AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0066380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066380 MtrunA17_Chr1g0169881 72.093 301 66 3 1 283 1 301 4.45e-155 434
Msa0066380 MtrunA17_Chr1g0148421 60.841 309 88 5 1 283 1 302 6.89e-128 365
Msa0066380 MtrunA17_Chr3g0138621 53.846 312 112 5 1 283 1 309 3.20e-110 321
Msa0066380 MtrunA17_Chr7g0264931 49.804 255 104 3 50 283 18 269 2.04e-85 257
Msa0066380 MtrunA17_Chr4g0028121 45.091 275 120 6 29 282 40 304 7.48e-75 231
Msa0066380 MtrunA17_Chr2g0286331 42.688 253 120 4 48 279 10 258 2.03e-61 195
Msa0066380 MtrunA17_Chr8g0391161 28.520 277 152 8 33 279 972 1232 6.65e-33 127
Msa0066380 MtrunA17_Chr6g0484171 28.723 282 154 8 30 279 956 1222 2.64e-29 117
Msa0066380 MtrunA17_Chr4g0059881 41.000 100 58 1 180 279 1171 1269 3.08e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066380 AT5G25560.1 50.000 268 109 4 37 283 45 308 1.41e-88 266
Msa0066380 AT5G25560.5 50.000 268 109 4 37 283 45 308 1.41e-88 266
Msa0066380 AT5G25560.6 50.000 268 109 4 37 283 45 308 1.41e-88 266
Msa0066380 AT5G25560.2 50.000 268 109 4 37 283 45 308 1.41e-88 266
Msa0066380 AT5G25560.3 48.201 278 109 5 37 283 45 318 1.73e-85 259
Msa0066380 AT5G25560.4 48.507 268 108 5 37 283 45 303 1.04e-82 251
Msa0066380 AT5G22920.1 46.332 259 115 3 45 282 16 271 8.10e-78 238
Msa0066380 AT5G18650.1 42.248 258 122 5 44 279 6 258 2.89e-61 195
Msa0066380 AT5G22920.2 43.111 225 104 3 45 248 16 237 3.86e-58 186
Msa0066380 AT3G62970.1 38.095 273 140 7 30 280 10 275 7.28e-54 177
Msa0066380 AT3G62970.2 36.709 237 122 6 30 244 10 240 1.02e-42 147
Msa0066380 AT3G62970.3 35.683 227 118 6 30 234 10 230 5.35e-38 134
Msa0066380 AT3G18290.1 30.000 280 152 11 30 279 974 1239 6.62e-32 125
Msa0066380 AT1G74770.1 45.000 100 54 1 180 279 1159 1257 3.34e-23 99.8
Msa0066380 AT1G18910.1 45.000 100 54 1 180 279 1154 1252 2.12e-22 97.4

Find 214 sgRNAs with CRISPR-Local

Find 774 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTATTGTAATTTA+TGG 0.062295 1_2:-29857787 Msa0066380:five_prime_UTR
TTCAATCCGGTTCCTGATTA+TGG 0.195784 1_2:-29858778 Msa0066380:five_prime_UTR
TAGCATGGACTGTAAGAATT+TGG 0.199648 1_2:-29858347 Msa0066380:five_prime_UTR
CCATTTCATCTCACTTAATT+TGG 0.208166 1_2:-29854232 Msa0066380:three_prime_UTR
GATAAAGGATACATGGAATA+TGG 0.235762 1_2:-29857345 Msa0066380:CDS
CTTCTTGTTTAACCTCAATT+TGG 0.242671 1_2:-29858135 Msa0066380:five_prime_UTR
CGAACCAGTAATCCTATTAA+AGG 0.245080 1_2:+29858945 None:intergenic
ACACCACAGTTAATACAATT+TGG 0.247115 1_2:+29856197 None:intergenic
TCTCGTCTGTCGTGTGTTAT+AGG 0.247468 1_2:+29854288 None:intergenic
AGATGTGACTCTGTAATTTA+TGG 0.251631 1_2:-29858532 Msa0066380:five_prime_UTR
GAGTATTCATAATTGTAATT+AGG 0.251708 1_2:-29858866 Msa0066380:five_prime_UTR
TAACCCTTTAATAGGATTAC+TGG 0.255875 1_2:-29858949 Msa0066380:five_prime_UTR
CAATGCTGAACAACACTTTA+TGG 0.263522 1_2:-29857964 Msa0066380:intron
AAGGATTCCAGATTTGATTT+TGG 0.266935 1_2:+29857414 None:intergenic
TTAGGTTGTAACCCTTTAAT+AGG 0.268244 1_2:-29858957 Msa0066380:five_prime_UTR
AAACGATTTGACAAGGAAAA+TGG 0.273845 1_2:+29859635 None:intergenic
ATGAATGATTATATCAGTTT+AGG 0.287811 1_2:-29858625 Msa0066380:five_prime_UTR
TATCATGGTGAAGACTATAT+TGG 0.297574 1_2:-29858037 Msa0066380:five_prime_UTR
GTTGCCCTTGTTTGTTCGTT+TGG 0.303272 1_2:-29859237 Msa0066380:five_prime_UTR
TTGGTGTTTACCTGGCTTGA+TGG 0.304208 1_2:-29857635 Msa0066380:five_prime_UTR
TTGGAGGATTAACGTCTTCT+TGG 0.305325 1_2:+29857433 None:intergenic
GAAGGTGGTTTAATCTAGTT+TGG 0.311338 1_2:-29853908 Msa0066380:three_prime_UTR
CTGTGATATGTCAAGGGTTT+GGG 0.325412 1_2:-29854813 Msa0066380:CDS
ATTATATATATACATGGATT+TGG 0.330496 1_2:-29858010 Msa0066380:five_prime_UTR
CCAAATTAAGTGAGATGAAA+TGG 0.333323 1_2:+29854232 None:intergenic
CGAGTTTGATATAATTCAAC+AGG 0.333735 1_2:+29858910 None:intergenic
CAGATGGGCAAGGCATTAAA+AGG 0.334692 1_2:+29858428 None:intergenic
AAATAGGTTGGAATTTCTTT+TGG 0.337526 1_2:-29857852 Msa0066380:intron
ACCGGAGAAGATGCCGAATC+AGG 0.341031 1_2:-29857227 Msa0066380:CDS
ACAAATGATTTGCAAGATAA+AGG 0.341490 1_2:-29857360 Msa0066380:CDS
TGAGCAATACCAAAATAAAA+TGG 0.342214 1_2:-29854753 Msa0066380:intron
TTTAATAATGTTCATTGCTT+AGG 0.342214 1_2:-29858975 Msa0066380:five_prime_UTR
ATCATGGTGAAGACTATATT+GGG 0.344181 1_2:-29858036 Msa0066380:five_prime_UTR
TATTAACTGTGGTGTTTGTA+TGG 0.349579 1_2:-29856189 Msa0066380:CDS
TACATGGATTTGGTAAGTTT+CGG 0.354268 1_2:-29858000 Msa0066380:five_prime_UTR
GAATGGATTTGATACTAGTT+TGG 0.355229 1_2:-29858252 Msa0066380:five_prime_UTR
CACCTGTTTGACTTGGTGTC+GGG 0.359703 1_2:+29856940 None:intergenic
CAAATGGTGGGACCCCTTCC+CGG 0.367038 1_2:-29859292 Msa0066380:five_prime_UTR
GTCAAGGGTTTGGGAGAGAT+TGG 0.368404 1_2:-29854804 Msa0066380:CDS
TAGAAATAACTTCTTGTGTA+AGG 0.369231 1_2:-29859330 Msa0066380:five_prime_UTR
TAATCCTCCAAAATCAAATC+TGG 0.375712 1_2:-29857421 Msa0066380:CDS
CGGGAAGGGGTCCCACCATT+TGG 0.381455 1_2:+29859293 None:intergenic
ATGGAAACTTTCAATCATAA+AGG 0.387266 1_2:+29854251 None:intergenic
AGGGGTAACCTTGGCGCAAC+TGG 0.387780 1_2:-29859396 Msa0066380:five_prime_UTR
GCACAAATACTCCTCGGATT+AGG 0.392788 1_2:-29859117 Msa0066380:five_prime_UTR
CAAATCTGAAAGAAAATTGC+TGG 0.393169 1_2:+29858486 None:intergenic
CAAGAAATCAACAATGCATT+TGG 0.394892 1_2:-29857654 Msa0066380:five_prime_UTR
TGGAGGATTAACGTCTTCTT+GGG 0.398592 1_2:+29857434 None:intergenic
TTACATAGCTGAATAACCTT+AGG 0.398690 1_2:-29858711 Msa0066380:five_prime_UTR
GCAACGTAAGCATATGCAAC+TGG 0.399284 1_2:+29858557 None:intergenic
TCTGTGATATGTCAAGGGTT+TGG 0.400427 1_2:-29854814 Msa0066380:CDS
TGGTGTTTACCTGGCTTGAT+GGG 0.400828 1_2:-29857634 Msa0066380:five_prime_UTR
TGTCTGAGTACATGCTTCAT+AGG 0.406448 1_2:-29859006 Msa0066380:five_prime_UTR
TCTCTTGGAGTAATGGTGAT+TGG 0.407766 1_2:-29857730 Msa0066380:five_prime_UTR
CAATGCATTTGGTGTTTACC+TGG 0.410773 1_2:-29857643 Msa0066380:five_prime_UTR
AAGATAAAAGAAGACTTAGA+TGG 0.411528 1_2:+29854057 None:intergenic
GCATATGCAGGGTCCGGGAA+GGG 0.413809 1_2:+29859279 None:intergenic
TGTCCGACAAAGAAACAAAA+AGG 0.414014 1_2:+29858282 None:intergenic
CATATGCAGGGTCCGGGAAG+GGG 0.415211 1_2:+29859280 None:intergenic
ATTCATTGCCTTAAAACAAA+AGG 0.421357 1_2:+29859143 None:intergenic
CTCCGATCAATCTATCTTCA+AGG 0.426689 1_2:+29859705 None:intergenic
CTAAATTTGTTCGTAAATGC+AGG 0.429992 1_2:-29857573 Msa0066380:five_prime_UTR
CAAATTGAGGTTAAACAAGA+AGG 0.433374 1_2:+29858136 None:intergenic
TCAAAACACAAACCATAATC+AGG 0.437774 1_2:+29858766 None:intergenic
TGTTTAGTTTAGTTTGGAGG+TGG 0.439412 1_2:-29854090 Msa0066380:three_prime_UTR
GGAGCCAACTTTGATGTTGT+TGG 0.440404 1_2:-29858326 Msa0066380:five_prime_UTR
TCAAATCTGGAATCCTTGCC+TGG 0.447006 1_2:-29857408 Msa0066380:CDS
GATTCACTTGATGCTTCTCC+AGG 0.447764 1_2:+29857390 None:intergenic
CCCTGATTCGGCATCTTCTC+CGG 0.448395 1_2:+29857226 None:intergenic
GAAGCAGGGCAGTAAGCTTA+AGG 0.448741 1_2:+29857549 None:intergenic
TATCAACTATATCTAGAAGC+AGG 0.449495 1_2:+29857534 None:intergenic
ACTAGAGCTCCCGCATATGC+AGG 0.454860 1_2:+29859267 None:intergenic
CACAAACCATAATCAGGAAC+CGG 0.455020 1_2:+29858772 None:intergenic
GCCCCGACACCAAGTCAAAC+AGG 0.459750 1_2:-29856942 Msa0066380:intron
TTTGAAGATAGCTTGTATCA+TGG 0.460287 1_2:-29857505 Msa0066380:exon
GATGTTGTTGGAGCTTCGTA+TGG 0.462211 1_2:-29858314 Msa0066380:five_prime_UTR
GCTCCCGCATATGCAGGGTC+CGG 0.466464 1_2:+29859273 None:intergenic
TGCAACAAGGAGCCCTGATT+CGG 0.470133 1_2:+29857214 None:intergenic
GAACCAGTAATCCTATTAAA+GGG 0.470282 1_2:+29858946 None:intergenic
CGCATATGCAGGGTCCGGGA+AGG 0.471383 1_2:+29859278 None:intergenic
TTCCCGGACCCTGCATATGC+GGG 0.471788 1_2:-29859276 Msa0066380:five_prime_UTR
TGTTTGTTCGTTTGGCTCGA+GGG 0.472633 1_2:-29859415 Msa0066380:five_prime_UTR
TTGTCGGACAGCAAGAAGAA+TGG 0.474483 1_2:-29858269 Msa0066380:five_prime_UTR
ATAAAGGATACATGGAATAT+GGG 0.477054 1_2:-29857344 Msa0066380:intron
TCCTCGGATTAGGTGTGTCC+TGG 0.480678 1_2:-29859107 Msa0066380:five_prime_UTR
GCGGAAACACCGGTCATGTT+CGG 0.481081 1_2:-29854348 Msa0066380:CDS
CTTCCCGGACCCTGCATATG+CGG 0.484509 1_2:-29859277 Msa0066380:five_prime_UTR
TTGCTTCCTGCAGTTGGAGA+TGG 0.485580 1_2:+29858460 None:intergenic
CTATGTTCACTGCCAAATTG+AGG 0.485809 1_2:+29858123 None:intergenic
TTATTCCATTGTGTCTAAGC+GGG 0.487443 1_2:+29854147 None:intergenic
TGGTAAGTTTCGGTTTCTGA+AGG 0.488664 1_2:-29857990 Msa0066380:five_prime_UTR
TGCCTTAAAACAAAAGGCCT+TGG 0.490396 1_2:+29859149 None:intergenic
TTGAAGATAGCTTGTATCAT+GGG 0.490686 1_2:-29857504 Msa0066380:exon
CTCCCGCATATGCAGGGTCC+GGG 0.491023 1_2:+29859274 None:intergenic
GTAATGGCTGTGGAATTTGC+AGG 0.495528 1_2:-29855945 Msa0066380:intron
ACGGCGATTGAATTGATGTT+GGG 0.496011 1_2:+29859677 None:intergenic
TTGATTCCTCGAAGAACTCC+CGG 0.499465 1_2:+29857818 None:intergenic
ATGCGGGAGCTCTAGTGCAC+CGG 0.500837 1_2:-29859260 Msa0066380:five_prime_UTR
TTGTTTGTTCGTTTGGCTCG+AGG 0.500922 1_2:-29859416 Msa0066380:five_prime_UTR
CAGAACGACTTCGAACATAG+AGG 0.501864 1_2:+29854833 None:intergenic
TCACCATGATAGATTCCCTT+GGG 0.506033 1_2:+29858049 None:intergenic
GTGTTCATCTCTTGGAGTAA+TGG 0.506132 1_2:-29857737 Msa0066380:five_prime_UTR
GTGTGGGTGTCGGACATGAT+AGG 0.508854 1_2:+29859075 None:intergenic
AAACTAGATTAAACCACCTT+CGG 0.513131 1_2:+29853910 None:intergenic
TTTCCAGCTATGATTCAATC+CGG 0.513161 1_2:-29858791 Msa0066380:five_prime_UTR
GTGTCATTAGTTTACTCCCA+AGG 0.515247 1_2:-29858065 Msa0066380:five_prime_UTR
AACGGCGATTGAATTGATGT+TGG 0.516699 1_2:+29859676 None:intergenic
AGTGAACATAGTTCACCTTC+AGG 0.517150 1_2:-29858111 Msa0066380:five_prime_UTR
TACATAGCTGAATAACCTTA+GGG 0.517493 1_2:-29858710 Msa0066380:five_prime_UTR
TTTGCAGATGCCAACACTAC+CGG 0.517868 1_2:-29857245 Msa0066380:intron
ACTTGATGCTTCTCCAGGCA+AGG 0.518546 1_2:+29857395 None:intergenic
GAACCGGATTGAATCATAGC+TGG 0.520414 1_2:+29858788 None:intergenic
CAATCAATATTATTTCCCTA+AGG 0.521353 1_2:+29858695 None:intergenic
TTCACCATGATAGATTCCCT+TGG 0.521465 1_2:+29858048 None:intergenic
AGCTCCAACAACATCAAAGT+TGG 0.525332 1_2:+29858322 None:intergenic
GCTGTGTACAATACACCAAA+TGG 0.525412 1_2:-29859308 Msa0066380:five_prime_UTR
GGTAAGTTTCGGTTTCTGAA+GGG 0.526040 1_2:-29857989 Msa0066380:five_prime_UTR
TTTGGCTCGAGGGGTAACCT+TGG 0.526351 1_2:-29859405 Msa0066380:five_prime_UTR
TTGTTCGTTTGGCTCGTGTT+TGG 0.527752 1_2:-29859226 Msa0066380:five_prime_UTR
ACGAGCCAAACGAACAAACA+AGG 0.528651 1_2:+29859232 None:intergenic
GGCATCTTCTCCGGTAGTGT+TGG 0.528892 1_2:+29857235 None:intergenic
ACTCCCAAGGGAATCTATCA+TGG 0.529688 1_2:-29858052 Msa0066380:five_prime_UTR
AATAGGATTACTGGTTCGAC+TGG 0.531719 1_2:-29858940 Msa0066380:five_prime_UTR
CCGGAGAAGATGCCGAATCA+GGG 0.533742 1_2:-29857226 Msa0066380:CDS
AAGCAGCAGTACCATTGTAA+TGG 0.540337 1_2:-29855961 Msa0066380:CDS
TCTCACTTAATTTGGTGTCA+AGG 0.540340 1_2:-29854224 Msa0066380:three_prime_UTR
AGAAAGTGAAGATGAACAAA+CGG 0.540710 1_2:+29859658 None:intergenic
TTTAGTCACCCCATCAAGCC+AGG 0.541385 1_2:+29857625 None:intergenic
CAGTACCATTGTAATGGCTG+TGG 0.543474 1_2:-29855955 Msa0066380:CDS
TGCAATGACTGCGGAAACAC+CGG 0.544929 1_2:-29854358 Msa0066380:CDS
ACCTGTTTGACTTGGTGTCG+GGG 0.548265 1_2:+29856941 None:intergenic
TTATTATTTAGATTATACGT+TGG 0.548793 1_2:-29859542 Msa0066380:five_prime_UTR
TTGGAGCCATCTCCAACTGC+AGG 0.549096 1_2:-29858466 Msa0066380:five_prime_UTR
GGTGGTTTAATCTAGTTTGG+AGG 0.549161 1_2:-29853905 Msa0066380:three_prime_UTR
GTAAGTTTCGGTTTCTGAAG+GGG 0.550680 1_2:-29857988 Msa0066380:five_prime_UTR
TGTCATTAGTTTACTCCCAA+GGG 0.551747 1_2:-29858064 Msa0066380:five_prime_UTR
ATTAACTGTGGTGTTTGTAT+GGG 0.551930 1_2:-29856188 Msa0066380:CDS
GAATATGCAAAATTCAATCA+AGG 0.553376 1_2:+29859509 None:intergenic
AAAATGGAACCGAACATGAC+CGG 0.555237 1_2:+29854339 None:intergenic
CATTTATCTCGCACCGAAGG+TGG 0.555327 1_2:-29853923 Msa0066380:three_prime_UTR
ATGTTTCCGGGAGTTCTTCG+AGG 0.555720 1_2:-29857824 Msa0066380:five_prime_UTR
ACACCTGTTTGACTTGGTGT+CGG 0.555973 1_2:+29856939 None:intergenic
TAGGTAGAGAAGTCTTTCGC+AGG 0.559676 1_2:-29858599 Msa0066380:five_prime_UTR
TTTACACTAGAAGAGTTAGC+TGG 0.559857 1_2:-29853816 Msa0066380:three_prime_UTR
AGTCGTTCTGTGATATGTCA+AGG 0.560608 1_2:-29854820 Msa0066380:CDS
CATTAATATAATCATATGTG+TGG 0.560740 1_2:+29859058 None:intergenic
GAGTTTGCATTGTAACCTCA+AGG 0.567257 1_2:-29853790 Msa0066380:three_prime_UTR
GTTTGTTCGTTTGGCTCGAG+GGG 0.574057 1_2:-29859414 Msa0066380:five_prime_UTR
GTCCTTGAAGATAGATTGAT+CGG 0.575880 1_2:-29859707 Msa0066380:five_prime_UTR
TGTTTCCGCAGTCATTGCAC+AGG 0.575987 1_2:+29854362 None:intergenic
TTTGCAAGATAAAGGATACA+TGG 0.576830 1_2:-29857352 Msa0066380:CDS
GGGGTGATTATATATATACA+TGG 0.577360 1_2:-29858016 Msa0066380:five_prime_UTR
ACGAACAAACAAGGGCAACC+CGG 0.578353 1_2:+29859241 None:intergenic
ACTTTGTGCAACTGAACAAG+AGG 0.578809 1_2:-29856785 Msa0066380:intron
TGTTATAGGAGTTGCAGTTG+AGG 0.581082 1_2:+29854302 None:intergenic
TTCTTCCATTGTAACAAGTG+TGG 0.583354 1_2:-29855525 Msa0066380:intron
TTTGGCTCGTGTTTGGTACG+TGG 0.583460 1_2:-29859219 Msa0066380:five_prime_UTR
TTGTTGGAGCTTCGTATGGG+TGG 0.585451 1_2:-29858310 Msa0066380:five_prime_UTR
ATGTTGTTGGAGCTTCGTAT+GGG 0.587954 1_2:-29858313 Msa0066380:five_prime_UTR
TATCATTTATCTCGCACCGA+AGG 0.589231 1_2:-29853926 Msa0066380:three_prime_UTR
TGTGACTCTGTAATTTATGG+AGG 0.589488 1_2:-29858529 Msa0066380:five_prime_UTR
GTCGTTCTGTGATATGTCAA+GGG 0.590443 1_2:-29854819 Msa0066380:CDS
TGCAACTGCAGAAATACAGA+TGG 0.592512 1_2:+29858412 None:intergenic
CAACGTAAGCATATGCAACT+GGG 0.592631 1_2:+29858558 None:intergenic
TGCGGGAGCTCTAGTGCACC+GGG 0.594741 1_2:-29859259 Msa0066380:five_prime_UTR
TCATGTGACTGAAAGGTCAC+AGG 0.595007 1_2:-29859362 Msa0066380:five_prime_UTR
CTTTCGCAGGGCATCCGAAG+TGG 0.599862 1_2:-29858586 Msa0066380:five_prime_UTR
AATGAAGCACAAATACTCCT+CGG 0.601797 1_2:-29859123 Msa0066380:five_prime_UTR
GCTTACCACACTTGTTACAA+TGG 0.603038 1_2:+29855520 None:intergenic
ATTGTTGTCATGTGACTGAA+AGG 0.605967 1_2:-29859369 Msa0066380:five_prime_UTR
GTTGAATTATATCAAACTCG+AGG 0.606130 1_2:-29858907 Msa0066380:five_prime_UTR
CGAGCCAAACGAACAAACAA+GGG 0.611141 1_2:+29859233 None:intergenic
GTGTACAATACACCAAATGG+TGG 0.611731 1_2:-29859305 Msa0066380:five_prime_UTR
GGTGTTTACCTGGCTTGATG+GGG 0.611927 1_2:-29857633 Msa0066380:five_prime_UTR
ATCAACTATATCTAGAAGCA+GGG 0.612626 1_2:+29857535 None:intergenic
ATGAAATGAGAGAACATCAC+CGG 0.612682 1_2:-29854951 Msa0066380:intron
TTATGGATTGTATGTCCGCA+CGG 0.613243 1_2:+29854985 None:intergenic
AGCTTGTATCATGGGTGATG+TGG 0.616132 1_2:-29857496 Msa0066380:exon
ATAATCATATGTGTGGGTGT+CGG 0.617073 1_2:+29859065 None:intergenic
CTAGAGCTCCCGCATATGCA+GGG 0.618468 1_2:+29859268 None:intergenic
GTATTTGCATTCAGACACAA+TGG 0.619437 1_2:-29853972 Msa0066380:three_prime_UTR
GATTTGAGCTTAATACCTTG+AGG 0.620615 1_2:+29853775 None:intergenic
ATTAATATAATCATATGTGT+GGG 0.621241 1_2:+29859059 None:intergenic
CATGATAGGTATCTGACACC+AGG 0.624745 1_2:+29859089 None:intergenic
TTGTCGCCATTGTCACAATG+AGG 0.627282 1_2:-29857178 Msa0066380:CDS
TATTCCATTGTGTCTAAGCG+GGG 0.629234 1_2:+29854148 None:intergenic
AGGTAGAGAAGTCTTTCGCA+GGG 0.631256 1_2:-29858598 Msa0066380:five_prime_UTR
AGAACGACTTCGAACATAGA+GGG 0.631596 1_2:+29854834 None:intergenic
CTAATAACTACGTCACCTGA+AGG 0.633698 1_2:+29858096 None:intergenic
GTGACTCTGTAATTTATGGA+GGG 0.634692 1_2:-29858528 Msa0066380:five_prime_UTR
CAGCCAAATTGTATTAACTG+TGG 0.635426 1_2:-29856200 Msa0066380:CDS
ATAATCCTAAAACTTCTACA+AGG 0.635838 1_2:+29857598 None:intergenic
CAGACGAGAGGATGAGCTAG+TGG 0.638322 1_2:-29854274 Msa0066380:exon
TTCATGTCTCGCAGTCACCA+TGG 0.638325 1_2:-29858829 Msa0066380:five_prime_UTR
GCAACTGGGTAGTTCCACTT+CGG 0.639955 1_2:+29858572 None:intergenic
ACTCTGTAATTTATGGAGGG+AGG 0.643858 1_2:-29858525 Msa0066380:five_prime_UTR
TTACAATTATGAATACTCAA+CGG 0.646084 1_2:+29858871 None:intergenic
GCAACTGCAGAAATACAGAT+GGG 0.651069 1_2:+29858413 None:intergenic
TCAACCCCGCTTAGACACAA+TGG 0.654486 1_2:-29854152 Msa0066380:three_prime_UTR
TGCAGAAATACAGATGGGCA+AGG 0.655762 1_2:+29858418 None:intergenic
ATTATTCCATTGTGTCTAAG+CGG 0.660087 1_2:+29854146 None:intergenic
ATGGGCAAGGCATTAAAAGG+AGG 0.664834 1_2:+29858431 None:intergenic
TGTACAATACACCAAATGGT+GGG 0.671227 1_2:-29859304 Msa0066380:five_prime_UTR
GAGATTGTTGTTATGCCGTG+CGG 0.675160 1_2:-29855000 Msa0066380:CDS
ACCAGGACACACCTAATCCG+AGG 0.678669 1_2:+29859106 None:intergenic
TCATGGTGAAGACTATATTG+GGG 0.680530 1_2:-29858035 Msa0066380:five_prime_UTR
GAGTTTGATATAATTCAACA+GGG 0.682620 1_2:+29858911 None:intergenic
CTTGAAGATAGATTGATCGG+AGG 0.683919 1_2:-29859704 Msa0066380:five_prime_UTR
TATAACACACGACAGACGAG+AGG 0.688676 1_2:-29854286 Msa0066380:CDS
ATTGATATGAGTGTGTACCA+AGG 0.697098 1_2:-29859166 Msa0066380:five_prime_UTR
AAATTCCACAGCCATTACAA+TGG 0.701862 1_2:+29855950 None:intergenic
AGTTTGATATAATTCAACAG+GGG 0.721442 1_2:+29858912 None:intergenic
TGGATCCTGTGCAATGACTG+CGG 0.725144 1_2:-29854367 Msa0066380:CDS
TGCTGGTTACAGTTGCTCTG+CGG 0.730508 1_2:-29857684 Msa0066380:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGACTAATTTTATAAA+AGG + chr1_2:29856225-29856244 None:intergenic 10.0%
!!! TTGTGATATTTTTAAATTTT+TGG - chr1_2:29856453-29856472 Msa0066380:intron 10.0%
!!! TGTGATATTTTTAAATTTTT+GGG - chr1_2:29856454-29856473 Msa0066380:intron 10.0%
!! AAATTATTCTATTAGAATTA+AGG + chr1_2:29856657-29856676 None:intergenic 10.0%
!!! ATAAAGACTAATTTTATAAA+AGG + chr1_2:29856225-29856244 None:intergenic 10.0%
!!! TTGTGATATTTTTAAATTTT+TGG - chr1_2:29856453-29856472 Msa0066380:intron 10.0%
!!! TGTGATATTTTTAAATTTTT+GGG - chr1_2:29856454-29856473 Msa0066380:intron 10.0%
!! AAATTATTCTATTAGAATTA+AGG + chr1_2:29856657-29856676 None:intergenic 10.0%
!! TTATTATTTAGATTATACGT+TGG - chr1_2:29853947-29853966 Msa0066380:three_prime_UTR 15.0%
!! ATTAATATAATCATATGTGT+GGG + chr1_2:29854433-29854452 None:intergenic 15.0%
!! ATTATATATATACATGGATT+TGG - chr1_2:29855479-29855498 Msa0066380:intron 15.0%
!!! GTGATATTTTTAAATTTTTG+GGG - chr1_2:29856455-29856474 Msa0066380:intron 15.0%
!! TACTGATATTGAATTTATAA+AGG - chr1_2:29856773-29856792 Msa0066380:intron 15.0%
!! AAAAAATAGTATATAATCAC+AGG + chr1_2:29856868-29856887 None:intergenic 15.0%
!!! GCAAATGATAAATATTTTAT+GGG + chr1_2:29857723-29857742 None:intergenic 15.0%
!!! TGCAAATGATAAATATTTTA+TGG + chr1_2:29857724-29857743 None:intergenic 15.0%
!! ATTATATTCATAACTATTAC+AGG + chr1_2:29858258-29858277 None:intergenic 15.0%
!! ATAGTTATGAATATAATTCA+CGG - chr1_2:29858261-29858280 Msa0066380:five_prime_UTR 15.0%
!!! TAGTTTTTTTTTTCTATTGT+AGG - chr1_2:29859634-29859653 Msa0066380:five_prime_UTR 15.0%
!! TTATTATTTAGATTATACGT+TGG - chr1_2:29853947-29853966 Msa0066380:three_prime_UTR 15.0%
!! ATTAATATAATCATATGTGT+GGG + chr1_2:29854433-29854452 None:intergenic 15.0%
!! ATTATATATATACATGGATT+TGG - chr1_2:29855479-29855498 Msa0066380:intron 15.0%
!!! GTGATATTTTTAAATTTTTG+GGG - chr1_2:29856455-29856474 Msa0066380:intron 15.0%
!! TACTGATATTGAATTTATAA+AGG - chr1_2:29856773-29856792 Msa0066380:intron 15.0%
!! AAAAAATAGTATATAATCAC+AGG + chr1_2:29856868-29856887 None:intergenic 15.0%
!!! GCAAATGATAAATATTTTAT+GGG + chr1_2:29857723-29857742 None:intergenic 15.0%
!!! TGCAAATGATAAATATTTTA+TGG + chr1_2:29857724-29857743 None:intergenic 15.0%
!! ATTATATTCATAACTATTAC+AGG + chr1_2:29858258-29858277 None:intergenic 15.0%
!! ATAGTTATGAATATAATTCA+CGG - chr1_2:29858261-29858280 Msa0066380:five_prime_UTR 15.0%
!!! TAGTTTTTTTTTTCTATTGT+AGG - chr1_2:29859634-29859653 Msa0066380:five_prime_UTR 15.0%
!! AATATAAAAACGATTTGACA+AGG + chr1_2:29853864-29853883 None:intergenic 20.0%
!! CATTAATATAATCATATGTG+TGG + chr1_2:29854434-29854453 None:intergenic 20.0%
!! TTTAATAATGTTCATTGCTT+AGG - chr1_2:29854514-29854533 Msa0066380:intron 20.0%
!! TTACAATTATGAATACTCAA+CGG + chr1_2:29854621-29854640 None:intergenic 20.0%
!! GAGTATTCATAATTGTAATT+AGG - chr1_2:29854623-29854642 Msa0066380:intron 20.0%
!! ATGAATGATTATATCAGTTT+AGG - chr1_2:29854864-29854883 Msa0066380:intron 20.0%
!!! ATTATATCAGTTTAGGTTTT+AGG - chr1_2:29854871-29854890 Msa0066380:intron 20.0%
!! TGATTTATTGCTTTCAAAAT+AGG - chr1_2:29855621-29855640 Msa0066380:intron 20.0%
!! TCAATGCTTATTGTAATTTA+TGG - chr1_2:29855702-29855721 Msa0066380:intron 20.0%
!! AAATTACGCTTATGAAAAAT+AGG + chr1_2:29856358-29856377 None:intergenic 20.0%
!! TAAAAAATAAGTAATGAGAC+CGG + chr1_2:29856397-29856416 None:intergenic 20.0%
!! ATTTGTGGATATTTCAATTA+AGG + chr1_2:29856596-29856615 None:intergenic 20.0%
!! TGATATTGAATTTATAAAGG+AGG - chr1_2:29856776-29856795 Msa0066380:intron 20.0%
!! CATGCATAAAGAAAATAAAA+TGG - chr1_2:29857009-29857028 Msa0066380:intron 20.0%
!! TAACAAATTGCATCATTATT+AGG - chr1_2:29857594-29857613 Msa0066380:five_prime_UTR 20.0%
!! AACAAATTGCATCATTATTA+GGG - chr1_2:29857595-29857614 Msa0066380:five_prime_UTR 20.0%
!! AAAAACAAAATGAAACAAAG+GGG + chr1_2:29857646-29857665 None:intergenic 20.0%
!! GAAAAACAAAATGAAACAAA+GGG + chr1_2:29857647-29857666 None:intergenic 20.0%
!! TGAAAAACAAAATGAAACAA+AGG + chr1_2:29857648-29857667 None:intergenic 20.0%
!!! TGATAAATATTTTATGGGAT+CGG + chr1_2:29857718-29857737 None:intergenic 20.0%
!! ATATCAAAATCAATCAGTTA+AGG + chr1_2:29857914-29857933 None:intergenic 20.0%
!!! CTGATACAATAATTTTTTAC+TGG + chr1_2:29858314-29858333 None:intergenic 20.0%
!!! ATGCTAGAGTTATTTTAAAT+TGG - chr1_2:29858371-29858390 Msa0066380:five_prime_UTR 20.0%
!! ATAAGAACAATATTCAGAAA+GGG + chr1_2:29858603-29858622 None:intergenic 20.0%
!! AATAAGAACAATATTCAGAA+AGG + chr1_2:29858604-29858623 None:intergenic 20.0%
!! TTATTGACATCTTAAATTCA+AGG - chr1_2:29859071-29859090 Msa0066380:five_prime_UTR 20.0%
!! TATTGACATCTTAAATTCAA+GGG - chr1_2:29859072-29859091 Msa0066380:five_prime_UTR 20.0%
!!! TTCTTTTGTTTAGTTTAGTT+TGG - chr1_2:29859393-29859412 Msa0066380:five_prime_UTR 20.0%
!! AAAATTGAAAAACTGAACAT+GGG + chr1_2:29859489-29859508 None:intergenic 20.0%
!! AATATAAAAACGATTTGACA+AGG + chr1_2:29853864-29853883 None:intergenic 20.0%
!! CATTAATATAATCATATGTG+TGG + chr1_2:29854434-29854453 None:intergenic 20.0%
!! TTTAATAATGTTCATTGCTT+AGG - chr1_2:29854514-29854533 Msa0066380:intron 20.0%
!! TTACAATTATGAATACTCAA+CGG + chr1_2:29854621-29854640 None:intergenic 20.0%
!! GAGTATTCATAATTGTAATT+AGG - chr1_2:29854623-29854642 Msa0066380:intron 20.0%
!! ATGAATGATTATATCAGTTT+AGG - chr1_2:29854864-29854883 Msa0066380:intron 20.0%
!!! ATTATATCAGTTTAGGTTTT+AGG - chr1_2:29854871-29854890 Msa0066380:intron 20.0%
!! TGATTTATTGCTTTCAAAAT+AGG - chr1_2:29855621-29855640 Msa0066380:intron 20.0%
!! TCAATGCTTATTGTAATTTA+TGG - chr1_2:29855702-29855721 Msa0066380:intron 20.0%
!! AAATTACGCTTATGAAAAAT+AGG + chr1_2:29856358-29856377 None:intergenic 20.0%
!! TAAAAAATAAGTAATGAGAC+CGG + chr1_2:29856397-29856416 None:intergenic 20.0%
!! ATTTGTGGATATTTCAATTA+AGG + chr1_2:29856596-29856615 None:intergenic 20.0%
!! TGATATTGAATTTATAAAGG+AGG - chr1_2:29856776-29856795 Msa0066380:intron 20.0%
!! CATGCATAAAGAAAATAAAA+TGG - chr1_2:29857009-29857028 Msa0066380:intron 20.0%
!! TAACAAATTGCATCATTATT+AGG - chr1_2:29857594-29857613 Msa0066380:five_prime_UTR 20.0%
!! AACAAATTGCATCATTATTA+GGG - chr1_2:29857595-29857614 Msa0066380:five_prime_UTR 20.0%
!! AAAAACAAAATGAAACAAAG+GGG + chr1_2:29857646-29857665 None:intergenic 20.0%
!! GAAAAACAAAATGAAACAAA+GGG + chr1_2:29857647-29857666 None:intergenic 20.0%
!! TGAAAAACAAAATGAAACAA+AGG + chr1_2:29857648-29857667 None:intergenic 20.0%
!!! TGATAAATATTTTATGGGAT+CGG + chr1_2:29857718-29857737 None:intergenic 20.0%
!! ATATCAAAATCAATCAGTTA+AGG + chr1_2:29857914-29857933 None:intergenic 20.0%
!!! CTGATACAATAATTTTTTAC+TGG + chr1_2:29858314-29858333 None:intergenic 20.0%
!!! ATGCTAGAGTTATTTTAAAT+TGG - chr1_2:29858371-29858390 Msa0066380:five_prime_UTR 20.0%
!! ATAAGAACAATATTCAGAAA+GGG + chr1_2:29858603-29858622 None:intergenic 20.0%
!! AATAAGAACAATATTCAGAA+AGG + chr1_2:29858604-29858623 None:intergenic 20.0%
!! TTATTGACATCTTAAATTCA+AGG - chr1_2:29859071-29859090 Msa0066380:five_prime_UTR 20.0%
!! TATTGACATCTTAAATTCAA+GGG - chr1_2:29859072-29859091 Msa0066380:five_prime_UTR 20.0%
!!! TTCTTTTGTTTAGTTTAGTT+TGG - chr1_2:29859393-29859412 Msa0066380:five_prime_UTR 20.0%
!! AAAATTGAAAAACTGAACAT+GGG + chr1_2:29859489-29859508 None:intergenic 20.0%
! GAATATGCAAAATTCAATCA+AGG + chr1_2:29853983-29854002 None:intergenic 25.0%
! TAGAAATAACTTCTTGTGTA+AGG - chr1_2:29854159-29854178 Msa0066380:three_prime_UTR 25.0%
! ATTCATTGCCTTAAAACAAA+AGG + chr1_2:29854349-29854368 None:intergenic 25.0%
! AGTTTGATATAATTCAACAG+GGG + chr1_2:29854580-29854599 None:intergenic 25.0%
! GAGTTTGATATAATTCAACA+GGG + chr1_2:29854581-29854600 None:intergenic 25.0%
! CAATCAATATTATTTCCCTA+AGG + chr1_2:29854797-29854816 None:intergenic 25.0%
!! TTGATTTTATTGTCCACAAA+GGG + chr1_2:29855559-29855578 None:intergenic 25.0%
! TTATTGCTTTCAAAATAGGT+TGG - chr1_2:29855625-29855644 Msa0066380:intron 25.0%
!!! AAATAGGTTGGAATTTCTTT+TGG - chr1_2:29855637-29855656 Msa0066380:intron 25.0%
!! ATAATATCATTTTGTGTTGC+TGG - chr1_2:29855788-29855807 Msa0066380:intron 25.0%
! ATAATCCTAAAACTTCTACA+AGG + chr1_2:29855894-29855913 None:intergenic 25.0%
!! ACAAATGATTTGCAAGATAA+AGG - chr1_2:29856129-29856148 Msa0066380:intron 25.0%
! ATAAAGGATACATGGAATAT+GGG - chr1_2:29856145-29856164 Msa0066380:intron 25.0%
!! ACTAATTTTATAAAAGGAGC+AGG + chr1_2:29856219-29856238 None:intergenic 25.0%
!! TAATTTTGTGCACTTTATTC+AGG - chr1_2:29856671-29856690 Msa0066380:intron 25.0%
! TGCTTACATGTATATAATCA+GGG + chr1_2:29856989-29857008 None:intergenic 25.0%
! TCATTGAGAAAAACAAAGAT+TGG + chr1_2:29857164-29857183 None:intergenic 25.0%
!!! TGATGCTTTTTACTAATTTC+AGG - chr1_2:29857264-29857283 Msa0066380:intron 25.0%
! TATGCAACATTAGAACAAAA+AGG + chr1_2:29857394-29857413 None:intergenic 25.0%
! AGATATCTGCATCATATAAA+AGG + chr1_2:29857508-29857527 None:intergenic 25.0%
! TATGAAATGATAATCTGGTT+AGG - chr1_2:29857567-29857586 Msa0066380:five_prime_UTR 25.0%
! AAAACAAAATGAAACAAAGG+GGG + chr1_2:29857645-29857664 None:intergenic 25.0%
! CAAATAAATCCCTAAAAACA+GGG + chr1_2:29857779-29857798 None:intergenic 25.0%
! CAAAATAGCAAGTACAAATA+TGG + chr1_2:29857821-29857840 None:intergenic 25.0%
!! GGTAACATTTACAATTTTCA+TGG - chr1_2:29858171-29858190 Msa0066380:five_prime_UTR 25.0%
!!! AAGTCTGCTTTTTATATTTC+TGG - chr1_2:29858409-29858428 Msa0066380:five_prime_UTR 25.0%
!! TTTCATCTATACAGCTTTTA+TGG + chr1_2:29858524-29858543 None:intergenic 25.0%
!!! ATTTTATTTTGGTATTGCTC+AGG + chr1_2:29858737-29858756 None:intergenic 25.0%
! TGAGCAATACCAAAATAAAA+TGG - chr1_2:29858736-29858755 Msa0066380:five_prime_UTR 25.0%
!!! GGTATTTATTTTTGTTCTGT+TGG - chr1_2:29858887-29858906 Msa0066380:five_prime_UTR 25.0%
!!! TCTGTTGGTTCATTAATTTT+TGG - chr1_2:29858902-29858921 Msa0066380:five_prime_UTR 25.0%
! ATTGACATCTTAAATTCAAG+GGG - chr1_2:29859073-29859092 Msa0066380:five_prime_UTR 25.0%
! ATGGAAACTTTCAATCATAA+AGG + chr1_2:29859241-29859260 None:intergenic 25.0%
!!! TTTTGTTTAGTTTAGTTTGG+AGG - chr1_2:29859396-29859415 Msa0066380:five_prime_UTR 25.0%
! AAGATAAAAGAAGACTTAGA+TGG + chr1_2:29859435-29859454 None:intergenic 25.0%
! GAAAATTGAAAAACTGAACA+TGG + chr1_2:29859490-29859509 None:intergenic 25.0%
! GAATATGCAAAATTCAATCA+AGG + chr1_2:29853983-29854002 None:intergenic 25.0%
! TAGAAATAACTTCTTGTGTA+AGG - chr1_2:29854159-29854178 Msa0066380:three_prime_UTR 25.0%
! ATTCATTGCCTTAAAACAAA+AGG + chr1_2:29854349-29854368 None:intergenic 25.0%
! AGTTTGATATAATTCAACAG+GGG + chr1_2:29854580-29854599 None:intergenic 25.0%
! GAGTTTGATATAATTCAACA+GGG + chr1_2:29854581-29854600 None:intergenic 25.0%
! CAATCAATATTATTTCCCTA+AGG + chr1_2:29854797-29854816 None:intergenic 25.0%
!! TTGATTTTATTGTCCACAAA+GGG + chr1_2:29855559-29855578 None:intergenic 25.0%
! TTATTGCTTTCAAAATAGGT+TGG - chr1_2:29855625-29855644 Msa0066380:intron 25.0%
!!! AAATAGGTTGGAATTTCTTT+TGG - chr1_2:29855637-29855656 Msa0066380:intron 25.0%
!! ATAATATCATTTTGTGTTGC+TGG - chr1_2:29855788-29855807 Msa0066380:intron 25.0%
! ATAATCCTAAAACTTCTACA+AGG + chr1_2:29855894-29855913 None:intergenic 25.0%
!! ACAAATGATTTGCAAGATAA+AGG - chr1_2:29856129-29856148 Msa0066380:intron 25.0%
! ATAAAGGATACATGGAATAT+GGG - chr1_2:29856145-29856164 Msa0066380:intron 25.0%
!! ACTAATTTTATAAAAGGAGC+AGG + chr1_2:29856219-29856238 None:intergenic 25.0%
!! TAATTTTGTGCACTTTATTC+AGG - chr1_2:29856671-29856690 Msa0066380:intron 25.0%
! TGCTTACATGTATATAATCA+GGG + chr1_2:29856989-29857008 None:intergenic 25.0%
! TCATTGAGAAAAACAAAGAT+TGG + chr1_2:29857164-29857183 None:intergenic 25.0%
!!! TGATGCTTTTTACTAATTTC+AGG - chr1_2:29857264-29857283 Msa0066380:intron 25.0%
! TATGCAACATTAGAACAAAA+AGG + chr1_2:29857394-29857413 None:intergenic 25.0%
! AGATATCTGCATCATATAAA+AGG + chr1_2:29857508-29857527 None:intergenic 25.0%
! TATGAAATGATAATCTGGTT+AGG - chr1_2:29857567-29857586 Msa0066380:five_prime_UTR 25.0%
! AAAACAAAATGAAACAAAGG+GGG + chr1_2:29857645-29857664 None:intergenic 25.0%
! CAAATAAATCCCTAAAAACA+GGG + chr1_2:29857779-29857798 None:intergenic 25.0%
! CAAAATAGCAAGTACAAATA+TGG + chr1_2:29857821-29857840 None:intergenic 25.0%
!! GGTAACATTTACAATTTTCA+TGG - chr1_2:29858171-29858190 Msa0066380:five_prime_UTR 25.0%
!!! AAGTCTGCTTTTTATATTTC+TGG - chr1_2:29858409-29858428 Msa0066380:five_prime_UTR 25.0%
!! TTTCATCTATACAGCTTTTA+TGG + chr1_2:29858524-29858543 None:intergenic 25.0%
!!! ATTTTATTTTGGTATTGCTC+AGG + chr1_2:29858737-29858756 None:intergenic 25.0%
! TGAGCAATACCAAAATAAAA+TGG - chr1_2:29858736-29858755 Msa0066380:five_prime_UTR 25.0%
!!! GGTATTTATTTTTGTTCTGT+TGG - chr1_2:29858887-29858906 Msa0066380:five_prime_UTR 25.0%
!!! TCTGTTGGTTCATTAATTTT+TGG - chr1_2:29858902-29858921 Msa0066380:five_prime_UTR 25.0%
! ATTGACATCTTAAATTCAAG+GGG - chr1_2:29859073-29859092 Msa0066380:five_prime_UTR 25.0%
! ATGGAAACTTTCAATCATAA+AGG + chr1_2:29859241-29859260 None:intergenic 25.0%
!!! TTTTGTTTAGTTTAGTTTGG+AGG - chr1_2:29859396-29859415 Msa0066380:five_prime_UTR 25.0%
! AAGATAAAAGAAGACTTAGA+TGG + chr1_2:29859435-29859454 None:intergenic 25.0%
! GAAAATTGAAAAACTGAACA+TGG + chr1_2:29859490-29859509 None:intergenic 25.0%
AGAAAGTGAAGATGAACAAA+CGG + chr1_2:29853834-29853853 None:intergenic 30.0%
AAACGATTTGACAAGGAAAA+TGG + chr1_2:29853857-29853876 None:intergenic 30.0%
!! TTCGTTTTTGTTTGTTCGTT+TGG - chr1_2:29854066-29854085 Msa0066380:three_prime_UTR 30.0%
! TTAGGTTGTAACCCTTTAAT+AGG - chr1_2:29854532-29854551 Msa0066380:intron 30.0%
TAACCCTTTAATAGGATTAC+TGG - chr1_2:29854540-29854559 Msa0066380:intron 30.0%
GAACCAGTAATCCTATTAAA+GGG + chr1_2:29854546-29854565 None:intergenic 30.0%
CGAGTTTGATATAATTCAAC+AGG + chr1_2:29854582-29854601 None:intergenic 30.0%
GTTGAATTATATCAAACTCG+AGG - chr1_2:29854582-29854601 Msa0066380:intron 30.0%
TCAAAACACAAACCATAATC+AGG + chr1_2:29854726-29854745 None:intergenic 30.0%
TTACATAGCTGAATAACCTT+AGG - chr1_2:29854778-29854797 Msa0066380:CDS 30.0%
TACATAGCTGAATAACCTTA+GGG - chr1_2:29854779-29854798 Msa0066380:CDS 30.0%
! TATTTGAGAGCGAAACTTTT+AGG - chr1_2:29854818-29854837 Msa0066380:CDS 30.0%
AGATGTGACTCTGTAATTTA+TGG - chr1_2:29854957-29854976 Msa0066380:CDS 30.0%
CAAATCTGAAAGAAAATTGC+TGG + chr1_2:29855006-29855025 None:intergenic 30.0%
! CAGCAATTTTCTTTCAGATT+TGG - chr1_2:29855004-29855023 Msa0066380:CDS 30.0%
!!! CTGTCTTATTTTTTCTAGCA+TGG - chr1_2:29855127-29855146 Msa0066380:intron 30.0%
!! TGTCCTTTTTGTTTCTTTGT+CGG - chr1_2:29855204-29855223 Msa0066380:intron 30.0%
! GAATGGATTTGATACTAGTT+TGG - chr1_2:29855237-29855256 Msa0066380:intron 30.0%
CTTCCAACAAAGACAAAAAA+CGG + chr1_2:29855317-29855336 None:intergenic 30.0%
CAAATTGAGGTTAAACAAGA+AGG + chr1_2:29855356-29855375 None:intergenic 30.0%
! CTTCTTGTTTAACCTCAATT+TGG - chr1_2:29855354-29855373 Msa0066380:intron 30.0%
TATCATGGTGAAGACTATAT+TGG - chr1_2:29855452-29855471 Msa0066380:intron 30.0%
ATCATGGTGAAGACTATATT+GGG - chr1_2:29855453-29855472 Msa0066380:intron 30.0%
GGGGTGATTATATATATACA+TGG - chr1_2:29855473-29855492 Msa0066380:intron 30.0%
! TACATGGATTTGGTAAGTTT+CGG - chr1_2:29855489-29855508 Msa0066380:intron 30.0%
!! GTTGATTTTATTGTCCACAA+AGG + chr1_2:29855560-29855579 None:intergenic 30.0%
CAAGAAATCAACAATGCATT+TGG - chr1_2:29855835-29855854 Msa0066380:intron 30.0%
! ATATGCCTTGTAGAAGTTTT+AGG - chr1_2:29855886-29855905 Msa0066380:intron 30.0%
! CTAAATTTGTTCGTAAATGC+AGG - chr1_2:29855916-29855935 Msa0066380:intron 30.0%
ATCAACTATATCTAGAAGCA+GGG + chr1_2:29855957-29855976 None:intergenic 30.0%
TATCAACTATATCTAGAAGC+AGG + chr1_2:29855958-29855977 None:intergenic 30.0%
! TTTGAAGATAGCTTGTATCA+TGG - chr1_2:29855984-29856003 Msa0066380:intron 30.0%
! TTGAAGATAGCTTGTATCAT+GGG - chr1_2:29855985-29856004 Msa0066380:intron 30.0%
TAATCCTCCAAAATCAAATC+TGG - chr1_2:29856068-29856087 Msa0066380:intron 30.0%
!! AAGGATTCCAGATTTGATTT+TGG + chr1_2:29856078-29856097 None:intergenic 30.0%
TTTGCAAGATAAAGGATACA+TGG - chr1_2:29856137-29856156 Msa0066380:intron 30.0%
GATAAAGGATACATGGAATA+TGG - chr1_2:29856144-29856163 Msa0066380:intron 30.0%
TCAAAAATCTCATTGCAACA+AGG + chr1_2:29856291-29856310 None:intergenic 30.0%
ACGCTTATGAAAAATAGGTA+AGG + chr1_2:29856353-29856372 None:intergenic 30.0%
TTTGTTTCATATCATTCAGC+CGG - chr1_2:29856375-29856394 Msa0066380:intron 30.0%
ATAAAAACACCTGTTTGACT+TGG + chr1_2:29856559-29856578 None:intergenic 30.0%
!! AACAGGTGTTTTTATCAACT+TGG - chr1_2:29856564-29856583 Msa0066380:intron 30.0%
!! ACAGGTGTTTTTATCAACTT+GGG - chr1_2:29856565-29856584 Msa0066380:intron 30.0%
GTGCTTACATGTATATAATC+AGG + chr1_2:29856990-29857009 None:intergenic 30.0%
ACACCACAGTTAATACAATT+TGG + chr1_2:29857295-29857314 None:intergenic 30.0%
TATTAACTGTGGTGTTTGTA+TGG - chr1_2:29857300-29857319 Msa0066380:intron 30.0%
ATTAACTGTGGTGTTTGTAT+GGG - chr1_2:29857301-29857320 Msa0066380:intron 30.0%
ATGATGTGAGTATTAATCCT+AGG - chr1_2:29857359-29857378 Msa0066380:CDS 30.0%
CTGCATCATATAAAAGGAAA+CGG + chr1_2:29857502-29857521 None:intergenic 30.0%
AATTGCATCATTATTAGGGA+TGG - chr1_2:29857599-29857618 Msa0066380:five_prime_UTR 30.0%
!!! GATGGTAACATGTTTTAATG+CGG - chr1_2:29857617-29857636 Msa0066380:five_prime_UTR 30.0%
! AAATATTTTATGGGATCGGA+GGG + chr1_2:29857714-29857733 None:intergenic 30.0%
! TAAATATTTTATGGGATCGG+AGG + chr1_2:29857715-29857734 None:intergenic 30.0%
!!! TCAACTTTACCCTGTTTTTA+GGG - chr1_2:29857767-29857786 Msa0066380:five_prime_UTR 30.0%
CCAAATAAATCCCTAAAAAC+AGG + chr1_2:29857780-29857799 None:intergenic 30.0%
!!! CCTGTTTTTAGGGATTTATT+TGG - chr1_2:29857777-29857796 Msa0066380:five_prime_UTR 30.0%
AAAATCAATCAGTTAAGGCA+AGG + chr1_2:29857909-29857928 None:intergenic 30.0%
!!! TGATATTTTTTGCACAGAAC+TGG - chr1_2:29857928-29857947 Msa0066380:intron 30.0%
CGTTTGACATTCATGATTAT+AGG - chr1_2:29858067-29858086 Msa0066380:five_prime_UTR 30.0%
!!! TCTGCTTTTTATATTTCTGG+AGG - chr1_2:29858412-29858431 Msa0066380:five_prime_UTR 30.0%
CTTGTATTTGATTGTATACC+AGG - chr1_2:29858624-29858643 Msa0066380:five_prime_UTR 30.0%
!! GAGAACTGACCATTTTATTT+TGG + chr1_2:29858748-29858767 None:intergenic 30.0%
CTATACTTGATATGAATGAC+AGG + chr1_2:29858937-29858956 None:intergenic 30.0%
! TTCATGTCTTATTGTTGCTT+TGG - chr1_2:29858973-29858992 Msa0066380:five_prime_UTR 30.0%
CCAAATTAAGTGAGATGAAA+TGG + chr1_2:29859260-29859279 None:intergenic 30.0%
CCATTTCATCTCACTTAATT+TGG - chr1_2:29859257-29859276 Msa0066380:five_prime_UTR 30.0%
! CTCAATGCTTTTCTCTTTTT+TGG - chr1_2:29859296-29859315 Msa0066380:five_prime_UTR 30.0%
!!! TTTTCTCTTTTTTGGCTACA+AGG - chr1_2:29859304-29859323 Msa0066380:five_prime_UTR 30.0%
ATTATTCCATTGTGTCTAAG+CGG + chr1_2:29859346-29859365 None:intergenic 30.0%
AAACTAGATTAAACCACCTT+CGG + chr1_2:29859582-29859601 None:intergenic 30.0%
AGAAAGTGAAGATGAACAAA+CGG + chr1_2:29853834-29853853 None:intergenic 30.0%
AAACGATTTGACAAGGAAAA+TGG + chr1_2:29853857-29853876 None:intergenic 30.0%
!! TTCGTTTTTGTTTGTTCGTT+TGG - chr1_2:29854066-29854085 Msa0066380:three_prime_UTR 30.0%
! TTAGGTTGTAACCCTTTAAT+AGG - chr1_2:29854532-29854551 Msa0066380:intron 30.0%
TAACCCTTTAATAGGATTAC+TGG - chr1_2:29854540-29854559 Msa0066380:intron 30.0%
GAACCAGTAATCCTATTAAA+GGG + chr1_2:29854546-29854565 None:intergenic 30.0%
CGAGTTTGATATAATTCAAC+AGG + chr1_2:29854582-29854601 None:intergenic 30.0%
GTTGAATTATATCAAACTCG+AGG - chr1_2:29854582-29854601 Msa0066380:intron 30.0%
TCAAAACACAAACCATAATC+AGG + chr1_2:29854726-29854745 None:intergenic 30.0%
TTACATAGCTGAATAACCTT+AGG - chr1_2:29854778-29854797 Msa0066380:CDS 30.0%
TACATAGCTGAATAACCTTA+GGG - chr1_2:29854779-29854798 Msa0066380:CDS 30.0%
! TATTTGAGAGCGAAACTTTT+AGG - chr1_2:29854818-29854837 Msa0066380:CDS 30.0%
AGATGTGACTCTGTAATTTA+TGG - chr1_2:29854957-29854976 Msa0066380:CDS 30.0%
CAAATCTGAAAGAAAATTGC+TGG + chr1_2:29855006-29855025 None:intergenic 30.0%
! CAGCAATTTTCTTTCAGATT+TGG - chr1_2:29855004-29855023 Msa0066380:CDS 30.0%
!!! CTGTCTTATTTTTTCTAGCA+TGG - chr1_2:29855127-29855146 Msa0066380:intron 30.0%
!! TGTCCTTTTTGTTTCTTTGT+CGG - chr1_2:29855204-29855223 Msa0066380:intron 30.0%
! GAATGGATTTGATACTAGTT+TGG - chr1_2:29855237-29855256 Msa0066380:intron 30.0%
CTTCCAACAAAGACAAAAAA+CGG + chr1_2:29855317-29855336 None:intergenic 30.0%
CAAATTGAGGTTAAACAAGA+AGG + chr1_2:29855356-29855375 None:intergenic 30.0%
! CTTCTTGTTTAACCTCAATT+TGG - chr1_2:29855354-29855373 Msa0066380:intron 30.0%
TATCATGGTGAAGACTATAT+TGG - chr1_2:29855452-29855471 Msa0066380:intron 30.0%
ATCATGGTGAAGACTATATT+GGG - chr1_2:29855453-29855472 Msa0066380:intron 30.0%
GGGGTGATTATATATATACA+TGG - chr1_2:29855473-29855492 Msa0066380:intron 30.0%
! TACATGGATTTGGTAAGTTT+CGG - chr1_2:29855489-29855508 Msa0066380:intron 30.0%
!! GTTGATTTTATTGTCCACAA+AGG + chr1_2:29855560-29855579 None:intergenic 30.0%
CAAGAAATCAACAATGCATT+TGG - chr1_2:29855835-29855854 Msa0066380:intron 30.0%
! ATATGCCTTGTAGAAGTTTT+AGG - chr1_2:29855886-29855905 Msa0066380:intron 30.0%
! CTAAATTTGTTCGTAAATGC+AGG - chr1_2:29855916-29855935 Msa0066380:intron 30.0%
ATCAACTATATCTAGAAGCA+GGG + chr1_2:29855957-29855976 None:intergenic 30.0%
TATCAACTATATCTAGAAGC+AGG + chr1_2:29855958-29855977 None:intergenic 30.0%
! TTTGAAGATAGCTTGTATCA+TGG - chr1_2:29855984-29856003 Msa0066380:intron 30.0%
! TTGAAGATAGCTTGTATCAT+GGG - chr1_2:29855985-29856004 Msa0066380:intron 30.0%
TAATCCTCCAAAATCAAATC+TGG - chr1_2:29856068-29856087 Msa0066380:intron 30.0%
!! AAGGATTCCAGATTTGATTT+TGG + chr1_2:29856078-29856097 None:intergenic 30.0%
TTTGCAAGATAAAGGATACA+TGG - chr1_2:29856137-29856156 Msa0066380:intron 30.0%
GATAAAGGATACATGGAATA+TGG - chr1_2:29856144-29856163 Msa0066380:intron 30.0%
TCAAAAATCTCATTGCAACA+AGG + chr1_2:29856291-29856310 None:intergenic 30.0%
ACGCTTATGAAAAATAGGTA+AGG + chr1_2:29856353-29856372 None:intergenic 30.0%
TTTGTTTCATATCATTCAGC+CGG - chr1_2:29856375-29856394 Msa0066380:intron 30.0%
ATAAAAACACCTGTTTGACT+TGG + chr1_2:29856559-29856578 None:intergenic 30.0%
!! AACAGGTGTTTTTATCAACT+TGG - chr1_2:29856564-29856583 Msa0066380:intron 30.0%
!! ACAGGTGTTTTTATCAACTT+GGG - chr1_2:29856565-29856584 Msa0066380:intron 30.0%
GTGCTTACATGTATATAATC+AGG + chr1_2:29856990-29857009 None:intergenic 30.0%
ACACCACAGTTAATACAATT+TGG + chr1_2:29857295-29857314 None:intergenic 30.0%
TATTAACTGTGGTGTTTGTA+TGG - chr1_2:29857300-29857319 Msa0066380:intron 30.0%
ATTAACTGTGGTGTTTGTAT+GGG - chr1_2:29857301-29857320 Msa0066380:intron 30.0%
ATGATGTGAGTATTAATCCT+AGG - chr1_2:29857359-29857378 Msa0066380:CDS 30.0%
CTGCATCATATAAAAGGAAA+CGG + chr1_2:29857502-29857521 None:intergenic 30.0%
AATTGCATCATTATTAGGGA+TGG - chr1_2:29857599-29857618 Msa0066380:five_prime_UTR 30.0%
!!! GATGGTAACATGTTTTAATG+CGG - chr1_2:29857617-29857636 Msa0066380:five_prime_UTR 30.0%
! AAATATTTTATGGGATCGGA+GGG + chr1_2:29857714-29857733 None:intergenic 30.0%
! TAAATATTTTATGGGATCGG+AGG + chr1_2:29857715-29857734 None:intergenic 30.0%
!!! TCAACTTTACCCTGTTTTTA+GGG - chr1_2:29857767-29857786 Msa0066380:five_prime_UTR 30.0%
CCAAATAAATCCCTAAAAAC+AGG + chr1_2:29857780-29857799 None:intergenic 30.0%
!!! CCTGTTTTTAGGGATTTATT+TGG - chr1_2:29857777-29857796 Msa0066380:five_prime_UTR 30.0%
AAAATCAATCAGTTAAGGCA+AGG + chr1_2:29857909-29857928 None:intergenic 30.0%
!!! TGATATTTTTTGCACAGAAC+TGG - chr1_2:29857928-29857947 Msa0066380:intron 30.0%
CGTTTGACATTCATGATTAT+AGG - chr1_2:29858067-29858086 Msa0066380:five_prime_UTR 30.0%
!!! TCTGCTTTTTATATTTCTGG+AGG - chr1_2:29858412-29858431 Msa0066380:five_prime_UTR 30.0%
CTTGTATTTGATTGTATACC+AGG - chr1_2:29858624-29858643 Msa0066380:five_prime_UTR 30.0%
!! GAGAACTGACCATTTTATTT+TGG + chr1_2:29858748-29858767 None:intergenic 30.0%
CTATACTTGATATGAATGAC+AGG + chr1_2:29858937-29858956 None:intergenic 30.0%
! TTCATGTCTTATTGTTGCTT+TGG - chr1_2:29858973-29858992 Msa0066380:five_prime_UTR 30.0%
CCAAATTAAGTGAGATGAAA+TGG + chr1_2:29859260-29859279 None:intergenic 30.0%
CCATTTCATCTCACTTAATT+TGG - chr1_2:29859257-29859276 Msa0066380:five_prime_UTR 30.0%
! CTCAATGCTTTTCTCTTTTT+TGG - chr1_2:29859296-29859315 Msa0066380:five_prime_UTR 30.0%
!!! TTTTCTCTTTTTTGGCTACA+AGG - chr1_2:29859304-29859323 Msa0066380:five_prime_UTR 30.0%
ATTATTCCATTGTGTCTAAG+CGG + chr1_2:29859346-29859365 None:intergenic 30.0%
AAACTAGATTAAACCACCTT+CGG + chr1_2:29859582-29859601 None:intergenic 30.0%
GTCCTTGAAGATAGATTGAT+CGG - chr1_2:29853782-29853801 Msa0066380:three_prime_UTR 35.0%
ATTGTTGTCATGTGACTGAA+AGG - chr1_2:29854120-29854139 Msa0066380:three_prime_UTR 35.0%
TGTACAATACACCAAATGGT+GGG - chr1_2:29854185-29854204 Msa0066380:three_prime_UTR 35.0%
!! TACGTGGCATTTGATTTTGT+GGG - chr1_2:29854286-29854305 Msa0066380:CDS 35.0%
ATTGATATGAGTGTGTACCA+AGG - chr1_2:29854323-29854342 Msa0066380:CDS 35.0%
!!! TACCAAGGCCTTTTGTTTTA+AGG - chr1_2:29854338-29854357 Msa0066380:CDS 35.0%
AATGAAGCACAAATACTCCT+CGG - chr1_2:29854366-29854385 Msa0066380:CDS 35.0%
ATAATCATATGTGTGGGTGT+CGG + chr1_2:29854427-29854446 None:intergenic 35.0%
CGAACCAGTAATCCTATTAA+AGG + chr1_2:29854547-29854566 None:intergenic 35.0%
! AAGAAGTTTTGCGAAAACCA+TGG + chr1_2:29854680-29854699 None:intergenic 35.0%
TTTCCAGCTATGATTCAATC+CGG - chr1_2:29854698-29854717 Msa0066380:intron 35.0%
TGTGACTCTGTAATTTATGG+AGG - chr1_2:29854960-29854979 Msa0066380:CDS 35.0%
GTGACTCTGTAATTTATGGA+GGG - chr1_2:29854961-29854980 Msa0066380:CDS 35.0%
AAAAAATTGCTTCCTGCAGT+TGG + chr1_2:29855038-29855057 None:intergenic 35.0%
! TAGCATGGACTGTAAGAATT+TGG - chr1_2:29855142-29855161 Msa0066380:intron 35.0%
TGTCCGACAAAGAAACAAAA+AGG + chr1_2:29855210-29855229 None:intergenic 35.0%
TGGAAGTTGGAAGGAAAAAA+CGG + chr1_2:29855293-29855312 None:intergenic 35.0%
CAACAAAGACAAAAAACGGT+TGG + chr1_2:29855313-29855332 None:intergenic 35.0%
!!! CAACCGTTTTTTGTCTTTGT+TGG - chr1_2:29855311-29855330 Msa0066380:intron 35.0%
! AAACAAGAAGGTTTTCAGCA+GGG + chr1_2:29855344-29855363 None:intergenic 35.0%
! TAAACAAGAAGGTTTTCAGC+AGG + chr1_2:29855345-29855364 None:intergenic 35.0%
! TGTCATTAGTTTACTCCCAA+GGG - chr1_2:29855425-29855444 Msa0066380:intron 35.0%
TCATGGTGAAGACTATATTG+GGG - chr1_2:29855454-29855473 Msa0066380:intron 35.0%
CAATGCTGAACAACACTTTA+TGG - chr1_2:29855525-29855544 Msa0066380:intron 35.0%
! TCTTTTGGTAGACATGTTTC+CGG - chr1_2:29855652-29855671 Msa0066380:intron 35.0%
!! GTTTTGTTGTGTTCATCTCT+TGG - chr1_2:29855744-29855763 Msa0066380:intron 35.0%
!! GATTCCAGATTTGATTTTGG+AGG + chr1_2:29856075-29856094 None:intergenic 35.0%
CTTGTTCATATGCTTCTTTC+TGG - chr1_2:29856174-29856193 Msa0066380:CDS 35.0%
!! CAGGTGTTTTTATCAACTTG+GGG - chr1_2:29856566-29856585 Msa0066380:intron 35.0%
! GGAAAAGGTGCAAAAATTTG+TGG + chr1_2:29856611-29856630 None:intergenic 35.0%
!!! CACCTTTTCCTGTTATTTCA+TGG - chr1_2:29856621-29856640 Msa0066380:intron 35.0%
GTCCATGAAATAACAGGAAA+AGG + chr1_2:29856626-29856645 None:intergenic 35.0%
!! TTCCTGTTATTTCATGGACA+AGG - chr1_2:29856627-29856646 Msa0066380:intron 35.0%
TACCTTGTCCATGAAATAAC+AGG + chr1_2:29856632-29856651 None:intergenic 35.0%
GAATATAATACATCCCCACT+AGG - chr1_2:29856924-29856943 Msa0066380:intron 35.0%
CTGTTAAGCTTATTACTGTC+TGG - chr1_2:29857037-29857056 Msa0066380:intron 35.0%
TTAAGCTTATTACTGTCTGG+AGG - chr1_2:29857040-29857059 Msa0066380:intron 35.0%
CAGCCAAATTGTATTAACTG+TGG - chr1_2:29857289-29857308 Msa0066380:intron 35.0%
CAAAAAGGAATCTCATTCCT+AGG + chr1_2:29857379-29857398 None:intergenic 35.0%
AAATTCCACAGCCATTACAA+TGG + chr1_2:29857542-29857561 None:intergenic 35.0%
GCAGGTATGAAATGATAATC+TGG - chr1_2:29857562-29857581 Msa0066380:five_prime_UTR 35.0%
!! CTCAACTTTACCCTGTTTTT+AGG - chr1_2:29857766-29857785 Msa0066380:five_prime_UTR 35.0%
!!! TATTTTTTGCACAGAACTGG+TGG - chr1_2:29857931-29857950 Msa0066380:intron 35.0%
TTCTTCCATTGTAACAAGTG+TGG - chr1_2:29857964-29857983 Msa0066380:intron 35.0%
AAATGTTACCTCGAAACACA+CGG + chr1_2:29858161-29858180 None:intergenic 35.0%
TCATGGTTTAGAAACAGCTT+AGG - chr1_2:29858188-29858207 Msa0066380:five_prime_UTR 35.0%
ATGAAATGAGAGAACATCAC+CGG - chr1_2:29858538-29858557 Msa0066380:five_prime_UTR 35.0%
GAACAATATTCAGAAAGGGA+TGG + chr1_2:29858599-29858618 None:intergenic 35.0%
CGATATGCACATGTATGTAT+TGG - chr1_2:29858846-29858865 Msa0066380:five_prime_UTR 35.0%
TGGATAGAACACTAAGAACT+AGG - chr1_2:29858866-29858885 Msa0066380:five_prime_UTR 35.0%
ACTTGATATGAATGACAGGT+AGG + chr1_2:29858933-29858952 None:intergenic 35.0%
!! ATGTCTTATTGTTGCTTTGG+AGG - chr1_2:29858976-29858995 Msa0066380:five_prime_UTR 35.0%
TCAATGCATATTGAAGGAGA+AGG + chr1_2:29859028-29859047 None:intergenic 35.0%
TGACTCTCAATGCATATTGA+AGG + chr1_2:29859034-29859053 None:intergenic 35.0%
CATTGAGAGTCAGTTATTTG+TGG - chr1_2:29859042-29859061 Msa0066380:five_prime_UTR 35.0%
!! TCTCACTTAATTTGGTGTCA+AGG - chr1_2:29859265-29859284 Msa0066380:five_prime_UTR 35.0%
TTATTCCATTGTGTCTAAGC+GGG + chr1_2:29859345-29859364 None:intergenic 35.0%
!! TGTTTAGTTTAGTTTGGAGG+TGG - chr1_2:29859399-29859418 Msa0066380:five_prime_UTR 35.0%
GTATTTGCATTCAGACACAA+TGG - chr1_2:29859517-29859536 Msa0066380:five_prime_UTR 35.0%
GAAGGTGGTTTAATCTAGTT+TGG - chr1_2:29859581-29859600 Msa0066380:five_prime_UTR 35.0%
TTTACACTAGAAGAGTTAGC+TGG - chr1_2:29859673-29859692 Msa0066380:five_prime_UTR 35.0%
GTCCTTGAAGATAGATTGAT+CGG - chr1_2:29853782-29853801 Msa0066380:three_prime_UTR 35.0%
ATTGTTGTCATGTGACTGAA+AGG - chr1_2:29854120-29854139 Msa0066380:three_prime_UTR 35.0%
TGTACAATACACCAAATGGT+GGG - chr1_2:29854185-29854204 Msa0066380:three_prime_UTR 35.0%
!! TACGTGGCATTTGATTTTGT+GGG - chr1_2:29854286-29854305 Msa0066380:CDS 35.0%
ATTGATATGAGTGTGTACCA+AGG - chr1_2:29854323-29854342 Msa0066380:CDS 35.0%
!!! TACCAAGGCCTTTTGTTTTA+AGG - chr1_2:29854338-29854357 Msa0066380:CDS 35.0%
AATGAAGCACAAATACTCCT+CGG - chr1_2:29854366-29854385 Msa0066380:CDS 35.0%
ATAATCATATGTGTGGGTGT+CGG + chr1_2:29854427-29854446 None:intergenic 35.0%
CGAACCAGTAATCCTATTAA+AGG + chr1_2:29854547-29854566 None:intergenic 35.0%
! AAGAAGTTTTGCGAAAACCA+TGG + chr1_2:29854680-29854699 None:intergenic 35.0%
TTTCCAGCTATGATTCAATC+CGG - chr1_2:29854698-29854717 Msa0066380:intron 35.0%
TGTGACTCTGTAATTTATGG+AGG - chr1_2:29854960-29854979 Msa0066380:CDS 35.0%
GTGACTCTGTAATTTATGGA+GGG - chr1_2:29854961-29854980 Msa0066380:CDS 35.0%
AAAAAATTGCTTCCTGCAGT+TGG + chr1_2:29855038-29855057 None:intergenic 35.0%
! TAGCATGGACTGTAAGAATT+TGG - chr1_2:29855142-29855161 Msa0066380:intron 35.0%
TGTCCGACAAAGAAACAAAA+AGG + chr1_2:29855210-29855229 None:intergenic 35.0%
TGGAAGTTGGAAGGAAAAAA+CGG + chr1_2:29855293-29855312 None:intergenic 35.0%
CAACAAAGACAAAAAACGGT+TGG + chr1_2:29855313-29855332 None:intergenic 35.0%
!!! CAACCGTTTTTTGTCTTTGT+TGG - chr1_2:29855311-29855330 Msa0066380:intron 35.0%
! AAACAAGAAGGTTTTCAGCA+GGG + chr1_2:29855344-29855363 None:intergenic 35.0%
! TAAACAAGAAGGTTTTCAGC+AGG + chr1_2:29855345-29855364 None:intergenic 35.0%
! TGTCATTAGTTTACTCCCAA+GGG - chr1_2:29855425-29855444 Msa0066380:intron 35.0%
TCATGGTGAAGACTATATTG+GGG - chr1_2:29855454-29855473 Msa0066380:intron 35.0%
CAATGCTGAACAACACTTTA+TGG - chr1_2:29855525-29855544 Msa0066380:intron 35.0%
! TCTTTTGGTAGACATGTTTC+CGG - chr1_2:29855652-29855671 Msa0066380:intron 35.0%
!! GTTTTGTTGTGTTCATCTCT+TGG - chr1_2:29855744-29855763 Msa0066380:intron 35.0%
!! GATTCCAGATTTGATTTTGG+AGG + chr1_2:29856075-29856094 None:intergenic 35.0%
CTTGTTCATATGCTTCTTTC+TGG - chr1_2:29856174-29856193 Msa0066380:CDS 35.0%
!! CAGGTGTTTTTATCAACTTG+GGG - chr1_2:29856566-29856585 Msa0066380:intron 35.0%
! GGAAAAGGTGCAAAAATTTG+TGG + chr1_2:29856611-29856630 None:intergenic 35.0%
!!! CACCTTTTCCTGTTATTTCA+TGG - chr1_2:29856621-29856640 Msa0066380:intron 35.0%
GTCCATGAAATAACAGGAAA+AGG + chr1_2:29856626-29856645 None:intergenic 35.0%
!! TTCCTGTTATTTCATGGACA+AGG - chr1_2:29856627-29856646 Msa0066380:intron 35.0%
TACCTTGTCCATGAAATAAC+AGG + chr1_2:29856632-29856651 None:intergenic 35.0%
GAATATAATACATCCCCACT+AGG - chr1_2:29856924-29856943 Msa0066380:intron 35.0%
CTGTTAAGCTTATTACTGTC+TGG - chr1_2:29857037-29857056 Msa0066380:intron 35.0%
TTAAGCTTATTACTGTCTGG+AGG - chr1_2:29857040-29857059 Msa0066380:intron 35.0%
CAGCCAAATTGTATTAACTG+TGG - chr1_2:29857289-29857308 Msa0066380:intron 35.0%
CAAAAAGGAATCTCATTCCT+AGG + chr1_2:29857379-29857398 None:intergenic 35.0%
AAATTCCACAGCCATTACAA+TGG + chr1_2:29857542-29857561 None:intergenic 35.0%
GCAGGTATGAAATGATAATC+TGG - chr1_2:29857562-29857581 Msa0066380:five_prime_UTR 35.0%
!! CTCAACTTTACCCTGTTTTT+AGG - chr1_2:29857766-29857785 Msa0066380:five_prime_UTR 35.0%
!!! TATTTTTTGCACAGAACTGG+TGG - chr1_2:29857931-29857950 Msa0066380:intron 35.0%
TTCTTCCATTGTAACAAGTG+TGG - chr1_2:29857964-29857983 Msa0066380:intron 35.0%
AAATGTTACCTCGAAACACA+CGG + chr1_2:29858161-29858180 None:intergenic 35.0%
TCATGGTTTAGAAACAGCTT+AGG - chr1_2:29858188-29858207 Msa0066380:five_prime_UTR 35.0%
ATGAAATGAGAGAACATCAC+CGG - chr1_2:29858538-29858557 Msa0066380:five_prime_UTR 35.0%
GAACAATATTCAGAAAGGGA+TGG + chr1_2:29858599-29858618 None:intergenic 35.0%
CGATATGCACATGTATGTAT+TGG - chr1_2:29858846-29858865 Msa0066380:five_prime_UTR 35.0%
TGGATAGAACACTAAGAACT+AGG - chr1_2:29858866-29858885 Msa0066380:five_prime_UTR 35.0%
ACTTGATATGAATGACAGGT+AGG + chr1_2:29858933-29858952 None:intergenic 35.0%
!! ATGTCTTATTGTTGCTTTGG+AGG - chr1_2:29858976-29858995 Msa0066380:five_prime_UTR 35.0%
TCAATGCATATTGAAGGAGA+AGG + chr1_2:29859028-29859047 None:intergenic 35.0%
TGACTCTCAATGCATATTGA+AGG + chr1_2:29859034-29859053 None:intergenic 35.0%
CATTGAGAGTCAGTTATTTG+TGG - chr1_2:29859042-29859061 Msa0066380:five_prime_UTR 35.0%
!! TCTCACTTAATTTGGTGTCA+AGG - chr1_2:29859265-29859284 Msa0066380:five_prime_UTR 35.0%
TTATTCCATTGTGTCTAAGC+GGG + chr1_2:29859345-29859364 None:intergenic 35.0%
!! TGTTTAGTTTAGTTTGGAGG+TGG - chr1_2:29859399-29859418 Msa0066380:five_prime_UTR 35.0%
GTATTTGCATTCAGACACAA+TGG - chr1_2:29859517-29859536 Msa0066380:five_prime_UTR 35.0%
GAAGGTGGTTTAATCTAGTT+TGG - chr1_2:29859581-29859600 Msa0066380:five_prime_UTR 35.0%
TTTACACTAGAAGAGTTAGC+TGG - chr1_2:29859673-29859692 Msa0066380:five_prime_UTR 35.0%
CTCCGATCAATCTATCTTCA+AGG + chr1_2:29853787-29853806 None:intergenic 40.0%
CTTGAAGATAGATTGATCGG+AGG - chr1_2:29853785-29853804 Msa0066380:three_prime_UTR 40.0%
ACGGCGATTGAATTGATGTT+GGG + chr1_2:29853815-29853834 None:intergenic 40.0%
AACGGCGATTGAATTGATGT+TGG + chr1_2:29853816-29853835 None:intergenic 40.0%
GCTGTGTACAATACACCAAA+TGG - chr1_2:29854181-29854200 Msa0066380:three_prime_UTR 40.0%
GTGTACAATACACCAAATGG+TGG - chr1_2:29854184-29854203 Msa0066380:three_prime_UTR 40.0%
!! GTACGTGGCATTTGATTTTG+TGG - chr1_2:29854285-29854304 Msa0066380:CDS 40.0%
TGCCTTAAAACAAAAGGCCT+TGG + chr1_2:29854343-29854362 None:intergenic 40.0%
TGTCTGAGTACATGCTTCAT+AGG - chr1_2:29854483-29854502 Msa0066380:intron 40.0%
!! AATAGGATTACTGGTTCGAC+TGG - chr1_2:29854549-29854568 Msa0066380:intron 40.0%
TTCAATCCGGTTCCTGATTA+TGG - chr1_2:29854711-29854730 Msa0066380:intron 40.0%
CACAAACCATAATCAGGAAC+CGG + chr1_2:29854720-29854739 None:intergenic 40.0%
!! TTTTAGGAGACTCAAGTCGA+GGG - chr1_2:29854834-29854853 Msa0066380:CDS 40.0%
CAACGTAAGCATATGCAACT+GGG + chr1_2:29854934-29854953 None:intergenic 40.0%
ACTCTGTAATTTATGGAGGG+AGG - chr1_2:29854964-29854983 Msa0066380:CDS 40.0%
GCAACTGCAGAAATACAGAT+GGG + chr1_2:29855079-29855098 None:intergenic 40.0%
TGCAACTGCAGAAATACAGA+TGG + chr1_2:29855080-29855099 None:intergenic 40.0%
AGCTCCAACAACATCAAAGT+TGG + chr1_2:29855170-29855189 None:intergenic 40.0%
ATGTTGTTGGAGCTTCGTAT+GGG - chr1_2:29855176-29855195 Msa0066380:intron 40.0%
AAAAACGGTTGGAAGTTGGA+AGG + chr1_2:29855302-29855321 None:intergenic 40.0%
GACAAAAAACGGTTGGAAGT+TGG + chr1_2:29855306-29855325 None:intergenic 40.0%
CTATGTTCACTGCCAAATTG+AGG + chr1_2:29855369-29855388 None:intergenic 40.0%
AGTGAACATAGTTCACCTTC+AGG - chr1_2:29855378-29855397 Msa0066380:intron 40.0%
CTAATAACTACGTCACCTGA+AGG + chr1_2:29855396-29855415 None:intergenic 40.0%
! GTGTCATTAGTTTACTCCCA+AGG - chr1_2:29855424-29855443 Msa0066380:intron 40.0%
TCACCATGATAGATTCCCTT+GGG + chr1_2:29855443-29855462 None:intergenic 40.0%
TTCACCATGATAGATTCCCT+TGG + chr1_2:29855444-29855463 None:intergenic 40.0%
TGGTAAGTTTCGGTTTCTGA+AGG - chr1_2:29855499-29855518 Msa0066380:intron 40.0%
GGTAAGTTTCGGTTTCTGAA+GGG - chr1_2:29855500-29855519 Msa0066380:intron 40.0%
! GTAAGTTTCGGTTTCTGAAG+GGG - chr1_2:29855501-29855520 Msa0066380:intron 40.0%
GCTGAACAACACTTTATGGT+AGG - chr1_2:29855529-29855548 Msa0066380:CDS 40.0%
! CTTTTGGTAGACATGTTTCC+GGG - chr1_2:29855653-29855672 Msa0066380:intron 40.0%
GTGTTCATCTCTTGGAGTAA+TGG - chr1_2:29855752-29855771 Msa0066380:intron 40.0%
TCTCTTGGAGTAATGGTGAT+TGG - chr1_2:29855759-29855778 Msa0066380:intron 40.0%
!! CAATGCATTTGGTGTTTACC+TGG - chr1_2:29855846-29855865 Msa0066380:intron 40.0%
TGGAGGATTAACGTCTTCTT+GGG + chr1_2:29856058-29856077 None:intergenic 40.0%
TTGGAGGATTAACGTCTTCT+TGG + chr1_2:29856059-29856078 None:intergenic 40.0%
! CTTTTGCCTCATTGTGACAA+TGG + chr1_2:29856320-29856339 None:intergenic 40.0%
ACTTTGTGCAACTGAACAAG+AGG - chr1_2:29856704-29856723 Msa0066380:intron 40.0%
ATAATACATCCCCACTAGGT+TGG - chr1_2:29856928-29856947 Msa0066380:intron 40.0%
GCAAGGAATTAGAGTCTACA+AGG + chr1_2:29856958-29856977 None:intergenic 40.0%
!! GTATATAATCAGGGAGCACT+AGG + chr1_2:29856980-29856999 None:intergenic 40.0%
! ATTCCAGATGTTTTGCGCTA+TGG - chr1_2:29857065-29857084 Msa0066380:intron 40.0%
AAACAGTTTCAGCCAGCATA+TGG + chr1_2:29857134-29857153 None:intergenic 40.0%
TACACTAGTTATAGACTCGC+TGG + chr1_2:29857475-29857494 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG - chr1_2:29857528-29857547 Msa0066380:five_prime_UTR 40.0%
ACAGGGTAAAGTTGAGTACT+AGG + chr1_2:29857762-29857781 None:intergenic 40.0%
ATCAGTTAAGGCAAGGCAAA+AGG + chr1_2:29857902-29857921 None:intergenic 40.0%
! GCTTACCACACTTGTTACAA+TGG + chr1_2:29857972-29857991 None:intergenic 40.0%
AATGTTACCTCGAAACACAC+GGG + chr1_2:29858160-29858179 None:intergenic 40.0%
! TTATGGATTGTATGTCCGCA+CGG + chr1_2:29858507-29858526 None:intergenic 40.0%
GATGGAGAAGTAAAGAGACT+AGG + chr1_2:29858581-29858600 None:intergenic 40.0%
AGAACGACTTCGAACATAGA+GGG + chr1_2:29858658-29858677 None:intergenic 40.0%
AGTCGTTCTGTGATATGTCA+AGG - chr1_2:29858669-29858688 Msa0066380:five_prime_UTR 40.0%
GTCGTTCTGTGATATGTCAA+GGG - chr1_2:29858670-29858689 Msa0066380:five_prime_UTR 40.0%
TCTGTGATATGTCAAGGGTT+TGG - chr1_2:29858675-29858694 Msa0066380:five_prime_UTR 40.0%
CTGTGATATGTCAAGGGTTT+GGG - chr1_2:29858676-29858695 Msa0066380:five_prime_UTR 40.0%
! TTTTGGTATTGCTCAGGCAT+TGG + chr1_2:29858731-29858750 None:intergenic 40.0%
AAAATGGAACCGAACATGAC+CGG + chr1_2:29859153-29859172 None:intergenic 40.0%
! TCATGTTCGGTTCCATTTTG+TGG - chr1_2:29859154-29859173 Msa0066380:five_prime_UTR 40.0%
!!! GGCATTTTAGAGCCACAAAA+TGG + chr1_2:29859169-29859188 None:intergenic 40.0%
TGTTATAGGAGTTGCAGTTG+AGG + chr1_2:29859190-29859209 None:intergenic 40.0%
TATTCCATTGTGTCTAAGCG+GGG + chr1_2:29859344-29859363 None:intergenic 40.0%
TATCATTTATCTCGCACCGA+AGG - chr1_2:29859563-29859582 Msa0066380:five_prime_UTR 40.0%
! GGTGGTTTAATCTAGTTTGG+AGG - chr1_2:29859584-29859603 Msa0066380:five_prime_UTR 40.0%
GAGTTTGCATTGTAACCTCA+AGG - chr1_2:29859699-29859718 Msa0066380:five_prime_UTR 40.0%
CTCCGATCAATCTATCTTCA+AGG + chr1_2:29853787-29853806 None:intergenic 40.0%
CTTGAAGATAGATTGATCGG+AGG - chr1_2:29853785-29853804 Msa0066380:three_prime_UTR 40.0%
ACGGCGATTGAATTGATGTT+GGG + chr1_2:29853815-29853834 None:intergenic 40.0%
AACGGCGATTGAATTGATGT+TGG + chr1_2:29853816-29853835 None:intergenic 40.0%
GCTGTGTACAATACACCAAA+TGG - chr1_2:29854181-29854200 Msa0066380:three_prime_UTR 40.0%
GTGTACAATACACCAAATGG+TGG - chr1_2:29854184-29854203 Msa0066380:three_prime_UTR 40.0%
!! GTACGTGGCATTTGATTTTG+TGG - chr1_2:29854285-29854304 Msa0066380:CDS 40.0%
TGCCTTAAAACAAAAGGCCT+TGG + chr1_2:29854343-29854362 None:intergenic 40.0%
TGTCTGAGTACATGCTTCAT+AGG - chr1_2:29854483-29854502 Msa0066380:intron 40.0%
!! AATAGGATTACTGGTTCGAC+TGG - chr1_2:29854549-29854568 Msa0066380:intron 40.0%
TTCAATCCGGTTCCTGATTA+TGG - chr1_2:29854711-29854730 Msa0066380:intron 40.0%
CACAAACCATAATCAGGAAC+CGG + chr1_2:29854720-29854739 None:intergenic 40.0%
!! TTTTAGGAGACTCAAGTCGA+GGG - chr1_2:29854834-29854853 Msa0066380:CDS 40.0%
CAACGTAAGCATATGCAACT+GGG + chr1_2:29854934-29854953 None:intergenic 40.0%
ACTCTGTAATTTATGGAGGG+AGG - chr1_2:29854964-29854983 Msa0066380:CDS 40.0%
GCAACTGCAGAAATACAGAT+GGG + chr1_2:29855079-29855098 None:intergenic 40.0%
TGCAACTGCAGAAATACAGA+TGG + chr1_2:29855080-29855099 None:intergenic 40.0%
AGCTCCAACAACATCAAAGT+TGG + chr1_2:29855170-29855189 None:intergenic 40.0%
ATGTTGTTGGAGCTTCGTAT+GGG - chr1_2:29855176-29855195 Msa0066380:intron 40.0%
AAAAACGGTTGGAAGTTGGA+AGG + chr1_2:29855302-29855321 None:intergenic 40.0%
GACAAAAAACGGTTGGAAGT+TGG + chr1_2:29855306-29855325 None:intergenic 40.0%
CTATGTTCACTGCCAAATTG+AGG + chr1_2:29855369-29855388 None:intergenic 40.0%
AGTGAACATAGTTCACCTTC+AGG - chr1_2:29855378-29855397 Msa0066380:intron 40.0%
CTAATAACTACGTCACCTGA+AGG + chr1_2:29855396-29855415 None:intergenic 40.0%
! GTGTCATTAGTTTACTCCCA+AGG - chr1_2:29855424-29855443 Msa0066380:intron 40.0%
TCACCATGATAGATTCCCTT+GGG + chr1_2:29855443-29855462 None:intergenic 40.0%
TTCACCATGATAGATTCCCT+TGG + chr1_2:29855444-29855463 None:intergenic 40.0%
TGGTAAGTTTCGGTTTCTGA+AGG - chr1_2:29855499-29855518 Msa0066380:intron 40.0%
GGTAAGTTTCGGTTTCTGAA+GGG - chr1_2:29855500-29855519 Msa0066380:intron 40.0%
! GTAAGTTTCGGTTTCTGAAG+GGG - chr1_2:29855501-29855520 Msa0066380:intron 40.0%
GCTGAACAACACTTTATGGT+AGG - chr1_2:29855529-29855548 Msa0066380:CDS 40.0%
! CTTTTGGTAGACATGTTTCC+GGG - chr1_2:29855653-29855672 Msa0066380:intron 40.0%
GTGTTCATCTCTTGGAGTAA+TGG - chr1_2:29855752-29855771 Msa0066380:intron 40.0%
TCTCTTGGAGTAATGGTGAT+TGG - chr1_2:29855759-29855778 Msa0066380:intron 40.0%
!! CAATGCATTTGGTGTTTACC+TGG - chr1_2:29855846-29855865 Msa0066380:intron 40.0%
TGGAGGATTAACGTCTTCTT+GGG + chr1_2:29856058-29856077 None:intergenic 40.0%
TTGGAGGATTAACGTCTTCT+TGG + chr1_2:29856059-29856078 None:intergenic 40.0%
! CTTTTGCCTCATTGTGACAA+TGG + chr1_2:29856320-29856339 None:intergenic 40.0%
ACTTTGTGCAACTGAACAAG+AGG - chr1_2:29856704-29856723 Msa0066380:intron 40.0%
ATAATACATCCCCACTAGGT+TGG - chr1_2:29856928-29856947 Msa0066380:intron 40.0%
GCAAGGAATTAGAGTCTACA+AGG + chr1_2:29856958-29856977 None:intergenic 40.0%
!! GTATATAATCAGGGAGCACT+AGG + chr1_2:29856980-29856999 None:intergenic 40.0%
! ATTCCAGATGTTTTGCGCTA+TGG - chr1_2:29857065-29857084 Msa0066380:intron 40.0%
AAACAGTTTCAGCCAGCATA+TGG + chr1_2:29857134-29857153 None:intergenic 40.0%
TACACTAGTTATAGACTCGC+TGG + chr1_2:29857475-29857494 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG - chr1_2:29857528-29857547 Msa0066380:five_prime_UTR 40.0%
ACAGGGTAAAGTTGAGTACT+AGG + chr1_2:29857762-29857781 None:intergenic 40.0%
ATCAGTTAAGGCAAGGCAAA+AGG + chr1_2:29857902-29857921 None:intergenic 40.0%
! GCTTACCACACTTGTTACAA+TGG + chr1_2:29857972-29857991 None:intergenic 40.0%
AATGTTACCTCGAAACACAC+GGG + chr1_2:29858160-29858179 None:intergenic 40.0%
! TTATGGATTGTATGTCCGCA+CGG + chr1_2:29858507-29858526 None:intergenic 40.0%
GATGGAGAAGTAAAGAGACT+AGG + chr1_2:29858581-29858600 None:intergenic 40.0%
AGAACGACTTCGAACATAGA+GGG + chr1_2:29858658-29858677 None:intergenic 40.0%
AGTCGTTCTGTGATATGTCA+AGG - chr1_2:29858669-29858688 Msa0066380:five_prime_UTR 40.0%
GTCGTTCTGTGATATGTCAA+GGG - chr1_2:29858670-29858689 Msa0066380:five_prime_UTR 40.0%
TCTGTGATATGTCAAGGGTT+TGG - chr1_2:29858675-29858694 Msa0066380:five_prime_UTR 40.0%
CTGTGATATGTCAAGGGTTT+GGG - chr1_2:29858676-29858695 Msa0066380:five_prime_UTR 40.0%
! TTTTGGTATTGCTCAGGCAT+TGG + chr1_2:29858731-29858750 None:intergenic 40.0%
AAAATGGAACCGAACATGAC+CGG + chr1_2:29859153-29859172 None:intergenic 40.0%
! TCATGTTCGGTTCCATTTTG+TGG - chr1_2:29859154-29859173 Msa0066380:five_prime_UTR 40.0%
!!! GGCATTTTAGAGCCACAAAA+TGG + chr1_2:29859169-29859188 None:intergenic 40.0%
TGTTATAGGAGTTGCAGTTG+AGG + chr1_2:29859190-29859209 None:intergenic 40.0%
TATTCCATTGTGTCTAAGCG+GGG + chr1_2:29859344-29859363 None:intergenic 40.0%
TATCATTTATCTCGCACCGA+AGG - chr1_2:29859563-29859582 Msa0066380:five_prime_UTR 40.0%
! GGTGGTTTAATCTAGTTTGG+AGG - chr1_2:29859584-29859603 Msa0066380:five_prime_UTR 40.0%
GAGTTTGCATTGTAACCTCA+AGG - chr1_2:29859699-29859718 Msa0066380:five_prime_UTR 40.0%
! TTGTTTGTTCGTTTGGCTCG+AGG - chr1_2:29854073-29854092 Msa0066380:three_prime_UTR 45.0%
! TGTTTGTTCGTTTGGCTCGA+GGG - chr1_2:29854074-29854093 Msa0066380:three_prime_UTR 45.0%
! CAATTTTACCAGTTGCGCCA+AGG + chr1_2:29854104-29854123 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+AGG - chr1_2:29854127-29854146 Msa0066380:three_prime_UTR 45.0%
! GTTGCCCTTGTTTGTTCGTT+TGG - chr1_2:29854252-29854271 Msa0066380:three_prime_UTR 45.0%
CGAGCCAAACGAACAAACAA+GGG + chr1_2:29854073-29854092 None:intergenic 45.0%
ACGAGCCAAACGAACAAACA+AGG + chr1_2:29854260-29854279 None:intergenic 45.0%
! TTGTTCGTTTGGCTCGTGTT+TGG - chr1_2:29854263-29854282 Msa0066380:exon 45.0%
GCACAAATACTCCTCGGATT+AGG - chr1_2:29854372-29854391 Msa0066380:CDS 45.0%
CATGATAGGTATCTGACACC+AGG + chr1_2:29854403-29854422 None:intergenic 45.0%
GAACCGGATTGAATCATAGC+TGG + chr1_2:29854704-29854723 None:intergenic 45.0%
!! CTTTTAGGAGACTCAAGTCG+AGG - chr1_2:29854833-29854852 Msa0066380:CDS 45.0%
TAGGTAGAGAAGTCTTTCGC+AGG - chr1_2:29854890-29854909 Msa0066380:intron 45.0%
AGGTAGAGAAGTCTTTCGCA+GGG - chr1_2:29854891-29854910 Msa0066380:intron 45.0%
GCAACGTAAGCATATGCAAC+TGG + chr1_2:29854935-29854954 None:intergenic 45.0%
! ATGGGCAAGGCATTAAAAGG+AGG + chr1_2:29855061-29855080 None:intergenic 45.0%
! CAGATGGGCAAGGCATTAAA+AGG + chr1_2:29855064-29855083 None:intergenic 45.0%
TGCAGAAATACAGATGGGCA+AGG + chr1_2:29855074-29855093 None:intergenic 45.0%
GGAGCCAACTTTGATGTTGT+TGG - chr1_2:29855163-29855182 Msa0066380:intron 45.0%
GATGTTGTTGGAGCTTCGTA+TGG - chr1_2:29855175-29855194 Msa0066380:intron 45.0%
TTGTCGGACAGCAAGAAGAA+TGG - chr1_2:29855220-29855239 Msa0066380:intron 45.0%
ACTCCCAAGGGAATCTATCA+TGG - chr1_2:29855437-29855456 Msa0066380:intron 45.0%
TATGGTAGGTTCACCCTTTG+TGG - chr1_2:29855543-29855562 Msa0066380:CDS 45.0%
TTGATTCCTCGAAGAACTCC+CGG + chr1_2:29855674-29855693 None:intergenic 45.0%
! TTGGTGTTTACCTGGCTTGA+TGG - chr1_2:29855854-29855873 Msa0066380:intron 45.0%
! TGGTGTTTACCTGGCTTGAT+GGG - chr1_2:29855855-29855874 Msa0066380:intron 45.0%
AGCTTGTATCATGGGTGATG+TGG - chr1_2:29855993-29856012 Msa0066380:intron 45.0%
! TCAAATCTGGAATCCTTGCC+TGG - chr1_2:29856081-29856100 Msa0066380:intron 45.0%
GATTCACTTGATGCTTCTCC+AGG + chr1_2:29856102-29856121 None:intergenic 45.0%
TTTGCAGATGCCAACACTAC+CGG - chr1_2:29856244-29856263 Msa0066380:intron 45.0%
TTGTCGCCATTGTCACAATG+AGG - chr1_2:29856311-29856330 Msa0066380:intron 45.0%
!! ACACCTGTTTGACTTGGTGT+CGG + chr1_2:29856553-29856572 None:intergenic 45.0%
CTACCATAGCGCAAAACATC+TGG + chr1_2:29857071-29857090 None:intergenic 45.0%
!! CAGCATATGGTCTTGTGCTA+TGG + chr1_2:29857121-29857140 None:intergenic 45.0%
CATAGCACAAGACCATATGC+TGG - chr1_2:29857119-29857138 Msa0066380:intron 45.0%
CAGTACCATTGTAATGGCTG+TGG - chr1_2:29857534-29857553 Msa0066380:five_prime_UTR 45.0%
GTAATGGCTGTGGAATTTGC+AGG - chr1_2:29857544-29857563 Msa0066380:five_prime_UTR 45.0%
! ATTTTATGGGATCGGAGGGA+GGG + chr1_2:29857710-29857729 None:intergenic 45.0%
! TATTTTATGGGATCGGAGGG+AGG + chr1_2:29857711-29857730 None:intergenic 45.0%
! TTGTTGCTTCTCAACTCTGC+TGG - chr1_2:29858090-29858109 Msa0066380:five_prime_UTR 45.0%
ATGTTACCTCGAAACACACG+GGG + chr1_2:29858159-29858178 None:intergenic 45.0%
! GAGATTGTTGTTATGCCGTG+CGG - chr1_2:29858489-29858508 Msa0066380:five_prime_UTR 45.0%
! ACATAGAGGGCATGTATACC+TGG + chr1_2:29858645-29858664 None:intergenic 45.0%
CAGAACGACTTCGAACATAG+AGG + chr1_2:29858659-29858678 None:intergenic 45.0%
CTGATTGTGTTACCCGTAAC+AGG - chr1_2:29859097-29859116 Msa0066380:five_prime_UTR 45.0%
TGTGTTACCCGTAACAGGTT+TGG - chr1_2:29859102-29859121 Msa0066380:five_prime_UTR 45.0%
ACAGGATCCAAACCTGTTAC+GGG + chr1_2:29859112-29859131 None:intergenic 45.0%
CACAGGATCCAAACCTGTTA+CGG + chr1_2:29859113-29859132 None:intergenic 45.0%
TCTCGTCTGTCGTGTGTTAT+AGG + chr1_2:29859204-29859223 None:intergenic 45.0%
TATAACACACGACAGACGAG+AGG - chr1_2:29859203-29859222 Msa0066380:five_prime_UTR 45.0%
! TTGTTTGTTCGTTTGGCTCG+AGG - chr1_2:29854073-29854092 Msa0066380:three_prime_UTR 45.0%
! TGTTTGTTCGTTTGGCTCGA+GGG - chr1_2:29854074-29854093 Msa0066380:three_prime_UTR 45.0%
! CAATTTTACCAGTTGCGCCA+AGG + chr1_2:29854104-29854123 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+AGG - chr1_2:29854127-29854146 Msa0066380:three_prime_UTR 45.0%
! GTTGCCCTTGTTTGTTCGTT+TGG - chr1_2:29854252-29854271 Msa0066380:three_prime_UTR 45.0%
CGAGCCAAACGAACAAACAA+GGG + chr1_2:29854073-29854092 None:intergenic 45.0%
ACGAGCCAAACGAACAAACA+AGG + chr1_2:29854260-29854279 None:intergenic 45.0%
! TTGTTCGTTTGGCTCGTGTT+TGG - chr1_2:29854263-29854282 Msa0066380:exon 45.0%
GCACAAATACTCCTCGGATT+AGG - chr1_2:29854372-29854391 Msa0066380:CDS 45.0%
CATGATAGGTATCTGACACC+AGG + chr1_2:29854403-29854422 None:intergenic 45.0%
GAACCGGATTGAATCATAGC+TGG + chr1_2:29854704-29854723 None:intergenic 45.0%
!! CTTTTAGGAGACTCAAGTCG+AGG - chr1_2:29854833-29854852 Msa0066380:CDS 45.0%
TAGGTAGAGAAGTCTTTCGC+AGG - chr1_2:29854890-29854909 Msa0066380:intron 45.0%
AGGTAGAGAAGTCTTTCGCA+GGG - chr1_2:29854891-29854910 Msa0066380:intron 45.0%
GCAACGTAAGCATATGCAAC+TGG + chr1_2:29854935-29854954 None:intergenic 45.0%
! ATGGGCAAGGCATTAAAAGG+AGG + chr1_2:29855061-29855080 None:intergenic 45.0%
! CAGATGGGCAAGGCATTAAA+AGG + chr1_2:29855064-29855083 None:intergenic 45.0%
TGCAGAAATACAGATGGGCA+AGG + chr1_2:29855074-29855093 None:intergenic 45.0%
GGAGCCAACTTTGATGTTGT+TGG - chr1_2:29855163-29855182 Msa0066380:intron 45.0%
GATGTTGTTGGAGCTTCGTA+TGG - chr1_2:29855175-29855194 Msa0066380:intron 45.0%
TTGTCGGACAGCAAGAAGAA+TGG - chr1_2:29855220-29855239 Msa0066380:intron 45.0%
ACTCCCAAGGGAATCTATCA+TGG - chr1_2:29855437-29855456 Msa0066380:intron 45.0%
TATGGTAGGTTCACCCTTTG+TGG - chr1_2:29855543-29855562 Msa0066380:CDS 45.0%
TTGATTCCTCGAAGAACTCC+CGG + chr1_2:29855674-29855693 None:intergenic 45.0%
! TTGGTGTTTACCTGGCTTGA+TGG - chr1_2:29855854-29855873 Msa0066380:intron 45.0%
! TGGTGTTTACCTGGCTTGAT+GGG - chr1_2:29855855-29855874 Msa0066380:intron 45.0%
AGCTTGTATCATGGGTGATG+TGG - chr1_2:29855993-29856012 Msa0066380:intron 45.0%
! TCAAATCTGGAATCCTTGCC+TGG - chr1_2:29856081-29856100 Msa0066380:intron 45.0%
GATTCACTTGATGCTTCTCC+AGG + chr1_2:29856102-29856121 None:intergenic 45.0%
TTTGCAGATGCCAACACTAC+CGG - chr1_2:29856244-29856263 Msa0066380:intron 45.0%
TTGTCGCCATTGTCACAATG+AGG - chr1_2:29856311-29856330 Msa0066380:intron 45.0%
!! ACACCTGTTTGACTTGGTGT+CGG + chr1_2:29856553-29856572 None:intergenic 45.0%
CTACCATAGCGCAAAACATC+TGG + chr1_2:29857071-29857090 None:intergenic 45.0%
!! CAGCATATGGTCTTGTGCTA+TGG + chr1_2:29857121-29857140 None:intergenic 45.0%
CATAGCACAAGACCATATGC+TGG - chr1_2:29857119-29857138 Msa0066380:intron 45.0%
CAGTACCATTGTAATGGCTG+TGG - chr1_2:29857534-29857553 Msa0066380:five_prime_UTR 45.0%
GTAATGGCTGTGGAATTTGC+AGG - chr1_2:29857544-29857563 Msa0066380:five_prime_UTR 45.0%
! ATTTTATGGGATCGGAGGGA+GGG + chr1_2:29857710-29857729 None:intergenic 45.0%
! TATTTTATGGGATCGGAGGG+AGG + chr1_2:29857711-29857730 None:intergenic 45.0%
! TTGTTGCTTCTCAACTCTGC+TGG - chr1_2:29858090-29858109 Msa0066380:five_prime_UTR 45.0%
ATGTTACCTCGAAACACACG+GGG + chr1_2:29858159-29858178 None:intergenic 45.0%
! GAGATTGTTGTTATGCCGTG+CGG - chr1_2:29858489-29858508 Msa0066380:five_prime_UTR 45.0%
! ACATAGAGGGCATGTATACC+TGG + chr1_2:29858645-29858664 None:intergenic 45.0%
CAGAACGACTTCGAACATAG+AGG + chr1_2:29858659-29858678 None:intergenic 45.0%
CTGATTGTGTTACCCGTAAC+AGG - chr1_2:29859097-29859116 Msa0066380:five_prime_UTR 45.0%
TGTGTTACCCGTAACAGGTT+TGG - chr1_2:29859102-29859121 Msa0066380:five_prime_UTR 45.0%
ACAGGATCCAAACCTGTTAC+GGG + chr1_2:29859112-29859131 None:intergenic 45.0%
CACAGGATCCAAACCTGTTA+CGG + chr1_2:29859113-29859132 None:intergenic 45.0%
TCTCGTCTGTCGTGTGTTAT+AGG + chr1_2:29859204-29859223 None:intergenic 45.0%
TATAACACACGACAGACGAG+AGG - chr1_2:29859203-29859222 Msa0066380:five_prime_UTR 45.0%
!!! TATATACTATTTTTTTTTTT+TGG - chr1_2:29856873-29856892 Msa0066380:intron 5.0%
!!! TATATACTATTTTTTTTTTT+TGG - chr1_2:29856873-29856892 Msa0066380:intron 5.0%
! GTTTGTTCGTTTGGCTCGAG+GGG - chr1_2:29854075-29854094 Msa0066380:three_prime_UTR 50.0%
ACGAACAAACAAGGGCAACC+CGG + chr1_2:29854251-29854270 None:intergenic 50.0%
! TTTGGCTCGTGTTTGGTACG+TGG - chr1_2:29854270-29854289 Msa0066380:exon 50.0%
TTCATGTCTCGCAGTCACCA+TGG - chr1_2:29854660-29854679 Msa0066380:intron 50.0%
GCAACTGGGTAGTTCCACTT+CGG + chr1_2:29854920-29854939 None:intergenic 50.0%
TTGCTTCCTGCAGTTGGAGA+TGG + chr1_2:29855032-29855051 None:intergenic 50.0%
TTGTTGGAGCTTCGTATGGG+TGG - chr1_2:29855179-29855198 Msa0066380:intron 50.0%
ATGTTTCCGGGAGTTCTTCG+AGG - chr1_2:29855665-29855684 Msa0066380:intron 50.0%
! TGCTGGTTACAGTTGCTCTG+CGG - chr1_2:29855805-29855824 Msa0066380:intron 50.0%
! GGTGTTTACCTGGCTTGATG+GGG - chr1_2:29855856-29855875 Msa0066380:intron 50.0%
TTTAGTCACCCCATCAAGCC+AGG + chr1_2:29855867-29855886 None:intergenic 50.0%
GAAGCAGGGCAGTAAGCTTA+AGG + chr1_2:29855943-29855962 None:intergenic 50.0%
ACTTGATGCTTCTCCAGGCA+AGG + chr1_2:29856097-29856116 None:intergenic 50.0%
TGCAACAAGGAGCCCTGATT+CGG + chr1_2:29856278-29856297 None:intergenic 50.0%
!! ACCTGTTTGACTTGGTGTCG+GGG + chr1_2:29856551-29856570 None:intergenic 50.0%
!! CACCTGTTTGACTTGGTGTC+GGG + chr1_2:29856552-29856571 None:intergenic 50.0%
ACAAGGTGTGCCAACCTAGT+GGG + chr1_2:29856941-29856960 None:intergenic 50.0%
TACAAGGTGTGCCAACCTAG+TGG + chr1_2:29856942-29856961 None:intergenic 50.0%
!! TAATCAGGGAGCACTAGGCA+AGG + chr1_2:29856975-29856994 None:intergenic 50.0%
GGAAAACAGTCACACCTGTG+TGG - chr1_2:29858111-29858130 Msa0066380:five_prime_UTR 50.0%
AACAGTCACACCTGTGTGGA+AGG - chr1_2:29858115-29858134 Msa0066380:five_prime_UTR 50.0%
ATGCATTGCTCCTTCCACAC+AGG + chr1_2:29858128-29858147 None:intergenic 50.0%
GTCAAGGGTTTGGGAGAGAT+TGG - chr1_2:29858685-29858704 Msa0066380:five_prime_UTR 50.0%
TGGATCCTGTGCAATGACTG+CGG - chr1_2:29859122-29859141 Msa0066380:five_prime_UTR 50.0%
TGTTTCCGCAGTCATTGCAC+AGG + chr1_2:29859130-29859149 None:intergenic 50.0%
TGCAATGACTGCGGAAACAC+CGG - chr1_2:29859131-29859150 Msa0066380:five_prime_UTR 50.0%
TCAACCCCGCTTAGACACAA+TGG - chr1_2:29859337-29859356 Msa0066380:five_prime_UTR 50.0%
CATTTATCTCGCACCGAAGG+TGG - chr1_2:29859566-29859585 Msa0066380:five_prime_UTR 50.0%
! GTTTGTTCGTTTGGCTCGAG+GGG - chr1_2:29854075-29854094 Msa0066380:three_prime_UTR 50.0%
ACGAACAAACAAGGGCAACC+CGG + chr1_2:29854251-29854270 None:intergenic 50.0%
! TTTGGCTCGTGTTTGGTACG+TGG - chr1_2:29854270-29854289 Msa0066380:exon 50.0%
TTCATGTCTCGCAGTCACCA+TGG - chr1_2:29854660-29854679 Msa0066380:intron 50.0%
GCAACTGGGTAGTTCCACTT+CGG + chr1_2:29854920-29854939 None:intergenic 50.0%
TTGCTTCCTGCAGTTGGAGA+TGG + chr1_2:29855032-29855051 None:intergenic 50.0%
TTGTTGGAGCTTCGTATGGG+TGG - chr1_2:29855179-29855198 Msa0066380:intron 50.0%
ATGTTTCCGGGAGTTCTTCG+AGG - chr1_2:29855665-29855684 Msa0066380:intron 50.0%
! TGCTGGTTACAGTTGCTCTG+CGG - chr1_2:29855805-29855824 Msa0066380:intron 50.0%
! GGTGTTTACCTGGCTTGATG+GGG - chr1_2:29855856-29855875 Msa0066380:intron 50.0%
TTTAGTCACCCCATCAAGCC+AGG + chr1_2:29855867-29855886 None:intergenic 50.0%
GAAGCAGGGCAGTAAGCTTA+AGG + chr1_2:29855943-29855962 None:intergenic 50.0%
ACTTGATGCTTCTCCAGGCA+AGG + chr1_2:29856097-29856116 None:intergenic 50.0%
TGCAACAAGGAGCCCTGATT+CGG + chr1_2:29856278-29856297 None:intergenic 50.0%
!! ACCTGTTTGACTTGGTGTCG+GGG + chr1_2:29856551-29856570 None:intergenic 50.0%
!! CACCTGTTTGACTTGGTGTC+GGG + chr1_2:29856552-29856571 None:intergenic 50.0%
ACAAGGTGTGCCAACCTAGT+GGG + chr1_2:29856941-29856960 None:intergenic 50.0%
TACAAGGTGTGCCAACCTAG+TGG + chr1_2:29856942-29856961 None:intergenic 50.0%
!! TAATCAGGGAGCACTAGGCA+AGG + chr1_2:29856975-29856994 None:intergenic 50.0%
GGAAAACAGTCACACCTGTG+TGG - chr1_2:29858111-29858130 Msa0066380:five_prime_UTR 50.0%
AACAGTCACACCTGTGTGGA+AGG - chr1_2:29858115-29858134 Msa0066380:five_prime_UTR 50.0%
ATGCATTGCTCCTTCCACAC+AGG + chr1_2:29858128-29858147 None:intergenic 50.0%
GTCAAGGGTTTGGGAGAGAT+TGG - chr1_2:29858685-29858704 Msa0066380:five_prime_UTR 50.0%
TGGATCCTGTGCAATGACTG+CGG - chr1_2:29859122-29859141 Msa0066380:five_prime_UTR 50.0%
TGTTTCCGCAGTCATTGCAC+AGG + chr1_2:29859130-29859149 None:intergenic 50.0%
TGCAATGACTGCGGAAACAC+CGG - chr1_2:29859131-29859150 Msa0066380:five_prime_UTR 50.0%
TCAACCCCGCTTAGACACAA+TGG - chr1_2:29859337-29859356 Msa0066380:five_prime_UTR 50.0%
CATTTATCTCGCACCGAAGG+TGG - chr1_2:29859566-29859585 Msa0066380:five_prime_UTR 50.0%
! TTTGGCTCGAGGGGTAACCT+TGG - chr1_2:29854084-29854103 Msa0066380:three_prime_UTR 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr1_2:29854224-29854243 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr1_2:29854225-29854244 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr1_2:29854382-29854401 Msa0066380:intron 55.0%
ACCAGGACACACCTAATCCG+AGG + chr1_2:29854386-29854405 None:intergenic 55.0%
!! GTGTGGGTGTCGGACATGAT+AGG + chr1_2:29854417-29854436 None:intergenic 55.0%
TTGGAGCCATCTCCAACTGC+AGG - chr1_2:29855023-29855042 Msa0066380:CDS 55.0%
GGCATCTTCTCCGGTAGTGT+TGG + chr1_2:29856257-29856276 None:intergenic 55.0%
ACCGGAGAAGATGCCGAATC+AGG - chr1_2:29856262-29856281 Msa0066380:intron 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG + chr1_2:29856266-29856285 None:intergenic 55.0%
CCGGAGAAGATGCCGAATCA+GGG - chr1_2:29856263-29856282 Msa0066380:intron 55.0%
CAAGGTGTGCCAACCTAGTG+GGG + chr1_2:29856940-29856959 None:intergenic 55.0%
TGATTGCCCCGTGTGTTTCG+AGG - chr1_2:29858150-29858169 Msa0066380:five_prime_UTR 55.0%
! GGAGCTTTGTGAGCACTCAC+CGG + chr1_2:29858560-29858579 None:intergenic 55.0%
GCGGAAACACCGGTCATGTT+CGG - chr1_2:29859141-29859160 Msa0066380:five_prime_UTR 55.0%
CAGACGAGAGGATGAGCTAG+TGG - chr1_2:29859215-29859234 Msa0066380:five_prime_UTR 55.0%
! TTTGGCTCGAGGGGTAACCT+TGG - chr1_2:29854084-29854103 Msa0066380:three_prime_UTR 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr1_2:29854224-29854243 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr1_2:29854225-29854244 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr1_2:29854382-29854401 Msa0066380:intron 55.0%
ACCAGGACACACCTAATCCG+AGG + chr1_2:29854386-29854405 None:intergenic 55.0%
!! GTGTGGGTGTCGGACATGAT+AGG + chr1_2:29854417-29854436 None:intergenic 55.0%
TTGGAGCCATCTCCAACTGC+AGG - chr1_2:29855023-29855042 Msa0066380:CDS 55.0%
GGCATCTTCTCCGGTAGTGT+TGG + chr1_2:29856257-29856276 None:intergenic 55.0%
ACCGGAGAAGATGCCGAATC+AGG - chr1_2:29856262-29856281 Msa0066380:intron 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG + chr1_2:29856266-29856285 None:intergenic 55.0%
CCGGAGAAGATGCCGAATCA+GGG - chr1_2:29856263-29856282 Msa0066380:intron 55.0%
CAAGGTGTGCCAACCTAGTG+GGG + chr1_2:29856940-29856959 None:intergenic 55.0%
TGATTGCCCCGTGTGTTTCG+AGG - chr1_2:29858150-29858169 Msa0066380:five_prime_UTR 55.0%
! GGAGCTTTGTGAGCACTCAC+CGG + chr1_2:29858560-29858579 None:intergenic 55.0%
GCGGAAACACCGGTCATGTT+CGG - chr1_2:29859141-29859160 Msa0066380:five_prime_UTR 55.0%
CAGACGAGAGGATGAGCTAG+TGG - chr1_2:29859215-29859234 Msa0066380:five_prime_UTR 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_2:29854093-29854112 Msa0066380:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_2:29854197-29854216 Msa0066380:three_prime_UTR 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr1_2:29854212-29854231 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr1_2:29854213-29854232 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr1_2:29854212-29854231 Msa0066380:three_prime_UTR 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr1_2:29854213-29854232 Msa0066380:three_prime_UTR 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr1_2:29854229-29854248 Msa0066380:three_prime_UTR 60.0%
! CTTTCGCAGGGCATCCGAAG+TGG - chr1_2:29854903-29854922 Msa0066380:intron 60.0%
GCCCCGACACCAAGTCAAAC+AGG - chr1_2:29856547-29856566 Msa0066380:intron 60.0%
TTATGGGATCGGAGGGAGGG+TGG + chr1_2:29857707-29857726 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_2:29854093-29854112 Msa0066380:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr1_2:29854197-29854216 Msa0066380:three_prime_UTR 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr1_2:29854212-29854231 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr1_2:29854213-29854232 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr1_2:29854212-29854231 Msa0066380:three_prime_UTR 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr1_2:29854213-29854232 Msa0066380:three_prime_UTR 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr1_2:29854229-29854248 Msa0066380:three_prime_UTR 60.0%
! CTTTCGCAGGGCATCCGAAG+TGG - chr1_2:29854903-29854922 Msa0066380:intron 60.0%
GCCCCGACACCAAGTCAAAC+AGG - chr1_2:29856547-29856566 Msa0066380:intron 60.0%
TTATGGGATCGGAGGGAGGG+TGG + chr1_2:29857707-29857726 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_2:29854199-29854218 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr1_2:29854214-29854233 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr1_2:29854218-29854237 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr1_2:29854219-29854238 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr1_2:29854230-29854249 Msa0066380:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_2:29854199-29854218 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr1_2:29854214-29854233 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr1_2:29854218-29854237 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr1_2:29854219-29854238 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr1_2:29854230-29854249 Msa0066380:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 29853776 29859735 29853776 ID=Msa0066380;Name=Msa0066380
chr1_2 mRNA 29853776 29859735 29853776 ID=Msa0066380-mRNA-1;Parent=Msa0066380;Name=Msa0066380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2131|0.72|0.91|0.91|0.63|0.66|12|506|283
chr1_2 exon 29853776 29854392 29853776 ID=Msa0066380-mRNA-1:exon:10029;Parent=Msa0066380-mRNA-1
chr1_2 exon 29854754 29854865 29854754 ID=Msa0066380-mRNA-1:exon:10028;Parent=Msa0066380-mRNA-1
chr1_2 exon 29854952 29855043 29854952 ID=Msa0066380-mRNA-1:exon:10027;Parent=Msa0066380-mRNA-1
chr1_2 exon 29855526 29855566 29855526 ID=Msa0066380-mRNA-1:exon:10026;Parent=Msa0066380-mRNA-1
chr1_2 exon 29855946 29855989 29855946 ID=Msa0066380-mRNA-1:exon:10025;Parent=Msa0066380-mRNA-1
chr1_2 exon 29856148 29856225 29856148 ID=Msa0066380-mRNA-1:exon:10024;Parent=Msa0066380-mRNA-1
chr1_2 exon 29856411 29856439 29856411 ID=Msa0066380-mRNA-1:exon:10023;Parent=Msa0066380-mRNA-1
chr1_2 exon 29856786 29856818 29856786 ID=Msa0066380-mRNA-1:exon:10022;Parent=Msa0066380-mRNA-1
chr1_2 exon 29856943 29857002 29856943 ID=Msa0066380-mRNA-1:exon:10021;Parent=Msa0066380-mRNA-1
chr1_2 exon 29857173 29857260 29857173 ID=Msa0066380-mRNA-1:exon:10020;Parent=Msa0066380-mRNA-1
chr1_2 exon 29857345 29857868 29857345 ID=Msa0066380-mRNA-1:exon:10019;Parent=Msa0066380-mRNA-1
chr1_2 exon 29857965 29859735 29857965 ID=Msa0066380-mRNA-1:exon:10018;Parent=Msa0066380-mRNA-1
chr1_2 five_prime_UTR 29857965 29859735 29857965 ID=Msa0066380-mRNA-1:five_prime_utr;Parent=Msa0066380-mRNA-1
chr1_2 five_prime_UTR 29857509 29857868 29857509 ID=Msa0066380-mRNA-1:five_prime_utr;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29857345 29857508 29857345 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29857173 29857260 29857173 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29856943 29857002 29856943 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29856786 29856818 29856786 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29856411 29856439 29856411 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29856148 29856225 29856148 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29855946 29855989 29855946 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29855526 29855566 29855526 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29854952 29855043 29854952 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29854754 29854865 29854754 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 CDS 29854282 29854392 29854282 ID=Msa0066380-mRNA-1:cds;Parent=Msa0066380-mRNA-1
chr1_2 three_prime_UTR 29853776 29854281 29853776 ID=Msa0066380-mRNA-1:three_prime_utr;Parent=Msa0066380-mRNA-1
Gene Sequence

>Msa0066380

ATGGGTGATGTGGCAGCGTTGCACTCTGAATGCAATGACACGAAACATACGACCCAAGAAGACGTTAATCCTCCAAAATCAAATCTGGAATCCTTGCCTGGAGAAGCATCAAGTGAATCTATAAACACAAATGATTTGCAAGATAAAGGATACATGGAATATGGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCTCCTTGTTGCAATGAGATTTTTGATTGTCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTAGATTATAAACATAGACACGAAATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGCAACTGAACAAGAGATGTTTTGCGCTATGGTAGTTTCACGAATGTTCAGCCAAATTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTTTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGACTTTCTTCCATTGTAACAAGTGTGTATTTATTTGAATCAACAAAAGAGATTGTTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTATAGATGAAATGAGAGAACATCACCGGTATACATGCCCTCTATGTTCGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACACCAATGCCTGAGCAATACCAAAATAAAATGGTTTGGATCCTGTGCAATGACTGCGGAAACACCGGTCATGTTCGGTTCCATTTTGTGGCTCTAAAATGCCTCAACTGCAACTCCTATAACACACGACAGACGAGAGGATGA
Protein sequence

>Msa0066380

MGDVAALHSECNDTKHTTQEDVNPPKSNLESLPGEASSESINTNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHEMPRHQVKQVICSLCATEQEMFCAMVVSRMFSQIVLTVVFVWASTSVRHASFLTMIYLSSSTIVMAVEFAELVDMRLSSIVTSVYLFESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIAATPMPEQYQNKMVWILCNDCGNTGHVRFHFVALKCLNCNSYNTRQTRG*