AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0111690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111690 MtrunA17_Chr1g0169881 71.761 301 67 3 1 283 1 301 9.69e-155 433
Msa0111690 MtrunA17_Chr1g0148421 60.518 309 89 5 1 283 1 302 1.10e-127 365
Msa0111690 MtrunA17_Chr3g0138621 54.019 311 113 6 1 283 1 309 4.69e-110 320
Msa0111690 MtrunA17_Chr7g0264931 49.804 255 104 3 50 283 18 269 8.83e-86 258
Msa0111690 MtrunA17_Chr4g0028121 45.455 275 119 6 29 282 40 304 7.67e-76 234
Msa0111690 MtrunA17_Chr2g0286331 42.688 253 120 4 48 279 10 258 1.14e-61 196
Msa0111690 MtrunA17_Chr8g0391161 45.455 99 53 1 181 279 1135 1232 2.76e-22 96.7
Msa0111690 MtrunA17_Chr6g0484171 43.434 99 55 1 181 279 1125 1222 3.48e-19 87.4
Msa0111690 MtrunA17_Chr4g0059881 41.000 100 58 1 180 279 1171 1269 2.88e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111690 AT5G25560.1 47.099 293 124 5 14 283 24 308 7.08e-89 267
Msa0111690 AT5G25560.5 47.099 293 124 5 14 283 24 308 7.08e-89 267
Msa0111690 AT5G25560.6 47.099 293 124 5 14 283 24 308 7.08e-89 267
Msa0111690 AT5G25560.2 47.099 293 124 5 14 283 24 308 7.08e-89 267
Msa0111690 AT5G25560.3 45.545 303 124 6 14 283 24 318 8.81e-86 259
Msa0111690 AT5G25560.4 45.734 293 123 6 14 283 24 303 5.07e-83 252
Msa0111690 AT5G22920.1 46.332 259 115 3 45 282 16 271 5.36e-78 239
Msa0111690 AT5G18650.1 42.248 258 122 5 44 279 6 258 9.19e-62 196
Msa0111690 AT5G22920.2 43.111 225 104 3 45 248 16 237 2.01e-58 187
Msa0111690 AT3G62970.1 38.095 273 140 7 30 280 10 275 5.22e-54 177
Msa0111690 AT3G62970.2 36.709 237 122 6 30 244 10 240 6.87e-43 147
Msa0111690 AT3G62970.3 35.683 227 118 6 30 234 10 230 3.14e-38 135
Msa0111690 AT1G74770.1 45.000 100 54 1 180 279 1159 1257 3.07e-23 100
Msa0111690 AT1G18910.1 45.000 100 54 1 180 279 1154 1252 2.07e-22 97.4
Msa0111690 AT3G18290.1 45.000 100 54 1 180 279 1141 1239 2.49e-22 97.4

Find 217 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTATTGTAATTTA+TGG 0.062295 1_3:+25836236 Msa0111690:five_prime_UTR
TTCAATCCGGTTCCTGATTA+TGG 0.195784 1_3:+25835245 Msa0111690:five_prime_UTR
CCATTTCATCTCACTTAATT+TGG 0.208166 1_3:+25839810 Msa0111690:three_prime_UTR
CTAACCAGTAATCCTATTAA+AGG 0.228358 1_3:-25835078 None:intergenic
GATAAAGGATACATGGAATA+TGG 0.235762 1_3:+25836678 Msa0111690:CDS
CTTCTTGTTTAACCTCAATT+TGG 0.242671 1_3:+25835888 Msa0111690:five_prime_UTR
TCTTACCAGCTAACTCTTCT+AGG 0.245920 1_3:-25840228 None:intergenic
ACACCACAGTTAATACAATT+TGG 0.247115 1_3:-25837833 None:intergenic
TCTCGTCTGTCGTGTGTTAT+AGG 0.247468 1_3:-25839754 None:intergenic
GAGTATTCATAATTGTAATT+AGG 0.251708 1_3:+25835157 Msa0111690:five_prime_UTR
TAACCCTTTAATAGGATTAC+TGG 0.255875 1_3:+25835074 Msa0111690:five_prime_UTR
CAATGCTGAACAACACTTTA+TGG 0.263522 1_3:+25836059 Msa0111690:five_prime_UTR
AAGGATTCCAGATTTGATTT+TGG 0.266935 1_3:-25836609 None:intergenic
TTAGGTTGTAACCCTTTAAT+AGG 0.268244 1_3:+25835066 Msa0111690:five_prime_UTR
AAACGATTTGACAAGGAAAA+TGG 0.273845 1_3:-25834384 None:intergenic
TTACACAAAAGGTTGTTTCT+AGG 0.276921 1_3:-25834681 None:intergenic
ATGAATGATTATATCAGTTT+AGG 0.287811 1_3:+25835398 Msa0111690:five_prime_UTR
GTTGCCCTTGTTTGTTCGTT+TGG 0.303272 1_3:+25834786 Msa0111690:five_prime_UTR
TTGGTGTTTACCTGGCTTGA+TGG 0.304208 1_3:+25836388 Msa0111690:five_prime_UTR
TTGGAGGATTAACGTCTTCT+TGG 0.305325 1_3:-25836590 None:intergenic
GAAGGTGGTTTAATCTAGTT+TGG 0.311338 1_3:+25840134 Msa0111690:three_prime_UTR
TAGCATGGACTGTAAGAGTT+TGG 0.322595 1_3:+25835676 Msa0111690:five_prime_UTR
CTGTGATATGTCAAGGGTTT+GGG 0.325412 1_3:+25839226 Msa0111690:CDS
ATTATATATATACATGGATT+TGG 0.330496 1_3:+25836013 Msa0111690:five_prime_UTR
CCAAATTAAGTGAGATGAAA+TGG 0.333323 1_3:-25839810 None:intergenic
CGAGTTTGATATAATTCAAC+AGG 0.333735 1_3:-25835113 None:intergenic
CAGATGGGCAAGGCATTAAA+AGG 0.334692 1_3:-25835595 None:intergenic
AAATAGGTTGGAATTTCTTT+TGG 0.337526 1_3:+25836171 Msa0111690:intron
ACCGGAGAAGATGCCGAATC+AGG 0.341031 1_3:+25836796 Msa0111690:CDS
ACAAATGATTTGCAAGATAA+AGG 0.341490 1_3:+25836663 Msa0111690:CDS
TTTAATAATGTTCATTGCTT+AGG 0.342214 1_3:+25835048 Msa0111690:five_prime_UTR
TGAGCAATACCAAAATAAAA+TGG 0.342214 1_3:+25839286 Msa0111690:CDS
TATTAACTGTGGTGTTTGTA+TGG 0.349579 1_3:+25837841 Msa0111690:CDS
TACATGGATTTGGTAAGTTT+CGG 0.354268 1_3:+25836023 Msa0111690:five_prime_UTR
GAATGGATTTGATACTAGTT+TGG 0.355229 1_3:+25835771 Msa0111690:five_prime_UTR
CACCTGTTTGACTTGGTGTC+GGG 0.359703 1_3:-25837084 None:intergenic
CAAATGGTGGGACCCCTTCC+CGG 0.367038 1_3:+25834731 Msa0111690:five_prime_UTR
GTCAAGGGTTTGGGAGAGAT+TGG 0.368404 1_3:+25839235 Msa0111690:CDS
TAATCCTCCAAAATCAAATC+TGG 0.375712 1_3:+25836602 Msa0111690:CDS
TATCATGGTGAAGACTATAC+TGG 0.376021 1_3:+25835986 Msa0111690:five_prime_UTR
CGGGAAGGGGTCCCACCATT+TGG 0.381455 1_3:-25834730 None:intergenic
ATGGAAACTTTCAATCATAA+AGG 0.387266 1_3:-25839791 None:intergenic
AGGGGTAACCTTGGCGCAAC+TGG 0.387780 1_3:+25834617 Msa0111690:five_prime_UTR
TCTCTTGGAGTAATGGTGAT+TGG 0.389043 1_3:+25836293 Msa0111690:five_prime_UTR
GCACAAATACTCCTCGGATT+AGG 0.392788 1_3:+25834906 Msa0111690:five_prime_UTR
CAAATCTGAAAGAAAATTGC+TGG 0.393169 1_3:-25835537 None:intergenic
CAAGAAATCAACAATGCATT+TGG 0.394892 1_3:+25836369 Msa0111690:five_prime_UTR
GGAGCCAACTTTGATGTTGT+TGG 0.395578 1_3:+25835697 Msa0111690:five_prime_UTR
TGGAGGATTAACGTCTTCTT+GGG 0.398592 1_3:-25836589 None:intergenic
TTACATAGCTGAATAACCTT+AGG 0.398690 1_3:+25835312 Msa0111690:five_prime_UTR
TCTGTGATATGTCAAGGGTT+TGG 0.400427 1_3:+25839225 Msa0111690:CDS
TGGTGTTTACCTGGCTTGAT+GGG 0.400828 1_3:+25836389 Msa0111690:five_prime_UTR
TGTCTGAGTACATGCTTCAT+AGG 0.406448 1_3:+25835017 Msa0111690:five_prime_UTR
CAATGCATTTGGTGTTTACC+TGG 0.410773 1_3:+25836380 Msa0111690:five_prime_UTR
AAGATAAAAGAAGACTTAGA+TGG 0.411528 1_3:-25839985 None:intergenic
GCATATGCAGGGTCCGGGAA+GGG 0.413809 1_3:-25834744 None:intergenic
TGTCCGACAAAGAAACAAAA+AGG 0.414014 1_3:-25835741 None:intergenic
CATATGCAGGGTCCGGGAAG+GGG 0.415211 1_3:-25834743 None:intergenic
ATTCATTGCCTTAAAACAAA+AGG 0.421357 1_3:-25834880 None:intergenic
CTCCGATCAATCTATCTTCA+AGG 0.426689 1_3:-25834314 None:intergenic
CTAAATTTGTTCGTAAATGC+AGG 0.429992 1_3:+25836450 Msa0111690:five_prime_UTR
CAAATTGAGGTTAAACAAGA+AGG 0.433374 1_3:-25835887 None:intergenic
TCAAAACACAAACCATAATC+AGG 0.437774 1_3:-25835257 None:intergenic
TGTTTAGTTTAGTTTGGAGG+TGG 0.439412 1_3:+25839952 Msa0111690:three_prime_UTR
TCAAATCTGGAATCCTTGCC+TGG 0.447006 1_3:+25836615 Msa0111690:CDS
CCCTGATTCGGCATCTTCTC+CGG 0.448395 1_3:-25836797 None:intergenic
GAAGCAGGGCAGTAAGCTTA+AGG 0.448741 1_3:-25836474 None:intergenic
TATCAACTATATCTAGAAGC+AGG 0.449495 1_3:-25836489 None:intergenic
GATTCCCTTGATGCTTCTCC+AGG 0.449577 1_3:-25836633 None:intergenic
GTGTTCCTCTCTTGGAGTAA+TGG 0.454060 1_3:+25836286 Msa0111690:five_prime_UTR
ACTAGAGCTCCCGCATATGC+AGG 0.454860 1_3:-25834756 None:intergenic
CACAAACCATAATCAGGAAC+CGG 0.455020 1_3:-25835251 None:intergenic
GCCCCGACACCAAGTCAAAC+AGG 0.459750 1_3:+25837082 Msa0111690:CDS
TAACCAGTAATCCTATTAAA+GGG 0.459784 1_3:-25835077 None:intergenic
TTTGAAGATAGCTTGTATCA+TGG 0.460287 1_3:+25836518 Msa0111690:exon
GATGTTGTTGGAGCTTCGTA+TGG 0.462211 1_3:+25835709 Msa0111690:five_prime_UTR
GCTCCCGCATATGCAGGGTC+CGG 0.466464 1_3:-25834750 None:intergenic
TGCAACAAGGAGCCCTGATT+CGG 0.470133 1_3:-25836809 None:intergenic
CGCATATGCAGGGTCCGGGA+AGG 0.471383 1_3:-25834745 None:intergenic
TTCCCGGACCCTGCATATGC+GGG 0.471788 1_3:+25834747 Msa0111690:five_prime_UTR
CCTTGATGCTTCTCCAGGCA+AGG 0.472598 1_3:-25836628 None:intergenic
TGTTTGTTCGTTTGGCTCGA+GGG 0.472633 1_3:+25834598 Msa0111690:five_prime_UTR
TTGTCGGACAGCAAGAAGAA+TGG 0.474483 1_3:+25835754 Msa0111690:five_prime_UTR
ATAAAGGATACATGGAATAT+GGG 0.477054 1_3:+25836679 Msa0111690:CDS
GCGGAAACACCGGTCATGTT+CGG 0.481081 1_3:+25839694 Msa0111690:CDS
CTTCCCGGACCCTGCATATG+CGG 0.484509 1_3:+25834746 Msa0111690:five_prime_UTR
TTGCTTCCTGCAGTTGGAGA+TGG 0.485580 1_3:-25835563 None:intergenic
CTATGTTCACTGCCAAATTG+AGG 0.485809 1_3:-25835900 None:intergenic
TTATTCCATTGTGTCTAAGC+GGG 0.487443 1_3:-25839895 None:intergenic
TGGTAAGTTTCGGTTTCTGA+AGG 0.488664 1_3:+25836033 Msa0111690:five_prime_UTR
TGCCTTAAAACAAAAGGCCT+TGG 0.490396 1_3:-25834874 None:intergenic
TTGAAGATAGCTTGTATCAT+GGG 0.490686 1_3:+25836519 Msa0111690:exon
CTCCCGCATATGCAGGGTCC+GGG 0.491023 1_3:-25834749 None:intergenic
GTAATGGCTGTGGAATTTGC+AGG 0.495528 1_3:+25838085 Msa0111690:CDS
ACGGCGATTGAATTGATGTT+GGG 0.496011 1_3:-25834342 None:intergenic
TTGATTCCTCGAAGAACTCC+CGG 0.499465 1_3:-25836205 None:intergenic
AATAGGATTACTGGTTAGAC+TGG 0.500569 1_3:+25835083 Msa0111690:five_prime_UTR
ATGCGGGAGCTCTAGTGCAC+CGG 0.500837 1_3:+25834763 Msa0111690:five_prime_UTR
TTGTTTGTTCGTTTGGCTCG+AGG 0.500922 1_3:+25834597 Msa0111690:five_prime_UTR
CAGAACGACTTCGAACATAG+AGG 0.501864 1_3:-25839206 None:intergenic
TCACCATGATAGATTCCCTT+GGG 0.506033 1_3:-25835974 None:intergenic
GTGTGGGTGTCGGACATGAT+AGG 0.508854 1_3:-25834948 None:intergenic
AAACTAGATTAAACCACCTT+CGG 0.513131 1_3:-25840132 None:intergenic
TTTCCAGCTATGATTCAATC+CGG 0.513161 1_3:+25835232 Msa0111690:five_prime_UTR
TAGGTAGAAAAGTCTTTCGC+AGG 0.514557 1_3:+25835424 Msa0111690:five_prime_UTR
GTGTCATTAGTTTACTCCCA+AGG 0.515247 1_3:+25835958 Msa0111690:five_prime_UTR
AACGGCGATTGAATTGATGT+TGG 0.516699 1_3:-25834343 None:intergenic
AGTGAACATAGTTCACCTTC+AGG 0.517150 1_3:+25835912 Msa0111690:five_prime_UTR
TACATAGCTGAATAACCTTA+GGG 0.517493 1_3:+25835313 Msa0111690:five_prime_UTR
TTTGCAGATGCCAACACTAC+CGG 0.517868 1_3:+25836778 Msa0111690:intron
GAACCGGATTGAATCATAGC+TGG 0.520414 1_3:-25835235 None:intergenic
CAATCAATATTATTTCCCTA+AGG 0.521353 1_3:-25835328 None:intergenic
TTCACCATGATAGATTCCCT+TGG 0.521465 1_3:-25835975 None:intergenic
AGCTCCAACAACATCAAAGT+TGG 0.525332 1_3:-25835701 None:intergenic
GCTGTGTACAATACACCAAA+TGG 0.525412 1_3:+25834715 Msa0111690:five_prime_UTR
GGTAAGTTTCGGTTTCTGAA+GGG 0.526040 1_3:+25836034 Msa0111690:five_prime_UTR
TTTGGCTCGAGGGGTAACCT+TGG 0.526351 1_3:+25834608 Msa0111690:five_prime_UTR
TTGTTCGTTTGGCTCGTGTT+TGG 0.527752 1_3:+25834797 Msa0111690:five_prime_UTR
ACGAGCCAAACGAACAAACA+AGG 0.528651 1_3:-25834791 None:intergenic
GGCATCTTCTCCGGTAGTGT+TGG 0.528892 1_3:-25836788 None:intergenic
ACTCCCAAGGGAATCTATCA+TGG 0.529688 1_3:+25835971 Msa0111690:five_prime_UTR
CATTTGTCTCGCACCGAAGG+TGG 0.532882 1_3:+25840119 Msa0111690:three_prime_UTR
CCGGAGAAGATGCCGAATCA+GGG 0.533742 1_3:+25836797 Msa0111690:CDS
AAGCAGCAGTACCATTGTAA+TGG 0.540337 1_3:+25838069 Msa0111690:CDS
TCTCACTTAATTTGGTGTCA+AGG 0.540340 1_3:+25839818 Msa0111690:three_prime_UTR
AGAAAGTGAAGATGAACAAA+CGG 0.540710 1_3:-25834361 None:intergenic
TTTAGTCACCCCATCAAGCC+AGG 0.541385 1_3:-25836398 None:intergenic
CAGTACCATTGTAATGGCTG+TGG 0.543474 1_3:+25838075 Msa0111690:CDS
ATCATGGTGAAGACTATACT+GGG 0.544682 1_3:+25835987 Msa0111690:five_prime_UTR
TGCAATGACTGCGGAAACAC+CGG 0.544929 1_3:+25839684 Msa0111690:CDS
CCTTGCCTGGAGAAGCATCA+AGG 0.545939 1_3:+25836628 Msa0111690:CDS
ACCTGTTTGACTTGGTGTCG+GGG 0.548265 1_3:-25837083 None:intergenic
TTATTATTTAGATTATACGT+TGG 0.548793 1_3:+25834475 Msa0111690:five_prime_UTR
TTGGAGCCATCTCCAACTGC+AGG 0.549096 1_3:+25835557 Msa0111690:five_prime_UTR
GGTGGTTTAATCTAGTTTGG+AGG 0.549161 1_3:+25840137 Msa0111690:three_prime_UTR
GCAACGTAAGCATATGCACC+TGG 0.549222 1_3:-25835466 None:intergenic
GTAAGTTTCGGTTTCTGAAG+GGG 0.550680 1_3:+25836035 Msa0111690:five_prime_UTR
TGTCATTAGTTTACTCCCAA+GGG 0.551747 1_3:+25835959 Msa0111690:five_prime_UTR
ATTAACTGTGGTGTTTGTAT+GGG 0.551930 1_3:+25837842 Msa0111690:CDS
TTTACCCTAGAAGAGTTAGC+TGG 0.553040 1_3:+25840223 Msa0111690:three_prime_UTR
GAATATGCAAAATTCAATCA+AGG 0.553376 1_3:-25834508 None:intergenic
AAAATGGAACCGAACATGAC+CGG 0.555237 1_3:-25839703 None:intergenic
ATGTTTCCGGGAGTTCTTCG+AGG 0.555720 1_3:+25836199 Msa0111690:five_prime_UTR
ACACCTGTTTGACTTGGTGT+CGG 0.555973 1_3:-25837085 None:intergenic
CATCAATATAATCATATGTG+TGG 0.559013 1_3:-25834965 None:intergenic
GTTGTTGTCATGCGACTGAA+AGG 0.559120 1_3:+25834644 Msa0111690:five_prime_UTR
AGTCGTTCTGTGATATGTCA+AGG 0.560608 1_3:+25839219 Msa0111690:CDS
CTTACCAGCTAACTCTTCTA+GGG 0.562171 1_3:-25840227 None:intergenic
TATCATTTGTCTCGCACCGA+AGG 0.564689 1_3:+25840116 Msa0111690:three_prime_UTR
CTTGCCTGGAGAAGCATCAA+GGG 0.565331 1_3:+25836629 Msa0111690:CDS
GAGTTTGCATTGTAACCTCA+AGG 0.567257 1_3:+25840249 Msa0111690:three_prime_UTR
GTTTGTTCGTTTGGCTCGAG+GGG 0.574057 1_3:+25834599 Msa0111690:five_prime_UTR
GTCCTTGAAGATAGATTGAT+CGG 0.575880 1_3:+25834312 Msa0111690:five_prime_UTR
TGTTTCCGCAGTCATTGCAC+AGG 0.575987 1_3:-25839680 None:intergenic
TTTGCAAGATAAAGGATACA+TGG 0.576830 1_3:+25836671 Msa0111690:CDS
ACGAACAAACAAGGGCAACC+CGG 0.578353 1_3:-25834782 None:intergenic
ACTTTGTGCAACTGAACAAG+AGG 0.578809 1_3:+25837239 Msa0111690:CDS
TGTTATAGGAGTTGCAGTTG+AGG 0.581082 1_3:-25839740 None:intergenic
TTCTTCCATTGTAACAAGTG+TGG 0.583354 1_3:+25838514 Msa0111690:CDS
TTTGGCTCGTGTTTGGTACG+TGG 0.583460 1_3:+25834804 Msa0111690:five_prime_UTR
TTGTTGGAGCTTCGTATGGG+TGG 0.585451 1_3:+25835713 Msa0111690:five_prime_UTR
CAACTTTACCAGTTGCGCCA+AGG 0.585916 1_3:-25834625 None:intergenic
ATGTTGTTGGAGCTTCGTAT+GGG 0.587954 1_3:+25835710 Msa0111690:five_prime_UTR
ATCAATATAATCATATGTGT+GGG 0.589590 1_3:-25834964 None:intergenic
GTCGTTCTGTGATATGTCAA+GGG 0.590443 1_3:+25839220 Msa0111690:CDS
TGCAACTGCAGAAATACAGA+TGG 0.592512 1_3:-25835611 None:intergenic
TGCGGGAGCTCTAGTGCACC+GGG 0.594741 1_3:+25834764 Msa0111690:five_prime_UTR
CTTTCGCAGGGCATCCGAAG+TGG 0.599862 1_3:+25835437 Msa0111690:five_prime_UTR
AATGAAGCACAAATACTCCT+CGG 0.601797 1_3:+25834900 Msa0111690:five_prime_UTR
GCTTACCACACTTGTTACAA+TGG 0.603038 1_3:-25838519 None:intergenic
TCCTCGGATTAGGTGTGTCG+TGG 0.605303 1_3:+25834916 Msa0111690:five_prime_UTR
GTTGAATTATATCAAACTCG+AGG 0.606130 1_3:+25835116 Msa0111690:five_prime_UTR
CGAGCCAAACGAACAAACAA+GGG 0.611141 1_3:-25834790 None:intergenic
GTGTACAATACACCAAATGG+TGG 0.611731 1_3:+25834718 Msa0111690:five_prime_UTR
GGTGTTTACCTGGCTTGATG+GGG 0.611927 1_3:+25836390 Msa0111690:five_prime_UTR
ATCAACTATATCTAGAAGCA+GGG 0.612626 1_3:-25836488 None:intergenic
ATGAAATGAGAGAACATCAC+CGG 0.612682 1_3:+25839088 Msa0111690:CDS
TTATGGATTGTATGTCCGCA+CGG 0.613243 1_3:-25839054 None:intergenic
AGCTTGTATCATGGGTGATG+TGG 0.616132 1_3:+25836527 Msa0111690:exon
CATCCGAAGTGGAACTACCC+AGG 0.616589 1_3:+25835448 Msa0111690:five_prime_UTR
ATAATCATATGTGTGGGTGT+CGG 0.617073 1_3:-25834958 None:intergenic
CTAGAGCTCCCGCATATGCA+GGG 0.618468 1_3:-25834755 None:intergenic
TCATGCGACTGAAAGGTCGC+AGG 0.618928 1_3:+25834651 Msa0111690:five_prime_UTR
GTATTTGCATTCAGACACAA+TGG 0.619437 1_3:+25840070 Msa0111690:three_prime_UTR
GATTTGAGCTTAATACCTTG+AGG 0.620615 1_3:-25840264 None:intergenic
GGGGTGATTATATATATACA+TGG 0.623938 1_3:+25836007 Msa0111690:five_prime_UTR
TTGCCGCCATTGTCACAATG+AGG 0.627282 1_3:+25836845 Msa0111690:CDS
TATTCCATTGTGTCTAAGCG+GGG 0.629234 1_3:-25839894 None:intergenic
TTGCCTCATTGTGACAATGG+CGG 0.629473 1_3:-25836848 None:intergenic
AGGTAGAAAAGTCTTTCGCA+GGG 0.631256 1_3:+25835425 Msa0111690:five_prime_UTR
AGAACGACTTCGAACATAGA+GGG 0.631596 1_3:-25839205 None:intergenic
CTAATAACTACGTCACCTGA+AGG 0.633698 1_3:-25835927 None:intergenic
CAGCCAAATTGTATTAACTG+TGG 0.635426 1_3:+25837830 Msa0111690:CDS
ATAATCCTAAAACTTCTACA+AGG 0.636919 1_3:-25836425 None:intergenic
CAGACGAGAGGATGAGCTAG+TGG 0.638322 1_3:+25839768 Msa0111690:exon
TTCATGTCTCGCAGTCACCA+TGG 0.638325 1_3:+25835194 Msa0111690:five_prime_UTR
GCACCTGGGTAGTTCCACTT+CGG 0.638630 1_3:-25835451 None:intergenic
TTACAATTATGAATACTCAA+CGG 0.646084 1_3:-25835152 None:intergenic
AATCACCATTACTCCAAGAG+AGG 0.646508 1_3:-25836291 None:intergenic
GCAACTGCAGAAATACAGAT+GGG 0.651069 1_3:-25835610 None:intergenic
TCAACCCCGCTTAGACACAA+TGG 0.654486 1_3:+25839890 Msa0111690:three_prime_UTR
TGCAGAAATACAGATGGGCA+AGG 0.655762 1_3:-25835605 None:intergenic
CAACGTAAGCATATGCACCT+GGG 0.658692 1_3:-25835465 None:intergenic
ATTATTCCATTGTGTCTAAG+CGG 0.660087 1_3:-25839896 None:intergenic
GAAATTGTTGTTATGCCGTG+CGG 0.662393 1_3:+25839039 Msa0111690:CDS
ATGGGCAAGGCATTAAAAGG+AGG 0.664834 1_3:-25835592 None:intergenic
TGTACAATACACCAAATGGT+GGG 0.671227 1_3:+25834719 Msa0111690:five_prime_UTR
GAGTTTGATATAATTCAACA+GGG 0.682620 1_3:-25835112 None:intergenic
CTTGAAGATAGATTGATCGG+AGG 0.683919 1_3:+25834315 Msa0111690:five_prime_UTR
ACCACGACACACCTAATCCG+AGG 0.684236 1_3:-25834917 None:intergenic
TATAACACACGACAGACGAG+AGG 0.688676 1_3:+25839756 Msa0111690:CDS
ATTGATATGAGTGTGTACCA+AGG 0.697098 1_3:+25834857 Msa0111690:five_prime_UTR
AAATTCCACAGCCATTACAA+TGG 0.701862 1_3:-25838080 None:intergenic
AGTTTGATATAATTCAACAG+GGG 0.721442 1_3:-25835111 None:intergenic
TGGATCCTGTGCAATGACTG+CGG 0.725144 1_3:+25839675 Msa0111690:CDS
TGCTGGTTACAGTTGCTCTG+CGG 0.730508 1_3:+25836339 Msa0111690:five_prime_UTR
TCATGGTGAAGACTATACTG+GGG 0.741305 1_3:+25835988 Msa0111690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGACTAATTTTATAAA+AGG - chr1_3:25836759-25836778 None:intergenic 10.0%
!!! TTGTGATATTTTTAAATTTT+TGG + chr1_3:25836988-25837007 Msa0111690:intron 10.0%
!!! TGTGATATTTTTAAATTTTT+GGG + chr1_3:25836989-25837008 Msa0111690:intron 10.0%
!! AAATTATTCTATTAGAATTA+AGG - chr1_3:25837192-25837211 None:intergenic 10.0%
!! AAAAAATAGTATATAATCAT+AGG - chr1_3:25837403-25837422 None:intergenic 10.0%
!! TTATTATTTAGATTATACGT+TGG + chr1_3:25834475-25834494 Msa0111690:five_prime_UTR 15.0%
!! ATTATATATATACATGGATT+TGG + chr1_3:25836013-25836032 Msa0111690:five_prime_UTR 15.0%
!!! GTGATATTTTTAAATTTTTG+GGG + chr1_3:25836990-25837009 Msa0111690:intron 15.0%
!! TACTGATATTGAATTTATAA+AGG + chr1_3:25837308-25837327 Msa0111690:intron 15.0%
!!! GCAAATGATAAATATTTTAT+GGG - chr1_3:25838273-25838292 None:intergenic 15.0%
!!! TGCAAATGATAAATATTTTA+TGG - chr1_3:25838274-25838293 None:intergenic 15.0%
!! ATTATATTCATAACTATTAC+AGG - chr1_3:25838810-25838829 None:intergenic 15.0%
!! ATAGTTATGAATATAATTCA+CGG + chr1_3:25838813-25838832 Msa0111690:intron 15.0%
!!! ACTGATACAATTATTTTTTA+TGG - chr1_3:25838866-25838885 None:intergenic 15.0%
!! AATATAAAAACGATTTGACA+AGG - chr1_3:25834394-25834413 None:intergenic 20.0%
!! ATCAATATAATCATATGTGT+GGG - chr1_3:25834967-25834986 None:intergenic 20.0%
!! TTTAATAATGTTCATTGCTT+AGG + chr1_3:25835048-25835067 Msa0111690:five_prime_UTR 20.0%
!! TTACAATTATGAATACTCAA+CGG - chr1_3:25835155-25835174 None:intergenic 20.0%
!! GAGTATTCATAATTGTAATT+AGG + chr1_3:25835157-25835176 Msa0111690:five_prime_UTR 20.0%
!! ATGAATGATTATATCAGTTT+AGG + chr1_3:25835398-25835417 Msa0111690:five_prime_UTR 20.0%
!!! ATTATATCAGTTTAGGTTTT+AGG + chr1_3:25835405-25835424 Msa0111690:five_prime_UTR 20.0%
!! TGATTTATTGCTTTCAAAAT+AGG + chr1_3:25836155-25836174 Msa0111690:intron 20.0%
!! TCAATGCTTATTGTAATTTA+TGG + chr1_3:25836236-25836255 Msa0111690:five_prime_UTR 20.0%
!! AAATTACGCTTATGAAAAAT+AGG - chr1_3:25836892-25836911 None:intergenic 20.0%
!! ATTTGTGGATATTTCAATTA+AGG - chr1_3:25837131-25837150 None:intergenic 20.0%
!! TGATATTGAATTTATAAAGG+AGG + chr1_3:25837311-25837330 Msa0111690:intron 20.0%
!! CTTACATGTATATAATCATA+GGG - chr1_3:25837529-25837548 None:intergenic 20.0%
!! CATGCATAAAGAAAATAAAA+TGG + chr1_3:25837551-25837570 Msa0111690:intron 20.0%
!! TAACAAATTGCATCATTATT+AGG + chr1_3:25838144-25838163 Msa0111690:intron 20.0%
!! AACAAATTGCATCATTATTA+GGG + chr1_3:25838145-25838164 Msa0111690:intron 20.0%
!! AAAAACAAAATGAAACAAAG+GGG - chr1_3:25838196-25838215 None:intergenic 20.0%
!! GAAAAACAAAATGAAACAAA+GGG - chr1_3:25838197-25838216 None:intergenic 20.0%
!! TGAAAAACAAAATGAAACAA+AGG - chr1_3:25838198-25838217 None:intergenic 20.0%
!!! TGATAAATATTTTATGGGAT+CGG - chr1_3:25838268-25838287 None:intergenic 20.0%
!! ATATCAAAATCAATCAGTTA+AGG - chr1_3:25838464-25838483 None:intergenic 20.0%
!!! ATGCTAGAGTTATTTTAAAT+TGG + chr1_3:25838922-25838941 Msa0111690:intron 20.0%
!!! TAAGTCTGTTTTTATATTTC+TGG + chr1_3:25838959-25838978 Msa0111690:intron 20.0%
!! ATAAGAACAATATTCAGAAA+AGG - chr1_3:25839153-25839172 None:intergenic 20.0%
!! TTATTGACATCTTAAATTCA+AGG + chr1_3:25839624-25839643 Msa0111690:intron 20.0%
!! TATTGACATCTTAAATTCAA+GGG + chr1_3:25839625-25839644 Msa0111690:intron 20.0%
!!! TTCTTTTGTTTAGTTTAGTT+TGG + chr1_3:25839946-25839965 Msa0111690:three_prime_UTR 20.0%
!!! GTTTTTTTTCTTTCTATTGT+AGG + chr1_3:25840184-25840203 Msa0111690:three_prime_UTR 20.0%
! GAATATGCAAAATTCAATCA+AGG - chr1_3:25834511-25834530 None:intergenic 25.0%
! ATTCATTGCCTTAAAACAAA+AGG - chr1_3:25834883-25834902 None:intergenic 25.0%
! CATCAATATAATCATATGTG+TGG - chr1_3:25834968-25834987 None:intergenic 25.0%
! TAACCAGTAATCCTATTAAA+GGG - chr1_3:25835080-25835099 None:intergenic 25.0%
! AGTTTGATATAATTCAACAG+GGG - chr1_3:25835114-25835133 None:intergenic 25.0%
! GAGTTTGATATAATTCAACA+GGG - chr1_3:25835115-25835134 None:intergenic 25.0%
! CAATCAATATTATTTCCCTA+AGG - chr1_3:25835331-25835350 None:intergenic 25.0%
!! TTGATTTTATTGTCCACAAA+GGG - chr1_3:25836093-25836112 None:intergenic 25.0%
! TTATTGCTTTCAAAATAGGT+TGG + chr1_3:25836159-25836178 Msa0111690:intron 25.0%
!!! AAATAGGTTGGAATTTCTTT+TGG + chr1_3:25836171-25836190 Msa0111690:intron 25.0%
!! ATAATATCATTTTGTGTTGC+TGG + chr1_3:25836322-25836341 Msa0111690:five_prime_UTR 25.0%
!! ATATACCTTGTAGAAGTTTT+AGG + chr1_3:25836420-25836439 Msa0111690:five_prime_UTR 25.0%
! ATAATCCTAAAACTTCTACA+AGG - chr1_3:25836428-25836447 None:intergenic 25.0%
!! ACAAATGATTTGCAAGATAA+AGG + chr1_3:25836663-25836682 Msa0111690:CDS 25.0%
! ATAAAGGATACATGGAATAT+GGG + chr1_3:25836679-25836698 Msa0111690:CDS 25.0%
!! ACTAATTTTATAAAAGGAGC+AGG - chr1_3:25836753-25836772 None:intergenic 25.0%
! AAAAAAAGAAGTAATGAGAC+CGG - chr1_3:25836931-25836950 None:intergenic 25.0%
!! TAATTTTGTGCACTTTATTC+AGG + chr1_3:25837206-25837225 Msa0111690:intron 25.0%
! GCTTACATGTATATAATCAT+AGG - chr1_3:25837530-25837549 None:intergenic 25.0%
! TCATTGAGAAAAACAAAGAT+TGG - chr1_3:25837706-25837725 None:intergenic 25.0%
! TATGCAACATTAGAACAAAA+AGG - chr1_3:25837935-25837954 None:intergenic 25.0%
! AGATATCTGCATCATATAAA+AGG - chr1_3:25838049-25838068 None:intergenic 25.0%
!!! ATTTGTTATGTTTCAGACTT+AGG - chr1_3:25838132-25838151 None:intergenic 25.0%
! AAAACAAAATGAAACAAAGG+GGG - chr1_3:25838195-25838214 None:intergenic 25.0%
! CAAATAAATCCCTAAAAACA+GGG - chr1_3:25838329-25838348 None:intergenic 25.0%
!! GGTAACATTTACAATTTTCA+TGG + chr1_3:25838723-25838742 Msa0111690:intron 25.0%
!! TTTCATCTATACAGCTTTTA+TGG - chr1_3:25839074-25839093 None:intergenic 25.0%
! AGTATAAATAACCAACAGTA+AGG - chr1_3:25839328-25839347 None:intergenic 25.0%
!!! GGTATTTATTTTTGTTCTGT+TGG + chr1_3:25839440-25839459 Msa0111690:intron 25.0%
!!! TCTGTTGGTTCATTAATTTT+TGG + chr1_3:25839455-25839474 Msa0111690:intron 25.0%
! ATTGACATCTTAAATTCAAG+GGG + chr1_3:25839626-25839645 Msa0111690:intron 25.0%
! ATGGAAACTTTCAATCATAA+AGG - chr1_3:25839794-25839813 None:intergenic 25.0%
!!! TTTTGTTTAGTTTAGTTTGG+AGG + chr1_3:25839949-25839968 Msa0111690:three_prime_UTR 25.0%
! AAGATAAAAGAAGACTTAGA+TGG - chr1_3:25839988-25840007 None:intergenic 25.0%
! AAAATTGAAAAACTGAACAC+GGG - chr1_3:25840042-25840061 None:intergenic 25.0%
! GAAAATTGAAAAACTGAACA+CGG - chr1_3:25840043-25840062 None:intergenic 25.0%
AGAAAGTGAAGATGAACAAA+CGG - chr1_3:25834364-25834383 None:intergenic 30.0%
AAACGATTTGACAAGGAAAA+TGG - chr1_3:25834387-25834406 None:intergenic 30.0%
!! TTCGTTTTTGTTTGTTCGTT+TGG + chr1_3:25834590-25834609 Msa0111690:five_prime_UTR 30.0%
!! TTACACAAAAGGTTGTTTCT+AGG - chr1_3:25834684-25834703 None:intergenic 30.0%
! AACAACCTTTTGTGTAAAAC+AGG + chr1_3:25834687-25834706 Msa0111690:five_prime_UTR 30.0%
! ACAACCTTTTGTGTAAAACA+GGG + chr1_3:25834688-25834707 Msa0111690:five_prime_UTR 30.0%
! TTAGGTTGTAACCCTTTAAT+AGG + chr1_3:25835066-25835085 Msa0111690:five_prime_UTR 30.0%
TAACCCTTTAATAGGATTAC+TGG + chr1_3:25835074-25835093 Msa0111690:five_prime_UTR 30.0%
CTAACCAGTAATCCTATTAA+AGG - chr1_3:25835081-25835100 None:intergenic 30.0%
CGAGTTTGATATAATTCAAC+AGG - chr1_3:25835116-25835135 None:intergenic 30.0%
GTTGAATTATATCAAACTCG+AGG + chr1_3:25835116-25835135 Msa0111690:five_prime_UTR 30.0%
TCAAAACACAAACCATAATC+AGG - chr1_3:25835260-25835279 None:intergenic 30.0%
TTACATAGCTGAATAACCTT+AGG + chr1_3:25835312-25835331 Msa0111690:five_prime_UTR 30.0%
TACATAGCTGAATAACCTTA+GGG + chr1_3:25835313-25835332 Msa0111690:five_prime_UTR 30.0%
! TATTTGAGAGCGAAACTTTT+AGG + chr1_3:25835352-25835371 Msa0111690:five_prime_UTR 30.0%
! AGATGTGACTCTGTAATTTT+TGG + chr1_3:25835491-25835510 Msa0111690:five_prime_UTR 30.0%
CAAATCTGAAAGAAAATTGC+TGG - chr1_3:25835540-25835559 None:intergenic 30.0%
! CAGCAATTTTCTTTCAGATT+TGG + chr1_3:25835538-25835557 Msa0111690:five_prime_UTR 30.0%
!!! CTGTCTTATTTTTTCTAGCA+TGG + chr1_3:25835661-25835680 Msa0111690:five_prime_UTR 30.0%
!! TGTCCTTTTTGTTTCTTTGT+CGG + chr1_3:25835738-25835757 Msa0111690:five_prime_UTR 30.0%
! GAATGGATTTGATACTAGTT+TGG + chr1_3:25835771-25835790 Msa0111690:five_prime_UTR 30.0%
CTTCCAACAAAGACAAAAAA+CGG - chr1_3:25835851-25835870 None:intergenic 30.0%
CAAATTGAGGTTAAACAAGA+AGG - chr1_3:25835890-25835909 None:intergenic 30.0%
! CTTCTTGTTTAACCTCAATT+TGG + chr1_3:25835888-25835907 Msa0111690:five_prime_UTR 30.0%
GGGGTGATTATATATATACA+TGG + chr1_3:25836007-25836026 Msa0111690:five_prime_UTR 30.0%
! TACATGGATTTGGTAAGTTT+CGG + chr1_3:25836023-25836042 Msa0111690:five_prime_UTR 30.0%
!! GTTGATTTTATTGTCCACAA+AGG - chr1_3:25836094-25836113 None:intergenic 30.0%
CAAGAAATCAACAATGCATT+TGG + chr1_3:25836369-25836388 Msa0111690:five_prime_UTR 30.0%
! CTAAATTTGTTCGTAAATGC+AGG + chr1_3:25836450-25836469 Msa0111690:five_prime_UTR 30.0%
ATCAACTATATCTAGAAGCA+GGG - chr1_3:25836491-25836510 None:intergenic 30.0%
TATCAACTATATCTAGAAGC+AGG - chr1_3:25836492-25836511 None:intergenic 30.0%
! TTTGAAGATAGCTTGTATCA+TGG + chr1_3:25836518-25836537 Msa0111690:exon 30.0%
! TTGAAGATAGCTTGTATCAT+GGG + chr1_3:25836519-25836538 Msa0111690:exon 30.0%
TAATCCTCCAAAATCAAATC+TGG + chr1_3:25836602-25836621 Msa0111690:CDS 30.0%
!! AAGGATTCCAGATTTGATTT+TGG - chr1_3:25836612-25836631 None:intergenic 30.0%
TTTGCAAGATAAAGGATACA+TGG + chr1_3:25836671-25836690 Msa0111690:CDS 30.0%
GATAAAGGATACATGGAATA+TGG + chr1_3:25836678-25836697 Msa0111690:CDS 30.0%
TCAAAAATCTCATTGCAACA+AGG - chr1_3:25836825-25836844 None:intergenic 30.0%
ACGCTTATGAAAAATAGGTA+AGG - chr1_3:25836887-25836906 None:intergenic 30.0%
TTTGTTTCATATCATTCAGC+CGG + chr1_3:25836909-25836928 Msa0111690:intron 30.0%
ATAAAAACACCTGTTTGACT+TGG - chr1_3:25837094-25837113 None:intergenic 30.0%
!! AACAGGTGTTTTTATCAACT+TGG + chr1_3:25837099-25837118 Msa0111690:intron 30.0%
!! ACAGGTGTTTTTATCAACTT+GGG + chr1_3:25837100-25837119 Msa0111690:intron 30.0%
ATCCATGAAATAACAGGAAA+AGG - chr1_3:25837161-25837180 None:intergenic 30.0%
!! TTCCTGTTATTTCATGGATA+AGG + chr1_3:25837162-25837181 Msa0111690:intron 30.0%
TACCTTATCCATGAAATAAC+AGG - chr1_3:25837167-25837186 None:intergenic 30.0%
!! TGATGCTTTTTACTACTTTC+AGG + chr1_3:25837805-25837824 Msa0111690:intron 30.0%
ACACCACAGTTAATACAATT+TGG - chr1_3:25837836-25837855 None:intergenic 30.0%
TATTAACTGTGGTGTTTGTA+TGG + chr1_3:25837841-25837860 Msa0111690:CDS 30.0%
ATTAACTGTGGTGTTTGTAT+GGG + chr1_3:25837842-25837861 Msa0111690:CDS 30.0%
ATGATGTGAGTATTAATCCT+AGG + chr1_3:25837900-25837919 Msa0111690:intron 30.0%
CTGCATCATATAAAAGGAAA+CGG - chr1_3:25838043-25838062 None:intergenic 30.0%
AATTGCATCATTATTAGGGA+TGG + chr1_3:25838149-25838168 Msa0111690:intron 30.0%
!!! GATGGTAACATGTTTTAATG+CGG + chr1_3:25838167-25838186 Msa0111690:intron 30.0%
! AAATATTTTATGGGATCGGA+GGG - chr1_3:25838264-25838283 None:intergenic 30.0%
! TAAATATTTTATGGGATCGG+AGG - chr1_3:25838265-25838284 None:intergenic 30.0%
!!! TCAACTTTACCCTGTTTTTA+GGG + chr1_3:25838317-25838336 Msa0111690:intron 30.0%
CCAAATAAATCCCTAAAAAC+AGG - chr1_3:25838330-25838349 None:intergenic 30.0%
!!! CCTGTTTTTAGGGATTTATT+TGG + chr1_3:25838327-25838346 Msa0111690:intron 30.0%
AAAATCAATCAGTTAAGGCA+AGG - chr1_3:25838459-25838478 None:intergenic 30.0%
!!! TGATATTTTTTGCACAGAAC+TGG + chr1_3:25838478-25838497 Msa0111690:intron 30.0%
TAGACTAATCAAAACGCATA+TGG - chr1_3:25838561-25838580 None:intergenic 30.0%
CGTTTGACATTCATGATTAT+AGG + chr1_3:25838619-25838638 Msa0111690:intron 30.0%
!!! GTCTGTTTTTATATTTCTGG+AGG + chr1_3:25838962-25838981 Msa0111690:intron 30.0%
GAACAATATTCAGAAAAGGA+TGG - chr1_3:25839149-25839168 None:intergenic 30.0%
CTATACTTGATATGAATGAC+AGG - chr1_3:25839490-25839509 None:intergenic 30.0%
! TTCATGTCTTATTGTTGCTT+TGG + chr1_3:25839526-25839545 Msa0111690:intron 30.0%
CCAAATTAAGTGAGATGAAA+TGG - chr1_3:25839813-25839832 None:intergenic 30.0%
CCATTTCATCTCACTTAATT+TGG + chr1_3:25839810-25839829 Msa0111690:three_prime_UTR 30.0%
ATTATTCCATTGTGTCTAAG+CGG - chr1_3:25839899-25839918 None:intergenic 30.0%
AAACTAGATTAAACCACCTT+CGG - chr1_3:25840135-25840154 None:intergenic 30.0%
GTCCTTGAAGATAGATTGAT+CGG + chr1_3:25834312-25834331 Msa0111690:five_prime_UTR 35.0%
! CTTACCCTGTTTTACACAAA+AGG - chr1_3:25834695-25834714 None:intergenic 35.0%
! CTTTTGTGTAAAACAGGGTA+AGG + chr1_3:25834693-25834712 Msa0111690:five_prime_UTR 35.0%
TGTACAATACACCAAATGGT+GGG + chr1_3:25834719-25834738 Msa0111690:five_prime_UTR 35.0%
ATTGATATGAGTGTGTACCA+AGG + chr1_3:25834857-25834876 Msa0111690:five_prime_UTR 35.0%
!!! TACCAAGGCCTTTTGTTTTA+AGG + chr1_3:25834872-25834891 Msa0111690:five_prime_UTR 35.0%
AATGAAGCACAAATACTCCT+CGG + chr1_3:25834900-25834919 Msa0111690:five_prime_UTR 35.0%
ATAATCATATGTGTGGGTGT+CGG - chr1_3:25834961-25834980 None:intergenic 35.0%
! AATAGGATTACTGGTTAGAC+TGG + chr1_3:25835083-25835102 Msa0111690:five_prime_UTR 35.0%
! AAGAAGTTTTGCGAAAACCA+TGG - chr1_3:25835214-25835233 None:intergenic 35.0%
TTTCCAGCTATGATTCAATC+CGG + chr1_3:25835232-25835251 Msa0111690:five_prime_UTR 35.0%
!! TGTGACTCTGTAATTTTTGG+AGG + chr1_3:25835494-25835513 Msa0111690:five_prime_UTR 35.0%
!! GTGACTCTGTAATTTTTGGA+GGG + chr1_3:25835495-25835514 Msa0111690:five_prime_UTR 35.0%
AAAAAATTGCTTCCTGCAGT+TGG - chr1_3:25835572-25835591 None:intergenic 35.0%
TGTCCGACAAAGAAACAAAA+AGG - chr1_3:25835744-25835763 None:intergenic 35.0%
TGGAAGTTGGAAGGAAAAAA+CGG - chr1_3:25835827-25835846 None:intergenic 35.0%
CAACAAAGACAAAAAACGGT+TGG - chr1_3:25835847-25835866 None:intergenic 35.0%
!!! CAACCGTTTTTTGTCTTTGT+TGG + chr1_3:25835845-25835864 Msa0111690:five_prime_UTR 35.0%
! AAACAAGAAGGTTTTCAGCA+GGG - chr1_3:25835878-25835897 None:intergenic 35.0%
! TAAACAAGAAGGTTTTCAGC+AGG - chr1_3:25835879-25835898 None:intergenic 35.0%
! TGTCATTAGTTTACTCCCAA+GGG + chr1_3:25835959-25835978 Msa0111690:five_prime_UTR 35.0%
TATCATGGTGAAGACTATAC+TGG + chr1_3:25835986-25836005 Msa0111690:five_prime_UTR 35.0%
ATCATGGTGAAGACTATACT+GGG + chr1_3:25835987-25836006 Msa0111690:five_prime_UTR 35.0%
CAATGCTGAACAACACTTTA+TGG + chr1_3:25836059-25836078 Msa0111690:five_prime_UTR 35.0%
! TCTTTTGGTAGACATGTTTC+CGG + chr1_3:25836186-25836205 Msa0111690:five_prime_UTR 35.0%
!! GATTCCAGATTTGATTTTGG+AGG - chr1_3:25836609-25836628 None:intergenic 35.0%
CTTGTTCATATGCTTCTTTC+TGG + chr1_3:25836708-25836727 Msa0111690:intron 35.0%
!! CAGGTGTTTTTATCAACTTG+GGG + chr1_3:25837101-25837120 Msa0111690:intron 35.0%
! GGAAAAGGTGCAAAAATTTG+TGG - chr1_3:25837146-25837165 None:intergenic 35.0%
!!! CACCTTTTCCTGTTATTTCA+TGG + chr1_3:25837156-25837175 Msa0111690:intron 35.0%
GAATATAATACATGCCCACT+AGG + chr1_3:25837464-25837483 Msa0111690:intron 35.0%
!! ATATAATCATAGGGAGCACT+AGG - chr1_3:25837520-25837539 None:intergenic 35.0%
CTGTTAAGCTTATTACTGTC+TGG + chr1_3:25837579-25837598 Msa0111690:intron 35.0%
TTAAGCTTATTACTGTCTGG+AGG + chr1_3:25837582-25837601 Msa0111690:intron 35.0%
CAGCCAAATTGTATTAACTG+TGG + chr1_3:25837830-25837849 Msa0111690:CDS 35.0%
CAAAAAGGAATCTCATTCCT+AGG - chr1_3:25837920-25837939 None:intergenic 35.0%
AAATTCCACAGCCATTACAA+TGG - chr1_3:25838083-25838102 None:intergenic 35.0%
GCAGGTATGAAATGATAATC+TGG + chr1_3:25838103-25838122 Msa0111690:intron 35.0%
!! CTCAACTTTACCCTGTTTTT+AGG + chr1_3:25838316-25838335 Msa0111690:intron 35.0%
!!! TATTTTTTGCACAGAACTGG+TGG + chr1_3:25838481-25838500 Msa0111690:intron 35.0%
TTCTTCCATTGTAACAAGTG+TGG + chr1_3:25838514-25838533 Msa0111690:CDS 35.0%
TCATGGTTTAGAAACAGCTT+AGG + chr1_3:25838740-25838759 Msa0111690:intron 35.0%
ATGAAATGAGAGAACATCAC+CGG + chr1_3:25839088-25839107 Msa0111690:CDS 35.0%
CTTGTATTTGCTTGTATACC+AGG + chr1_3:25839174-25839193 Msa0111690:intron 35.0%
TAACCAACAGTAAGGAAAAG+CGG - chr1_3:25839320-25839339 None:intergenic 35.0%
CGATATGCACATGTATGTAT+TGG + chr1_3:25839399-25839418 Msa0111690:intron 35.0%
TGGATAGAACACTAAGAACT+AGG + chr1_3:25839419-25839438 Msa0111690:intron 35.0%
ACTTGATATGAATGACAGGT+AGG - chr1_3:25839486-25839505 None:intergenic 35.0%
!! ATGTCTTATTGTTGCTTTGG+AGG + chr1_3:25839529-25839548 Msa0111690:intron 35.0%
TCAATGCATATTGAAGGAGA+AGG - chr1_3:25839581-25839600 None:intergenic 35.0%
TGACTCTCAATGCATATTGA+AGG - chr1_3:25839587-25839606 None:intergenic 35.0%
CATTGAGAGTCAGTTATTTG+TGG + chr1_3:25839595-25839614 Msa0111690:intron 35.0%
!! TCTCACTTAATTTGGTGTCA+AGG + chr1_3:25839818-25839837 Msa0111690:three_prime_UTR 35.0%
! CTCAATGCTTTTCTCTCTTT+TGG + chr1_3:25839849-25839868 Msa0111690:three_prime_UTR 35.0%
!!! TTTTCTCTCTTTTGGCTTCA+AGG + chr1_3:25839857-25839876 Msa0111690:three_prime_UTR 35.0%
TTATTCCATTGTGTCTAAGC+GGG - chr1_3:25839898-25839917 None:intergenic 35.0%
!! TGTTTAGTTTAGTTTGGAGG+TGG + chr1_3:25839952-25839971 Msa0111690:three_prime_UTR 35.0%
GTATTTGCATTCAGACACAA+TGG + chr1_3:25840070-25840089 Msa0111690:three_prime_UTR 35.0%
GAAGGTGGTTTAATCTAGTT+TGG + chr1_3:25840134-25840153 Msa0111690:three_prime_UTR 35.0%
CTCCGATCAATCTATCTTCA+AGG - chr1_3:25834317-25834336 None:intergenic 40.0%
CTTGAAGATAGATTGATCGG+AGG + chr1_3:25834315-25834334 Msa0111690:five_prime_UTR 40.0%
ACGGCGATTGAATTGATGTT+GGG - chr1_3:25834345-25834364 None:intergenic 40.0%
AACGGCGATTGAATTGATGT+TGG - chr1_3:25834346-25834365 None:intergenic 40.0%
GCTGTGTACAATACACCAAA+TGG + chr1_3:25834715-25834734 Msa0111690:five_prime_UTR 40.0%
GTGTACAATACACCAAATGG+TGG + chr1_3:25834718-25834737 Msa0111690:five_prime_UTR 40.0%
!! GTACGTGGCATTTGATTTTG+TGG + chr1_3:25834819-25834838 Msa0111690:five_prime_UTR 40.0%
TGCCTTAAAACAAAAGGCCT+TGG - chr1_3:25834877-25834896 None:intergenic 40.0%
TGTCTGAGTACATGCTTCAT+AGG + chr1_3:25835017-25835036 Msa0111690:five_prime_UTR 40.0%
TTCAATCCGGTTCCTGATTA+TGG + chr1_3:25835245-25835264 Msa0111690:five_prime_UTR 40.0%
CACAAACCATAATCAGGAAC+CGG - chr1_3:25835254-25835273 None:intergenic 40.0%
!! TTTTAGGAGACTCAAGTCGA+GGG + chr1_3:25835368-25835387 Msa0111690:five_prime_UTR 40.0%
TAGGTAGAAAAGTCTTTCGC+AGG + chr1_3:25835424-25835443 Msa0111690:five_prime_UTR 40.0%
AGGTAGAAAAGTCTTTCGCA+GGG + chr1_3:25835425-25835444 Msa0111690:five_prime_UTR 40.0%
!! ACTCTGTAATTTTTGGAGGG+AGG + chr1_3:25835498-25835517 Msa0111690:five_prime_UTR 40.0%
GCAACTGCAGAAATACAGAT+GGG - chr1_3:25835613-25835632 None:intergenic 40.0%
TGCAACTGCAGAAATACAGA+TGG - chr1_3:25835614-25835633 None:intergenic 40.0%
! TAGCATGGACTGTAAGAGTT+TGG + chr1_3:25835676-25835695 Msa0111690:five_prime_UTR 40.0%
AGCTCCAACAACATCAAAGT+TGG - chr1_3:25835704-25835723 None:intergenic 40.0%
ATGTTGTTGGAGCTTCGTAT+GGG + chr1_3:25835710-25835729 Msa0111690:five_prime_UTR 40.0%
AAAAACGGTTGGAAGTTGGA+AGG - chr1_3:25835836-25835855 None:intergenic 40.0%
GACAAAAAACGGTTGGAAGT+TGG - chr1_3:25835840-25835859 None:intergenic 40.0%
CTATGTTCACTGCCAAATTG+AGG - chr1_3:25835903-25835922 None:intergenic 40.0%
AGTGAACATAGTTCACCTTC+AGG + chr1_3:25835912-25835931 Msa0111690:five_prime_UTR 40.0%
CTAATAACTACGTCACCTGA+AGG - chr1_3:25835930-25835949 None:intergenic 40.0%
! GTGTCATTAGTTTACTCCCA+AGG + chr1_3:25835958-25835977 Msa0111690:five_prime_UTR 40.0%
TCACCATGATAGATTCCCTT+GGG - chr1_3:25835977-25835996 None:intergenic 40.0%
TTCACCATGATAGATTCCCT+TGG - chr1_3:25835978-25835997 None:intergenic 40.0%
TCATGGTGAAGACTATACTG+GGG + chr1_3:25835988-25836007 Msa0111690:five_prime_UTR 40.0%
TGGTAAGTTTCGGTTTCTGA+AGG + chr1_3:25836033-25836052 Msa0111690:five_prime_UTR 40.0%
GGTAAGTTTCGGTTTCTGAA+GGG + chr1_3:25836034-25836053 Msa0111690:five_prime_UTR 40.0%
! GTAAGTTTCGGTTTCTGAAG+GGG + chr1_3:25836035-25836054 Msa0111690:five_prime_UTR 40.0%
GCTGAACAACACTTTATGGT+AGG + chr1_3:25836063-25836082 Msa0111690:intron 40.0%
! CTTTTGGTAGACATGTTTCC+GGG + chr1_3:25836187-25836206 Msa0111690:five_prime_UTR 40.0%
!! GTTTTGTTGTGTTCCTCTCT+TGG + chr1_3:25836278-25836297 Msa0111690:five_prime_UTR 40.0%
AATCACCATTACTCCAAGAG+AGG - chr1_3:25836294-25836313 None:intergenic 40.0%
TCTCTTGGAGTAATGGTGAT+TGG + chr1_3:25836293-25836312 Msa0111690:five_prime_UTR 40.0%
!! CAATGCATTTGGTGTTTACC+TGG + chr1_3:25836380-25836399 Msa0111690:five_prime_UTR 40.0%
TGGAGGATTAACGTCTTCTT+GGG - chr1_3:25836592-25836611 None:intergenic 40.0%
TTGGAGGATTAACGTCTTCT+TGG - chr1_3:25836593-25836612 None:intergenic 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - chr1_3:25836854-25836873 None:intergenic 40.0%
ACTTTGTGCAACTGAACAAG+AGG + chr1_3:25837239-25837258 Msa0111690:CDS 40.0%
ATAATACATGCCCACTAGGT+TGG + chr1_3:25837468-25837487 Msa0111690:intron 40.0%
GCAAGGAATTAGAGTCTACA+AGG - chr1_3:25837498-25837517 None:intergenic 40.0%
! ATTCCAGATGTTTTGCGCTA+TGG + chr1_3:25837607-25837626 Msa0111690:intron 40.0%
AAACAGTTTCAGCCAGCATA+TGG - chr1_3:25837676-25837695 None:intergenic 40.0%
TACACTAGTTATAGACTCGC+TGG - chr1_3:25838016-25838035 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG + chr1_3:25838069-25838088 Msa0111690:CDS 40.0%
ACAGGGTAAAGTTGAGTACT+AGG - chr1_3:25838312-25838331 None:intergenic 40.0%
ATCAGTTAAGGCAAGGCAAA+AGG - chr1_3:25838452-25838471 None:intergenic 40.0%
! GCTTACCACACTTGTTACAA+TGG - chr1_3:25838522-25838541 None:intergenic 40.0%
ATGTTACCTCGAAACACACA+GGG - chr1_3:25838711-25838730 None:intergenic 40.0%
AATGTTACCTCGAAACACAC+AGG - chr1_3:25838712-25838731 None:intergenic 40.0%
! GAAATTGTTGTTATGCCGTG+CGG + chr1_3:25839039-25839058 Msa0111690:CDS 40.0%
! TTATGGATTGTATGTCCGCA+CGG - chr1_3:25839057-25839076 None:intergenic 40.0%
AGAACGACTTCGAACATAGA+GGG - chr1_3:25839208-25839227 None:intergenic 40.0%
AGTCGTTCTGTGATATGTCA+AGG + chr1_3:25839219-25839238 Msa0111690:CDS 40.0%
GTCGTTCTGTGATATGTCAA+GGG + chr1_3:25839220-25839239 Msa0111690:CDS 40.0%
TCTGTGATATGTCAAGGGTT+TGG + chr1_3:25839225-25839244 Msa0111690:CDS 40.0%
CTGTGATATGTCAAGGGTTT+GGG + chr1_3:25839226-25839245 Msa0111690:CDS 40.0%
! TTTTGGTATTGCTCAGGCAT+TGG - chr1_3:25839281-25839300 None:intergenic 40.0%
AAAATGGAACCGAACATGAC+CGG - chr1_3:25839706-25839725 None:intergenic 40.0%
! TCATGTTCGGTTCCATTTTG+TGG + chr1_3:25839707-25839726 Msa0111690:CDS 40.0%
!!! GGCATTTTAGAGCCACAAAA+TGG - chr1_3:25839722-25839741 None:intergenic 40.0%
TGTTATAGGAGTTGCAGTTG+AGG - chr1_3:25839743-25839762 None:intergenic 40.0%
TATTCCATTGTGTCTAAGCG+GGG - chr1_3:25839897-25839916 None:intergenic 40.0%
! GGTGGTTTAATCTAGTTTGG+AGG + chr1_3:25840137-25840156 Msa0111690:three_prime_UTR 40.0%
TTTACCCTAGAAGAGTTAGC+TGG + chr1_3:25840223-25840242 Msa0111690:three_prime_UTR 40.0%
CTTACCAGCTAACTCTTCTA+GGG - chr1_3:25840230-25840249 None:intergenic 40.0%
TCTTACCAGCTAACTCTTCT+AGG - chr1_3:25840231-25840250 None:intergenic 40.0%
GAGTTTGCATTGTAACCTCA+AGG + chr1_3:25840249-25840268 Msa0111690:three_prime_UTR 40.0%
! TTGTTTGTTCGTTTGGCTCG+AGG + chr1_3:25834597-25834616 Msa0111690:five_prime_UTR 45.0%
! TGTTTGTTCGTTTGGCTCGA+GGG + chr1_3:25834598-25834617 Msa0111690:five_prime_UTR 45.0%
GTTGTTGTCATGCGACTGAA+AGG + chr1_3:25834644-25834663 Msa0111690:five_prime_UTR 45.0%
! GTTGCCCTTGTTTGTTCGTT+TGG + chr1_3:25834786-25834805 Msa0111690:five_prime_UTR 45.0%
CGAGCCAAACGAACAAACAA+GGG - chr1_3:25834597-25834616 None:intergenic 45.0%
ACGAGCCAAACGAACAAACA+AGG - chr1_3:25834794-25834813 None:intergenic 45.0%
! TTGTTCGTTTGGCTCGTGTT+TGG + chr1_3:25834797-25834816 Msa0111690:five_prime_UTR 45.0%
GCACAAATACTCCTCGGATT+AGG + chr1_3:25834906-25834925 Msa0111690:five_prime_UTR 45.0%
GAACCGGATTGAATCATAGC+TGG - chr1_3:25835238-25835257 None:intergenic 45.0%
!! CTTTTAGGAGACTCAAGTCG+AGG + chr1_3:25835367-25835386 Msa0111690:five_prime_UTR 45.0%
CAACGTAAGCATATGCACCT+GGG - chr1_3:25835468-25835487 None:intergenic 45.0%
! ATGGGCAAGGCATTAAAAGG+AGG - chr1_3:25835595-25835614 None:intergenic 45.0%
! CAGATGGGCAAGGCATTAAA+AGG - chr1_3:25835598-25835617 None:intergenic 45.0%
TGCAGAAATACAGATGGGCA+AGG - chr1_3:25835608-25835627 None:intergenic 45.0%
GGAGCCAACTTTGATGTTGT+TGG + chr1_3:25835697-25835716 Msa0111690:five_prime_UTR 45.0%
GATGTTGTTGGAGCTTCGTA+TGG + chr1_3:25835709-25835728 Msa0111690:five_prime_UTR 45.0%
TTGTCGGACAGCAAGAAGAA+TGG + chr1_3:25835754-25835773 Msa0111690:five_prime_UTR 45.0%
ACTCCCAAGGGAATCTATCA+TGG + chr1_3:25835971-25835990 Msa0111690:five_prime_UTR 45.0%
TATGGTAGGTTCACCCTTTG+TGG + chr1_3:25836077-25836096 Msa0111690:intron 45.0%
TTGATTCCTCGAAGAACTCC+CGG - chr1_3:25836208-25836227 None:intergenic 45.0%
GTGTTCCTCTCTTGGAGTAA+TGG + chr1_3:25836286-25836305 Msa0111690:five_prime_UTR 45.0%
! TTGGTGTTTACCTGGCTTGA+TGG + chr1_3:25836388-25836407 Msa0111690:five_prime_UTR 45.0%
! TGGTGTTTACCTGGCTTGAT+GGG + chr1_3:25836389-25836408 Msa0111690:five_prime_UTR 45.0%
AGCTTGTATCATGGGTGATG+TGG + chr1_3:25836527-25836546 Msa0111690:exon 45.0%
! TCAAATCTGGAATCCTTGCC+TGG + chr1_3:25836615-25836634 Msa0111690:CDS 45.0%
TTTGCAGATGCCAACACTAC+CGG + chr1_3:25836778-25836797 Msa0111690:intron 45.0%
TTGCCTCATTGTGACAATGG+CGG - chr1_3:25836851-25836870 None:intergenic 45.0%
!! ACACCTGTTTGACTTGGTGT+CGG - chr1_3:25837088-25837107 None:intergenic 45.0%
CTACCATAGCGCAAAACATC+TGG - chr1_3:25837613-25837632 None:intergenic 45.0%
!! CAGCATATGGTCTTGTGCTA+TGG - chr1_3:25837663-25837682 None:intergenic 45.0%
CATAGCACAAGACCATATGC+TGG + chr1_3:25837661-25837680 Msa0111690:intron 45.0%
CAGTACCATTGTAATGGCTG+TGG + chr1_3:25838075-25838094 Msa0111690:CDS 45.0%
GTAATGGCTGTGGAATTTGC+AGG + chr1_3:25838085-25838104 Msa0111690:CDS 45.0%
! ATTTTATGGGATCGGAGGGA+GGG - chr1_3:25838260-25838279 None:intergenic 45.0%
! TATTTTATGGGATCGGAGGG+AGG - chr1_3:25838261-25838280 None:intergenic 45.0%
! TTGTTGCTTCTCAACTCTGC+TGG + chr1_3:25838642-25838661 Msa0111690:intron 45.0%
GATGGAGAACTGAAGAGACT+AGG - chr1_3:25839131-25839150 None:intergenic 45.0%
! ACATAGAGGGCATGTATACC+TGG - chr1_3:25839195-25839214 None:intergenic 45.0%
CAGAACGACTTCGAACATAG+AGG - chr1_3:25839209-25839228 None:intergenic 45.0%
!! TCTCCGCTTTTCCTTACTGT+TGG + chr1_3:25839314-25839333 Msa0111690:intron 45.0%
CTGATTGTGTTACCCGTAAC+AGG + chr1_3:25839650-25839669 Msa0111690:intron 45.0%
TGTGTTACCCGTAACAGGTT+TGG + chr1_3:25839655-25839674 Msa0111690:intron 45.0%
ACAGGATCCAAACCTGTTAC+GGG - chr1_3:25839665-25839684 None:intergenic 45.0%
CACAGGATCCAAACCTGTTA+CGG - chr1_3:25839666-25839685 None:intergenic 45.0%
TCTCGTCTGTCGTGTGTTAT+AGG - chr1_3:25839757-25839776 None:intergenic 45.0%
TATAACACACGACAGACGAG+AGG + chr1_3:25839756-25839775 Msa0111690:CDS 45.0%
TATCATTTGTCTCGCACCGA+AGG + chr1_3:25840116-25840135 Msa0111690:three_prime_UTR 45.0%
!!! ACTATTTTTTTTTTTTTTTT+TGG + chr1_3:25837413-25837432 Msa0111690:intron 5.0%
! GTTTGTTCGTTTGGCTCGAG+GGG + chr1_3:25834599-25834618 Msa0111690:five_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_3:25834628-25834647 None:intergenic 50.0%
ACGAACAAACAAGGGCAACC+CGG - chr1_3:25834785-25834804 None:intergenic 50.0%
! TTTGGCTCGTGTTTGGTACG+TGG + chr1_3:25834804-25834823 Msa0111690:five_prime_UTR 50.0%
TTCATGTCTCGCAGTCACCA+TGG + chr1_3:25835194-25835213 Msa0111690:five_prime_UTR 50.0%
GCAACGTAAGCATATGCACC+TGG - chr1_3:25835469-25835488 None:intergenic 50.0%
TTGCTTCCTGCAGTTGGAGA+TGG - chr1_3:25835566-25835585 None:intergenic 50.0%
TTGTTGGAGCTTCGTATGGG+TGG + chr1_3:25835713-25835732 Msa0111690:five_prime_UTR 50.0%
ATGTTTCCGGGAGTTCTTCG+AGG + chr1_3:25836199-25836218 Msa0111690:five_prime_UTR 50.0%
! TGCTGGTTACAGTTGCTCTG+CGG + chr1_3:25836339-25836358 Msa0111690:five_prime_UTR 50.0%
! GGTGTTTACCTGGCTTGATG+GGG + chr1_3:25836390-25836409 Msa0111690:five_prime_UTR 50.0%
TTTAGTCACCCCATCAAGCC+AGG - chr1_3:25836401-25836420 None:intergenic 50.0%
GAAGCAGGGCAGTAAGCTTA+AGG - chr1_3:25836477-25836496 None:intergenic 50.0%
!! CTTGCCTGGAGAAGCATCAA+GGG + chr1_3:25836629-25836648 Msa0111690:CDS 50.0%
GATTCCCTTGATGCTTCTCC+AGG - chr1_3:25836636-25836655 None:intergenic 50.0%
TGCAACAAGGAGCCCTGATT+CGG - chr1_3:25836812-25836831 None:intergenic 50.0%
TTGCCGCCATTGTCACAATG+AGG + chr1_3:25836845-25836864 Msa0111690:CDS 50.0%
!! ACCTGTTTGACTTGGTGTCG+GGG - chr1_3:25837086-25837105 None:intergenic 50.0%
!! CACCTGTTTGACTTGGTGTC+GGG - chr1_3:25837087-25837106 None:intergenic 50.0%
ACAAGGTGTGCCAACCTAGT+GGG - chr1_3:25837481-25837500 None:intergenic 50.0%
TACAAGGTGTGCCAACCTAG+TGG - chr1_3:25837482-25837501 None:intergenic 50.0%
!! ATCATAGGGAGCACTAGGCA+AGG - chr1_3:25837515-25837534 None:intergenic 50.0%
GGAAAACAGTCACACCTGTG+TGG + chr1_3:25838663-25838682 Msa0111690:intron 50.0%
AACAGTCACACCTGTGTGGA+AGG + chr1_3:25838667-25838686 Msa0111690:intron 50.0%
ATGCATTGCTCCTTCCACAC+AGG - chr1_3:25838680-25838699 None:intergenic 50.0%
TGATTGCCCTGTGTGTTTCG+AGG + chr1_3:25838702-25838721 Msa0111690:intron 50.0%
GTCAAGGGTTTGGGAGAGAT+TGG + chr1_3:25839235-25839254 Msa0111690:CDS 50.0%
TGGATCCTGTGCAATGACTG+CGG + chr1_3:25839675-25839694 Msa0111690:CDS 50.0%
TGTTTCCGCAGTCATTGCAC+AGG - chr1_3:25839683-25839702 None:intergenic 50.0%
TGCAATGACTGCGGAAACAC+CGG + chr1_3:25839684-25839703 Msa0111690:CDS 50.0%
TCAACCCCGCTTAGACACAA+TGG + chr1_3:25839890-25839909 Msa0111690:three_prime_UTR 50.0%
! TTTGGCTCGAGGGGTAACCT+TGG + chr1_3:25834608-25834627 Msa0111690:five_prime_UTR 55.0%
TCATGCGACTGAAAGGTCGC+AGG + chr1_3:25834651-25834670 Msa0111690:five_prime_UTR 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr1_3:25834758-25834777 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr1_3:25834759-25834778 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCG+TGG + chr1_3:25834916-25834935 Msa0111690:five_prime_UTR 55.0%
ACCACGACACACCTAATCCG+AGG - chr1_3:25834920-25834939 None:intergenic 55.0%
!! GTGTGGGTGTCGGACATGAT+AGG - chr1_3:25834951-25834970 None:intergenic 55.0%
CATCCGAAGTGGAACTACCC+AGG + chr1_3:25835448-25835467 Msa0111690:five_prime_UTR 55.0%
GCACCTGGGTAGTTCCACTT+CGG - chr1_3:25835454-25835473 None:intergenic 55.0%
TTGGAGCCATCTCCAACTGC+AGG + chr1_3:25835557-25835576 Msa0111690:five_prime_UTR 55.0%
CCTTGATGCTTCTCCAGGCA+AGG - chr1_3:25836631-25836650 None:intergenic 55.0%
!! CCTTGCCTGGAGAAGCATCA+AGG + chr1_3:25836628-25836647 Msa0111690:CDS 55.0%
GGCATCTTCTCCGGTAGTGT+TGG - chr1_3:25836791-25836810 None:intergenic 55.0%
ACCGGAGAAGATGCCGAATC+AGG + chr1_3:25836796-25836815 Msa0111690:CDS 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG - chr1_3:25836800-25836819 None:intergenic 55.0%
CCGGAGAAGATGCCGAATCA+GGG + chr1_3:25836797-25836816 Msa0111690:CDS 55.0%
! GGAGCTTTGTGAGCACTCAC+CGG - chr1_3:25839110-25839129 None:intergenic 55.0%
GCGGAAACACCGGTCATGTT+CGG + chr1_3:25839694-25839713 Msa0111690:CDS 55.0%
CAGACGAGAGGATGAGCTAG+TGG + chr1_3:25839768-25839787 Msa0111690:exon 55.0%
CATTTGTCTCGCACCGAAGG+TGG + chr1_3:25840119-25840138 Msa0111690:three_prime_UTR 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_3:25834617-25834636 Msa0111690:five_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_3:25834731-25834750 Msa0111690:five_prime_UTR 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr1_3:25834746-25834765 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr1_3:25834747-25834766 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr1_3:25834746-25834765 Msa0111690:five_prime_UTR 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr1_3:25834747-25834766 Msa0111690:five_prime_UTR 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr1_3:25834763-25834782 Msa0111690:five_prime_UTR 60.0%
! CTTTCGCAGGGCATCCGAAG+TGG + chr1_3:25835437-25835456 Msa0111690:five_prime_UTR 60.0%
GCCCCGACACCAAGTCAAAC+AGG + chr1_3:25837082-25837101 Msa0111690:CDS 60.0%
TTATGGGATCGGAGGGAGGG+TGG - chr1_3:25838257-25838276 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1_3:25834733-25834752 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr1_3:25834748-25834767 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr1_3:25834752-25834771 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr1_3:25834753-25834772 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr1_3:25834764-25834783 Msa0111690:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 25834306 25840285 25834306 ID=Msa0111690;Name=Msa0111690
chr1_3 mRNA 25834306 25840285 25834306 ID=Msa0111690-mRNA-1;Parent=Msa0111690;Name=Msa0111690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=2135|0.72|0.91|0.91|0.63|0.58|12|503|283
chr1_3 exon 25834306 25836080 25834306 ID=Msa0111690-mRNA-1:exon:8743;Parent=Msa0111690-mRNA-1
chr1_3 exon 25836177 25836700 25836177 ID=Msa0111690-mRNA-1:exon:8744;Parent=Msa0111690-mRNA-1
chr1_3 exon 25836785 25836872 25836785 ID=Msa0111690-mRNA-1:exon:8745;Parent=Msa0111690-mRNA-1
chr1_3 exon 25837044 25837103 25837044 ID=Msa0111690-mRNA-1:exon:8746;Parent=Msa0111690-mRNA-1
chr1_3 exon 25837228 25837260 25837228 ID=Msa0111690-mRNA-1:exon:8747;Parent=Msa0111690-mRNA-1
chr1_3 exon 25837614 25837642 25837614 ID=Msa0111690-mRNA-1:exon:8748;Parent=Msa0111690-mRNA-1
chr1_3 exon 25837827 25837904 25837827 ID=Msa0111690-mRNA-1:exon:8749;Parent=Msa0111690-mRNA-1
chr1_3 exon 25838063 25838106 25838063 ID=Msa0111690-mRNA-1:exon:8750;Parent=Msa0111690-mRNA-1
chr1_3 exon 25838495 25838535 25838495 ID=Msa0111690-mRNA-1:exon:8751;Parent=Msa0111690-mRNA-1
chr1_3 exon 25839018 25839109 25839018 ID=Msa0111690-mRNA-1:exon:8752;Parent=Msa0111690-mRNA-1
chr1_3 exon 25839196 25839307 25839196 ID=Msa0111690-mRNA-1:exon:8753;Parent=Msa0111690-mRNA-1
chr1_3 exon 25839672 25840285 25839672 ID=Msa0111690-mRNA-1:exon:8754;Parent=Msa0111690-mRNA-1
chr1_3 five_prime_UTR 25834306 25836080 25834306 ID=Msa0111690-mRNA-1:five_prime_utr;Parent=Msa0111690-mRNA-1
chr1_3 five_prime_UTR 25836177 25836536 25836177 ID=Msa0111690-mRNA-1:five_prime_utr;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25836537 25836700 25836537 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25836785 25836872 25836785 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25837044 25837103 25837044 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25837228 25837260 25837228 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25837614 25837642 25837614 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25837827 25837904 25837827 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25838063 25838106 25838063 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25838495 25838535 25838495 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25839018 25839109 25839018 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25839196 25839307 25839196 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 CDS 25839672 25839782 25839672 ID=Msa0111690-mRNA-1:cds;Parent=Msa0111690-mRNA-1
chr1_3 three_prime_UTR 25839783 25840285 25839783 ID=Msa0111690-mRNA-1:three_prime_utr;Parent=Msa0111690-mRNA-1
Gene Sequence

>Msa0111690

ATGGGTGATGTGGCAGCGTTGCACTCTGAATGCAATGACACGAAACATACGACCCAAGAAGACGTTAATCCTCCAAAATCAAATCTGGAATCCTTGCCTGGAGAAGCATCAAGGGAATCTATAAACACAAATGATTTGCAAGATAAAGGATACATGGAATATGGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCTCCTTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTAGATTATAAACATAGACACGAAATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGCAACTGAACAAGAGATGTTTTGCGCTATGGTAGTTTCACGAATGTTCAGCCAAATTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGACTTTCTTCCATTGTAACAAGTGTGTATTTATTTGAATCAACAAAAGAAATTGTTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTATAGATGAAATGAGAGAACATCACCGGTATACATGCCCTCTATGTTCGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACGCCAATGCCTGAGCAATACCAAAATAAAATGGTTTGGATCCTGTGCAATGACTGCGGAAACACCGGTCATGTTCGGTTCCATTTTGTGGCTCTAAAATGCCTCAACTGCAACTCCTATAACACACGACAGACGAGAGGATGA
Protein sequence

>Msa0111690

MGDVAALHSECNDTKHTTQEDVNPPKSNLESLPGEASRESINTNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHEMPRHQVKQVICSLCATEQEMFCAMVVSRMFSQIVLTVVFVWASTSVRHASSLTMIYLSSSTIVMAVEFAELVDMRLSSIVTSVYLFESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIAATPMPEQYQNKMVWILCNDCGNTGHVRFHFVALKCLNCNSYNTRQTRG*