATATT+TGG | + | chr1_2:26007625-26007644 | Msa0064710:intron | 30.0% | |
| TACAGATTTGATCTTTGCTA+AGG | + | chr1_2:26007829-26007848 | Msa0064710:intron | 30.0% | |
| ACAGATTTGATCTTTGCTAA+GGG | + | chr1_2:26007830-26007849 | Msa0064710:intron | 30.0% | |
| GGATTGCTGATATATTTGTT+TGG | + | chr1_2:26007851-26007870 | Msa0064710:intron | 30.0% | |
| TAGCTAAAGTGTAAAAATGG+AGG | + | chr1_2:26007892-26007911 | Msa0064710:intron | 30.0% | |
| AGCTAAAGTGTAAAAATGGA+GGG | + | chr1_2:26007893-26007912 | Msa0064710:intron | 30.0% | |
| AATTCTGACCAAACATTTCT+TGG | + | chr1_2:26007973-26007992 | Msa0064710:CDS | 30.0% | |
| CACTGGAAAATGTCTAATAA+GGG | - | chr1_2:26008044-26008063 | None:intergenic | 30.0% | |
| ACACTGGAAAATGTCTAATA+AGG | - | chr1_2:26008045-26008064 | None:intergenic | 30.0% | |
| TCATAGTATTCATCATCACT+AGG | + | chr1_2:26008467-26008486 | Msa0064710:intron | 30.0% | |
| ACCTATGTCAGATTTAACAA+GGG | - | chr1_2:26008808-26008827 | None:intergenic | 30.0% | |
| TGACATAGGTGGTAATATAA+CGG | + | chr1_2:26008818-26008837 | Msa0064710:CDS | 30.0% | |
| TGTTCTTTCTGACTCATATT+TGG | + | chr1_2:26008856-26008875 | Msa0064710:intron | 30.0% | |
| !! | GTTCTGTTTGAGTTTTTATC+TGG | + | chr1_2:26008968-26008987 | Msa0064710:intron | 30.0% |
| ! | GTTTTCATAAAAGCTCTGTT+TGG | + | chr1_2:26008990-26009009 | Msa0064710:intron | 30.0% |
| TCTGCCATGAAAATCAATAT+GGG | - | chr1_2:26009359-26009378 | None:intergenic | 30.0% | |
| TATTAACTCAAGTGTGAAAC+CGG | + | chr1_2:26009614-26009633 | Msa0064710:intron | 30.0% | |
| GGAATGCAAATTCAATTAGA+CGG | + | chr1_2:26009745-26009764 | Msa0064710:intron | 30.0% | |
| ATTGTTACTGTTAGTGTTGT+TGG | + | chr1_2:26010181-26010200 | Msa0064710:intron | 30.0% | |
| CAAGACCTTAGCTTATTATT+AGG | + | chr1_2:26010237-26010256 | Msa0064710:intron | 30.0% | |
| CGTTCACGCTATATTATTTA+TGG | + | chr1_2:26010270-26010289 | Msa0064710:intron | 30.0% | |
| TCAAAATTTGATTGAGCATG+AGG | + | chr1_2:26010352-26010371 | Msa0064710:CDS | 30.0% | |
| GTGAAACAAGATTAAACAGT+AGG | - | chr1_2:26010530-26010549 | None:intergenic | 30.0% | |
| ATTCAGCCTCTTACATTATT+TGG | + | chr1_2:26010686-26010705 | Msa0064710:intron | 30.0% | |
| ! | TTCAGTTATTTGTTTCTCCA+AGG | + | chr1_2:26011182-26011201 | Msa0064710:intron | 30.0% |
| TATGGAACTGAATATGCATT+TGG | + | chr1_2:26011218-26011237 | Msa0064710:intron | 30.0% | |
| ATGGAACTGAATATGCATTT+GGG | + | chr1_2:26011219-26011238 | Msa0064710:intron | 30.0% | |
| ! | GTGTTGAATGTTTAACTTAC+AGG | + | chr1_2:26011244-26011263 | Msa0064710:intron | 30.0% |
| !! | TATGTCAGCATTGATATTAC+CGG | - | chr1_2:26011324-26011343 | None:intergenic | 30.0% |
| GAAATTTGTGATTCTGTTCA+AGG | - | chr1_2:26011376-26011395 | None:intergenic | 30.0% | |
| TGAACAGAATCACAAATTTC+TGG | + | chr1_2:26011376-26011395 | Msa0064710:CDS | 30.0% | |
| TGTATGTGAATGATGGTTAA+TGG | + | chr1_2:26011447-26011466 | Msa0064710:intron | 30.0% | |
| AATGCCATTAGAAAGTAAAC+GGG | - | chr1_2:26011587-26011606 | None:intergenic | 30.0% | |
| ACGTCATTGTCACATATTAA+GGG | - | chr1_2:26011827-26011846 | None:intergenic | 30.0% | |
| TGCAAGAAAAAACTGCTATT+TGG | - | chr1_2:26011933-26011952 | None:intergenic | 30.0% | |
| !! | TTTCAAGTTGGATGATATGA+AGG | + | chr1_2:26011987-26012006 | Msa0064710:CDS | 30.0% |
| ATTTATCATGCTAGTTGATC+TGG | - | chr1_2:26012164-26012183 | None:intergenic | 30.0% | |
| AAACAGATTAATGGAACTTC+TGG | - | chr1_2:26012282-26012301 | None:intergenic | 30.0% | |
| TCTGCTATACCTTAAAATCT+TGG | + | chr1_2:26012302-26012321 | Msa0064710:three_prime_UTR | 30.0% | |
| TGAACATATGCATCAACTTC+TGG | + | chr1_2:26006620-26006639 | Msa0064710:five_prime_UTR | 35.0% | |
| ! | TTTCTTTGTCCGTTTGCTTT+TGG | - | chr1_2:26006656-26006675 | None:intergenic | 35.0% |
| TGATGTGATGAGATCAGAAT+CGG | - | chr1_2:26006704-26006723 | None:intergenic | 35.0% | |
| ! | CACACACAGACAAGATTTTA+AGG | - | chr1_2:26006926-26006945 | None:intergenic | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+GGG | + | chr1_2:26007222-26007241 | Msa0064710:intron | 35.0% |
| GCATGTATAGAAAAGACATG+CGG | + | chr1_2:26007259-26007278 | Msa0064710:intron | 35.0% | |
| CATGTATAGAAAAGACATGC+GGG | + | chr1_2:26007260-26007279 | Msa0064710:intron | 35.0% | |
| ATGTATAGAAAAGACATGCG+GGG | + | chr1_2:26007261-26007280 | Msa0064710:intron | 35.0% | |
| ! | ATAAAGGCATGAGTCATTGA+AGG | - | chr1_2:26007534-26007553 | None:intergenic | 35.0% |
| ! | ACGCTTTTAATCCTAGATGT+CGG | - | chr1_2:26007687-26007706 | None:intergenic | 35.0% |
| GCTAAAGTGTAAAAATGGAG+GGG | + | chr1_2:26007894-26007913 | Msa0064710:intron | 35.0% | |
| AGACACATATTGCCTGTTAT+AGG | + | chr1_2:26008004-26008023 | Msa0064710:CDS | 35.0% | |
| TCCCTTCGTGAAACAAAAAA+GGG | - | chr1_2:26008073-26008092 | None:intergenic | 35.0% | |
| TTCCCTTCGTGAAACAAAAA+AGG | - | chr1_2:26008074-26008093 | None:intergenic | 35.0% | |
| !!! | TTTTAAGACACGTGTTGTAC+GGG | - | chr1_2:26008246-26008265 | None:intergenic | 35.0% |
| !!! | GTTTTAAGACACGTGTTGTA+CGG | - | chr1_2:26008247-26008266 | None:intergenic | 35.0% |
| TGTATATATCGTGGTCACTT+AGG | + | chr1_2:26008545-26008564 | Msa0064710:intron | 35.0% | |
| GGAGAAAAGATGTACAAAAC+AGG | + | chr1_2:26008608-26008627 | Msa0064710:intron | 35.0% | |
| TGATATGAATACTTGCCCTA+TGG | + | chr1_2:26008722-26008741 | Msa0064710:intron | 35.0% | |
| ACCCTTGTTAAATCTGACAT+AGG | + | chr1_2:26008804-26008823 | Msa0064710:CDS | 35.0% | |
| CACCTATGTCAGATTTAACA+AGG | - | chr1_2:26008809-26008828 | None:intergenic | 35.0% | |
| CTTGTTAAATCTGACATAGG+TGG | + | chr1_2:26008807-26008826 | Msa0064710:CDS | 35.0% | |
| ATAGCACGATACAGAAAAAG+AGG | - | chr1_2:26008930-26008949 | None:intergenic | 35.0% | |
| AAGCTATCGTGTTGAGTTTA+TGG | + | chr1_2:26009127-26009146 | Msa0064710:intron | 35.0% | |
| AAGAACTTGCAAGACTGTTT+GGG | - | chr1_2:26009206-26009225 | None:intergenic | 35.0% | |
| TAAGAACTTGCAAGACTGTT+TGG | - | chr1_2:26009207-26009226 | None:intergenic | 35.0% | |
| TAGAGTGAGAACGTATACAT+AGG | - | chr1_2:26009334-26009353 | None:intergenic | 35.0% | |
| CTCTGCCATGAAAATCAATA+TGG | - | chr1_2:26009360-26009379 | None:intergenic | 35.0% | |
| ! | TTGATTTTCATGGCAGAGAT+TGG | + | chr1_2:26009362-26009381 | Msa0064710:intron | 35.0% |
| ! | TCATCATCAAGTTGTACCAA+TGG | + | chr1_2:26009468-26009487 | Msa0064710:CDS | 35.0% |
| CATAAACACGAAACAAGTTC+AGG | - | chr1_2:26009650-26009669 | None:intergenic | 35.0% | |
| TCGTGTTTATGTCGAACAAA+TGG | + | chr1_2:26009659-26009678 | Msa0064710:intron | 35.0% | |
| TACTCAACTTATCTTCCTCA+AGG | + | chr1_2:26009982-26010001 | Msa0064710:intron | 35.0% | |
| ATTTGATTGAGCATGAGGAT+TGG | + | chr1_2:26010357-26010376 | Msa0064710:CDS | 35.0% | |
| TAGGAACATTCAAGAGATCT+AGG | - | chr1_2:26010558-26010577 | None:intergenic | 35.0% | |
| TAGATCTCTTGAATGTTCCT+AGG | + | chr1_2:26010557-26010576 | Msa0064710:intron | 35.0% | |
| TGCAATTCAATGCATTTCCT+AGG | - | chr1_2:26010577-26010596 | None:intergenic | 35.0% | |
| ACAGGACCAAATAATGTAAG+AGG | - | chr1_2:26010695-26010714 | None:intergenic | 35.0% | |
| AAGCTATAGGCTGTTTACAT+AGG | + | chr1_2:26010811-26010830 | Msa0064710:intron | 35.0% | |
| AGCTATAGGCTGTTTACATA+GGG | + | chr1_2:26010812-26010831 | Msa0064710:intron | 35.0% | |
| AGATTGTTTGGAAGAGCTTA+GGG | - | chr1_2:26010899-26010918 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1_2:26010911-26010930 | None:intergenic | 35.0% | |
| ! | GTTATTTGTTTCTCCAAGGA+TGG | + | chr1_2:26011186-26011205 | Msa0064710:intron | 35.0% |
| ATCATTCACATACATGCCAT+TGG | - | chr1_2:26011441-26011460 | None:intergenic | 35.0% | |
| AATGGCATGTATGTGAATGA+TGG | + | chr1_2:26011440-26011459 | Msa0064710:intron | 35.0% | |
| GTGAATGATGGTTAATGGTA+TGG | + | chr1_2:26011452-26011471 | Msa0064710:intron | 35.0% | |
| TTCCAGAAATGCATTCTCTT+CGG | - | chr1_2:26011700-26011719 | None:intergenic | 35.0% | |
| !! | TTTAGTTCTAACATTCGGGA+AGG | - | chr1_2:26011800-26011819 | None:intergenic | 35.0% |
| TCCCGAATGTTAGAACTAAA+CGG | + | chr1_2:26011800-26011819 | Msa0064710:intron | 35.0% | |
| GACGTCATTGTCACATATTA+AGG | - | chr1_2:26011828-26011847 | None:intergenic | 35.0% | |
| ACACGTTAACAGAAAGATGT+TGG | + | chr1_2:26011858-26011877 | Msa0064710:intron | 35.0% | |
| ! | GCTGACTAAACTTACTCTTT+TGG | + | chr1_2:26011954-26011973 | Msa0064710:intron | 35.0% |
| ATGAATCACAGATTCATGCA+TGG | + | chr1_2:26012014-26012033 | Msa0064710:exon | 35.0% | |
| ! | TGTATCCATGTTTTCACCTT+TGG | + | chr1_2:26012135-26012154 | Msa0064710:three_prime_UTR | 35.0% |
| AGTAGTTTACTGTGAAGCTA+AGG | + | chr1_2:26012253-26012272 | Msa0064710:three_prime_UTR | 35.0% | |
| ACTATAAGGAATGGCGAGAA+TGG | - | chr1_2:26006745-26006764 | None:intergenic | 40.0% | |
| CTCAATTTCAGTTACTGGGT+TGG | + | chr1_2:26006878-26006897 | Msa0064710:intron | 40.0% | |
| GTCATGTTGTGTTGGATTTG+TGG | + | chr1_2:26007138-26007157 | Msa0064710:intron | 40.0% | |
| GGATTTGTGGTAAGACTAGA+CGG | + | chr1_2:26007151-26007170 | Msa0064710:intron | 40.0% | |
| GATTTGTGGTAAGACTAGAC+GGG | + | chr1_2:26007152-26007171 | Msa0064710:intron | 40.0% | |
| !! | GTAGAAAAGATGGTGGAAAC+TGG | + | chr1_2:26007221-26007240 | Msa0064710:intron | 40.0% |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr1_2:26007291-26007310 | Msa0064710:intron | 40.0% | |
| ATGGATAGTCACATCACTAG+AGG | + | chr1_2:26007310-26007329 | Msa0064710:intron | 40.0% | |
| AATCACATGTGTCAGTAGTG+TGG | - | chr1_2:26007718-26007737 | None:intergenic | 40.0% | |
| TTGTTACGATGCCTTGTGTT+AGG | + | chr1_2:26007765-26007784 | Msa0064710:intron | 40.0% | |
| TGTTACGATGCCTTGTGTTA+GGG | + | chr1_2:26007766-26007785 | Msa0064710:intron | 40.0% | |
| ATGATACTGACCCTAACACA+AGG | - | chr1_2:26007779-26007798 | None:intergenic | 40.0% | |
| !! | ACAAAGCACTGACACAAACA+AGG | - | chr1_2:26007810-26007829 | None:intergenic | 40.0% |
| CTTGCTCAGACTTTACATGT+TGG | - | chr1_2:26007949-26007968 | None:intergenic | 40.0% | |
| CAACATGTAAAGTCTGAGCA+AGG | + | chr1_2:26007947-26007966 | Msa0064710:CDS | 40.0% | |
| GCACGAATCCAAGAAATGTT+TGG | - | chr1_2:26007984-26008003 | None:intergenic | 40.0% | |
| CATGAGAATGCACCTATAAC+AGG | - | chr1_2:26008019-26008038 | None:intergenic | 40.0% | |
| CTGTTATAGGTGCATTCTCA+TGG | + | chr1_2:26008017-26008036 | Msa0064710:intron | 40.0% | |
| ACAAAAAAGGGGAAACACAC+TGG | - | chr1_2:26008061-26008080 | None:intergenic | 40.0% | |
| !!! | TCCCCTTTTTTGTTTCACGA+AGG | + | chr1_2:26008068-26008087 | Msa0064710:intron | 40.0% |
| CCCTTCGTGAAACAAAAAAG+GGG | - | chr1_2:26008072-26008091 | None:intergenic | 40.0% | |
| !!! | CCCCTTTTTTGTTTCACGAA+GGG | + | chr1_2:26008069-26008088 | Msa0064710:intron | 40.0% |
| ATTAGGTGTGTTTCCATGTC+TGG | + | chr1_2:26008200-26008219 | Msa0064710:intron | 40.0% | |
| ! | TTTAAGACACGTGTTGTACG+GGG | - | chr1_2:26008245-26008264 | None:intergenic | 40.0% |
| !! | ATCTGTCCAAAGAGTGTCTA+AGG | - | chr1_2:26008315-26008334 | None:intergenic | 40.0% |
| GATGTACAAAACAGGATGAC+TGG | + | chr1_2:26008616-26008635 | Msa0064710:intron | 40.0% | |
| CTTCACTTCTTCTGACCATA+GGG | - | chr1_2:26008740-26008759 | None:intergenic | 40.0% | |
| TCTTCACTTCTTCTGACCAT+AGG | - | chr1_2:26008741-26008760 | None:intergenic | 40.0% | |
| CATATGCTATCTAGCAGCTT+TGG | + | chr1_2:26008897-26008916 | Msa0064710:intron | 40.0% | |
| CTACTTGTACCAAACTGTAC+AGG | - | chr1_2:26009425-26009444 | None:intergenic | 40.0% | |
| ! | GTTGTACCAATGGACTTCTT+TGG | + | chr1_2:26009478-26009497 | Msa0064710:CDS | 40.0% |
| TGTTAGCCAAAGAAGTCCAT+TGG | - | chr1_2:26009487-26009506 | None:intergenic | 40.0% | |
| ATGGACTTCTTTGGCTAACA+AGG | + | chr1_2:26009487-26009506 | Msa0064710:CDS | 40.0% | |
| ! | AAGTTCAGGCTTTGTCTTTC+CGG | - | chr1_2:26009636-26009655 | None:intergenic | 40.0% |
| ! | CACATGTAAACACTAGCTTG+TGG | + | chr1_2:26009774-26009793 | Msa0064710:intron | 40.0% |
| ! | CACTAGCTTGTGGTCAAAAT+TGG | + | chr1_2:26009784-26009803 | Msa0064710:intron | 40.0% |
| !!! | GCTCTGAAGATTTTCAGGTT+GGG | - | chr1_2:26010308-26010327 | None:intergenic | 40.0% |
| !!! | TGCTCTGAAGATTTTCAGGT+TGG | - | chr1_2:26010309-26010328 | None:intergenic | 40.0% |
| !!! | CCATTGCTCTGAAGATTTTC+AGG | - | chr1_2:26010313-26010332 | None:intergenic | 40.0% |
| CCTGAAAATCTTCAGAGCAA+TGG | + | chr1_2:26010310-26010329 | Msa0064710:intron | 40.0% | |
| ! | CTTCAGAGCAATGGATTTCT+TGG | + | chr1_2:26010319-26010338 | Msa0064710:intron | 40.0% |
| ! | CTTGTTGTATGCATCTGTAC+AGG | - | chr1_2:26010396-26010415 | None:intergenic | 40.0% |
| ! | ACAACAAGACTCTGAAGAAG+TGG | + | chr1_2:26010408-26010427 | Msa0064710:CDS | 40.0% |
| GCTAGAGAGCTTGTAGAAAT+AGG | + | chr1_2:26010838-26010857 | Msa0064710:intron | 40.0% | |
| GAGCTTAGGGAAACAACTTA+TGG | - | chr1_2:26010886-26010905 | None:intergenic | 40.0% | |
| GAGATTGTTTGGAAGAGCTT+AGG | - | chr1_2:26010900-26010919 | None:intergenic | 40.0% | |
| CATACACTCTTAACCATCCT+TGG | - | chr1_2:26011202-26011221 | None:intergenic | 40.0% | |
| ! | CAAGGATGGTTAAGAGTGTA+TGG | + | chr1_2:26011200-26011219 | Msa0064710:intron | 40.0% |
| AAGAAGTTCATGGAGGTGAT+AGG | + | chr1_2:26011293-26011312 | Msa0064710:CDS | 40.0% | |
| TTGTGATTCTGTTCAAGGAG+AGG | - | chr1_2:26011371-26011390 | None:intergenic | 40.0% | |
| ! | GTCTTATTGATGCTCACCAA+TGG | + | chr1_2:26011422-26011441 | Msa0064710:intron | 40.0% |
| TTACTTTGTATGTGGGTGAC+TGG | + | chr1_2:26011615-26011634 | Msa0064710:intron | 40.0% | |
| AACCGAAGAGAATGCATTTC+TGG | + | chr1_2:26011695-26011714 | Msa0064710:intron | 40.0% | |
| !! | CCCGTTTAGTTCTAACATTC+GGG | - | chr1_2:26011804-26011823 | None:intergenic | 40.0% |
| CCCGAATGTTAGAACTAAAC+GGG | + | chr1_2:26011801-26011820 | Msa0064710:intron | 40.0% | |
| !! | GCCCGTTTAGTTCTAACATT+CGG | - | chr1_2:26011805-26011824 | None:intergenic | 40.0% |
| ! | TAAACTTACTCTTTTGGCGC+AGG | + | chr1_2:26011960-26011979 | Msa0064710:intron | 40.0% |
| TAATCCTGCTAGAGTTACAC+TGG | + | chr1_2:26012338-26012357 | Msa0064710:three_prime_UTR | 40.0% | |
| ACCGCGTAACCAAAAGCAAA+CGG | + | chr1_2:26006644-26006663 | Msa0064710:five_prime_UTR | 45.0% | |
| !! | TCCGTTTGCTTTTGGTTACG+CGG | - | chr1_2:26006648-26006667 | None:intergenic | 45.0% |
| TAAGGAATGGCGAGAATGGA+GGG | - | chr1_2:26006741-26006760 | None:intergenic | 45.0% | |
| ATAAGGAATGGCGAGAATGG+AGG | - | chr1_2:26006742-26006761 | None:intergenic | 45.0% | |
| CAGAGATGGTCATGTTGTGT+TGG | + | chr1_2:26007130-26007149 | Msa0064710:intron | 45.0% | |
| !! | AGATGGTGGAAACTGGGATT+AGG | + | chr1_2:26007228-26007247 | Msa0064710:intron | 45.0% |
| CATGCGGGGATTCTATAGTA+AGG | + | chr1_2:26007275-26007294 | Msa0064710:intron | 45.0% | |
| AGTCACATCACTAGAGGTAG+AGG | + | chr1_2:26007316-26007335 | Msa0064710:intron | 45.0% | |
| CTTATCCCACTAACTGAGGT+TGG | - | chr1_2:26007454-26007473 | None:intergenic | 45.0% | |
| CAACCTCAGTTAGTGGGATA+AGG | + | chr1_2:26007452-26007471 | Msa0064710:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAACTG+AGG | - | chr1_2:26007458-26007477 | None:intergenic | 45.0% |
| TCAGTTAGTGGGATAAGGCT+TGG | + | chr1_2:26007457-26007476 | Msa0064710:intron | 45.0% | |
| GTTAGGGTCAGTATCATGTC+TGG | + | chr1_2:26007782-26007801 | Msa0064710:intron | 45.0% | |
| AAAATGGAGGGGACTGTCTT+CGG | + | chr1_2:26007905-26007924 | Msa0064710:exon | 45.0% | |
| TGTTGGAGTTCTTCCAATGC+AGG | - | chr1_2:26007932-26007951 | None:intergenic | 45.0% | |
| TCCACGCTTCATAGATGAGT+AGG | - | chr1_2:26008170-26008189 | None:intergenic | 45.0% | |
| GACACACCTTAGACACTCTT+TGG | + | chr1_2:26008306-26008325 | Msa0064710:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr1_2:26009195-26009214 | None:intergenic | 45.0% | |
| TTGAGGGAGATGCAAATTGC+TGG | + | chr1_2:26009873-26009892 | Msa0064710:intron | 45.0% | |
| !! | TTCCTCAAGGTGTTGAGTTG+AGG | + | chr1_2:26009995-26010014 | Msa0064710:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | + | chr1_2:26010322-26010341 | Msa0064710:intron | 45.0% |
| TCTGTACAGGCTTGTGACAT+TGG | - | chr1_2:26010383-26010402 | None:intergenic | 45.0% | |
| ! | AAGACTCTGAAGAAGTGGCA+TGG | + | chr1_2:26010413-26010432 | Msa0064710:CDS | 45.0% |
| GCGACAAAGGGAAAACTACA+TGG | - | chr1_2:26011128-26011147 | None:intergenic | 45.0% | |
| ! | GTAGTTTTCCCTTTGTCGCA+CGG | + | chr1_2:26011129-26011148 | Msa0064710:intron | 45.0% |
| TCCAGACAGGAAGAAGTTCA+TGG | + | chr1_2:26011283-26011302 | Msa0064710:CDS | 45.0% | |
| TCCATGAACTTCTTCCTGTC+TGG | - | chr1_2:26011287-26011306 | None:intergenic | 45.0% | |
| AGACAGGAAGAAGTTCATGG+AGG | + | chr1_2:26011286-26011305 | Msa0064710:CDS | 45.0% | |
| AAGTTCATGGAGGTGATAGG+AGG | + | chr1_2:26011296-26011315 | Msa0064710:CDS | 45.0% | |
| AGGGCCCGTTTACTTTCTAA+TGG | + | chr1_2:26011580-26011599 | Msa0064710:intron | 45.0% | |
| GTTGGTTGTATCGCAGAAAG+AGG | + | chr1_2:26011876-26011895 | Msa0064710:intron | 45.0% | |
| GTATCGCAGAAAGAGGTTTG+AGG | + | chr1_2:26011883-26011902 | Msa0064710:intron | 45.0% | |
| AGGCGGGCAATCTTATTCTT+AGG | + | chr1_2:26011903-26011922 | Msa0064710:intron | 45.0% | |
| GGCGGGCAATCTTATTCTTA+GGG | + | chr1_2:26011904-26011923 | Msa0064710:intron | 45.0% | |
| GCGGGCAATCTTATTCTTAG+GGG | + | chr1_2:26011905-26011924 | Msa0064710:intron | 45.0% | |
| CGGGCAATCTTATTCTTAGG+GGG | + | chr1_2:26011906-26011925 | Msa0064710:intron | 45.0% | |
| CCATGCAAGAGTCACTCATT+AGG | - | chr1_2:26012049-26012068 | None:intergenic | 45.0% | |
| CCTAATGAGTGACTCTTGCA+TGG | + | chr1_2:26012046-26012065 | Msa0064710:three_prime_UTR | 45.0% | |
| GTGACTCTTGCATGGAATCA+TGG | + | chr1_2:26012054-26012073 | Msa0064710:three_prime_UTR | 45.0% | |
| GGATGCCAAAGGTGAAAACA+TGG | - | chr1_2:26012143-26012162 | None:intergenic | 45.0% | |
| CTAGTTGATCTGGATGCCAA+AGG | - | chr1_2:26012154-26012173 | None:intergenic | 45.0% | |
| TGAACCAGTGTAACTCTAGC+AGG | - | chr1_2:26012345-26012364 | None:intergenic | 45.0% | |
| !! | CGTATGTAGCACCGACATCT+AGG | + | chr1_2:26007673-26007692 | Msa0064710:intron | 50.0% |
| GCCTACTCATCTATGAAGCG+TGG | + | chr1_2:26008166-26008185 | Msa0064710:intron | 50.0% | |
| CTATGAAGCGTGGACACTTC+TGG | + | chr1_2:26008176-26008195 | Msa0064710:intron | 50.0% | |
| !! | GCGTGGACACTTCTGGAATT+AGG | + | chr1_2:26008183-26008202 | Msa0064710:intron | 50.0% |
| TGCCTCAACTCAACACCTTG+AGG | - | chr1_2:26010000-26010019 | None:intergenic | 50.0% | |
| ! | TCATGAAGCTTGCTCCAGAC+AGG | + | chr1_2:26011270-26011289 | Msa0064710:CDS | 50.0% |
| TCGCAGAAAGAGGTTTGAGG+CGG | + | chr1_2:26011886-26011905 | Msa0064710:intron | 50.0% | |
| GGTCAGAAGTTCCTGATGAG+AGG | + | chr1_2:26012075-26012094 | Msa0064710:three_prime_UTR | 50.0% | |
| GCATTCAAGAGCCTCTCATC+AGG | - | chr1_2:26012089-26012108 | None:intergenic | 50.0% | |
| ! | ACTGAGGTTGGCTGGCTACA+TGG | - | chr1_2:26007442-26007461 | None:intergenic | 55.0% |
| AGCCAGCCAACCTCAGTTAG+TGG | + | chr1_2:26007445-26007464 | Msa0064710:intron | 55.0% | |
| GCCAGCCAACCTCAGTTAGT+GGG | + | chr1_2:26007446-26007465 | Msa0064710:intron | 55.0% | |
| TCCCACTAACTGAGGTTGGC+TGG | - | chr1_2:26007450-26007469 | None:intergenic | 55.0% | |
| GACTGTCTTCGGTCCTGCAT+TGG | + | chr1_2:26007916-26007935 | Msa0064710:CDS | 55.0% | |
| ACATCGACGTGTGCCAGACA+TGG | - | chr1_2:26008216-26008235 | None:intergenic | 55.0% | |
| ! | CTCTGAAGAAGTGGCATGGC+TGG | + | chr1_2:26010417-26010436 | Msa0064710:CDS | 55.0% |
| ! | ATGGAGGTGATAGGAGGCAC+CGG | + | chr1_2:26011302-26011321 | Msa0064710:CDS | 55.0% |
| ! | CGCAGAAAGAGGTTTGAGGC+GGG | + | chr1_2:26011887-26011906 | Msa0064710:intron | 55.0% |
| GACTGCGACCGTGCGACAAA+GGG | - | chr1_2:26011140-26011159 | None:intergenic | 60.0% | |
| TGACTGCGACCGTGCGACAA+AGG | - | chr1_2:26011141-26011160 | None:intergenic | 60.0% | |
| ! | GGCGCAGGCGCGTTTCAAGT+TGG | + | chr1_2:26011975-26011994 | Msa0064710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 26006573 | 26012461 | 26006573 | ID=Msa0064710;Name=Msa0064710 |
| chr1_2 | mRNA | 26006573 | 26012461 | 26006573 | ID=Msa0064710-mRNA-1;Parent=Msa0064710;Name=Msa0064710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=207|1|1|1|0.83|0.71|7|444|211 |
| chr1_2 | exon | 26006573 | 26006766 | 26006573 | ID=Msa0064710-mRNA-1:exon:9263;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26007895 | 26008025 | 26007895 | ID=Msa0064710-mRNA-1:exon:9264;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26008784 | 26008839 | 26008784 | ID=Msa0064710-mRNA-1:exon:9265;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26009378 | 26009508 | 26009378 | ID=Msa0064710-mRNA-1:exon:9266;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26010325 | 26010487 | 26010325 | ID=Msa0064710-mRNA-1:exon:9267;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26011266 | 26011397 | 26011266 | ID=Msa0064710-mRNA-1:exon:9268;Parent=Msa0064710-mRNA-1 |
| chr1_2 | exon | 26011982 | 26012461 | 26011982 | ID=Msa0064710-mRNA-1:exon:9269;Parent=Msa0064710-mRNA-1 |
| chr1_2 | five_prime_UTR | 26006573 | 26006766 | 26006573 | ID=Msa0064710-mRNA-1:five_prime_utr;Parent=Msa0064710-mRNA-1 |
| chr1_2 | five_prime_UTR | 26007895 | 26007907 | 26007895 | ID=Msa0064710-mRNA-1:five_prime_utr;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26007908 | 26008025 | 26007908 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26008784 | 26008839 | 26008784 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26009378 | 26009508 | 26009378 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26010325 | 26010487 | 26010325 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26011266 | 26011397 | 26011266 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | CDS | 26011982 | 26012017 | 26011982 | ID=Msa0064710-mRNA-1:cds;Parent=Msa0064710-mRNA-1 |
| chr1_2 | three_prime_UTR | 26012018 | 26012461 | 26012018 | ID=Msa0064710-mRNA-1:three_prime_utr;Parent=Msa0064710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
