Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155890 | XP_013467043.1 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 4.13e-152 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155890 | sp|O22797|GLTP1_ARATH | 69.194 | 211 | 56 | 1 | 1 | 211 | 1 | 202 | 3.33e-106 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155890 | A0A072VI06 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 1.97e-152 | 430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0155890 | 0.819637 | 1.046141e-52 | -8.615850e-47 |
| Msa0004660 | Msa0155890 | 0.843868 | 1.075460e-58 | -8.615850e-47 |
| Msa0064710 | Msa0155890 | 0.822060 | 2.898721e-53 | -8.615850e-47 |
| Msa0155890 | Msa0574930 | 0.818133 | 2.297739e-52 | -8.615850e-47 |
| Msa0155890 | Msa0703810 | 0.813936 | 1.988916e-51 | -8.615850e-47 |
| Msa0155890 | Msa0930740 | 0.820111 | 8.153106e-53 | -8.615850e-47 |
| Msa0155890 | Msa1407760 | 0.805506 | 1.291733e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155890 | MtrunA17_Chr1g0166501 | 93.839 | 211 | 4 | 1 | 1 | 211 | 1 | 202 | 3.83e-147 | 407 |
| Msa0155890 | MtrunA17_Chr1g0187451 | 79.621 | 211 | 34 | 1 | 1 | 211 | 1 | 202 | 5.54e-125 | 351 |
| Msa0155890 | MtrunA17_Chr1g0187431 | 66.875 | 160 | 31 | 1 | 46 | 205 | 1 | 138 | 1.44e-73 | 219 |
| Msa0155890 | MtrunA17_Chr1g0159211 | 31.818 | 198 | 121 | 2 | 19 | 211 | 35 | 223 | 1.02e-33 | 120 |
| Msa0155890 | MtrunA17_Chr3g0126121 | 35.185 | 216 | 118 | 6 | 9 | 211 | 16 | 222 | 3.65e-33 | 119 |
| Msa0155890 | MtrunA17_Chr1g0159221 | 33.333 | 198 | 117 | 3 | 19 | 211 | 36 | 223 | 1.40e-32 | 117 |
| Msa0155890 | MtrunA17_Chr1g0187441 | 57.143 | 49 | 21 | 0 | 1 | 49 | 16 | 64 | 9.58e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155890 | AT2G33470.2 | 69.194 | 211 | 56 | 1 | 1 | 211 | 1 | 202 | 3.38e-107 | 306 |
| Msa0155890 | AT2G33470.1 | 69.194 | 211 | 56 | 1 | 1 | 211 | 1 | 202 | 3.38e-107 | 306 |
| Msa0155890 | AT3G21260.3 | 31.696 | 224 | 127 | 3 | 4 | 210 | 18 | 232 | 1.81e-32 | 117 |
| Msa0155890 | AT1G21360.1 | 32.323 | 198 | 121 | 2 | 17 | 210 | 34 | 222 | 2.19e-32 | 117 |
| Msa0155890 | AT1G21360.2 | 31.953 | 169 | 102 | 2 | 46 | 210 | 1 | 160 | 1.06e-26 | 100 |
| Msa0155890 | AT1G21360.3 | 36.364 | 132 | 84 | 0 | 17 | 148 | 34 | 165 | 1.01e-23 | 94.0 |
| Msa0155890 | AT3G21260.2 | 32.051 | 156 | 93 | 2 | 59 | 210 | 2 | 148 | 1.25e-22 | 89.7 |
| Msa0155890 | AT3G21260.1 | 30.921 | 152 | 92 | 2 | 63 | 210 | 1 | 143 | 1.63e-20 | 84.0 |
Find 74 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAGAATCACAAATTTC+TGG | 0.181913 | 1_4:+21541768 | Msa0155890:CDS |
| AATTCTGACCAAACATTTCT+TGG | 0.187251 | 1_4:+21538401 | Msa0155890:CDS |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1_4:+21540710 | Msa0155890:intron |
| GTTGTACCAATGGACTTCTT+TGG | 0.295273 | 1_4:+21539886 | Msa0155890:CDS |
| TATAGCAGAAAACAGATTAA+TGG | 0.308420 | 1_4:-21542680 | None:intergenic |
| ATGTATGCATACATAGTATA+TGG | 0.315800 | 1_4:-21537299 | None:intergenic |
| TCTGCTATACCTTAAAATCT+TGG | 0.317631 | 1_4:+21542694 | Msa0155890:three_prime_UTR |
| AAACAGATTAATGGAACTTC+TGG | 0.319365 | 1_4:-21542671 | None:intergenic |
| ATCAACTAGCATGATAAATA+AGG | 0.329752 | 1_4:+21542557 | Msa0155890:three_prime_UTR |
| TGAACATATGCATCAACTTC+TGG | 0.339330 | 1_4:+21537163 | Msa0155890:five_prime_UTR |
| ATTTATCATGCTAGTTGATC+TGG | 0.344900 | 1_4:-21542553 | None:intergenic |
| GAAATTTGTGATTCTGTTCA+AGG | 0.350751 | 1_4:-21541765 | None:intergenic |
| TACAGGATATTAAATCTTGA+TGG | 0.357701 | 1_4:-21539813 | None:intergenic |
| CTCTGAAGAAGTGGCATGGC+TGG | 0.367597 | 1_4:+21540808 | Msa0155890:CDS |
| TTTCTTTGTCCGTTTGCCTT+TGG | 0.375797 | 1_4:-21537196 | None:intergenic |
| CAGAGCAATGGATTTCTTGG+TGG | 0.402509 | 1_4:+21540713 | Msa0155890:intron |
| ATTTAATATCCTGTACAGTT+TGG | 0.405220 | 1_4:+21539821 | Msa0155890:CDS |
| TCCATGAACTTCTTCCTGTC+TGG | 0.406955 | 1_4:-21541676 | None:intergenic |
| CATGAGAATGCACCTATAAC+AGG | 0.411237 | 1_4:-21538444 | None:intergenic |
| AGACACATATTGCCTGTTAT+AGG | 0.427381 | 1_4:+21538432 | Msa0155890:CDS |
| GATATTAAATCTTGATGGAT+TGG | 0.428467 | 1_4:-21539808 | None:intergenic |
| ATACCTTAAAATCTTGGTAA+TGG | 0.437189 | 1_4:+21542700 | Msa0155890:three_prime_UTR |
| AAGAAGTTCATGGAGGTGAT+AGG | 0.440267 | 1_4:+21541685 | Msa0155890:CDS |
| GACTGTCTTCGGTCCTGCAC+TGG | 0.441676 | 1_4:+21538344 | Msa0155890:CDS |
| CCATGCAAGAGTCACTCATT+AGG | 0.442412 | 1_4:-21542438 | None:intergenic |
| AAAATGGAGGGGACTGTCTT+CGG | 0.450511 | 1_4:+21538333 | Msa0155890:exon |
| AGTATATGGAATGGCGAGAA+TGG | 0.464921 | 1_4:-21537285 | None:intergenic |
| TCAAAATTTGATTGAGCATG+AGG | 0.473764 | 1_4:+21540743 | Msa0155890:CDS |
| GTTGTAAAGAGTAAAATTAG+TGG | 0.473891 | 1_4:-21542595 | None:intergenic |
| GCACGAATCCAAGAAATGTT+TGG | 0.476765 | 1_4:-21538409 | None:intergenic |
| CTTGTTGTATGCATCTGTAC+AGG | 0.481715 | 1_4:-21540784 | None:intergenic |
| GCATTCAAGAGCCTCTCATC+AGG | 0.492692 | 1_4:-21542478 | None:intergenic |
| TTTCAAGTTGGATGATATGA+AGG | 0.496965 | 1_4:+21542379 | Msa0155890:CDS |
| TGAACCAGTGTAACTCTAGC+AGG | 0.509262 | 1_4:-21542734 | None:intergenic |
| TATGGAATGGCGAGAATGGA+GGG | 0.517597 | 1_4:-21537281 | None:intergenic |
| TCATGAAGCTTGCTCCAGAC+AGG | 0.518872 | 1_4:+21541662 | Msa0155890:CDS |
| ATTTGATTGAGCATGAGGAT+TGG | 0.522782 | 1_4:+21540748 | Msa0155890:CDS |
| TGATGTGATGAGATCAGAAT+CGG | 0.523136 | 1_4:-21537244 | None:intergenic |
| CCTGAAAATCTTCAGAGCAA+TGG | 0.523996 | 1_4:+21540701 | Msa0155890:intron |
| CACCTATGTCAGATTTAACA+AGG | 0.530234 | 1_4:-21539213 | None:intergenic |
| TGTTGGAGTTCTTCCAGTGC+AGG | 0.531190 | 1_4:-21538357 | None:intergenic |
| GGCGCAGGCGCGTTTCAAGT+TGG | 0.536301 | 1_4:+21542367 | Msa0155890:intron |
| CTTGCTCAGACTTTACATGT+TGG | 0.536360 | 1_4:-21538374 | None:intergenic |
| CTACTTGTACCAAACTGTAC+AGG | 0.540947 | 1_4:-21539830 | None:intergenic |
| ATGGACTTCTTTGGCTAACA+AGG | 0.540969 | 1_4:+21539895 | Msa0155890:CDS |
| TCCAGACAGGAAGAAGTTCA+TGG | 0.547330 | 1_4:+21541675 | Msa0155890:CDS |
| ACCGCGTAACCAAAGGCAAA+CGG | 0.547392 | 1_4:+21537187 | Msa0155890:five_prime_UTR |
| TAATCCTGCTAGAGTTACAC+TGG | 0.551572 | 1_4:+21542730 | Msa0155890:three_prime_UTR |
| GTGACTCTTGCATGGAATCA+TGG | 0.552779 | 1_4:+21542446 | Msa0155890:three_prime_UTR |
| ATATGGAATGGCGAGAATGG+AGG | 0.555582 | 1_4:-21537282 | None:intergenic |
| TCTGTACAGGCTTGTGACAT+TGG | 0.558578 | 1_4:-21540771 | None:intergenic |
| ACAACAAGACTCTGAAGAAG+TGG | 0.563236 | 1_4:+21540799 | Msa0155890:CDS |
| CCTAATGAGTGACTCTTGCA+TGG | 0.565001 | 1_4:+21542438 | Msa0155890:three_prime_UTR |
| AGTAGTTTACTGTGAAGCTA+AGG | 0.565240 | 1_4:+21542645 | Msa0155890:three_prime_UTR |
| TTGTGATTCTGTTCAAGGAG+AGG | 0.566782 | 1_4:-21541760 | None:intergenic |
| TCATCATCAAGTTGTACCAA+TGG | 0.567007 | 1_4:+21539876 | Msa0155890:CDS |
| TGACATAGGTGGTAATATAA+CGG | 0.567236 | 1_4:+21539225 | Msa0155890:CDS |
| TTCTGGAACCGCGTAACCAA+AGG | 0.567605 | 1_4:+21537180 | Msa0155890:five_prime_UTR |
| TCCGTTTGCCTTTGGTTACG+CGG | 0.568487 | 1_4:-21537188 | None:intergenic |
| TGTTAGCCAAAGAAGTCCAT+TGG | 0.573467 | 1_4:-21539892 | None:intergenic |
| TGCATACATAGTATATGGAA+TGG | 0.579287 | 1_4:-21537294 | None:intergenic |
| TATGTCAGCATTGATATCAC+CGG | 0.602011 | 1_4:-21541713 | None:intergenic |
| ATGGAGGTGATAGGAGGCAC+CGG | 0.603749 | 1_4:+21541694 | Msa0155890:CDS |
| GGATGCCAAAGGTGAAAACA+TGG | 0.612235 | 1_4:-21542532 | None:intergenic |
| AAGTTCATGGAGGTGATAGG+AGG | 0.623302 | 1_4:+21541688 | Msa0155890:CDS |
| ACCCTTGTTAAATCTGACAT+AGG | 0.626109 | 1_4:+21539211 | Msa0155890:CDS |
| GGTCAGAAGTTCCTGATGAG+AGG | 0.626675 | 1_4:+21542467 | Msa0155890:three_prime_UTR |
| AAGACTCTGAAGAAGTGGCA+TGG | 0.632909 | 1_4:+21540804 | Msa0155890:CDS |
| ATGAATCACAGATTCGTGCA+TGG | 0.640076 | 1_4:+21542406 | Msa0155890:exon |
| CAACATGTAAAGTCTGAGCA+AGG | 0.650058 | 1_4:+21538375 | Msa0155890:CDS |
| CTTGTTAAATCTGACATAGG+TGG | 0.650482 | 1_4:+21539214 | Msa0155890:CDS |
| CTAGTTGATCTGGATGCCAA+AGG | 0.684952 | 1_4:-21542543 | None:intergenic |
| ACCTATGTCAGATTTAACAA+GGG | 0.688070 | 1_4:-21539212 | None:intergenic |
| AGACAGGAAGAAGTTCATGG+AGG | 0.779343 | 1_4:+21541678 | Msa0155890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGAAAATTTATTAAAT+GGG | + | chr1_4:21537391-21537410 | Msa0155890:intron | 10.0% |
| !!! | GAAAATTATTTTAAACTTTT+AGG | + | chr1_4:21537597-21537616 | Msa0155890:intron | 10.0% |
| !! | AATAAATGATATAAATGTAT+TGG | + | chr1_4:21538806-21538825 | Msa0155890:intron | 10.0% |
| !!! | TTGATAAATTTTGAATCTTT+TGG | + | chr1_4:21537374-21537393 | Msa0155890:intron | 15.0% |
| !!! | CTTTTGGAAAATTTATTAAA+TGG | + | chr1_4:21537390-21537409 | Msa0155890:intron | 15.0% |
| !!! | TTTTTTATGACAGATAAATT+TGG | + | chr1_4:21539178-21539197 | Msa0155890:intron | 15.0% |
| !!! | TTAACTTTTCATACAATTAT+TGG | + | chr1_4:21539686-21539705 | Msa0155890:intron | 15.0% |
| !! | TCATATTCTTAATTCTTATT+TGG | + | chr1_4:21540441-21540460 | Msa0155890:intron | 15.0% |
| !! | AATAACAATAATATAAGCTA+AGG | - | chr1_4:21540477-21540496 | None:intergenic | 15.0% |
| !! | ATTCATACAATAACTAATAA+GGG | - | chr1_4:21541025-21541044 | None:intergenic | 15.0% |
| !! | TAACATTTCAAAAAATATAC+AGG | + | chr1_4:21541923-21541942 | Msa0155890:intron | 15.0% |
| !! | AAAAAAATTGATCCATGAAA+AGG | - | chr1_4:21537347-21537366 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTTTTTTTAGGAA+AGG | + | chr1_4:21537529-21537548 | Msa0155890:intron | 20.0% |
| !!! | AACTTAATTTATTTTCGTGT+TGG | - | chr1_4:21537652-21537671 | None:intergenic | 20.0% |
| !! | ATCACTTATAGTATAAAAGA+TGG | + | chr1_4:21537755-21537774 | Msa0155890:intron | 20.0% |
| !! | AATAAGAGAAACTATTAAGA+AGG | + | chr1_4:21537900-21537919 | Msa0155890:intron | 20.0% |
| !!! | TTTGGATACTTGAATTTTAA+CGG | + | chr1_4:21538071-21538090 | Msa0155890:intron | 20.0% |
| !! | TCATAATATTAATCATCACT+AGG | + | chr1_4:21538881-21538900 | Msa0155890:intron | 20.0% |
| !! | AACAAATGAACAATTAATCA+TGG | - | chr1_4:21539100-21539119 | None:intergenic | 20.0% |
| !! | GAAAAGTTAAATCATTAGAA+GGG | - | chr1_4:21539676-21539695 | None:intergenic | 20.0% |
| !! | TGAAAAGTTAAATCATTAGA+AGG | - | chr1_4:21539677-21539696 | None:intergenic | 20.0% |
| !! | AAAGTTAAATGAAAATTGCA+TGG | - | chr1_4:21539934-21539953 | None:intergenic | 20.0% |
| !! | TAGACGTAAAATACAATATA+TGG | + | chr1_4:21540144-21540163 | Msa0155890:intron | 20.0% |
| !! | ATAAAAGTGACAAAAAATTG+AGG | + | chr1_4:21540276-21540295 | Msa0155890:intron | 20.0% |
| !! | TAAAAGTGACAAAAAATTGA+GGG | + | chr1_4:21540277-21540296 | Msa0155890:intron | 20.0% |
| !!! | TATTCTTAATTCTTATTTGG+TGG | + | chr1_4:21540444-21540463 | Msa0155890:intron | 20.0% |
| !! | TTCATACAATAACTAATAAG+GGG | - | chr1_4:21541024-21541043 | None:intergenic | 20.0% |
| !! | CATTCATACAATAACTAATA+AGG | - | chr1_4:21541026-21541045 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr1_4:21541104-21541123 | None:intergenic | 20.0% |
| !!! | TTTCTAACTCAAATCTATTT+TGG | - | chr1_4:21541408-21541427 | None:intergenic | 20.0% |
| !!! | TTCAATTTTTACTTTGTATG+TGG | + | chr1_4:21541999-21542018 | Msa0155890:intron | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+GGG | + | chr1_4:21542000-21542019 | Msa0155890:intron | 20.0% |
| !! | TTATTATGATAGAAAGAAGA+TGG | + | chr1_4:21542059-21542078 | Msa0155890:intron | 20.0% |
| !!! | TATGCATTTTCAAATTGTTT+AGG | + | chr1_4:21542154-21542173 | Msa0155890:intron | 20.0% |
| !!! | ATGCATTTTCAAATTGTTTA+GGG | + | chr1_4:21542155-21542174 | Msa0155890:intron | 20.0% |
| !!! | GTAATTTTACTCTATATCTT+AGG | - | chr1_4:21542807-21542826 | None:intergenic | 20.0% |
| ! | ATGTATGCATACATAGTATA+TGG | - | chr1_4:21537302-21537321 | None:intergenic | 25.0% |
| ! | TATTTCTCAATTTCAGTTAC+TGG | + | chr1_4:21537421-21537440 | Msa0155890:intron | 25.0% |
| ! | ATTTCTCAATTTCAGTTACT+GGG | + | chr1_4:21537422-21537441 | Msa0155890:intron | 25.0% |
| !!! | TGGAGTTCTGTTTTTTTTTT+AGG | + | chr1_4:21537524-21537543 | Msa0155890:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+CGG | + | chr1_4:21537730-21537749 | Msa0155890:intron | 25.0% |
| ! | ACTTATAGTATAAAAGATGG+TGG | + | chr1_4:21537758-21537777 | Msa0155890:intron | 25.0% |
| ! | TGGTATTTGATAGAACATTA+TGG | + | chr1_4:21537953-21537972 | Msa0155890:intron | 25.0% |
| ! | GTTTAGCTAAAGTGTAAAAA+TGG | + | chr1_4:21538317-21538336 | Msa0155890:intron | 25.0% |
| !!! | CACACAGAATTAGTTTTTTT+GGG | - | chr1_4:21538676-21538695 | None:intergenic | 25.0% |
| ! | TATATATTTCGTCACAAATG+TGG | + | chr1_4:21538905-21538924 | Msa0155890:intron | 25.0% |
| ! | ATGAACTATATCCTTATAAG+TGG | - | chr1_4:21538989-21539008 | None:intergenic | 25.0% |
| ! | TAAGGATATAGTTCATTATC+AGG | + | chr1_4:21538993-21539012 | Msa0155890:intron | 25.0% |
| !! | GTTACTAATAGAGTACTATA+AGG | - | chr1_4:21539078-21539097 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTGAGTTTTTATC+TGG | + | chr1_4:21539376-21539395 | Msa0155890:intron | 25.0% |
| ! | TCAAATAAGTCAAACTAAAG+AGG | + | chr1_4:21539650-21539669 | Msa0155890:intron | 25.0% |
| !!! | TATACCCATATTGATTTTCA+TGG | + | chr1_4:21539760-21539779 | Msa0155890:intron | 25.0% |
| !! | GATATTAAATCTTGATGGAT+TGG | - | chr1_4:21539811-21539830 | None:intergenic | 25.0% |
| ! | TACAGGATATTAAATCTTGA+TGG | - | chr1_4:21539816-21539835 | None:intergenic | 25.0% |
| ! | ATTTAATATCCTGTACAGTT+TGG | + | chr1_4:21539821-21539840 | Msa0155890:CDS | 25.0% |
| ! | TAGAACCTAATAATAAGCTA+AGG | - | chr1_4:21540636-21540655 | None:intergenic | 25.0% |
| ! | TGAAACAAGATTAAACAGTA+GGG | - | chr1_4:21540920-21540939 | None:intergenic | 25.0% |
| !! | TGTTTAATCTTGTTTCACAT+TGG | + | chr1_4:21540923-21540942 | Msa0155890:intron | 25.0% |
| ! | TCATACAATAACTAATAAGG+GGG | - | chr1_4:21541023-21541042 | None:intergenic | 25.0% |
| ! | ATTCAGACTCTTACATTATT+TGG | + | chr1_4:21541077-21541096 | Msa0155890:intron | 25.0% |
| !! | ACTGTTTTCATATAAGCTAT+AGG | + | chr1_4:21541190-21541209 | Msa0155890:intron | 25.0% |
| !! | AACTGAAAAGCACAAAAAAA+GGG | - | chr1_4:21541561-21541580 | None:intergenic | 25.0% |
| !! | TAACTGAAAAGCACAAAAAA+AGG | - | chr1_4:21541562-21541581 | None:intergenic | 25.0% |
| ! | AAGATATCTCTAGTAATTTC+AGG | + | chr1_4:21541792-21541811 | Msa0155890:intron | 25.0% |
| ! | AATCCTATATACACAAAGTT+AGG | + | chr1_4:21541952-21541971 | Msa0155890:intron | 25.0% |
| ! | ATCCTATATACACAAAGTTA+GGG | + | chr1_4:21541953-21541972 | Msa0155890:intron | 25.0% |
| ! | AAATGCCATTAGAAAGTAAA+CGG | - | chr1_4:21541980-21541999 | None:intergenic | 25.0% |
| ! | ATCAACTAGCATGATAAATA+AGG | + | chr1_4:21542557-21542576 | Msa0155890:three_prime_UTR | 25.0% |
| ! | GTTGTAAAGAGTAAAATTAG+TGG | - | chr1_4:21542598-21542617 | None:intergenic | 25.0% |
| ! | TATAGCAGAAAACAGATTAA+TGG | - | chr1_4:21542683-21542702 | None:intergenic | 25.0% |
| ! | ATACCTTAAAATCTTGGTAA+TGG | + | chr1_4:21542700-21542719 | Msa0155890:three_prime_UTR | 25.0% |
| !! | ATTCCATTACCAAGATTTTA+AGG | - | chr1_4:21542706-21542725 | None:intergenic | 25.0% |
| TGCATACATAGTATATGGAA+TGG | - | chr1_4:21537297-21537316 | None:intergenic | 30.0% | |
| ! | CTAATTCTTCTTCCTTTTCA+TGG | + | chr1_4:21537332-21537351 | Msa0155890:intron | 30.0% |
| TTGGTCCTAAAAAGTGAAAT+TGG | + | chr1_4:21537445-21537464 | Msa0155890:intron | 30.0% | |
| !!! | GGTTACCAATTTCACTTTTT+AGG | - | chr1_4:21537453-21537472 | None:intergenic | 30.0% |
| !! | TGTTTCATGTTTTTGTCAGT+TGG | + | chr1_4:21537504-21537523 | Msa0155890:intron | 30.0% |
| !! | TATAAAAGATGGTGGAAACT+GGG | + | chr1_4:21537766-21537785 | Msa0155890:intron | 30.0% |
| GGATATAGAGATTAATGAGT+TGG | + | chr1_4:21537921-21537940 | Msa0155890:intron | 30.0% | |
| ! | TAATGAGTTGGATAGAGATA+TGG | + | chr1_4:21537933-21537952 | Msa0155890:intron | 30.0% |
| TGTTGTCTTTGTATGTCATA+AGG | + | chr1_4:21538032-21538051 | Msa0155890:intron | 30.0% | |
| GGAGCAAGATAAGTAATATT+TGG | + | chr1_4:21538053-21538072 | Msa0155890:intron | 30.0% | |
| TACAGATTTGATCTTTGCTA+AGG | + | chr1_4:21538257-21538276 | Msa0155890:intron | 30.0% | |
| ACAGATTTGATCTTTGCTAA+GGG | + | chr1_4:21538258-21538277 | Msa0155890:intron | 30.0% | |
| GGATTGCTGATATATTTGTT+TGG | + | chr1_4:21538279-21538298 | Msa0155890:intron | 30.0% | |
| TAGCTAAAGTGTAAAAATGG+AGG | + | chr1_4:21538320-21538339 | Msa0155890:intron | 30.0% | |
| AGCTAAAGTGTAAAAATGGA+GGG | + | chr1_4:21538321-21538340 | Msa0155890:intron | 30.0% | |
| AATTCTGACCAAACATTTCT+TGG | + | chr1_4:21538401-21538420 | Msa0155890:CDS | 30.0% | |
| CACTGGAAAATGTCTAATAA+GGG | - | chr1_4:21538472-21538491 | None:intergenic | 30.0% | |
| ACACTGGAAAATGTCTAATA+AGG | - | chr1_4:21538473-21538492 | None:intergenic | 30.0% | |
| !!! | TCCTCTTTTTTGTTTCACAA+TGG | + | chr1_4:21538496-21538515 | Msa0155890:intron | 30.0% |
| !!! | CCTCTTTTTTGTTTCACAAT+GGG | + | chr1_4:21538497-21538516 | Msa0155890:intron | 30.0% |
| TGTCTTACAACTCAAATATG+TGG | + | chr1_4:21538650-21538669 | Msa0155890:intron | 30.0% | |
| !!! | CCACACAGAATTAGTTTTTT+TGG | - | chr1_4:21538677-21538696 | None:intergenic | 30.0% |
| CCAAAAAAACTAATTCTGTG+TGG | + | chr1_4:21538674-21538693 | Msa0155890:intron | 30.0% | |
| ! | TGTATATATCGTTGTCACTT+AGG | + | chr1_4:21538951-21538970 | Msa0155890:intron | 30.0% |
| ATCTCTATCTTCCACTTATA+AGG | + | chr1_4:21538975-21538994 | Msa0155890:intron | 30.0% | |
| TAATATGAATACTTGCCCTA+TGG | + | chr1_4:21539129-21539148 | Msa0155890:intron | 30.0% | |
| ACCTATGTCAGATTTAACAA+GGG | - | chr1_4:21539215-21539234 | None:intergenic | 30.0% | |
| TGACATAGGTGGTAATATAA+CGG | + | chr1_4:21539225-21539244 | Msa0155890:CDS | 30.0% | |
| TGTTCTTTCTGACTCATATT+TGG | + | chr1_4:21539263-21539282 | Msa0155890:intron | 30.0% | |
| ! | GTTTTCATAAAAGCTCTGTT+TGG | + | chr1_4:21539398-21539417 | Msa0155890:intron | 30.0% |
| AAGCTATTGTGTTGAGTTTA+TGG | + | chr1_4:21539535-21539554 | Msa0155890:intron | 30.0% | |
| TCTGCCATGAAAATCAATAT+GGG | - | chr1_4:21539767-21539786 | None:intergenic | 30.0% | |
| TATTAACTCAAGTGTGAAAC+CGG | + | chr1_4:21540022-21540041 | Msa0155890:intron | 30.0% | |
| GGAATGCAAATTCAATTAGA+CGG | + | chr1_4:21540165-21540184 | Msa0155890:intron | 30.0% | |
| CAAGACCTTAGCTTATTATT+AGG | + | chr1_4:21540628-21540647 | Msa0155890:intron | 30.0% | |
| CGTTCACGCTATATTATTTA+TGG | + | chr1_4:21540661-21540680 | Msa0155890:intron | 30.0% | |
| TCAAAATTTGATTGAGCATG+AGG | + | chr1_4:21540743-21540762 | Msa0155890:CDS | 30.0% | |
| GTGAAACAAGATTAAACAGT+AGG | - | chr1_4:21540921-21540940 | None:intergenic | 30.0% | |
| ! | TTCAGTTATTTGTTTCTCCA+AGG | + | chr1_4:21541574-21541593 | Msa0155890:intron | 30.0% |
| TATGGAACTGAATATGCATT+TGG | + | chr1_4:21541610-21541629 | Msa0155890:intron | 30.0% | |
| ATGGAACTGAATATGCATTT+GGG | + | chr1_4:21541611-21541630 | Msa0155890:intron | 30.0% | |
| ! | GTGTTGAATGTTTAACTTAC+AGG | + | chr1_4:21541636-21541655 | Msa0155890:intron | 30.0% |
| GAAATTTGTGATTCTGTTCA+AGG | - | chr1_4:21541768-21541787 | None:intergenic | 30.0% | |
| TGAACAGAATCACAAATTTC+TGG | + | chr1_4:21541768-21541787 | Msa0155890:CDS | 30.0% | |
| TGTATGTGAATGATGGTTAA+TGG | + | chr1_4:21541839-21541858 | Msa0155890:intron | 30.0% | |
| AATGCCATTAGAAAGTAAAC+GGG | - | chr1_4:21541979-21541998 | None:intergenic | 30.0% | |
| ACGTCATTGTCACATATTAA+GGG | - | chr1_4:21542219-21542238 | None:intergenic | 30.0% | |
| TGCAAGAAAAAACTGCTATT+TGG | - | chr1_4:21542325-21542344 | None:intergenic | 30.0% | |
| !! | TTTCAAGTTGGATGATATGA+AGG | + | chr1_4:21542379-21542398 | Msa0155890:CDS | 30.0% |
| ATTTATCATGCTAGTTGATC+TGG | - | chr1_4:21542556-21542575 | None:intergenic | 30.0% | |
| AAACAGATTAATGGAACTTC+TGG | - | chr1_4:21542674-21542693 | None:intergenic | 30.0% | |
| TCTGCTATACCTTAAAATCT+TGG | + | chr1_4:21542694-21542713 | Msa0155890:three_prime_UTR | 30.0% | |
| TGAACATATGCATCAACTTC+TGG | + | chr1_4:21537163-21537182 | Msa0155890:five_prime_UTR | 35.0% | |
| TGATGTGATGAGATCAGAAT+CGG | - | chr1_4:21537247-21537266 | None:intergenic | 35.0% | |
| ! | CACACACAGACAAGATTTTA+AGG | - | chr1_4:21537474-21537493 | None:intergenic | 35.0% |
| ! | GATCATGTTGTTTGGATTTG+TGG | + | chr1_4:21537682-21537701 | Msa0155890:intron | 35.0% |
| !! | GTATAAAAGATGGTGGAAAC+TGG | + | chr1_4:21537765-21537784 | Msa0155890:intron | 35.0% |
| GCTTGTATAGAAAAGACATG+CGG | + | chr1_4:21537803-21537822 | Msa0155890:intron | 35.0% | |
| ! | ACGCTTTTAATCCTAGATGT+CGG | - | chr1_4:21538115-21538134 | None:intergenic | 35.0% |
| GCTAAAGTGTAAAAATGGAG+GGG | + | chr1_4:21538322-21538341 | Msa0155890:intron | 35.0% | |
| AGACACATATTGCCTGTTAT+AGG | + | chr1_4:21538432-21538451 | Msa0155890:CDS | 35.0% | |
| ACAAAAAAGAGGAAACACAC+TGG | - | chr1_4:21538489-21538508 | None:intergenic | 35.0% | |
| CCCATTGTGAAACAAAAAAG+AGG | - | chr1_4:21538500-21538519 | None:intergenic | 35.0% | |
| TTGTAAGACACGTGTCATAT+GGG | - | chr1_4:21538640-21538659 | None:intergenic | 35.0% | |
| ACCCTTGTTAAATCTGACAT+AGG | + | chr1_4:21539211-21539230 | Msa0155890:CDS | 35.0% | |
| CACCTATGTCAGATTTAACA+AGG | - | chr1_4:21539216-21539235 | None:intergenic | 35.0% | |
| CTTGTTAAATCTGACATAGG+TGG | + | chr1_4:21539214-21539233 | Msa0155890:CDS | 35.0% | |
| ATAGCACGATACAGAAAAAG+AGG | - | chr1_4:21539337-21539356 | None:intergenic | 35.0% | |
| AAGAACTTGCAAGACTGTTT+GGG | - | chr1_4:21539614-21539633 | None:intergenic | 35.0% | |
| TAAGAACTTGCAAGACTGTT+TGG | - | chr1_4:21539615-21539634 | None:intergenic | 35.0% | |
| TAGAGTGAGAACGTATACAT+AGG | - | chr1_4:21539742-21539761 | None:intergenic | 35.0% | |
| CTCTGCCATGAAAATCAATA+TGG | - | chr1_4:21539768-21539787 | None:intergenic | 35.0% | |
| ! | TTGATTTTCATGGCAGAGAT+TGG | + | chr1_4:21539770-21539789 | Msa0155890:intron | 35.0% |
| ! | TCATCATCAAGTTGTACCAA+TGG | + | chr1_4:21539876-21539895 | Msa0155890:CDS | 35.0% |
| CATAAACACGAAACAAGTTC+AGG | - | chr1_4:21540058-21540077 | None:intergenic | 35.0% | |
| TCGTGTTTATGTCGATCAAA+TGG | + | chr1_4:21540067-21540086 | Msa0155890:intron | 35.0% | |
| !! | CAAATGGTTTGCTAGTGTTA+TGG | + | chr1_4:21540083-21540102 | Msa0155890:intron | 35.0% |
| TACTCAACTTATCTTCCTCA+AGG | + | chr1_4:21540397-21540416 | Msa0155890:intron | 35.0% | |
| ATTTGATTGAGCATGAGGAT+TGG | + | chr1_4:21540748-21540767 | Msa0155890:CDS | 35.0% | |
| TAGGAACATTCAAGAGATCT+AGG | - | chr1_4:21540949-21540968 | None:intergenic | 35.0% | |
| TAGATCTCTTGAATGTTCCT+AGG | + | chr1_4:21540948-21540967 | Msa0155890:intron | 35.0% | |
| TGCAATTCAATGCATTTCCT+AGG | - | chr1_4:21540968-21540987 | None:intergenic | 35.0% | |
| GGGGAAAGATTGTAGAAAAA+TGG | - | chr1_4:21541004-21541023 | None:intergenic | 35.0% | |
| AAGCTATAGGCTGTTTACAT+AGG | + | chr1_4:21541203-21541222 | Msa0155890:intron | 35.0% | |
| AGCTATAGGCTGTTTACATA+GGG | + | chr1_4:21541204-21541223 | Msa0155890:intron | 35.0% | |
| AGATTGTTTGGAAGAGCTTA+GGG | - | chr1_4:21541291-21541310 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1_4:21541303-21541322 | None:intergenic | 35.0% | |
| ! | GTTATTTGTTTCTCCAAGGA+TGG | + | chr1_4:21541578-21541597 | Msa0155890:intron | 35.0% |
| !! | TATGTCAGCATTGATATCAC+CGG | - | chr1_4:21541716-21541735 | None:intergenic | 35.0% |
| !! | GTCTTATTTATGCTCACCAA+TGG | + | chr1_4:21541814-21541833 | Msa0155890:intron | 35.0% |
| ATCATTCACATACATGCCAT+TGG | - | chr1_4:21541833-21541852 | None:intergenic | 35.0% | |
| AATGGCATGTATGTGAATGA+TGG | + | chr1_4:21541832-21541851 | Msa0155890:intron | 35.0% | |
| GTGAATGATGGTTAATGGTA+TGG | + | chr1_4:21541844-21541863 | Msa0155890:intron | 35.0% | |
| TTCCAGAAATGCATTCTCTT+CGG | - | chr1_4:21542092-21542111 | None:intergenic | 35.0% | |
| !! | TTTAGTTCTAACATTCGGGA+AGG | - | chr1_4:21542192-21542211 | None:intergenic | 35.0% |
| TCCCGAATGTTAGAACTAAA+CGG | + | chr1_4:21542192-21542211 | Msa0155890:intron | 35.0% | |
| GACGTCATTGTCACATATTA+AGG | - | chr1_4:21542220-21542239 | None:intergenic | 35.0% | |
| ACACGTTAACAGATAGATGT+TGG | + | chr1_4:21542250-21542269 | Msa0155890:intron | 35.0% | |
| ! | GCTGACTAAACTTACTCTTT+TGG | + | chr1_4:21542346-21542365 | Msa0155890:intron | 35.0% |
| ! | TGTATCCATGTTTTCACCTT+TGG | + | chr1_4:21542527-21542546 | Msa0155890:three_prime_UTR | 35.0% |
| AGTAGTTTACTGTGAAGCTA+AGG | + | chr1_4:21542645-21542664 | Msa0155890:three_prime_UTR | 35.0% | |
| TTTCTTTGTCCGTTTGCCTT+TGG | - | chr1_4:21537199-21537218 | None:intergenic | 40.0% | |
| AGTATATGGAATGGCGAGAA+TGG | - | chr1_4:21537288-21537307 | None:intergenic | 40.0% | |
| CTCAATTTCAGTTACTGGGT+TGG | + | chr1_4:21537426-21537445 | Msa0155890:intron | 40.0% | |
| GCAGAGATGATCATGTTGTT+TGG | + | chr1_4:21537674-21537693 | Msa0155890:intron | 40.0% | |
| GACATGCGGATTCTATAGTA+AGG | + | chr1_4:21537817-21537836 | Msa0155890:intron | 40.0% | |
| AAGGAGAGTAGATCAGATGA+AGG | + | chr1_4:21537836-21537855 | Msa0155890:intron | 40.0% | |
| AGTCACATCACTAGAGTTAG+AGG | + | chr1_4:21537861-21537880 | Msa0155890:intron | 40.0% | |
| AATCACATGTGTCAGTAGTG+TGG | - | chr1_4:21538146-21538165 | None:intergenic | 40.0% | |
| TTGTTACGATGCCTTGTGTT+AGG | + | chr1_4:21538193-21538212 | Msa0155890:intron | 40.0% | |
| TGTTACGATGCCTTGTGTTA+GGG | + | chr1_4:21538194-21538213 | Msa0155890:intron | 40.0% | |
| ATGATACTGACCCTAACACA+AGG | - | chr1_4:21538207-21538226 | None:intergenic | 40.0% | |
| !! | ACAAAGCACTGACACAAACA+AGG | - | chr1_4:21538238-21538257 | None:intergenic | 40.0% |
| CTTGCTCAGACTTTACATGT+TGG | - | chr1_4:21538377-21538396 | None:intergenic | 40.0% | |
| CAACATGTAAAGTCTGAGCA+AGG | + | chr1_4:21538375-21538394 | Msa0155890:CDS | 40.0% | |
| GCACGAATCCAAGAAATGTT+TGG | - | chr1_4:21538412-21538431 | None:intergenic | 40.0% | |
| CATGAGAATGCACCTATAAC+AGG | - | chr1_4:21538447-21538466 | None:intergenic | 40.0% | |
| CTGTTATAGGTGCATTCTCA+TGG | + | chr1_4:21538445-21538464 | Msa0155890:intron | 40.0% | |
| TGTAAGACACGTGTCATATG+GGG | - | chr1_4:21538639-21538658 | None:intergenic | 40.0% | |
| GTTGTAAGACACGTGTCATA+TGG | - | chr1_4:21538641-21538660 | None:intergenic | 40.0% | |
| GGAGAAAAGATGTACAGAAC+AGG | + | chr1_4:21539014-21539033 | Msa0155890:intron | 40.0% | |
| CTTCACTTCTTCTGACCATA+GGG | - | chr1_4:21539147-21539166 | None:intergenic | 40.0% | |
| TCTTCACTTCTTCTGACCAT+AGG | - | chr1_4:21539148-21539167 | None:intergenic | 40.0% | |
| CATATGCTATCTAGCAGCTT+TGG | + | chr1_4:21539304-21539323 | Msa0155890:intron | 40.0% | |
| CTACTTGTACCAAACTGTAC+AGG | - | chr1_4:21539833-21539852 | None:intergenic | 40.0% | |
| ! | GTTGTACCAATGGACTTCTT+TGG | + | chr1_4:21539886-21539905 | Msa0155890:CDS | 40.0% |
| TGTTAGCCAAAGAAGTCCAT+TGG | - | chr1_4:21539895-21539914 | None:intergenic | 40.0% | |
| ATGGACTTCTTTGGCTAACA+AGG | + | chr1_4:21539895-21539914 | Msa0155890:CDS | 40.0% | |
| ! | AAGTTCAGGCTTTGTCTTTC+CGG | - | chr1_4:21540044-21540063 | None:intergenic | 40.0% |
| ! | CACATGTAAACACTAGCTTG+TGG | + | chr1_4:21540194-21540213 | Msa0155890:intron | 40.0% |
| ! | CACTAGCTTGTGGTCAAAAT+TGG | + | chr1_4:21540204-21540223 | Msa0155890:intron | 40.0% |
| ATCGTTACTGTCAGTGTTGT+TGG | + | chr1_4:21540572-21540591 | Msa0155890:intron | 40.0% | |
| !!! | GCTCTGAAGATTTTCAGGTT+GGG | - | chr1_4:21540699-21540718 | None:intergenic | 40.0% |
| !!! | TGCTCTGAAGATTTTCAGGT+TGG | - | chr1_4:21540700-21540719 | None:intergenic | 40.0% |
| !!! | CCATTGCTCTGAAGATTTTC+AGG | - | chr1_4:21540704-21540723 | None:intergenic | 40.0% |
| CCTGAAAATCTTCAGAGCAA+TGG | + | chr1_4:21540701-21540720 | Msa0155890:intron | 40.0% | |
| ! | CTTCAGAGCAATGGATTTCT+TGG | + | chr1_4:21540710-21540729 | Msa0155890:intron | 40.0% |
| ! | CTTGTTGTATGCATCTGTAC+AGG | - | chr1_4:21540787-21540806 | None:intergenic | 40.0% |
| ! | ACAACAAGACTCTGAAGAAG+TGG | + | chr1_4:21540799-21540818 | Msa0155890:CDS | 40.0% |
| GCTAGAGAGCTTGTAGAAAT+AGG | + | chr1_4:21541230-21541249 | Msa0155890:intron | 40.0% | |
| GAGCTTAGGGAAACAACTTA+TGG | - | chr1_4:21541278-21541297 | None:intergenic | 40.0% | |
| GAGATTGTTTGGAAGAGCTT+AGG | - | chr1_4:21541292-21541311 | None:intergenic | 40.0% | |
| CATACACTCTTAACCATCCT+TGG | - | chr1_4:21541594-21541613 | None:intergenic | 40.0% | |
| ! | CAAGGATGGTTAAGAGTGTA+TGG | + | chr1_4:21541592-21541611 | Msa0155890:intron | 40.0% |
| AAGAAGTTCATGGAGGTGAT+AGG | + | chr1_4:21541685-21541704 | Msa0155890:CDS | 40.0% | |
| TTGTGATTCTGTTCAAGGAG+AGG | - | chr1_4:21541763-21541782 | None:intergenic | 40.0% | |
| GGCCCTAACTTTGTGTATAT+AGG | - | chr1_4:21541958-21541977 | None:intergenic | 40.0% | |
| TTACTTTGTATGTGGGTGAC+TGG | + | chr1_4:21542007-21542026 | Msa0155890:intron | 40.0% | |
| AACCGAAGAGAATGCATTTC+TGG | + | chr1_4:21542087-21542106 | Msa0155890:intron | 40.0% | |
| !! | CCCGTTTAGTTCTAACATTC+GGG | - | chr1_4:21542196-21542215 | None:intergenic | 40.0% |
| CCCGAATGTTAGAACTAAAC+GGG | + | chr1_4:21542193-21542212 | Msa0155890:intron | 40.0% | |
| !! | GCCCGTTTAGTTCTAACATT+CGG | - | chr1_4:21542197-21542216 | None:intergenic | 40.0% |
| ! | TAAACTTACTCTTTTGGCGC+AGG | + | chr1_4:21542352-21542371 | Msa0155890:intron | 40.0% |
| ATGAATCACAGATTCGTGCA+TGG | + | chr1_4:21542406-21542425 | Msa0155890:exon | 40.0% | |
| TAATCCTGCTAGAGTTACAC+TGG | + | chr1_4:21542730-21542749 | Msa0155890:three_prime_UTR | 40.0% | |
| TATGGAATGGCGAGAATGGA+GGG | - | chr1_4:21537284-21537303 | None:intergenic | 45.0% | |
| ATATGGAATGGCGAGAATGG+AGG | - | chr1_4:21537285-21537304 | None:intergenic | 45.0% | |
| !! | AGATGGTGGAAACTGGGATT+AGG | + | chr1_4:21537772-21537791 | Msa0155890:intron | 45.0% |
| CTTATCCCACTAACTGAGGT+TGG | - | chr1_4:21538002-21538021 | None:intergenic | 45.0% | |
| CAACCTCAGTTAGTGGGATA+AGG | + | chr1_4:21538000-21538019 | Msa0155890:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAACTG+AGG | - | chr1_4:21538006-21538025 | None:intergenic | 45.0% |
| TCAGTTAGTGGGATAAGGCT+TGG | + | chr1_4:21538005-21538024 | Msa0155890:intron | 45.0% | |
| GTTAGGGTCAGTATCATGTC+TGG | + | chr1_4:21538210-21538229 | Msa0155890:intron | 45.0% | |
| AAAATGGAGGGGACTGTCTT+CGG | + | chr1_4:21538333-21538352 | Msa0155890:exon | 45.0% | |
| CTGAACATGGAGACATGAGT+AGG | - | chr1_4:21538597-21538616 | None:intergenic | 45.0% | |
| ! | ACATCGACGTGTTCTGAACA+TGG | - | chr1_4:21538610-21538629 | None:intergenic | 45.0% |
| AATTCTGTGTGGACACACCT+TGG | + | chr1_4:21538685-21538704 | Msa0155890:intron | 45.0% | |
| !! | ATCTGTCCAAAGAGTGTCCA+AGG | - | chr1_4:21538705-21538724 | None:intergenic | 45.0% |
| GATGTACAGAACAGGATGAC+TGG | + | chr1_4:21539022-21539041 | Msa0155890:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr1_4:21539603-21539622 | None:intergenic | 45.0% | |
| TTGAGGGAGATGCAAATTGC+TGG | + | chr1_4:21540293-21540312 | Msa0155890:intron | 45.0% | |
| !! | TTCCTCAAGGTGTTGAGTTG+AGG | + | chr1_4:21540410-21540429 | Msa0155890:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | + | chr1_4:21540713-21540732 | Msa0155890:intron | 45.0% |
| TCTGTACAGGCTTGTGACAT+TGG | - | chr1_4:21540774-21540793 | None:intergenic | 45.0% | |
| ! | AAGACTCTGAAGAAGTGGCA+TGG | + | chr1_4:21540804-21540823 | Msa0155890:CDS | 45.0% |
| GCGACAAAGGGAAAACTACA+TGG | - | chr1_4:21541520-21541539 | None:intergenic | 45.0% | |
| ! | GTAGTTTTCCCTTTGTCGCA+CGG | + | chr1_4:21541521-21541540 | Msa0155890:intron | 45.0% |
| TCCAGACAGGAAGAAGTTCA+TGG | + | chr1_4:21541675-21541694 | Msa0155890:CDS | 45.0% | |
| TCCATGAACTTCTTCCTGTC+TGG | - | chr1_4:21541679-21541698 | None:intergenic | 45.0% | |
| AGACAGGAAGAAGTTCATGG+AGG | + | chr1_4:21541678-21541697 | Msa0155890:CDS | 45.0% | |
| AAGTTCATGGAGGTGATAGG+AGG | + | chr1_4:21541688-21541707 | Msa0155890:CDS | 45.0% | |
| AGGGCCCGTTTACTTTCTAA+TGG | + | chr1_4:21541972-21541991 | Msa0155890:intron | 45.0% | |
| GTTGGTTGTATCGCAGAAAG+AGG | + | chr1_4:21542268-21542287 | Msa0155890:intron | 45.0% | |
| GTATCGCAGAAAGAGGTTTG+AGG | + | chr1_4:21542275-21542294 | Msa0155890:intron | 45.0% | |
| AGGCGGGCAATCTTATTCTT+AGG | + | chr1_4:21542295-21542314 | Msa0155890:intron | 45.0% | |
| GGCGGGCAATCTTATTCTTA+GGG | + | chr1_4:21542296-21542315 | Msa0155890:intron | 45.0% | |
| GCGGGCAATCTTATTCTTAG+GGG | + | chr1_4:21542297-21542316 | Msa0155890:intron | 45.0% | |
| CGGGCAATCTTATTCTTAGG+GGG | + | chr1_4:21542298-21542317 | Msa0155890:intron | 45.0% | |
| CCATGCAAGAGTCACTCATT+AGG | - | chr1_4:21542441-21542460 | None:intergenic | 45.0% | |
| CCTAATGAGTGACTCTTGCA+TGG | + | chr1_4:21542438-21542457 | Msa0155890:three_prime_UTR | 45.0% | |
| GTGACTCTTGCATGGAATCA+TGG | + | chr1_4:21542446-21542465 | Msa0155890:three_prime_UTR | 45.0% | |
| GGATGCCAAAGGTGAAAACA+TGG | - | chr1_4:21542535-21542554 | None:intergenic | 45.0% | |
| CTAGTTGATCTGGATGCCAA+AGG | - | chr1_4:21542546-21542565 | None:intergenic | 45.0% | |
| TGAACCAGTGTAACTCTAGC+AGG | - | chr1_4:21542737-21542756 | None:intergenic | 45.0% | |
| !! | TTCTGGAACCGCGTAACCAA+AGG | + | chr1_4:21537180-21537199 | Msa0155890:five_prime_UTR | 50.0% |
| ACCGCGTAACCAAAGGCAAA+CGG | + | chr1_4:21537187-21537206 | Msa0155890:five_prime_UTR | 50.0% | |
| TCCGTTTGCCTTTGGTTACG+CGG | - | chr1_4:21537191-21537210 | None:intergenic | 50.0% | |
| GTTAGTGGGATAAGGCTTGG+TGG | + | chr1_4:21538008-21538027 | Msa0155890:intron | 50.0% | |
| !! | CGTATGTAGCACCGACATCT+AGG | + | chr1_4:21538101-21538120 | Msa0155890:intron | 50.0% |
| TGTTGGAGTTCTTCCAGTGC+AGG | - | chr1_4:21538360-21538379 | None:intergenic | 50.0% | |
| GACACACCTTGGACACTCTT+TGG | + | chr1_4:21538696-21538715 | Msa0155890:intron | 50.0% | |
| TGCCTCAACTCAACACCTTG+AGG | - | chr1_4:21540415-21540434 | None:intergenic | 50.0% | |
| ! | TCATGAAGCTTGCTCCAGAC+AGG | + | chr1_4:21541662-21541681 | Msa0155890:CDS | 50.0% |
| TCGCAGAAAGAGGTTTGAGG+CGG | + | chr1_4:21542278-21542297 | Msa0155890:intron | 50.0% | |
| GGTCAGAAGTTCCTGATGAG+AGG | + | chr1_4:21542467-21542486 | Msa0155890:three_prime_UTR | 50.0% | |
| GCATTCAAGAGCCTCTCATC+AGG | - | chr1_4:21542481-21542500 | None:intergenic | 50.0% | |
| ! | ACTGAGGTTGGCTGGCTACA+TGG | - | chr1_4:21537990-21538009 | None:intergenic | 55.0% |
| AGCCAGCCAACCTCAGTTAG+TGG | + | chr1_4:21537993-21538012 | Msa0155890:intron | 55.0% | |
| GCCAGCCAACCTCAGTTAGT+GGG | + | chr1_4:21537994-21538013 | Msa0155890:intron | 55.0% | |
| TCCCACTAACTGAGGTTGGC+TGG | - | chr1_4:21537998-21538017 | None:intergenic | 55.0% | |
| ! | CTCTGAAGAAGTGGCATGGC+TGG | + | chr1_4:21540808-21540827 | Msa0155890:CDS | 55.0% |
| ! | ATGGAGGTGATAGGAGGCAC+CGG | + | chr1_4:21541694-21541713 | Msa0155890:CDS | 55.0% |
| ! | CGCAGAAAGAGGTTTGAGGC+GGG | + | chr1_4:21542279-21542298 | Msa0155890:intron | 55.0% |
| GACTGTCTTCGGTCCTGCAC+TGG | + | chr1_4:21538344-21538363 | Msa0155890:CDS | 60.0% | |
| GACTGCGACCGTGCGACAAA+GGG | - | chr1_4:21541532-21541551 | None:intergenic | 60.0% | |
| TGACTGCGACCGTGCGACAA+AGG | - | chr1_4:21541533-21541552 | None:intergenic | 60.0% | |
| ! | GGCGCAGGCGCGTTTCAAGT+TGG | + | chr1_4:21542367-21542386 | Msa0155890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 21537116 | 21542854 | 21537116 | ID=Msa0155890;Name=Msa0155890 |
| chr1_4 | mRNA | 21537116 | 21542854 | 21537116 | ID=Msa0155890-mRNA-1;Parent=Msa0155890;Name=Msa0155890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=207|1|1|1|0.83|0.71|7|445|211 |
| chr1_4 | exon | 21537116 | 21537309 | 21537116 | ID=Msa0155890-mRNA-1:exon:7752;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21538323 | 21538453 | 21538323 | ID=Msa0155890-mRNA-1:exon:7753;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21539191 | 21539246 | 21539191 | ID=Msa0155890-mRNA-1:exon:7754;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21539786 | 21539916 | 21539786 | ID=Msa0155890-mRNA-1:exon:7755;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21540716 | 21540878 | 21540716 | ID=Msa0155890-mRNA-1:exon:7756;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21541658 | 21541789 | 21541658 | ID=Msa0155890-mRNA-1:exon:7757;Parent=Msa0155890-mRNA-1 |
| chr1_4 | exon | 21542374 | 21542854 | 21542374 | ID=Msa0155890-mRNA-1:exon:7758;Parent=Msa0155890-mRNA-1 |
| chr1_4 | five_prime_UTR | 21537116 | 21537309 | 21537116 | ID=Msa0155890-mRNA-1:five_prime_utr;Parent=Msa0155890-mRNA-1 |
| chr1_4 | five_prime_UTR | 21538323 | 21538335 | 21538323 | ID=Msa0155890-mRNA-1:five_prime_utr;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21538336 | 21538453 | 21538336 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21539191 | 21539246 | 21539191 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21539786 | 21539916 | 21539786 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21540716 | 21540878 | 21540716 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21541658 | 21541789 | 21541658 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | CDS | 21542374 | 21542409 | 21542374 | ID=Msa0155890-mRNA-1:cds;Parent=Msa0155890-mRNA-1 |
| chr1_4 | three_prime_UTR | 21542410 | 21542854 | 21542410 | ID=Msa0155890-mRNA-1:three_prime_utr;Parent=Msa0155890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
