Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004660 | sp|O22797|GLTP1_ARATH | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.89e-107 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004660 | Msa0064710 | 0.866825 | 2.147645e-65 | -8.615850e-47 |
| Msa0004660 | Msa0155890 | 0.843868 | 1.075460e-58 | -8.615850e-47 |
| Msa0004660 | Msa0166810 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0004660 | Msa0574930 | 0.826623 | 2.450568e-54 | -8.615850e-47 |
| Msa0004660 | Msa0930740 | 0.803426 | 3.505198e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004660 | MtrunA17_Chr1g0166501 | 93.365 | 211 | 5 | 1 | 1 | 211 | 1 | 202 | 1.70e-146 | 405 |
| Msa0004660 | MtrunA17_Chr1g0187451 | 79.147 | 211 | 35 | 1 | 1 | 211 | 1 | 202 | 2.49e-124 | 349 |
| Msa0004660 | MtrunA17_Chr1g0187431 | 66.250 | 160 | 32 | 1 | 46 | 205 | 1 | 138 | 9.04e-73 | 217 |
| Msa0004660 | MtrunA17_Chr1g0159211 | 31.818 | 198 | 121 | 2 | 19 | 211 | 35 | 223 | 1.81e-33 | 119 |
| Msa0004660 | MtrunA17_Chr3g0126121 | 34.722 | 216 | 119 | 6 | 9 | 211 | 16 | 222 | 2.00e-32 | 117 |
| Msa0004660 | MtrunA17_Chr1g0159221 | 31.472 | 197 | 122 | 2 | 19 | 211 | 36 | 223 | 3.66e-32 | 116 |
| Msa0004660 | MtrunA17_Chr1g0187441 | 57.143 | 49 | 21 | 0 | 1 | 49 | 16 | 64 | 9.18e-15 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004660 | AT2G33470.2 | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.95e-108 | 309 |
| Msa0004660 | AT2G33470.1 | 69.668 | 211 | 55 | 1 | 1 | 211 | 1 | 202 | 3.95e-108 | 309 |
| Msa0004660 | AT1G21360.1 | 32.323 | 198 | 121 | 2 | 17 | 210 | 34 | 222 | 3.40e-32 | 116 |
| Msa0004660 | AT3G21260.3 | 31.696 | 224 | 127 | 3 | 4 | 210 | 18 | 232 | 3.58e-32 | 117 |
| Msa0004660 | AT1G21360.2 | 31.953 | 169 | 102 | 2 | 46 | 210 | 1 | 160 | 1.69e-26 | 100 |
| Msa0004660 | AT1G21360.3 | 36.364 | 132 | 84 | 0 | 17 | 148 | 34 | 165 | 8.49e-24 | 94.0 |
| Msa0004660 | AT3G21260.2 | 32.051 | 156 | 93 | 2 | 59 | 210 | 2 | 148 | 2.57e-22 | 89.0 |
| Msa0004660 | AT3G21260.1 | 30.921 | 152 | 92 | 2 | 63 | 210 | 1 | 143 | 3.46e-20 | 83.2 |
Find 75 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACATATGCATCAATTTC+TGG | 0.171229 | 1_1:+7132321 | Msa0004660:five_prime_UTR |
| TGAACAGAATCACAAATTTC+TGG | 0.181913 | 1_1:+7137056 | Msa0004660:CDS |
| AATTCTGACCAAACATTTCT+TGG | 0.187251 | 1_1:+7133677 | Msa0004660:CDS |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1_1:+7135999 | Msa0004660:intron |
| AGTAATTTACTCTATATCTT+AGG | 0.284154 | 1_1:-7138092 | None:intergenic |
| GTTGTACCAATGGACTTCTT+TGG | 0.295273 | 1_1:+7135182 | Msa0004660:CDS |
| TATAGCAGAAAACAGATTAA+TGG | 0.308420 | 1_1:-7137968 | None:intergenic |
| TCTGCTATACCTTAAAATCT+TGG | 0.317631 | 1_1:+7137982 | Msa0004660:three_prime_UTR |
| ATGTATACATACATAGTATA+TGG | 0.317865 | 1_1:-7132463 | None:intergenic |
| AAACAGATTAATGGAACTTC+TGG | 0.319365 | 1_1:-7137959 | None:intergenic |
| ATCAACTAGCATGATAAATA+AGG | 0.329752 | 1_1:+7137845 | Msa0004660:three_prime_UTR |
| ATTTATCATGCTAGTTGATC+TGG | 0.344900 | 1_1:-7137841 | None:intergenic |
| GAAATTTGTGATTCTGTTCA+AGG | 0.350751 | 1_1:-7137053 | None:intergenic |
| TACAGGATATTAAATCTTGA+TGG | 0.357701 | 1_1:-7135109 | None:intergenic |
| CTCTGAAGAAGTGGCATGGC+TGG | 0.367597 | 1_1:+7136097 | Msa0004660:CDS |
| TTTCTTTGTCCGTTTGCCTT+TGG | 0.375797 | 1_1:-7132360 | None:intergenic |
| CAGAGCAATGGATTTCTTGG+TGG | 0.402509 | 1_1:+7136002 | Msa0004660:intron |
| ATTTAATATCCTGTACAGTT+TGG | 0.405220 | 1_1:+7135117 | Msa0004660:CDS |
| TCCATGAACTTCTTCCTGTC+TGG | 0.406955 | 1_1:-7136964 | None:intergenic |
| CATGAGAATGCACCTATAAC+AGG | 0.411237 | 1_1:-7133720 | None:intergenic |
| TATGTCAGCATTGATATTAC+CGG | 0.417187 | 1_1:-7137001 | None:intergenic |
| AGACACATATTGCCTGTTAT+AGG | 0.427381 | 1_1:+7133708 | Msa0004660:CDS |
| GATATTAAATCTTGATGGAT+TGG | 0.428467 | 1_1:-7135104 | None:intergenic |
| ATACCTTAAAATCTTGGTAA+TGG | 0.437189 | 1_1:+7137988 | Msa0004660:three_prime_UTR |
| AAGAAGTTCATGGAGGTGAT+AGG | 0.440267 | 1_1:+7136973 | Msa0004660:CDS |
| CCATGCAAGAGTCACTCATT+AGG | 0.442412 | 1_1:-7137726 | None:intergenic |
| GACTGTCTTCGGTCCTGCAT+TGG | 0.450495 | 1_1:+7133620 | Msa0004660:CDS |
| AAAATGGAGGGGACTGTCTT+CGG | 0.450511 | 1_1:+7133609 | Msa0004660:exon |
| AGTATATGGAATGGCGAGAA+TGG | 0.464921 | 1_1:-7132449 | None:intergenic |
| TCAAAATTTGATTGAGCATG+AGG | 0.473764 | 1_1:+7136032 | Msa0004660:CDS |
| GTTGTAAAGAGTAAAATTAG+TGG | 0.473891 | 1_1:-7137883 | None:intergenic |
| GCACGAATCCAAGAAATGTT+TGG | 0.476765 | 1_1:-7133685 | None:intergenic |
| CTTGTTGTATGCATCTGTAC+AGG | 0.481715 | 1_1:-7136073 | None:intergenic |
| GCATTCAAGAGCCTCTCATC+AGG | 0.492692 | 1_1:-7137766 | None:intergenic |
| TTTCAAGTTGGATGATATGA+AGG | 0.496965 | 1_1:+7137667 | Msa0004660:CDS |
| TGAACCAGTGTAACTCTAGC+AGG | 0.509262 | 1_1:-7138022 | None:intergenic |
| TATGGAATGGCGAGAATGGA+GGG | 0.517597 | 1_1:-7132445 | None:intergenic |
| TCATGAAGCTTGCTCCAGAC+AGG | 0.518872 | 1_1:+7136950 | Msa0004660:CDS |
| ATTTGATTGAGCATGAGGAT+TGG | 0.522782 | 1_1:+7136037 | Msa0004660:CDS |
| TGATGTGATGAGATCAGAAT+CGG | 0.523136 | 1_1:-7132408 | None:intergenic |
| CCTGAAAATCTTCAGAGCAA+TGG | 0.523996 | 1_1:+7135990 | Msa0004660:intron |
| CACCTATGTCAGATTTAACA+AGG | 0.530234 | 1_1:-7134510 | None:intergenic |
| TGTTGGAGTTCTTCCAATGC+AGG | 0.534376 | 1_1:-7133633 | None:intergenic |
| GGCGCAGGCGCGTTTCAAGT+TGG | 0.536301 | 1_1:+7137655 | Msa0004660:intron |
| CTTGCTCAGACTTTACATGT+TGG | 0.536360 | 1_1:-7133650 | None:intergenic |
| CTACTTGTACCAAACTGTAC+AGG | 0.540947 | 1_1:-7135126 | None:intergenic |
| ATGGACTTCTTTGGCTAACA+AGG | 0.540969 | 1_1:+7135191 | Msa0004660:CDS |
| TCCAGACAGGAAGAAGTTCA+TGG | 0.547330 | 1_1:+7136963 | Msa0004660:CDS |
| TAATCCTGCTAGAGTTACAC+TGG | 0.551572 | 1_1:+7138018 | Msa0004660:three_prime_UTR |
| GTGACTCTTGCATGGAATCA+TGG | 0.552779 | 1_1:+7137734 | Msa0004660:three_prime_UTR |
| ATATGGAATGGCGAGAATGG+AGG | 0.555582 | 1_1:-7132446 | None:intergenic |
| TCTGTACAGGCTTGTGACAT+TGG | 0.558578 | 1_1:-7136060 | None:intergenic |
| ACAACAAGACTCTGAAGAAG+TGG | 0.563236 | 1_1:+7136088 | Msa0004660:CDS |
| CCTAATGAGTGACTCTTGCA+TGG | 0.565001 | 1_1:+7137726 | Msa0004660:three_prime_UTR |
| AGTAGTTTACTGTGAAGCTA+AGG | 0.565240 | 1_1:+7137933 | Msa0004660:three_prime_UTR |
| TTGTGATTCTGTTCAAGGAG+AGG | 0.566782 | 1_1:-7137048 | None:intergenic |
| TCATCATCAAGTTGTACCAA+TGG | 0.567007 | 1_1:+7135172 | Msa0004660:CDS |
| TGACATAGGTGGTAATATAA+CGG | 0.567236 | 1_1:+7134522 | Msa0004660:CDS |
| TAAGCGTAACCAAAGGCAAA+CGG | 0.570276 | 1_1:+7132351 | Msa0004660:five_prime_UTR |
| TGTTAGCCAAAGAAGTCCAT+TGG | 0.573467 | 1_1:-7135188 | None:intergenic |
| TACATACATAGTATATGGAA+TGG | 0.588311 | 1_1:-7132458 | None:intergenic |
| ATGGAGGTGATAGGAGGCAC+CGG | 0.606188 | 1_1:+7136982 | Msa0004660:CDS |
| GGATGCCAAAGGTGAAAACA+TGG | 0.612235 | 1_1:-7137820 | None:intergenic |
| TGCCTTTGGTTACGCTTACG+CGG | 0.619425 | 1_1:-7132346 | None:intergenic |
| AAGTTCATGGAGGTGATAGG+AGG | 0.623302 | 1_1:+7136976 | Msa0004660:CDS |
| ACCCTTGTTAAATCTGACAT+AGG | 0.626109 | 1_1:+7134508 | Msa0004660:CDS |
| GGTCAGAAGTTCCTGATGAG+AGG | 0.626675 | 1_1:+7137755 | Msa0004660:three_prime_UTR |
| AAGACTCTGAAGAAGTGGCA+TGG | 0.632909 | 1_1:+7136093 | Msa0004660:CDS |
| CAACATGTAAAGTCTGAGCA+AGG | 0.650058 | 1_1:+7133651 | Msa0004660:CDS |
| CTTGTTAAATCTGACATAGG+TGG | 0.650482 | 1_1:+7134511 | Msa0004660:CDS |
| ATGAATCACAGATTCATGCA+TGG | 0.662684 | 1_1:+7137694 | Msa0004660:exon |
| CTAGTTGATCTGGATGCCAA+AGG | 0.684952 | 1_1:-7137831 | None:intergenic |
| ACCTATGTCAGATTTAACAA+GGG | 0.688070 | 1_1:-7134509 | None:intergenic |
| AACCGCGTAAGCGTAACCAA+AGG | 0.688547 | 1_1:+7132344 | Msa0004660:five_prime_UTR |
| AGACAGGAAGAAGTTCATGG+AGG | 0.779343 | 1_1:+7136966 | Msa0004660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAAAATATTGTTTTT+GGG | - | chr1_1:7137405-7137424 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAATATTGTTTT+TGG | - | chr1_1:7137406-7137425 | None:intergenic | 10.0% |
| !!! | TTGTTAAATTTTGAATCTTT+TGG | + | chr1_1:7132533-7132552 | Msa0004660:intron | 15.0% |
| !!! | TTTTGGAAAATTTATCAAAT+GGG | + | chr1_1:7132550-7132569 | Msa0004660:intron | 15.0% |
| !!! | GAAAATTATTTTAAGCTTTT+AGG | + | chr1_1:7132756-7132775 | Msa0004660:intron | 15.0% |
| !!! | TCTTTGTATGATATTATTTT+TGG | + | chr1_1:7133196-7133215 | Msa0004660:intron | 15.0% |
| !!! | AATGATTTTTTAGCTAATAA+AGG | - | chr1_1:7133254-7133273 | None:intergenic | 15.0% |
| !! | ATTGAACATAAATTAACTAA+AGG | - | chr1_1:7133278-7133297 | None:intergenic | 15.0% |
| !! | AACATACAAATTTAAGAATT+TGG | - | chr1_1:7133305-7133324 | None:intergenic | 15.0% |
| !! | TCTTAAATTTGTATGTTATA+AGG | + | chr1_1:7133308-7133327 | Msa0004660:intron | 15.0% |
| !!! | TTTTTTATGACAGATAAATT+TGG | + | chr1_1:7134475-7134494 | Msa0004660:intron | 15.0% |
| !!! | TTAACTTTTCATACAATTAT+TGG | + | chr1_1:7134982-7135001 | Msa0004660:intron | 15.0% |
| !! | TCATATTCTTAATTCTTATT+TGG | + | chr1_1:7135730-7135749 | Msa0004660:intron | 15.0% |
| !! | AATAACAATAATATAAGCTA+AGG | - | chr1_1:7135766-7135785 | None:intergenic | 15.0% |
| !! | ATTCATACAATAACTAATAA+GGG | - | chr1_1:7136314-7136333 | None:intergenic | 15.0% |
| !! | TAACATTTCAAAAAATATAC+AGG | + | chr1_1:7137211-7137230 | Msa0004660:intron | 15.0% |
| !!! | TTTTCAAAATATTGTTTTTG+GGG | - | chr1_1:7137404-7137423 | None:intergenic | 15.0% |
| !! | ATGTATACATACATAGTATA+TGG | - | chr1_1:7132466-7132485 | None:intergenic | 20.0% |
| !!! | CTTTTGGAAAATTTATCAAA+TGG | + | chr1_1:7132549-7132568 | Msa0004660:intron | 20.0% |
| !!! | TTCTGTTTTTTTTTTAGGAA+AGG | + | chr1_1:7132688-7132707 | Msa0004660:intron | 20.0% |
| !!! | AACTTAATTTATTTTCGTGT+TGG | - | chr1_1:7132811-7132830 | None:intergenic | 20.0% |
| !! | ATTAATCTCTATATCCTTAA+TGG | - | chr1_1:7133073-7133092 | None:intergenic | 20.0% |
| !!! | TTTGGATACTTGAATTTTAA+CGG | + | chr1_1:7133347-7133366 | Msa0004660:intron | 20.0% |
| !!! | CAGATTTTTTTTTTCTTTCT+GGG | - | chr1_1:7133986-7134005 | None:intergenic | 20.0% |
| !!! | ACAGATTTTTTTTTTCTTTC+TGG | - | chr1_1:7133987-7134006 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAATCTGTG+TGG | + | chr1_1:7133988-7134007 | Msa0004660:intron | 20.0% |
| !! | AAATCATAATGTATATATCG+TGG | + | chr1_1:7134240-7134259 | Msa0004660:intron | 20.0% |
| !! | AACAAATGAACAATTAATCA+TGG | - | chr1_1:7134397-7134416 | None:intergenic | 20.0% |
| !! | GAAAAGTTAAATCATTAGAA+GGG | - | chr1_1:7134972-7134991 | None:intergenic | 20.0% |
| !! | TGAAAAGTTAAATCATTAGA+AGG | - | chr1_1:7134973-7134992 | None:intergenic | 20.0% |
| !! | AAAGTTAAATGAAAATTGCA+TGG | - | chr1_1:7135230-7135249 | None:intergenic | 20.0% |
| !! | TAGACGTAAAATACAATATA+TGG | + | chr1_1:7135428-7135447 | Msa0004660:intron | 20.0% |
| !! | ATAAAAGTGACAAAAAATTG+AGG | + | chr1_1:7135560-7135579 | Msa0004660:intron | 20.0% |
| !! | TAAAAGTGACAAAAAATTGA+GGG | + | chr1_1:7135561-7135580 | Msa0004660:intron | 20.0% |
| !!! | TATTCTTAATTCTTATTTGG+TGG | + | chr1_1:7135733-7135752 | Msa0004660:intron | 20.0% |
| !! | TTCATACAATAACTAATAAG+GGG | - | chr1_1:7136313-7136332 | None:intergenic | 20.0% |
| !! | CATTCATACAATAACTAATA+AGG | - | chr1_1:7136315-7136334 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr1_1:7136393-7136412 | None:intergenic | 20.0% |
| !!! | TTTCTAACTCAAATCTATTT+TGG | - | chr1_1:7136696-7136715 | None:intergenic | 20.0% |
| !! | TAAGATATCTCTAGTAATTT+CGG | + | chr1_1:7137079-7137098 | Msa0004660:intron | 20.0% |
| !!! | TTCAATTTTTACTTTGTATG+TGG | + | chr1_1:7137287-7137306 | Msa0004660:intron | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+GGG | + | chr1_1:7137288-7137307 | Msa0004660:intron | 20.0% |
| !! | TTATTATGATAGAAAGAAGA+TGG | + | chr1_1:7137347-7137366 | Msa0004660:intron | 20.0% |
| !!! | TATGCATTTTCAAATTGTTT+AGG | + | chr1_1:7137442-7137461 | Msa0004660:intron | 20.0% |
| !!! | ATGCATTTTCAAATTGTTTA+GGG | + | chr1_1:7137443-7137462 | Msa0004660:intron | 20.0% |
| !! | AGTAATTTACTCTATATCTT+AGG | - | chr1_1:7138095-7138114 | None:intergenic | 20.0% |
| ! | TACATACATAGTATATGGAA+TGG | - | chr1_1:7132461-7132480 | None:intergenic | 25.0% |
| ! | AAAAACATTGATCCATGAAA+AGG | - | chr1_1:7132511-7132530 | None:intergenic | 25.0% |
| ! | TATTTCTCAATTTCAGTTAC+TGG | + | chr1_1:7132580-7132599 | Msa0004660:intron | 25.0% |
| ! | ATTTCTCAATTTCAGTTACT+GGG | + | chr1_1:7132581-7132600 | Msa0004660:intron | 25.0% |
| !!! | TGGAGTTCTGTTTTTTTTTT+AGG | + | chr1_1:7132683-7132702 | Msa0004660:intron | 25.0% |
| !! | AATTTTGAACTTTGCATAGT+TGG | + | chr1_1:7132731-7132750 | Msa0004660:intron | 25.0% |
| ! | TAAATTAAGTTTAGCAGAGA+TGG | + | chr1_1:7132820-7132839 | Msa0004660:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+CGG | + | chr1_1:7132890-7132909 | Msa0004660:intron | 25.0% |
| ! | ATCACTTATAGTAGAAAAGA+TGG | + | chr1_1:7132915-7132934 | Msa0004660:intron | 25.0% |
| ! | AACAATAAGAGAAACCATTA+AGG | + | chr1_1:7133056-7133075 | Msa0004660:intron | 25.0% |
| ! | TGGTATTTGATAGAACATTA+TGG | + | chr1_1:7133109-7133128 | Msa0004660:intron | 25.0% |
| ! | GTTTAGCTAAAGTGTAAAAA+TGG | + | chr1_1:7133593-7133612 | Msa0004660:intron | 25.0% |
| ! | ATGAACTAGATACTTATAAG+TGG | - | chr1_1:7134287-7134306 | None:intergenic | 25.0% |
| !! | TAAGTATCTAGTTCATTATC+AGG | + | chr1_1:7134291-7134310 | Msa0004660:intron | 25.0% |
| !! | GTTACTAATAGAGTACTATA+AGG | - | chr1_1:7134375-7134394 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAAACTAAAG+AGG | + | chr1_1:7134946-7134965 | Msa0004660:intron | 25.0% |
| !!! | TATACCCATATTGATTTTCA+TGG | + | chr1_1:7135056-7135075 | Msa0004660:intron | 25.0% |
| !! | GATATTAAATCTTGATGGAT+TGG | - | chr1_1:7135107-7135126 | None:intergenic | 25.0% |
| ! | TACAGGATATTAAATCTTGA+TGG | - | chr1_1:7135112-7135131 | None:intergenic | 25.0% |
| ! | ATTTAATATCCTGTACAGTT+TGG | + | chr1_1:7135117-7135136 | Msa0004660:CDS | 25.0% |
| ! | TAGAACCTAATAATAAGCTA+AGG | - | chr1_1:7135925-7135944 | None:intergenic | 25.0% |
| ! | TGAAACAAGATTAAACAGTA+GGG | - | chr1_1:7136209-7136228 | None:intergenic | 25.0% |
| !! | TGTTTAATCTTGTTTCACAT+TGG | + | chr1_1:7136212-7136231 | Msa0004660:intron | 25.0% |
| ! | TCATACAATAACTAATAAGG+GGG | - | chr1_1:7136312-7136331 | None:intergenic | 25.0% |
| ! | AACTGTTTCATATAAGCTAT+AGG | + | chr1_1:7136478-7136497 | Msa0004660:intron | 25.0% |
| !! | AACTGAAAAGCACAAAAAAA+GGG | - | chr1_1:7136849-7136868 | None:intergenic | 25.0% |
| !! | TAACTGAAAAGCACAAAAAA+AGG | - | chr1_1:7136850-7136869 | None:intergenic | 25.0% |
| ! | AAGATATCTCTAGTAATTTC+GGG | + | chr1_1:7137080-7137099 | Msa0004660:intron | 25.0% |
| ! | AATCCTATATACACAAAGTT+AGG | + | chr1_1:7137240-7137259 | Msa0004660:intron | 25.0% |
| ! | ATCCTATATACACAAAGTTA+GGG | + | chr1_1:7137241-7137260 | Msa0004660:intron | 25.0% |
| ! | ATCAACTAGCATGATAAATA+AGG | + | chr1_1:7137845-7137864 | Msa0004660:three_prime_UTR | 25.0% |
| ! | GTTGTAAAGAGTAAAATTAG+TGG | - | chr1_1:7137886-7137905 | None:intergenic | 25.0% |
| ! | TATAGCAGAAAACAGATTAA+TGG | - | chr1_1:7137971-7137990 | None:intergenic | 25.0% |
| ! | ATACCTTAAAATCTTGGTAA+TGG | + | chr1_1:7137988-7138007 | Msa0004660:three_prime_UTR | 25.0% |
| !! | ATTCCATTACCAAGATTTTA+AGG | - | chr1_1:7137994-7138013 | None:intergenic | 25.0% |
| TGAACATATGCATCAATTTC+TGG | + | chr1_1:7132321-7132340 | Msa0004660:five_prime_UTR | 30.0% | |
| ! | CTAATTCTTCTTCCTTTTCA+TGG | + | chr1_1:7132496-7132515 | Msa0004660:intron | 30.0% |
| TTGGTCCTAAAAAGTGAAAT+TGG | + | chr1_1:7132604-7132623 | Msa0004660:intron | 30.0% | |
| !!! | GGTTACCAATTTCACTTTTT+AGG | - | chr1_1:7132612-7132631 | None:intergenic | 30.0% |
| !! | TGTTTCATGTTTTTGTCAGT+TGG | + | chr1_1:7132663-7132682 | Msa0004660:intron | 30.0% |
| ACTTATAGTAGAAAAGATGG+TGG | + | chr1_1:7132918-7132937 | Msa0004660:intron | 30.0% | |
| GGATATAGAGATTAATGAGT+TGG | + | chr1_1:7133077-7133096 | Msa0004660:intron | 30.0% | |
| ! | TAATGAGTTGGATAGAGATA+TGG | + | chr1_1:7133089-7133108 | Msa0004660:intron | 30.0% |
| GGAGCAAGATAAGTAATATT+TGG | + | chr1_1:7133329-7133348 | Msa0004660:intron | 30.0% | |
| TACAGATTTGATCTTTGCTA+AGG | + | chr1_1:7133533-7133552 | Msa0004660:intron | 30.0% | |
| ACAGATTTGATCTTTGCTAA+GGG | + | chr1_1:7133534-7133553 | Msa0004660:intron | 30.0% | |
| GGATTGCTGATATATTTGTT+TGG | + | chr1_1:7133555-7133574 | Msa0004660:intron | 30.0% | |
| TAGCTAAAGTGTAAAAATGG+AGG | + | chr1_1:7133596-7133615 | Msa0004660:intron | 30.0% | |
| AGCTAAAGTGTAAAAATGGA+GGG | + | chr1_1:7133597-7133616 | Msa0004660:intron | 30.0% | |
| AATTCTGACCAAACATTTCT+TGG | + | chr1_1:7133677-7133696 | Msa0004660:CDS | 30.0% | |
| CACTGGAAAATGTCTAATAA+GGG | - | chr1_1:7133748-7133767 | None:intergenic | 30.0% | |
| ACACTGGAAAATGTCTAATA+AGG | - | chr1_1:7133749-7133768 | None:intergenic | 30.0% | |
| TCATAGTATTCATCATCACT+AGG | + | chr1_1:7134171-7134190 | Msa0004660:intron | 30.0% | |
| ACCTATGTCAGATTTAACAA+GGG | - | chr1_1:7134512-7134531 | None:intergenic | 30.0% | |
| TGACATAGGTGGTAATATAA+CGG | + | chr1_1:7134522-7134541 | Msa0004660:CDS | 30.0% | |
| TGTTCTTTCTGACTCATATT+TGG | + | chr1_1:7134560-7134579 | Msa0004660:intron | 30.0% | |
| !! | GTTCTGTTTGAGTTTTTATC+TGG | + | chr1_1:7134672-7134691 | Msa0004660:intron | 30.0% |
| ! | GTTTTCATAAAAGCTCTGTT+TGG | + | chr1_1:7134694-7134713 | Msa0004660:intron | 30.0% |
| TCTGCCATGAAAATCAATAT+GGG | - | chr1_1:7135063-7135082 | None:intergenic | 30.0% | |
| TATTAACTCAAGTGTGAAAC+CGG | + | chr1_1:7135318-7135337 | Msa0004660:intron | 30.0% | |
| GGAATGCAAATTCAATTAGA+CGG | + | chr1_1:7135449-7135468 | Msa0004660:intron | 30.0% | |
| ATTGTTACTGTTAGTGTTGT+TGG | + | chr1_1:7135861-7135880 | Msa0004660:intron | 30.0% | |
| CAAGACCTTAGCTTATTATT+AGG | + | chr1_1:7135917-7135936 | Msa0004660:intron | 30.0% | |
| CGTTCACGCTATATTATTTA+TGG | + | chr1_1:7135950-7135969 | Msa0004660:intron | 30.0% | |
| TCAAAATTTGATTGAGCATG+AGG | + | chr1_1:7136032-7136051 | Msa0004660:CDS | 30.0% | |
| GTGAAACAAGATTAAACAGT+AGG | - | chr1_1:7136210-7136229 | None:intergenic | 30.0% | |
| ATTCAGCCTCTTACATTATT+TGG | + | chr1_1:7136366-7136385 | Msa0004660:intron | 30.0% | |
| ! | TTCAGTTATTTGTTTCTCCA+AGG | + | chr1_1:7136862-7136881 | Msa0004660:intron | 30.0% |
| TATGGAACTGAATATGCATT+TGG | + | chr1_1:7136898-7136917 | Msa0004660:intron | 30.0% | |
| ATGGAACTGAATATGCATTT+GGG | + | chr1_1:7136899-7136918 | Msa0004660:intron | 30.0% | |
| ! | GTGTTGAATGTTTAACTTAC+AGG | + | chr1_1:7136924-7136943 | Msa0004660:intron | 30.0% |
| !! | TATGTCAGCATTGATATTAC+CGG | - | chr1_1:7137004-7137023 | None:intergenic | 30.0% |
| GAAATTTGTGATTCTGTTCA+AGG | - | chr1_1:7137056-7137075 | None:intergenic | 30.0% | |
| TGAACAGAATCACAAATTTC+TGG | + | chr1_1:7137056-7137075 | Msa0004660:CDS | 30.0% | |
| TGTATGTGAATGATGGTTAA+TGG | + | chr1_1:7137127-7137146 | Msa0004660:intron | 30.0% | |
| ACGTCATTGTCACATATTAA+GGG | - | chr1_1:7137507-7137526 | None:intergenic | 30.0% | |
| TGCAAGAAAAAACTGCTATT+TGG | - | chr1_1:7137613-7137632 | None:intergenic | 30.0% | |
| !! | TTTCAAGTTGGATGATATGA+AGG | + | chr1_1:7137667-7137686 | Msa0004660:CDS | 30.0% |
| ATTTATCATGCTAGTTGATC+TGG | - | chr1_1:7137844-7137863 | None:intergenic | 30.0% | |
| AAACAGATTAATGGAACTTC+TGG | - | chr1_1:7137962-7137981 | None:intergenic | 30.0% | |
| TCTGCTATACCTTAAAATCT+TGG | + | chr1_1:7137982-7138001 | Msa0004660:three_prime_UTR | 30.0% | |
| TGATGTGATGAGATCAGAAT+CGG | - | chr1_1:7132411-7132430 | None:intergenic | 35.0% | |
| ! | CACACACAGACAAGATTTTA+AGG | - | chr1_1:7132633-7132652 | None:intergenic | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+GGG | + | chr1_1:7132926-7132945 | Msa0004660:intron | 35.0% |
| GCATGTATAGAAAAGACATG+CGG | + | chr1_1:7132963-7132982 | Msa0004660:intron | 35.0% | |
| CATGTATAGAAAAGACATGC+GGG | + | chr1_1:7132964-7132983 | Msa0004660:intron | 35.0% | |
| ATGTATAGAAAAGACATGCG+GGG | + | chr1_1:7132965-7132984 | Msa0004660:intron | 35.0% | |
| ! | ATAAAGGCATGAGTCATTGA+AGG | - | chr1_1:7133238-7133257 | None:intergenic | 35.0% |
| ! | ACGCTTTTAATCCTAGATGT+CGG | - | chr1_1:7133391-7133410 | None:intergenic | 35.0% |
| GCTAAAGTGTAAAAATGGAG+GGG | + | chr1_1:7133598-7133617 | Msa0004660:intron | 35.0% | |
| AGACACATATTGCCTGTTAT+AGG | + | chr1_1:7133708-7133727 | Msa0004660:CDS | 35.0% | |
| ACAAAAAAGAGGAAACACAC+TGG | - | chr1_1:7133765-7133784 | None:intergenic | 35.0% | |
| !!! | TCCTCTTTTTTGTTTCACGA+AGG | + | chr1_1:7133772-7133791 | Msa0004660:intron | 35.0% |
| !!! | CCTCTTTTTTGTTTCACGAA+GGG | + | chr1_1:7133773-7133792 | Msa0004660:intron | 35.0% |
| !!! | TTTTAAGACACGTGTTGTAC+GGG | - | chr1_1:7133950-7133969 | None:intergenic | 35.0% |
| !!! | GTTTTAAGACACGTGTTGTA+CGG | - | chr1_1:7133951-7133970 | None:intergenic | 35.0% |
| TGTATATATCGTGGTCACTA+AGG | + | chr1_1:7134249-7134268 | Msa0004660:intron | 35.0% | |
| GGAGAAAAGATGTACAAAAC+AGG | + | chr1_1:7134312-7134331 | Msa0004660:intron | 35.0% | |
| TGATATGAATACTTGCCCTA+TGG | + | chr1_1:7134426-7134445 | Msa0004660:intron | 35.0% | |
| ACCCTTGTTAAATCTGACAT+AGG | + | chr1_1:7134508-7134527 | Msa0004660:CDS | 35.0% | |
| CACCTATGTCAGATTTAACA+AGG | - | chr1_1:7134513-7134532 | None:intergenic | 35.0% | |
| CTTGTTAAATCTGACATAGG+TGG | + | chr1_1:7134511-7134530 | Msa0004660:CDS | 35.0% | |
| ATAGCACGATACAGAAAAAG+AGG | - | chr1_1:7134634-7134653 | None:intergenic | 35.0% | |
| AAGCTATCGTGTTGAGTTTA+TGG | + | chr1_1:7134831-7134850 | Msa0004660:intron | 35.0% | |
| AAGAACTTGCAAGACTGTTT+GGG | - | chr1_1:7134910-7134929 | None:intergenic | 35.0% | |
| TAAGAACTTGCAAGACTGTT+TGG | - | chr1_1:7134911-7134930 | None:intergenic | 35.0% | |
| TAGAGTGAGAACGTATACAT+AGG | - | chr1_1:7135038-7135057 | None:intergenic | 35.0% | |
| CTCTGCCATGAAAATCAATA+TGG | - | chr1_1:7135064-7135083 | None:intergenic | 35.0% | |
| ! | TTGATTTTCATGGCAGAGAT+TGG | + | chr1_1:7135066-7135085 | Msa0004660:intron | 35.0% |
| ! | TCATCATCAAGTTGTACCAA+TGG | + | chr1_1:7135172-7135191 | Msa0004660:CDS | 35.0% |
| CATAAACACGAAACAAGTTC+AGG | - | chr1_1:7135354-7135373 | None:intergenic | 35.0% | |
| TCGTGTTTATGTCGAACAAA+TGG | + | chr1_1:7135363-7135382 | Msa0004660:intron | 35.0% | |
| TACTCAACTTATCTTCCTCA+AGG | + | chr1_1:7135686-7135705 | Msa0004660:intron | 35.0% | |
| ATTTGATTGAGCATGAGGAT+TGG | + | chr1_1:7136037-7136056 | Msa0004660:CDS | 35.0% | |
| TAGGAACATTCAAGAGATCT+AGG | - | chr1_1:7136238-7136257 | None:intergenic | 35.0% | |
| TAGATCTCTTGAATGTTCCT+AGG | + | chr1_1:7136237-7136256 | Msa0004660:intron | 35.0% | |
| TGCAATTCAATGCATTTCCT+AGG | - | chr1_1:7136257-7136276 | None:intergenic | 35.0% | |
| ACAGGACCAAATAATGTAAG+AGG | - | chr1_1:7136375-7136394 | None:intergenic | 35.0% | |
| AAGCTATAGGCTGTTTACAT+AGG | + | chr1_1:7136491-7136510 | Msa0004660:intron | 35.0% | |
| AGCTATAGGCTGTTTACATA+GGG | + | chr1_1:7136492-7136511 | Msa0004660:intron | 35.0% | |
| AGATTGTTTGGAAGAGCTTA+GGG | - | chr1_1:7136579-7136598 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1_1:7136591-7136610 | None:intergenic | 35.0% | |
| ! | GTTATTTGTTTCTCCAAGGA+TGG | + | chr1_1:7136866-7136885 | Msa0004660:intron | 35.0% |
| ATCATTCACATACATGCCAT+TGG | - | chr1_1:7137121-7137140 | None:intergenic | 35.0% | |
| AATGGCATGTATGTGAATGA+TGG | + | chr1_1:7137120-7137139 | Msa0004660:intron | 35.0% | |
| GTGAATGATGGTTAATGGTA+TGG | + | chr1_1:7137132-7137151 | Msa0004660:intron | 35.0% | |
| TTCCAGAAATGCATTCTCTT+CGG | - | chr1_1:7137380-7137399 | None:intergenic | 35.0% | |
| !! | TTTAGTTCTAACATTCGGGA+AGG | - | chr1_1:7137480-7137499 | None:intergenic | 35.0% |
| TCCCGAATGTTAGAACTAAA+CGG | + | chr1_1:7137480-7137499 | Msa0004660:intron | 35.0% | |
| GACGTCATTGTCACATATTA+AGG | - | chr1_1:7137508-7137527 | None:intergenic | 35.0% | |
| ACACGTTAACAGAAAGATGT+TGG | + | chr1_1:7137538-7137557 | Msa0004660:intron | 35.0% | |
| ! | GCTGACTAAACTTACTCTTT+TGG | + | chr1_1:7137634-7137653 | Msa0004660:intron | 35.0% |
| ATGAATCACAGATTCATGCA+TGG | + | chr1_1:7137694-7137713 | Msa0004660:exon | 35.0% | |
| ! | TGTATCCATGTTTTCACCTT+TGG | + | chr1_1:7137815-7137834 | Msa0004660:three_prime_UTR | 35.0% |
| AGTAGTTTACTGTGAAGCTA+AGG | + | chr1_1:7137933-7137952 | Msa0004660:three_prime_UTR | 35.0% | |
| TAAGCGTAACCAAAGGCAAA+CGG | + | chr1_1:7132351-7132370 | Msa0004660:five_prime_UTR | 40.0% | |
| TTTCTTTGTCCGTTTGCCTT+TGG | - | chr1_1:7132363-7132382 | None:intergenic | 40.0% | |
| AGTATATGGAATGGCGAGAA+TGG | - | chr1_1:7132452-7132471 | None:intergenic | 40.0% | |
| CTCAATTTCAGTTACTGGGT+TGG | + | chr1_1:7132585-7132604 | Msa0004660:intron | 40.0% | |
| GTCATGTTGTGTTGGATTTG+TGG | + | chr1_1:7132842-7132861 | Msa0004660:intron | 40.0% | |
| GGATTTGTGGTAAGACTAGA+CGG | + | chr1_1:7132855-7132874 | Msa0004660:intron | 40.0% | |
| GATTTGTGGTAAGACTAGAC+GGG | + | chr1_1:7132856-7132875 | Msa0004660:intron | 40.0% | |
| !! | GTAGAAAAGATGGTGGAAAC+TGG | + | chr1_1:7132925-7132944 | Msa0004660:intron | 40.0% |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr1_1:7132995-7133014 | Msa0004660:intron | 40.0% | |
| ATGGATAGTCACATCACTAG+AGG | + | chr1_1:7133014-7133033 | Msa0004660:intron | 40.0% | |
| AATCACATGTGTCAGTAGTG+TGG | - | chr1_1:7133422-7133441 | None:intergenic | 40.0% | |
| TTGTTACGATGCCTTGTGTT+AGG | + | chr1_1:7133469-7133488 | Msa0004660:intron | 40.0% | |
| TGTTACGATGCCTTGTGTTA+GGG | + | chr1_1:7133470-7133489 | Msa0004660:intron | 40.0% | |
| ATGATACTGACCCTAACACA+AGG | - | chr1_1:7133483-7133502 | None:intergenic | 40.0% | |
| !! | ACAAAGCACTGACACAAACA+AGG | - | chr1_1:7133514-7133533 | None:intergenic | 40.0% |
| CTTGCTCAGACTTTACATGT+TGG | - | chr1_1:7133653-7133672 | None:intergenic | 40.0% | |
| CAACATGTAAAGTCTGAGCA+AGG | + | chr1_1:7133651-7133670 | Msa0004660:CDS | 40.0% | |
| GCACGAATCCAAGAAATGTT+TGG | - | chr1_1:7133688-7133707 | None:intergenic | 40.0% | |
| CATGAGAATGCACCTATAAC+AGG | - | chr1_1:7133723-7133742 | None:intergenic | 40.0% | |
| CTGTTATAGGTGCATTCTCA+TGG | + | chr1_1:7133721-7133740 | Msa0004660:intron | 40.0% | |
| CCCTTCGTGAAACAAAAAAG+AGG | - | chr1_1:7133776-7133795 | None:intergenic | 40.0% | |
| ATTAGGTGTGTTTCCATGTC+TGG | + | chr1_1:7133904-7133923 | Msa0004660:intron | 40.0% | |
| ! | TTTAAGACACGTGTTGTACG+GGG | - | chr1_1:7133949-7133968 | None:intergenic | 40.0% |
| !! | ATCTGTCCAAAGAGTGTCTA+AGG | - | chr1_1:7134019-7134038 | None:intergenic | 40.0% |
| GATGTACAAAACAGGATGAC+TGG | + | chr1_1:7134320-7134339 | Msa0004660:intron | 40.0% | |
| CTTCACTTCTTCTGACCATA+GGG | - | chr1_1:7134444-7134463 | None:intergenic | 40.0% | |
| TCTTCACTTCTTCTGACCAT+AGG | - | chr1_1:7134445-7134464 | None:intergenic | 40.0% | |
| CATATGCTATCTAGCAGCTT+TGG | + | chr1_1:7134601-7134620 | Msa0004660:intron | 40.0% | |
| CTACTTGTACCAAACTGTAC+AGG | - | chr1_1:7135129-7135148 | None:intergenic | 40.0% | |
| ! | GTTGTACCAATGGACTTCTT+TGG | + | chr1_1:7135182-7135201 | Msa0004660:CDS | 40.0% |
| TGTTAGCCAAAGAAGTCCAT+TGG | - | chr1_1:7135191-7135210 | None:intergenic | 40.0% | |
| ATGGACTTCTTTGGCTAACA+AGG | + | chr1_1:7135191-7135210 | Msa0004660:CDS | 40.0% | |
| ! | AAGTTCAGGCTTTGTCTTTC+CGG | - | chr1_1:7135340-7135359 | None:intergenic | 40.0% |
| ! | CACATGTAAACACTAGCTTG+TGG | + | chr1_1:7135478-7135497 | Msa0004660:intron | 40.0% |
| ! | CACTAGCTTGTGGTCAAAAT+TGG | + | chr1_1:7135488-7135507 | Msa0004660:intron | 40.0% |
| !!! | GCTCTGAAGATTTTCAGGTT+GGG | - | chr1_1:7135988-7136007 | None:intergenic | 40.0% |
| !!! | TGCTCTGAAGATTTTCAGGT+TGG | - | chr1_1:7135989-7136008 | None:intergenic | 40.0% |
| !!! | CCATTGCTCTGAAGATTTTC+AGG | - | chr1_1:7135993-7136012 | None:intergenic | 40.0% |
| CCTGAAAATCTTCAGAGCAA+TGG | + | chr1_1:7135990-7136009 | Msa0004660:intron | 40.0% | |
| ! | CTTCAGAGCAATGGATTTCT+TGG | + | chr1_1:7135999-7136018 | Msa0004660:intron | 40.0% |
| ! | CTTGTTGTATGCATCTGTAC+AGG | - | chr1_1:7136076-7136095 | None:intergenic | 40.0% |
| ! | ACAACAAGACTCTGAAGAAG+TGG | + | chr1_1:7136088-7136107 | Msa0004660:CDS | 40.0% |
| GCTAGAGAGCTTGTAGAAAT+AGG | + | chr1_1:7136518-7136537 | Msa0004660:intron | 40.0% | |
| GAGCTTAGGGAAACAACTTA+TGG | - | chr1_1:7136566-7136585 | None:intergenic | 40.0% | |
| GAGATTGTTTGGAAGAGCTT+AGG | - | chr1_1:7136580-7136599 | None:intergenic | 40.0% | |
| CATACACTCTTAACCATCCT+TGG | - | chr1_1:7136882-7136901 | None:intergenic | 40.0% | |
| ! | CAAGGATGGTTAAGAGTGTA+TGG | + | chr1_1:7136880-7136899 | Msa0004660:intron | 40.0% |
| AAGAAGTTCATGGAGGTGAT+AGG | + | chr1_1:7136973-7136992 | Msa0004660:CDS | 40.0% | |
| TTGTGATTCTGTTCAAGGAG+AGG | - | chr1_1:7137051-7137070 | None:intergenic | 40.0% | |
| ! | GTCTTATTGATGCTCACCAA+TGG | + | chr1_1:7137102-7137121 | Msa0004660:intron | 40.0% |
| GGCCCTAACTTTGTGTATAT+AGG | - | chr1_1:7137246-7137265 | None:intergenic | 40.0% | |
| TTACTTTGTATGTGGGTGAC+TGG | + | chr1_1:7137295-7137314 | Msa0004660:intron | 40.0% | |
| AACCGAAGAGAATGCATTTC+TGG | + | chr1_1:7137375-7137394 | Msa0004660:intron | 40.0% | |
| !! | CCCGTTTAGTTCTAACATTC+GGG | - | chr1_1:7137484-7137503 | None:intergenic | 40.0% |
| CCCGAATGTTAGAACTAAAC+GGG | + | chr1_1:7137481-7137500 | Msa0004660:intron | 40.0% | |
| !! | GCCCGTTTAGTTCTAACATT+CGG | - | chr1_1:7137485-7137504 | None:intergenic | 40.0% |
| ! | TAAACTTACTCTTTTGGCGC+AGG | + | chr1_1:7137640-7137659 | Msa0004660:intron | 40.0% |
| TAATCCTGCTAGAGTTACAC+TGG | + | chr1_1:7138018-7138037 | Msa0004660:three_prime_UTR | 40.0% | |
| TATGGAATGGCGAGAATGGA+GGG | - | chr1_1:7132448-7132467 | None:intergenic | 45.0% | |
| ATATGGAATGGCGAGAATGG+AGG | - | chr1_1:7132449-7132468 | None:intergenic | 45.0% | |
| CAGAGATGGTCATGTTGTGT+TGG | + | chr1_1:7132834-7132853 | Msa0004660:intron | 45.0% | |
| !! | AGATGGTGGAAACTGGGATT+AGG | + | chr1_1:7132932-7132951 | Msa0004660:intron | 45.0% |
| CATGCGGGGATTCTATAGTA+AGG | + | chr1_1:7132979-7132998 | Msa0004660:intron | 45.0% | |
| AGTCACATCACTAGAGGTAG+AGG | + | chr1_1:7133020-7133039 | Msa0004660:intron | 45.0% | |
| CTTATCCCACTAACTGAGGT+TGG | - | chr1_1:7133158-7133177 | None:intergenic | 45.0% | |
| CAACCTCAGTTAGTGGGATA+AGG | + | chr1_1:7133156-7133175 | Msa0004660:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAACTG+AGG | - | chr1_1:7133162-7133181 | None:intergenic | 45.0% |
| TCAGTTAGTGGGATAAGGCT+TGG | + | chr1_1:7133161-7133180 | Msa0004660:intron | 45.0% | |
| GTTAGGGTCAGTATCATGTC+TGG | + | chr1_1:7133486-7133505 | Msa0004660:intron | 45.0% | |
| AAAATGGAGGGGACTGTCTT+CGG | + | chr1_1:7133609-7133628 | Msa0004660:exon | 45.0% | |
| TGTTGGAGTTCTTCCAATGC+AGG | - | chr1_1:7133636-7133655 | None:intergenic | 45.0% | |
| TCCACGCTTCATAGATGAGT+AGG | - | chr1_1:7133874-7133893 | None:intergenic | 45.0% | |
| GACACACCTTAGACACTCTT+TGG | + | chr1_1:7134010-7134029 | Msa0004660:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr1_1:7134899-7134918 | None:intergenic | 45.0% | |
| TTGAGGGAGATGCAAATTGC+TGG | + | chr1_1:7135577-7135596 | Msa0004660:intron | 45.0% | |
| !! | TTCCTCAAGGTGTTGAGTTG+AGG | + | chr1_1:7135699-7135718 | Msa0004660:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | + | chr1_1:7136002-7136021 | Msa0004660:intron | 45.0% |
| TCTGTACAGGCTTGTGACAT+TGG | - | chr1_1:7136063-7136082 | None:intergenic | 45.0% | |
| ! | AAGACTCTGAAGAAGTGGCA+TGG | + | chr1_1:7136093-7136112 | Msa0004660:CDS | 45.0% |
| GCGACAAAGGGAAAACTACA+TGG | - | chr1_1:7136808-7136827 | None:intergenic | 45.0% | |
| ! | GTAGTTTTCCCTTTGTCGCA+CGG | + | chr1_1:7136809-7136828 | Msa0004660:intron | 45.0% |
| TCCAGACAGGAAGAAGTTCA+TGG | + | chr1_1:7136963-7136982 | Msa0004660:CDS | 45.0% | |
| TCCATGAACTTCTTCCTGTC+TGG | - | chr1_1:7136967-7136986 | None:intergenic | 45.0% | |
| AGACAGGAAGAAGTTCATGG+AGG | + | chr1_1:7136966-7136985 | Msa0004660:CDS | 45.0% | |
| AAGTTCATGGAGGTGATAGG+AGG | + | chr1_1:7136976-7136995 | Msa0004660:CDS | 45.0% | |
| GTTGGTTGTATCGCAGAAAG+AGG | + | chr1_1:7137556-7137575 | Msa0004660:intron | 45.0% | |
| GTATCGCAGAAAGAGGTTTG+AGG | + | chr1_1:7137563-7137582 | Msa0004660:intron | 45.0% | |
| AGGCGGGCAATCTTATTCTT+AGG | + | chr1_1:7137583-7137602 | Msa0004660:intron | 45.0% | |
| GGCGGGCAATCTTATTCTTA+GGG | + | chr1_1:7137584-7137603 | Msa0004660:intron | 45.0% | |
| GCGGGCAATCTTATTCTTAG+GGG | + | chr1_1:7137585-7137604 | Msa0004660:intron | 45.0% | |
| CGGGCAATCTTATTCTTAGG+GGG | + | chr1_1:7137586-7137605 | Msa0004660:intron | 45.0% | |
| CCATGCAAGAGTCACTCATT+AGG | - | chr1_1:7137729-7137748 | None:intergenic | 45.0% | |
| CCTAATGAGTGACTCTTGCA+TGG | + | chr1_1:7137726-7137745 | Msa0004660:three_prime_UTR | 45.0% | |
| GTGACTCTTGCATGGAATCA+TGG | + | chr1_1:7137734-7137753 | Msa0004660:three_prime_UTR | 45.0% | |
| GGATGCCAAAGGTGAAAACA+TGG | - | chr1_1:7137823-7137842 | None:intergenic | 45.0% | |
| CTAGTTGATCTGGATGCCAA+AGG | - | chr1_1:7137834-7137853 | None:intergenic | 45.0% | |
| TGAACCAGTGTAACTCTAGC+AGG | - | chr1_1:7138025-7138044 | None:intergenic | 45.0% | |
| AACCGCGTAAGCGTAACCAA+AGG | + | chr1_1:7132344-7132363 | Msa0004660:five_prime_UTR | 50.0% | |
| TGCCTTTGGTTACGCTTACG+CGG | - | chr1_1:7132349-7132368 | None:intergenic | 50.0% | |
| !! | CGTATGTAGCACCGACATCT+AGG | + | chr1_1:7133377-7133396 | Msa0004660:intron | 50.0% |
| GCCTACTCATCTATGAAGCG+TGG | + | chr1_1:7133870-7133889 | Msa0004660:intron | 50.0% | |
| CTATGAAGCGTGGACACTTC+TGG | + | chr1_1:7133880-7133899 | Msa0004660:intron | 50.0% | |
| !! | GCGTGGACACTTCTGGAATT+AGG | + | chr1_1:7133887-7133906 | Msa0004660:intron | 50.0% |
| TGCCTCAACTCAACACCTTG+AGG | - | chr1_1:7135704-7135723 | None:intergenic | 50.0% | |
| ! | TCATGAAGCTTGCTCCAGAC+AGG | + | chr1_1:7136950-7136969 | Msa0004660:CDS | 50.0% |
| TCGCAGAAAGAGGTTTGAGG+CGG | + | chr1_1:7137566-7137585 | Msa0004660:intron | 50.0% | |
| GGTCAGAAGTTCCTGATGAG+AGG | + | chr1_1:7137755-7137774 | Msa0004660:three_prime_UTR | 50.0% | |
| GCATTCAAGAGCCTCTCATC+AGG | - | chr1_1:7137769-7137788 | None:intergenic | 50.0% | |
| ! | ACTGAGGTTGGCTGGCTACA+TGG | - | chr1_1:7133146-7133165 | None:intergenic | 55.0% |
| AGCCAGCCAACCTCAGTTAG+TGG | + | chr1_1:7133149-7133168 | Msa0004660:intron | 55.0% | |
| GCCAGCCAACCTCAGTTAGT+GGG | + | chr1_1:7133150-7133169 | Msa0004660:intron | 55.0% | |
| TCCCACTAACTGAGGTTGGC+TGG | - | chr1_1:7133154-7133173 | None:intergenic | 55.0% | |
| GACTGTCTTCGGTCCTGCAT+TGG | + | chr1_1:7133620-7133639 | Msa0004660:CDS | 55.0% | |
| ACATCGACGTGTGCCAGACA+TGG | - | chr1_1:7133920-7133939 | None:intergenic | 55.0% | |
| ! | CTCTGAAGAAGTGGCATGGC+TGG | + | chr1_1:7136097-7136116 | Msa0004660:CDS | 55.0% |
| ! | ATGGAGGTGATAGGAGGCAC+CGG | + | chr1_1:7136982-7137001 | Msa0004660:CDS | 55.0% |
| ! | CGCAGAAAGAGGTTTGAGGC+GGG | + | chr1_1:7137567-7137586 | Msa0004660:intron | 55.0% |
| GACTGCGACCGTGCGACAAA+GGG | - | chr1_1:7136820-7136839 | None:intergenic | 60.0% | |
| TGACTGCGACCGTGCGACAA+AGG | - | chr1_1:7136821-7136840 | None:intergenic | 60.0% | |
| ! | GGCGCAGGCGCGTTTCAAGT+TGG | + | chr1_1:7137655-7137674 | Msa0004660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7132274 | 7138141 | 7132274 | ID=Msa0004660;Name=Msa0004660 |
| chr1_1 | mRNA | 7132274 | 7138141 | 7132274 | ID=Msa0004660-mRNA-1;Parent=Msa0004660;Name=Msa0004660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=213|1|1|1|0.83|0.71|7|444|211 |
| chr1_1 | exon | 7132274 | 7132473 | 7132274 | ID=Msa0004660-mRNA-1:exon:2451;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7133599 | 7133729 | 7133599 | ID=Msa0004660-mRNA-1:exon:2452;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7134488 | 7134543 | 7134488 | ID=Msa0004660-mRNA-1:exon:2453;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7135082 | 7135212 | 7135082 | ID=Msa0004660-mRNA-1:exon:2454;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7136005 | 7136167 | 7136005 | ID=Msa0004660-mRNA-1:exon:2455;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7136946 | 7137077 | 7136946 | ID=Msa0004660-mRNA-1:exon:2456;Parent=Msa0004660-mRNA-1 |
| chr1_1 | exon | 7137662 | 7138141 | 7137662 | ID=Msa0004660-mRNA-1:exon:2457;Parent=Msa0004660-mRNA-1 |
| chr1_1 | five_prime_UTR | 7132274 | 7132473 | 7132274 | ID=Msa0004660-mRNA-1:five_prime_utr;Parent=Msa0004660-mRNA-1 |
| chr1_1 | five_prime_UTR | 7133599 | 7133611 | 7133599 | ID=Msa0004660-mRNA-1:five_prime_utr;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7133612 | 7133729 | 7133612 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7134488 | 7134543 | 7134488 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7135082 | 7135212 | 7135082 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7136005 | 7136167 | 7136005 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7136946 | 7137077 | 7136946 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | CDS | 7137662 | 7137697 | 7137662 | ID=Msa0004660-mRNA-1:cds;Parent=Msa0004660-mRNA-1 |
| chr1_1 | three_prime_UTR | 7137698 | 7138141 | 7137698 | ID=Msa0004660-mRNA-1:three_prime_utr;Parent=Msa0004660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
