AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019540 MtrunA17_Chr1g0169881 72.093 301 66 3 1 283 1 301 1.31e-155 436
Msa0019540 MtrunA17_Chr1g0148421 60.841 309 88 5 1 283 1 302 2.55e-128 367
Msa0019540 MtrunA17_Chr3g0138621 54.341 311 112 6 1 283 1 309 7.49e-111 322
Msa0019540 MtrunA17_Chr7g0264931 49.804 255 104 3 50 283 18 269 8.55e-86 258
Msa0019540 MtrunA17_Chr4g0028121 45.455 275 119 6 29 282 40 304 9.23e-76 233
Msa0019540 MtrunA17_Chr2g0286331 42.688 253 120 4 48 279 10 258 8.63e-62 196
Msa0019540 MtrunA17_Chr8g0391161 45.455 99 53 1 181 279 1135 1232 2.63e-22 96.7
Msa0019540 MtrunA17_Chr6g0484171 43.434 99 55 1 181 279 1125 1222 3.58e-19 87.4
Msa0019540 MtrunA17_Chr4g0059881 41.000 100 58 1 180 279 1171 1269 3.13e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019540 AT5G25560.1 50.000 268 109 4 37 283 45 308 4.68e-89 267
Msa0019540 AT5G25560.5 50.000 268 109 4 37 283 45 308 4.68e-89 267
Msa0019540 AT5G25560.6 50.000 268 109 4 37 283 45 308 4.68e-89 267
Msa0019540 AT5G25560.2 50.000 268 109 4 37 283 45 308 4.68e-89 267
Msa0019540 AT5G25560.3 48.201 278 109 5 37 283 45 318 6.71e-86 259
Msa0019540 AT5G25560.4 48.507 268 108 5 37 283 45 303 3.25e-83 252
Msa0019540 AT5G22920.1 46.332 259 115 3 45 282 16 271 4.65e-78 239
Msa0019540 AT5G18650.1 42.248 258 122 5 44 279 6 258 7.81e-62 196
Msa0019540 AT5G22920.2 43.111 225 104 3 45 248 16 237 1.69e-58 187
Msa0019540 AT3G62970.1 38.095 273 140 7 30 280 10 275 2.43e-54 178
Msa0019540 AT3G62970.2 36.709 237 122 6 30 244 10 240 2.74e-43 148
Msa0019540 AT3G62970.3 35.683 227 118 6 30 234 10 230 1.27e-38 135
Msa0019540 AT1G74770.1 45.000 100 54 1 180 279 1159 1257 3.37e-23 99.8
Msa0019540 AT1G18910.1 45.000 100 54 1 180 279 1154 1252 2.21e-22 97.4
Msa0019540 AT3G18290.1 45.000 100 54 1 180 279 1141 1239 2.57e-22 97.1

Find 209 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTATTGTAATTTA+TGG 0.062295 1_1:+34037622 Msa0019540:five_prime_UTR
TTCAATCCGGTTCCTGATTA+TGG 0.195784 1_1:+34036634 Msa0019540:five_prime_UTR
CCATTTCATCTCACTTAATT+TGG 0.208166 1_1:+34041193 Msa0019540:three_prime_UTR
GATAAAGGATACATGGAATA+TGG 0.235762 1_1:+34038064 Msa0019540:CDS
CTTCTTGTTTAACCTCAATT+TGG 0.242671 1_1:+34037277 Msa0019540:five_prime_UTR
CGAACCAGTAATCCTATTAA+AGG 0.245080 1_1:-34036467 None:intergenic
TCTTACCAGCTAACTCTTCT+AGG 0.245920 1_1:-34041606 None:intergenic
ACACCACAGTTAATACAATT+TGG 0.247115 1_1:-34039217 None:intergenic
TCTCGTCTGTCGTGTGTTAT+AGG 0.247468 1_1:-34041137 None:intergenic
GAGTATTCATAATTGTAATT+AGG 0.251708 1_1:+34036546 Msa0019540:five_prime_UTR
TAACCCTTTAATAGGATTAC+TGG 0.255875 1_1:+34036463 Msa0019540:five_prime_UTR
CAATGCTGAACAACACTTTA+TGG 0.263522 1_1:+34037448 Msa0019540:five_prime_UTR
AAGGATTCCAGATTTGATTT+TGG 0.266935 1_1:-34037995 None:intergenic
TTAGGTTGTAACCCTTTAAT+AGG 0.268244 1_1:+34036455 Msa0019540:five_prime_UTR
AAACGATTTGACAAGGAAAA+TGG 0.273845 1_1:-34035761 None:intergenic
ATGAATGATTATATCAGTTT+AGG 0.287811 1_1:+34036787 Msa0019540:five_prime_UTR
AATAACCTCTTGTGTAAAAC+AGG 0.289548 1_1:+34036076 Msa0019540:five_prime_UTR
GTTGCCCTTGTTTGTTCGTT+TGG 0.303272 1_1:+34036175 Msa0019540:five_prime_UTR
TTGGTGTTTACCTGGCTTGA+TGG 0.304208 1_1:+34037774 Msa0019540:five_prime_UTR
TTACACAAGAGGTTATTTCT+AGG 0.304844 1_1:-34036070 None:intergenic
TTGGAGGATTAACGTCTTCT+TGG 0.305325 1_1:-34037976 None:intergenic
GAAGGTGGTTTAATCTAGTT+TGG 0.311338 1_1:+34041517 Msa0019540:three_prime_UTR
TAGCATGGACTGTAAGAGTT+TGG 0.322595 1_1:+34037065 Msa0019540:five_prime_UTR
CTGTGATATGTCAAGGGTTT+GGG 0.325412 1_1:+34040609 Msa0019540:CDS
ATTATATATATACATGGATT+TGG 0.330496 1_1:+34037402 Msa0019540:five_prime_UTR
CCAAATTAAGTGAGATGAAA+TGG 0.333323 1_1:-34041193 None:intergenic
CGAGTTTGATATAATTCAAC+AGG 0.333735 1_1:-34036502 None:intergenic
AAATAGGTTGGAATTTCTTT+TGG 0.337526 1_1:+34037557 Msa0019540:intron
ACCGGAGAAGATGCCGAATC+AGG 0.341031 1_1:+34038182 Msa0019540:CDS
ACAAATGATTTGCAAGATAA+AGG 0.341490 1_1:+34038049 Msa0019540:CDS
TTTAATAATGTTCATTGCTT+AGG 0.342214 1_1:+34036437 Msa0019540:five_prime_UTR
TGAGCAATACCAAAATAAAA+TGG 0.342214 1_1:+34040669 Msa0019540:CDS
TATTAACTGTGGTGTTTGTA+TGG 0.349579 1_1:+34039225 Msa0019540:CDS
TACATGGATTTGGTAAGTTT+CGG 0.354268 1_1:+34037412 Msa0019540:five_prime_UTR
GAATGGATTTGATACTAGTT+TGG 0.355229 1_1:+34037160 Msa0019540:five_prime_UTR
CACCTGTTTGACTTGGTGTC+GGG 0.359703 1_1:-34038469 None:intergenic
GTCAAGGGTTTGGGAGAGAT+TGG 0.368404 1_1:+34040618 Msa0019540:CDS
TGTCTGACAAAGAAACAAAA+AGG 0.375025 1_1:-34037130 None:intergenic
TAATCCTCCAAAATCAAATC+TGG 0.375712 1_1:+34037988 Msa0019540:CDS
TATCATGGTGAAGACTATAC+TGG 0.376021 1_1:+34037375 Msa0019540:five_prime_UTR
ATGGAAACTTTCAATCATAA+AGG 0.387266 1_1:-34041174 None:intergenic
AGGGGTAACCTTGGCGCAAC+TGG 0.387780 1_1:+34036007 Msa0019540:five_prime_UTR
TCTCTTGGAGTAATGGTGAT+TGG 0.389043 1_1:+34037679 Msa0019540:five_prime_UTR
CAAATCTGAAAGAAAATTGC+TGG 0.393169 1_1:-34036926 None:intergenic
CAAGAAATCAACAATGCATT+TGG 0.394892 1_1:+34037755 Msa0019540:five_prime_UTR
GGAGCCAACTTTGATGTTGT+TGG 0.395578 1_1:+34037086 Msa0019540:five_prime_UTR
TGGAGGATTAACGTCTTCTT+GGG 0.398592 1_1:-34037975 None:intergenic
TTACATAGCTGAATAACCTT+AGG 0.398690 1_1:+34036701 Msa0019540:five_prime_UTR
TCTGTGATATGTCAAGGGTT+TGG 0.400427 1_1:+34040608 Msa0019540:CDS
TGGTGTTTACCTGGCTTGAT+GGG 0.400828 1_1:+34037775 Msa0019540:five_prime_UTR
TGTCTGAGTACATGCTTCAT+AGG 0.406448 1_1:+34036406 Msa0019540:five_prime_UTR
CGAGAAGGGGTCCCACCATT+TGG 0.408824 1_1:-34036119 None:intergenic
CAATGCATTTGGTGTTTACC+TGG 0.410773 1_1:+34037766 Msa0019540:five_prime_UTR
GCACAAATACTCCTCGGATT+AGG 0.411206 1_1:+34036295 Msa0019540:five_prime_UTR
AAGATAAAAGAAGACTTAGA+TGG 0.411528 1_1:-34041368 None:intergenic
CTCCGATCAATCTATCTTCA+AGG 0.426689 1_1:-34035691 None:intergenic
CTAAATTTGTTCGTAAATGC+AGG 0.429992 1_1:+34037836 Msa0019540:five_prime_UTR
CAAATTGAGGTTAAACAAGA+AGG 0.433374 1_1:-34037276 None:intergenic
CAAATGGTGGGACCCCTTCT+CGG 0.434180 1_1:+34036120 Msa0019540:five_prime_UTR
TCAAAACACAAACCATAATC+AGG 0.437774 1_1:-34036646 None:intergenic
TGTTTAGTTTAGTTTGGAGG+TGG 0.439412 1_1:+34041335 Msa0019540:three_prime_UTR
TCAAATCTGGAATCCTTGCC+TGG 0.447006 1_1:+34038001 Msa0019540:CDS
GATTCACTTGATGCTTCTCC+AGG 0.447764 1_1:-34038019 None:intergenic
CCCTGATTCGGCATCTTCTC+CGG 0.448395 1_1:-34038183 None:intergenic
GAAGCAGGGCAGTAAGCTTA+AGG 0.448741 1_1:-34037860 None:intergenic
TATCAACTATATCTAGAAGC+AGG 0.449495 1_1:-34037875 None:intergenic
GTGTTCCTCTCTTGGAGTAA+TGG 0.454060 1_1:+34037672 Msa0019540:five_prime_UTR
ACTAGAGCTCCCGCATATGC+AGG 0.454860 1_1:-34036145 None:intergenic
CACAAACCATAATCAGGAAC+CGG 0.455020 1_1:-34036640 None:intergenic
GCCCCGACACCAAGTCAAAC+AGG 0.459750 1_1:+34038467 Msa0019540:CDS
TTTGAAGATAGCTTGTATCA+TGG 0.460287 1_1:+34037904 Msa0019540:exon
ATTCATTGCCTTAAAACAAA+AGG 0.460316 1_1:-34036269 None:intergenic
TTGTCAGACAGCAAGAAGAA+TGG 0.460521 1_1:+34037143 Msa0019540:five_prime_UTR
GATGTTGTTGGAGCTTCGTA+TGG 0.462211 1_1:+34037098 Msa0019540:five_prime_UTR
TTCTCGGACCCTGCATATGC+GGG 0.465530 1_1:+34036136 Msa0019540:five_prime_UTR
TGCAACAAGGAGCCCTGATT+CGG 0.470133 1_1:-34038195 None:intergenic
GAACCAGTAATCCTATTAAA+GGG 0.470282 1_1:-34036466 None:intergenic
CTCTTGTGTAAAACAGGGTA+AGG 0.472317 1_1:+34036082 Msa0019540:five_prime_UTR
TGTTTGTTCGTTTGGCTCGA+GGG 0.472633 1_1:+34035988 Msa0019540:five_prime_UTR
ATAAAGGATACATGGAATAT+GGG 0.477054 1_1:+34038065 Msa0019540:CDS
GCGGAAACACCGGTCATGTT+CGG 0.481081 1_1:+34041077 Msa0019540:CDS
TTGCTTCCTGCAGTTGGAGA+TGG 0.485580 1_1:-34036952 None:intergenic
CTATGTTCACTGCCAAATTG+AGG 0.485809 1_1:-34037289 None:intergenic
CTTCTCGGACCCTGCATATG+CGG 0.486907 1_1:+34036135 Msa0019540:five_prime_UTR
TTATTCCATTGTGTCTAAGC+GGG 0.487443 1_1:-34041278 None:intergenic
TGGTAAGTTTCGGTTTCTGA+AGG 0.488664 1_1:+34037422 Msa0019540:five_prime_UTR
TGCCTTAAAACAAAAGGCCT+TGG 0.490396 1_1:-34036263 None:intergenic
TTGAAGATAGCTTGTATCAT+GGG 0.490686 1_1:+34037905 Msa0019540:exon
GTAATGGCTGTGGAATTTGC+AGG 0.495528 1_1:+34039469 Msa0019540:CDS
ACGGCGATTGAATTGATGTT+GGG 0.496011 1_1:-34035719 None:intergenic
GCATATGCAGGGTCCGAGAA+GGG 0.496665 1_1:-34036133 None:intergenic
TTGATTCCTCGAAGAACTCC+CGG 0.499465 1_1:-34037591 None:intergenic
ATGCGGGAGCTCTAGTGCAC+CGG 0.500837 1_1:+34036152 Msa0019540:five_prime_UTR
TTGTTTGTTCGTTTGGCTCG+AGG 0.500922 1_1:+34035987 Msa0019540:five_prime_UTR
CAGAACGACTTCGAACATAG+AGG 0.501864 1_1:-34040589 None:intergenic
TCACCATGATAGATTCCCTT+GGG 0.506033 1_1:-34037363 None:intergenic
GTGTGGGTGTCGGACATGAT+AGG 0.508854 1_1:-34036337 None:intergenic
AAACTAGATTAAACCACCTT+CGG 0.513131 1_1:-34041515 None:intergenic
TTTCCAGCTATGATTCAATC+CGG 0.513161 1_1:+34036621 Msa0019540:five_prime_UTR
TAGGTAGAAAAGTCTTTCGC+AGG 0.514557 1_1:+34036813 Msa0019540:five_prime_UTR
GTGTCATTAGTTTACTCCCA+AGG 0.515247 1_1:+34037347 Msa0019540:five_prime_UTR
AACGGCGATTGAATTGATGT+TGG 0.516699 1_1:-34035720 None:intergenic
AGTGAACATAGTTCACCTTC+AGG 0.517150 1_1:+34037301 Msa0019540:five_prime_UTR
TACATAGCTGAATAACCTTA+GGG 0.517493 1_1:+34036702 Msa0019540:five_prime_UTR
TTTGCAGATGCCAACACTAC+CGG 0.517868 1_1:+34038164 Msa0019540:intron
ACTTGATGCTTCTCCAGGCA+AGG 0.518546 1_1:-34038014 None:intergenic
GAACCGGATTGAATCATAGC+TGG 0.520414 1_1:-34036624 None:intergenic
CAATCAATATTATTTCCCTA+AGG 0.521353 1_1:-34036717 None:intergenic
TTCACCATGATAGATTCCCT+TGG 0.521465 1_1:-34037364 None:intergenic
GCTCTGTACAATACACCAAA+TGG 0.522929 1_1:+34036104 Msa0019540:five_prime_UTR
CGCATATGCAGGGTCCGAGA+AGG 0.524634 1_1:-34036134 None:intergenic
AGCTCCAACAACATCAAAGT+TGG 0.525332 1_1:-34037090 None:intergenic
GGTAAGTTTCGGTTTCTGAA+GGG 0.526040 1_1:+34037423 Msa0019540:five_prime_UTR
TTTGGCTCGAGGGGTAACCT+TGG 0.526351 1_1:+34035998 Msa0019540:five_prime_UTR
TTGTTCGTTTGGCTCGTGTT+TGG 0.527752 1_1:+34036186 Msa0019540:five_prime_UTR
ACGAGCCAAACGAACAAACA+AGG 0.528651 1_1:-34036180 None:intergenic
GGCATCTTCTCCGGTAGTGT+TGG 0.528892 1_1:-34038174 None:intergenic
ACTCCCAAGGGAATCTATCA+TGG 0.529688 1_1:+34037360 Msa0019540:five_prime_UTR
AATAGGATTACTGGTTCGAC+TGG 0.531719 1_1:+34036472 Msa0019540:five_prime_UTR
CATTTGTCTCGCACCGAAGG+TGG 0.532882 1_1:+34041502 Msa0019540:three_prime_UTR
CCGGAGAAGATGCCGAATCA+GGG 0.533742 1_1:+34038183 Msa0019540:CDS
AAGCAGCAGTACCATTGTAA+TGG 0.540337 1_1:+34039453 Msa0019540:CDS
TCTCACTTAATTTGGTGTCA+AGG 0.540340 1_1:+34041201 Msa0019540:three_prime_UTR
AGAAAGTGAAGATGAACAAA+CGG 0.540710 1_1:-34035738 None:intergenic
TTTAGTCACCCCATCAAGCC+AGG 0.541385 1_1:-34037784 None:intergenic
CAGTACCATTGTAATGGCTG+TGG 0.543474 1_1:+34039459 Msa0019540:CDS
ATCATGGTGAAGACTATACT+GGG 0.544682 1_1:+34037376 Msa0019540:five_prime_UTR
TGCAATGACTGCGGAAACAC+CGG 0.544929 1_1:+34041067 Msa0019540:CDS
ACCTGTTTGACTTGGTGTCG+GGG 0.548265 1_1:-34038468 None:intergenic
TTATTATTTAGATTATACGT+TGG 0.548793 1_1:+34035857 Msa0019540:five_prime_UTR
TTGGAGCCATCTCCAACTGC+AGG 0.549096 1_1:+34036946 Msa0019540:five_prime_UTR
GGTGGTTTAATCTAGTTTGG+AGG 0.549161 1_1:+34041520 Msa0019540:three_prime_UTR
GTAAGTTTCGGTTTCTGAAG+GGG 0.550680 1_1:+34037424 Msa0019540:five_prime_UTR
TGTCATTAGTTTACTCCCAA+GGG 0.551747 1_1:+34037348 Msa0019540:five_prime_UTR
ATTAACTGTGGTGTTTGTAT+GGG 0.551930 1_1:+34039226 Msa0019540:CDS
TTTACCCTAGAAGAGTTAGC+TGG 0.553040 1_1:+34041601 Msa0019540:three_prime_UTR
GAATATGCAAAATTCAATCA+AGG 0.553376 1_1:-34035890 None:intergenic
AAAATGGAACCGAACATGAC+CGG 0.555237 1_1:-34041086 None:intergenic
ATGTTTCCGGGAGTTCTTCG+AGG 0.555720 1_1:+34037585 Msa0019540:five_prime_UTR
ACACCTGTTTGACTTGGTGT+CGG 0.555973 1_1:-34038470 None:intergenic
CATCAATATAATCATATGTG+TGG 0.559013 1_1:-34036354 None:intergenic
AGTCGTTCTGTGATATGTCA+AGG 0.560608 1_1:+34040602 Msa0019540:CDS
CTTACCAGCTAACTCTTCTA+GGG 0.562171 1_1:-34041605 None:intergenic
TATCATTTGTCTCGCACCGA+AGG 0.564689 1_1:+34041499 Msa0019540:three_prime_UTR
GAGTTTGCATTGTAACCTCA+AGG 0.567257 1_1:+34041627 Msa0019540:three_prime_UTR
TTTGGCTCGTGTTTGGTACG+TGG 0.567499 1_1:+34036193 Msa0019540:five_prime_UTR
GTTTGTTCGTTTGGCTCGAG+GGG 0.574057 1_1:+34035989 Msa0019540:five_prime_UTR
GTCCTTGAAGATAGATTGAT+CGG 0.575880 1_1:+34035689 Msa0019540:five_prime_UTR
TGTTTCCGCAGTCATTGCAC+AGG 0.575987 1_1:-34041063 None:intergenic
TTTGCAAGATAAAGGATACA+TGG 0.576830 1_1:+34038057 Msa0019540:CDS
ACGAACAAACAAGGGCAACC+CGG 0.578353 1_1:-34036171 None:intergenic
ACTTTGTGCAACTGAACAAG+AGG 0.578809 1_1:+34038624 Msa0019540:CDS
TGTTATAGGAGTTGCAGTTG+AGG 0.581082 1_1:-34041123 None:intergenic
TTCTTCCATTGTAACAAGTG+TGG 0.583354 1_1:+34039898 Msa0019540:CDS
CATATGCAGGGTCCGAGAAG+GGG 0.583941 1_1:-34036132 None:intergenic
TTGTTGGAGCTTCGTATGGG+TGG 0.585451 1_1:+34037102 Msa0019540:five_prime_UTR
CTGTACAATACACCAAATGG+TGG 0.587131 1_1:+34036107 Msa0019540:five_prime_UTR
ATGTTGTTGGAGCTTCGTAT+GGG 0.587954 1_1:+34037099 Msa0019540:five_prime_UTR
ATCAATATAATCATATGTGT+GGG 0.589590 1_1:-34036353 None:intergenic
GTCGTTCTGTGATATGTCAA+GGG 0.590443 1_1:+34040603 Msa0019540:CDS
TGCAACTGCAGAAATACAGA+TGG 0.592512 1_1:-34037000 None:intergenic
TGCGGGAGCTCTAGTGCACC+GGG 0.594741 1_1:+34036153 Msa0019540:five_prime_UTR
CTTTCGCAGGGCATCCGAAG+TGG 0.599862 1_1:+34036826 Msa0019540:five_prime_UTR
GCTTACCACACTTGTTACAA+TGG 0.603038 1_1:-34039903 None:intergenic
TCCTCGGATTAGGTGTGTCG+TGG 0.605303 1_1:+34036305 Msa0019540:five_prime_UTR
ATTGTTGTCATGTGACTGAA+AGG 0.605967 1_1:+34036034 Msa0019540:five_prime_UTR
GTTGAATTATATCAAACTCG+AGG 0.606130 1_1:+34036505 Msa0019540:five_prime_UTR
AATGAGGCACAAATACTCCT+CGG 0.610914 1_1:+34036289 Msa0019540:five_prime_UTR
CGAGCCAAACGAACAAACAA+GGG 0.611141 1_1:-34036179 None:intergenic
GGTGTTTACCTGGCTTGATG+GGG 0.611927 1_1:+34037776 Msa0019540:five_prime_UTR
ATCAACTATATCTAGAAGCA+GGG 0.612626 1_1:-34037874 None:intergenic
ATGAAATGAGAGAACATCAC+CGG 0.612682 1_1:+34040471 Msa0019540:CDS
TTATGGATTGTATGTCCGCA+CGG 0.613243 1_1:-34040437 None:intergenic
AGCTTGTATCATGGGTGATG+TGG 0.616132 1_1:+34037913 Msa0019540:exon
ATAATCATATGTGTGGGTGT+CGG 0.617073 1_1:-34036347 None:intergenic
CTAGAGCTCCCGCATATGCA+GGG 0.618468 1_1:-34036144 None:intergenic
GTATTTGCATTCAGACACAA+TGG 0.619437 1_1:+34041453 Msa0019540:three_prime_UTR
GATTTGAGCTTAATACCTTG+AGG 0.620615 1_1:-34041642 None:intergenic
GGGGTGATTATATATATACA+TGG 0.623938 1_1:+34037396 Msa0019540:five_prime_UTR
TTGCCGCCATTGTCACAATG+AGG 0.627282 1_1:+34038231 Msa0019540:CDS
TATTCCATTGTGTCTAAGCG+GGG 0.629234 1_1:-34041277 None:intergenic
TTGCCTCATTGTGACAATGG+CGG 0.629473 1_1:-34038234 None:intergenic
AGGTAGAAAAGTCTTTCGCA+GGG 0.631256 1_1:+34036814 Msa0019540:five_prime_UTR
AGAACGACTTCGAACATAGA+GGG 0.631596 1_1:-34040588 None:intergenic
CTAATAACTACGTCACCTGA+AGG 0.633698 1_1:-34037316 None:intergenic
CAGCCAAATTGTATTAACTG+TGG 0.635426 1_1:+34039214 Msa0019540:CDS
ATAATCCTAAAACTTCTACA+AGG 0.635838 1_1:-34037811 None:intergenic
CAGACGAGAGGATGAGCTAG+TGG 0.638322 1_1:+34041151 Msa0019540:exon
TTCATGTCTCGCAGTCACCA+TGG 0.638325 1_1:+34036583 Msa0019540:five_prime_UTR
GCAACTGCGTAGTTCCACTT+CGG 0.639955 1_1:-34036840 None:intergenic
TTACAATTATGAATACTCAA+CGG 0.646084 1_1:-34036541 None:intergenic
AATCACCATTACTCCAAGAG+AGG 0.646508 1_1:-34037677 None:intergenic
GCAACTGCAGAAATACAGAT+GGG 0.651069 1_1:-34036999 None:intergenic
TCAACCCCGCTTAGACACAA+TGG 0.654486 1_1:+34041273 Msa0019540:three_prime_UTR
TGCAGAAATACAGATGGGCA+AGG 0.655762 1_1:-34036994 None:intergenic
TGTACAATACACCAAATGGT+GGG 0.658933 1_1:+34036108 Msa0019540:five_prime_UTR
ATTATTCCATTGTGTCTAAG+CGG 0.660087 1_1:-34041279 None:intergenic
GAAATTGTTGTTATGCCGTG+CGG 0.662393 1_1:+34040422 Msa0019540:CDS
ATAACCTCTTGTGTAAAACA+GGG 0.680555 1_1:+34036077 Msa0019540:five_prime_UTR
GAGTTTGATATAATTCAACA+GGG 0.682620 1_1:-34036501 None:intergenic
CTTGAAGATAGATTGATCGG+AGG 0.683919 1_1:+34035692 Msa0019540:five_prime_UTR
ACCACGACACACCTAATCCG+AGG 0.684236 1_1:-34036306 None:intergenic
TATAACACACGACAGACGAG+AGG 0.688676 1_1:+34041139 Msa0019540:CDS
AAATTCCACAGCCATTACAA+TGG 0.701862 1_1:-34039464 None:intergenic
ATTGATATGAGTGTGTACCA+AGG 0.705976 1_1:+34036246 Msa0019540:five_prime_UTR
AGTTTGATATAATTCAACAG+GGG 0.721442 1_1:-34036500 None:intergenic
TGGATCCTGTGCAATGACTG+CGG 0.725144 1_1:+34041058 Msa0019540:CDS
TGCTGGTTACAGTTGCTCTG+CGG 0.730508 1_1:+34037725 Msa0019540:five_prime_UTR
TCATGGTGAAGACTATACTG+GGG 0.741305 1_1:+34037377 Msa0019540:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGACTAATTTTATAAA+AGG - chr1_1:34038145-34038164 None:intergenic 10.0%
!!! TTGTGATATTTTTAAATTTT+TGG + chr1_1:34038373-34038392 Msa0019540:intron 10.0%
!!! TGTGATATTTTTAAATTTTT+GGG + chr1_1:34038374-34038393 Msa0019540:intron 10.0%
!! AAATTATTCTATTAGAATTA+AGG - chr1_1:34038577-34038596 None:intergenic 10.0%
!! TTATTATTTAGATTATACGT+TGG + chr1_1:34035857-34035876 Msa0019540:five_prime_UTR 15.0%
!! ATTATATATATACATGGATT+TGG + chr1_1:34037402-34037421 Msa0019540:five_prime_UTR 15.0%
!!! GTGATATTTTTAAATTTTTG+GGG + chr1_1:34038375-34038394 Msa0019540:intron 15.0%
!! TACTGATATTGAATTTATAA+AGG + chr1_1:34038693-34038712 Msa0019540:intron 15.0%
!! AAAAAATAGTATATAATCAC+AGG - chr1_1:34038788-34038807 None:intergenic 15.0%
!!! GCAAATGATAAATATTTTAT+GGG - chr1_1:34039657-34039676 None:intergenic 15.0%
!!! TGCAAATGATAAATATTTTA+TGG - chr1_1:34039658-34039677 None:intergenic 15.0%
!! ATTATATTCATAACTATTAC+AGG - chr1_1:34040191-34040210 None:intergenic 15.0%
!! ATAGTTATGAATATAATTCA+CGG + chr1_1:34040194-34040213 Msa0019540:intron 15.0%
!! AGTATAAATAATAAACAGTA+AGG - chr1_1:34040711-34040730 None:intergenic 15.0%
!!! ATTAGTTTTTTTTCTATTGT+AGG + chr1_1:34041562-34041581 Msa0019540:three_prime_UTR 15.0%
!! AATATAAAAACGATTTGACA+AGG - chr1_1:34035771-34035790 None:intergenic 20.0%
!! ATCAATATAATCATATGTGT+GGG - chr1_1:34036356-34036375 None:intergenic 20.0%
!! TTTAATAATGTTCATTGCTT+AGG + chr1_1:34036437-34036456 Msa0019540:five_prime_UTR 20.0%
!! TTACAATTATGAATACTCAA+CGG - chr1_1:34036544-34036563 None:intergenic 20.0%
!! GAGTATTCATAATTGTAATT+AGG + chr1_1:34036546-34036565 Msa0019540:five_prime_UTR 20.0%
!! ATGAATGATTATATCAGTTT+AGG + chr1_1:34036787-34036806 Msa0019540:five_prime_UTR 20.0%
!!! ATTATATCAGTTTAGGTTTT+AGG + chr1_1:34036794-34036813 Msa0019540:five_prime_UTR 20.0%
!! TGATTTATTGCTTTCAAAAT+AGG + chr1_1:34037541-34037560 Msa0019540:intron 20.0%
!! TCAATGCTTATTGTAATTTA+TGG + chr1_1:34037622-34037641 Msa0019540:five_prime_UTR 20.0%
!! AAATTACGCTTATGAAAAAT+AGG - chr1_1:34038278-34038297 None:intergenic 20.0%
!! TAAAAAATAAGTAATGAGAC+CGG - chr1_1:34038317-34038336 None:intergenic 20.0%
!! ATTTGTGGATATTTCAATTA+AGG - chr1_1:34038516-34038535 None:intergenic 20.0%
!! TGATATTGAATTTATAAAGG+AGG + chr1_1:34038696-34038715 Msa0019540:intron 20.0%
!! CTTACATGTATATAATCATA+GGG - chr1_1:34038913-34038932 None:intergenic 20.0%
!! CATGCATAAAGAAAATAAAA+TGG + chr1_1:34038935-34038954 Msa0019540:intron 20.0%
!! TAACAAATTGCATCATTATT+AGG + chr1_1:34039528-34039547 Msa0019540:intron 20.0%
!! AACAAATTGCATCATTATTA+GGG + chr1_1:34039529-34039548 Msa0019540:intron 20.0%
!! AAAAACAAAATGAAACAAAG+GGG - chr1_1:34039580-34039599 None:intergenic 20.0%
!! GAAAAACAAAATGAAACAAA+GGG - chr1_1:34039581-34039600 None:intergenic 20.0%
!! TGAAAAACAAAATGAAACAA+AGG - chr1_1:34039582-34039601 None:intergenic 20.0%
!!! TGATAAATATTTTATGGGAT+CGG - chr1_1:34039652-34039671 None:intergenic 20.0%
!! ATATCAAAATCAATCAGTTA+AGG - chr1_1:34039848-34039867 None:intergenic 20.0%
!!! CTGATACAATAATTTTTTAC+TGG - chr1_1:34040247-34040266 None:intergenic 20.0%
!!! ATGCTAGAGTTATTTTAAAT+TGG + chr1_1:34040304-34040323 Msa0019540:intron 20.0%
!! ATAAGAACAATATTCAGAAA+GGG - chr1_1:34040536-34040555 None:intergenic 20.0%
!! AATAAGAACAATATTCAGAA+AGG - chr1_1:34040537-34040556 None:intergenic 20.0%
!! TTATTGACATCTTAAATTCA+AGG + chr1_1:34041007-34041026 Msa0019540:intron 20.0%
!! TATTGACATCTTAAATTCAA+GGG + chr1_1:34041008-34041027 Msa0019540:intron 20.0%
!!! TTCTTTTGTTTAGTTTAGTT+TGG + chr1_1:34041329-34041348 Msa0019540:three_prime_UTR 20.0%
! GAATATGCAAAATTCAATCA+AGG - chr1_1:34035893-34035912 None:intergenic 25.0%
! ATTCATTGCCTTAAAACAAA+AGG - chr1_1:34036272-34036291 None:intergenic 25.0%
! CATCAATATAATCATATGTG+TGG - chr1_1:34036357-34036376 None:intergenic 25.0%
! AGTTTGATATAATTCAACAG+GGG - chr1_1:34036503-34036522 None:intergenic 25.0%
! GAGTTTGATATAATTCAACA+GGG - chr1_1:34036504-34036523 None:intergenic 25.0%
! CAATCAATATTATTTCCCTA+AGG - chr1_1:34036720-34036739 None:intergenic 25.0%
! TTATTGCTTTCAAAATAGGT+TGG + chr1_1:34037545-34037564 Msa0019540:intron 25.0%
!!! AAATAGGTTGGAATTTCTTT+TGG + chr1_1:34037557-34037576 Msa0019540:intron 25.0%
!! ATAATATCATTTTGTGTTGC+TGG + chr1_1:34037708-34037727 Msa0019540:five_prime_UTR 25.0%
! ATAATCCTAAAACTTCTACA+AGG - chr1_1:34037814-34037833 None:intergenic 25.0%
!! ACAAATGATTTGCAAGATAA+AGG + chr1_1:34038049-34038068 Msa0019540:CDS 25.0%
! ATAAAGGATACATGGAATAT+GGG + chr1_1:34038065-34038084 Msa0019540:CDS 25.0%
!! ACTAATTTTATAAAAGGAGC+AGG - chr1_1:34038139-34038158 None:intergenic 25.0%
!! TAATTTTGTGCACTTTATTC+AGG + chr1_1:34038591-34038610 Msa0019540:intron 25.0%
! GCTTACATGTATATAATCAT+AGG - chr1_1:34038914-34038933 None:intergenic 25.0%
! TCATTGAGAAAAACAAAGAT+TGG - chr1_1:34039090-34039109 None:intergenic 25.0%
! TATGCAACATTAGAACAAAA+AGG - chr1_1:34039319-34039338 None:intergenic 25.0%
! AGATATCTGCATCATATAAA+AGG - chr1_1:34039433-34039452 None:intergenic 25.0%
! AAAACAAAATGAAACAAAGG+GGG - chr1_1:34039579-34039598 None:intergenic 25.0%
! CAAATAAATCCCTAAAAACA+GGG - chr1_1:34039713-34039732 None:intergenic 25.0%
!! GGTAACATTTACAATTTTCA+TGG + chr1_1:34040104-34040123 Msa0019540:intron 25.0%
!!! AAGTCTGCTTTTTATATTTC+TGG + chr1_1:34040342-34040361 Msa0019540:intron 25.0%
!! TTTCATCTATACAGCTTTTA+TGG - chr1_1:34040457-34040476 None:intergenic 25.0%
! TAATAAACAGTAAGGAAAAG+AGG - chr1_1:34040703-34040722 None:intergenic 25.0%
!!! GGTATTTATTTTTGTTCTGT+TGG + chr1_1:34040823-34040842 Msa0019540:intron 25.0%
!!! TCTGTTGGTTCATTAATTTT+TGG + chr1_1:34040838-34040857 Msa0019540:intron 25.0%
! ATTGACATCTTAAATTCAAG+GGG + chr1_1:34041009-34041028 Msa0019540:intron 25.0%
! ATGGAAACTTTCAATCATAA+AGG - chr1_1:34041177-34041196 None:intergenic 25.0%
!!! TTTTGTTTAGTTTAGTTTGG+AGG + chr1_1:34041332-34041351 Msa0019540:three_prime_UTR 25.0%
! AAGATAAAAGAAGACTTAGA+TGG - chr1_1:34041371-34041390 None:intergenic 25.0%
! AAAATTGAAAAACTGAACAC+GGG - chr1_1:34041425-34041444 None:intergenic 25.0%
! GAAAATTGAAAAACTGAACA+CGG - chr1_1:34041426-34041445 None:intergenic 25.0%
AGAAAGTGAAGATGAACAAA+CGG - chr1_1:34035741-34035760 None:intergenic 30.0%
AAACGATTTGACAAGGAAAA+TGG - chr1_1:34035764-34035783 None:intergenic 30.0%
!! TTCGTTTTTGTTTGTTCGTT+TGG + chr1_1:34035980-34035999 Msa0019540:five_prime_UTR 30.0%
!! TTACACAAGAGGTTATTTCT+AGG - chr1_1:34036073-34036092 None:intergenic 30.0%
AATAACCTCTTGTGTAAAAC+AGG + chr1_1:34036076-34036095 Msa0019540:five_prime_UTR 30.0%
ATAACCTCTTGTGTAAAACA+GGG + chr1_1:34036077-34036096 Msa0019540:five_prime_UTR 30.0%
!!! TTGTTTTAAGGCAATGAATG+AGG + chr1_1:34036273-34036292 Msa0019540:five_prime_UTR 30.0%
! TTAGGTTGTAACCCTTTAAT+AGG + chr1_1:34036455-34036474 Msa0019540:five_prime_UTR 30.0%
TAACCCTTTAATAGGATTAC+TGG + chr1_1:34036463-34036482 Msa0019540:five_prime_UTR 30.0%
GAACCAGTAATCCTATTAAA+GGG - chr1_1:34036469-34036488 None:intergenic 30.0%
CGAGTTTGATATAATTCAAC+AGG - chr1_1:34036505-34036524 None:intergenic 30.0%
GTTGAATTATATCAAACTCG+AGG + chr1_1:34036505-34036524 Msa0019540:five_prime_UTR 30.0%
TCAAAACACAAACCATAATC+AGG - chr1_1:34036649-34036668 None:intergenic 30.0%
TTACATAGCTGAATAACCTT+AGG + chr1_1:34036701-34036720 Msa0019540:five_prime_UTR 30.0%
TACATAGCTGAATAACCTTA+GGG + chr1_1:34036702-34036721 Msa0019540:five_prime_UTR 30.0%
! TATTTGAGAGCGAAACTTTT+AGG + chr1_1:34036741-34036760 Msa0019540:five_prime_UTR 30.0%
! AGATGTGACTCTGTAATTTT+TGG + chr1_1:34036880-34036899 Msa0019540:five_prime_UTR 30.0%
CAAATCTGAAAGAAAATTGC+TGG - chr1_1:34036929-34036948 None:intergenic 30.0%
! CAGCAATTTTCTTTCAGATT+TGG + chr1_1:34036927-34036946 Msa0019540:five_prime_UTR 30.0%
!!! CTGTCTTATTTTTTCTAGCA+TGG + chr1_1:34037050-34037069 Msa0019540:five_prime_UTR 30.0%
TGTCTGACAAAGAAACAAAA+AGG - chr1_1:34037133-34037152 None:intergenic 30.0%
! GAATGGATTTGATACTAGTT+TGG + chr1_1:34037160-34037179 Msa0019540:five_prime_UTR 30.0%
CTTCCAACAAAGACAAAAAA+CGG - chr1_1:34037240-34037259 None:intergenic 30.0%
CAAATTGAGGTTAAACAAGA+AGG - chr1_1:34037279-34037298 None:intergenic 30.0%
! CTTCTTGTTTAACCTCAATT+TGG + chr1_1:34037277-34037296 Msa0019540:five_prime_UTR 30.0%
GGGGTGATTATATATATACA+TGG + chr1_1:34037396-34037415 Msa0019540:five_prime_UTR 30.0%
! TACATGGATTTGGTAAGTTT+CGG + chr1_1:34037412-34037431 Msa0019540:five_prime_UTR 30.0%
CAAGAAATCAACAATGCATT+TGG + chr1_1:34037755-34037774 Msa0019540:five_prime_UTR 30.0%
! ATATGCCTTGTAGAAGTTTT+AGG + chr1_1:34037806-34037825 Msa0019540:five_prime_UTR 30.0%
! CTAAATTTGTTCGTAAATGC+AGG + chr1_1:34037836-34037855 Msa0019540:five_prime_UTR 30.0%
ATCAACTATATCTAGAAGCA+GGG - chr1_1:34037877-34037896 None:intergenic 30.0%
TATCAACTATATCTAGAAGC+AGG - chr1_1:34037878-34037897 None:intergenic 30.0%
! TTTGAAGATAGCTTGTATCA+TGG + chr1_1:34037904-34037923 Msa0019540:exon 30.0%
! TTGAAGATAGCTTGTATCAT+GGG + chr1_1:34037905-34037924 Msa0019540:exon 30.0%
TAATCCTCCAAAATCAAATC+TGG + chr1_1:34037988-34038007 Msa0019540:CDS 30.0%
!! AAGGATTCCAGATTTGATTT+TGG - chr1_1:34037998-34038017 None:intergenic 30.0%
TTTGCAAGATAAAGGATACA+TGG + chr1_1:34038057-34038076 Msa0019540:CDS 30.0%
GATAAAGGATACATGGAATA+TGG + chr1_1:34038064-34038083 Msa0019540:CDS 30.0%
TTTGTTCATATGCTTCTTTC+TGG + chr1_1:34038094-34038113 Msa0019540:intron 30.0%
TCAAAAATCTCATTGCAACA+AGG - chr1_1:34038211-34038230 None:intergenic 30.0%
ACGCTTATGAAAAATAGGTA+AGG - chr1_1:34038273-34038292 None:intergenic 30.0%
TTTGTTTCATATCATTCAGC+CGG + chr1_1:34038295-34038314 Msa0019540:intron 30.0%
ATAAAAACACCTGTTTGACT+TGG - chr1_1:34038479-34038498 None:intergenic 30.0%
!! AACAGGTGTTTTTATCAACT+TGG + chr1_1:34038484-34038503 Msa0019540:intron 30.0%
!! ACAGGTGTTTTTATCAACTT+GGG + chr1_1:34038485-34038504 Msa0019540:intron 30.0%
!! TGATGCTTTTTACTACTTTC+AGG + chr1_1:34039189-34039208 Msa0019540:intron 30.0%
ACACCACAGTTAATACAATT+TGG - chr1_1:34039220-34039239 None:intergenic 30.0%
TATTAACTGTGGTGTTTGTA+TGG + chr1_1:34039225-34039244 Msa0019540:CDS 30.0%
ATTAACTGTGGTGTTTGTAT+GGG + chr1_1:34039226-34039245 Msa0019540:CDS 30.0%
ATGATGTGAGTATTAATCCT+AGG + chr1_1:34039284-34039303 Msa0019540:intron 30.0%
CTGCATCATATAAAAGGAAA+CGG - chr1_1:34039427-34039446 None:intergenic 30.0%
!! ATTTGTTATGTTCCAGACTT+AGG - chr1_1:34039516-34039535 None:intergenic 30.0%
AATTGCATCATTATTAGGGA+TGG + chr1_1:34039533-34039552 Msa0019540:intron 30.0%
!!! GATGGTAACATGTTTTAATG+CGG + chr1_1:34039551-34039570 Msa0019540:intron 30.0%
! AAATATTTTATGGGATCGGA+GGG - chr1_1:34039648-34039667 None:intergenic 30.0%
! TAAATATTTTATGGGATCGG+AGG - chr1_1:34039649-34039668 None:intergenic 30.0%
!!! TCAACTTTACCCTGTTTTTA+GGG + chr1_1:34039701-34039720 Msa0019540:intron 30.0%
CCAAATAAATCCCTAAAAAC+AGG - chr1_1:34039714-34039733 None:intergenic 30.0%
!!! CCTGTTTTTAGGGATTTATT+TGG + chr1_1:34039711-34039730 Msa0019540:intron 30.0%
CAAAATAGCAAGTACAAACA+TGG - chr1_1:34039755-34039774 None:intergenic 30.0%
AAAATCAATCAGTTAAGGCA+AGG - chr1_1:34039843-34039862 None:intergenic 30.0%
!!! TGATATTTTTTGCACAGAAC+TGG + chr1_1:34039862-34039881 Msa0019540:intron 30.0%
CGTTTGACATTCATGATTAT+AGG + chr1_1:34040000-34040019 Msa0019540:intron 30.0%
!!! TCTGCTTTTTATATTTCTGG+AGG + chr1_1:34040345-34040364 Msa0019540:intron 30.0%
CTTGTATTTGATTGTATACC+AGG + chr1_1:34040557-34040576 Msa0019540:intron 30.0%
CTATACTTGATATGAATGAC+AGG - chr1_1:34040873-34040892 None:intergenic 30.0%
! TTCATGTCTTATTGTTGCTT+TGG + chr1_1:34040909-34040928 Msa0019540:intron 30.0%
CCAAATTAAGTGAGATGAAA+TGG - chr1_1:34041196-34041215 None:intergenic 30.0%
CCATTTCATCTCACTTAATT+TGG + chr1_1:34041193-34041212 Msa0019540:three_prime_UTR 30.0%
! CTCAATGCTTTTCTCTTTTT+TGG + chr1_1:34041232-34041251 Msa0019540:three_prime_UTR 30.0%
!!! TTTTCTCTTTTTTGGCTACA+AGG + chr1_1:34041240-34041259 Msa0019540:three_prime_UTR 30.0%
ATTATTCCATTGTGTCTAAG+CGG - chr1_1:34041282-34041301 None:intergenic 30.0%
AAACTAGATTAAACCACCTT+CGG - chr1_1:34041518-34041537 None:intergenic 30.0%
GTCCTTGAAGATAGATTGAT+CGG + chr1_1:34035689-34035708 Msa0019540:five_prime_UTR 35.0%
ATTGTTGTCATGTGACTGAA+AGG + chr1_1:34036034-34036053 Msa0019540:five_prime_UTR 35.0%
TGTACAATACACCAAATGGT+GGG + chr1_1:34036108-34036127 Msa0019540:five_prime_UTR 35.0%
ATTGATATGAGTGTGTACCA+AGG + chr1_1:34036246-34036265 Msa0019540:five_prime_UTR 35.0%
!!! TACCAAGGCCTTTTGTTTTA+AGG + chr1_1:34036261-34036280 Msa0019540:five_prime_UTR 35.0%
ATAATCATATGTGTGGGTGT+CGG - chr1_1:34036350-34036369 None:intergenic 35.0%
CGAACCAGTAATCCTATTAA+AGG - chr1_1:34036470-34036489 None:intergenic 35.0%
! AAGAAGTTTTGCGAAAACCA+TGG - chr1_1:34036603-34036622 None:intergenic 35.0%
TTTCCAGCTATGATTCAATC+CGG + chr1_1:34036621-34036640 Msa0019540:five_prime_UTR 35.0%
!! TTTTAGGAGACTCAAGTAGA+GGG + chr1_1:34036757-34036776 Msa0019540:five_prime_UTR 35.0%
!! TGTGACTCTGTAATTTTTGG+AGG + chr1_1:34036883-34036902 Msa0019540:five_prime_UTR 35.0%
!! GTGACTCTGTAATTTTTGGA+GGG + chr1_1:34036884-34036903 Msa0019540:five_prime_UTR 35.0%
AAAAAATTGCTTCCTGCAGT+TGG - chr1_1:34036961-34036980 None:intergenic 35.0%
TGGAAGTTGGAAGGAAAAAA+CGG - chr1_1:34037216-34037235 None:intergenic 35.0%
CAACAAAGACAAAAAACGGT+TGG - chr1_1:34037236-34037255 None:intergenic 35.0%
!!! CAACCGTTTTTTGTCTTTGT+TGG + chr1_1:34037234-34037253 Msa0019540:five_prime_UTR 35.0%
! AAACAAGAAGGTTTTCAGCA+GGG - chr1_1:34037267-34037286 None:intergenic 35.0%
! TAAACAAGAAGGTTTTCAGC+AGG - chr1_1:34037268-34037287 None:intergenic 35.0%
! TGTCATTAGTTTACTCCCAA+GGG + chr1_1:34037348-34037367 Msa0019540:five_prime_UTR 35.0%
TATCATGGTGAAGACTATAC+TGG + chr1_1:34037375-34037394 Msa0019540:five_prime_UTR 35.0%
ATCATGGTGAAGACTATACT+GGG + chr1_1:34037376-34037395 Msa0019540:five_prime_UTR 35.0%
CAATGCTGAACAACACTTTA+TGG + chr1_1:34037448-34037467 Msa0019540:five_prime_UTR 35.0%
!!! GTGTTGATTTTGTCCACAAA+GGG - chr1_1:34037482-34037501 None:intergenic 35.0%
!!! TGTGTTGATTTTGTCCACAA+AGG - chr1_1:34037483-34037502 None:intergenic 35.0%
! TCTTTTGGTAGACATGTTTC+CGG + chr1_1:34037572-34037591 Msa0019540:five_prime_UTR 35.0%
!! GATTCCAGATTTGATTTTGG+AGG - chr1_1:34037995-34038014 None:intergenic 35.0%
!! CAGGTGTTTTTATCAACTTG+GGG + chr1_1:34038486-34038505 Msa0019540:intron 35.0%
! GGAAAAGGTGCAAAAATTTG+TGG - chr1_1:34038531-34038550 None:intergenic 35.0%
!!! CACCTTTTCCTGTTATTTCA+TGG + chr1_1:34038541-34038560 Msa0019540:intron 35.0%
GTCCATGAAATAACAGGAAA+AGG - chr1_1:34038546-34038565 None:intergenic 35.0%
!! TTCCTGTTATTTCATGGACA+AGG + chr1_1:34038547-34038566 Msa0019540:intron 35.0%
TACCTTGTCCATGAAATAAC+AGG - chr1_1:34038552-34038571 None:intergenic 35.0%
GAATATAATACATCCCCACT+AGG + chr1_1:34038848-34038867 Msa0019540:intron 35.0%
!! ATATAATCATAGGGAGCACT+AGG - chr1_1:34038904-34038923 None:intergenic 35.0%
CTGTTAAGCTTATTACTGTC+TGG + chr1_1:34038963-34038982 Msa0019540:intron 35.0%
TTAAGCTTATTACTGTCTGG+AGG + chr1_1:34038966-34038985 Msa0019540:intron 35.0%
CAGCCAAATTGTATTAACTG+TGG + chr1_1:34039214-34039233 Msa0019540:CDS 35.0%
CAAAAAGGAATCTCATTCCT+AGG - chr1_1:34039304-34039323 None:intergenic 35.0%
AAATTCCACAGCCATTACAA+TGG - chr1_1:34039467-34039486 None:intergenic 35.0%
GCAGGTATGAAATGATAATC+TGG + chr1_1:34039487-34039506 Msa0019540:intron 35.0%
! ATAATCTGGTTTCCTAAGTC+TGG + chr1_1:34039501-34039520 Msa0019540:intron 35.0%
!! CTCAACTTTACCCTGTTTTT+AGG + chr1_1:34039700-34039719 Msa0019540:intron 35.0%
!!! TATTTTTTGCACAGAACTGG+TGG + chr1_1:34039865-34039884 Msa0019540:intron 35.0%
TTCTTCCATTGTAACAAGTG+TGG + chr1_1:34039898-34039917 Msa0019540:CDS 35.0%
AAATGTTACCTCGAAACACA+CGG - chr1_1:34040094-34040113 None:intergenic 35.0%
TCATGGTTTAGAAACAGCTT+AGG + chr1_1:34040121-34040140 Msa0019540:intron 35.0%
ATGAAATGAGAGAACATCAC+CGG + chr1_1:34040471-34040490 Msa0019540:CDS 35.0%
GAACAATATTCAGAAAGGGA+TGG - chr1_1:34040532-34040551 None:intergenic 35.0%
CGATATGCACATGTATGTAT+TGG + chr1_1:34040782-34040801 Msa0019540:intron 35.0%
TGGATAGAACACTAAGAACT+AGG + chr1_1:34040802-34040821 Msa0019540:intron 35.0%
ACTTGATATGAATGACAGGT+AGG - chr1_1:34040869-34040888 None:intergenic 35.0%
!! ATGTCTTATTGTTGCTTTGG+AGG + chr1_1:34040912-34040931 Msa0019540:intron 35.0%
TCAATGCATATTGAAGGAGA+AGG - chr1_1:34040964-34040983 None:intergenic 35.0%
TGACTCTCAATGCATATTGA+AGG - chr1_1:34040970-34040989 None:intergenic 35.0%
CATTGAGAGTCAGTTATTTG+TGG + chr1_1:34040978-34040997 Msa0019540:intron 35.0%
!! TCTCACTTAATTTGGTGTCA+AGG + chr1_1:34041201-34041220 Msa0019540:three_prime_UTR 35.0%
TTATTCCATTGTGTCTAAGC+GGG - chr1_1:34041281-34041300 None:intergenic 35.0%
!! TGTTTAGTTTAGTTTGGAGG+TGG + chr1_1:34041335-34041354 Msa0019540:three_prime_UTR 35.0%
GTATTTGCATTCAGACACAA+TGG + chr1_1:34041453-34041472 Msa0019540:three_prime_UTR 35.0%
GAAGGTGGTTTAATCTAGTT+TGG + chr1_1:34041517-34041536 Msa0019540:three_prime_UTR 35.0%
CTCCGATCAATCTATCTTCA+AGG - chr1_1:34035694-34035713 None:intergenic 40.0%
CTTGAAGATAGATTGATCGG+AGG + chr1_1:34035692-34035711 Msa0019540:five_prime_UTR 40.0%
ACGGCGATTGAATTGATGTT+GGG - chr1_1:34035722-34035741 None:intergenic 40.0%
AACGGCGATTGAATTGATGT+TGG - chr1_1:34035723-34035742 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr1_1:34036084-34036103 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr1_1:34036082-34036101 Msa0019540:five_prime_UTR 40.0%
GCTCTGTACAATACACCAAA+TGG + chr1_1:34036104-34036123 Msa0019540:five_prime_UTR 40.0%
CTGTACAATACACCAAATGG+TGG + chr1_1:34036107-34036126 Msa0019540:five_prime_UTR 40.0%
!! GTACGTGGCAATTGATTTTG+CGG + chr1_1:34036208-34036227 Msa0019540:five_prime_UTR 40.0%
!! GCAATTGATTTTGCGGTACA+AGG + chr1_1:34036215-34036234 Msa0019540:five_prime_UTR 40.0%
TGCCTTAAAACAAAAGGCCT+TGG - chr1_1:34036266-34036285 None:intergenic 40.0%
AATGAGGCACAAATACTCCT+CGG + chr1_1:34036289-34036308 Msa0019540:five_prime_UTR 40.0%
TGTCTGAGTACATGCTTCAT+AGG + chr1_1:34036406-34036425 Msa0019540:five_prime_UTR 40.0%
!! AATAGGATTACTGGTTCGAC+TGG + chr1_1:34036472-34036491 Msa0019540:five_prime_UTR 40.0%
TTCAATCCGGTTCCTGATTA+TGG + chr1_1:34036634-34036653 Msa0019540:five_prime_UTR 40.0%
CACAAACCATAATCAGGAAC+CGG - chr1_1:34036643-34036662 None:intergenic 40.0%
!! CTTTTAGGAGACTCAAGTAG+AGG + chr1_1:34036756-34036775 Msa0019540:five_prime_UTR 40.0%
TAGGTAGAAAAGTCTTTCGC+AGG + chr1_1:34036813-34036832 Msa0019540:five_prime_UTR 40.0%
AGGTAGAAAAGTCTTTCGCA+GGG + chr1_1:34036814-34036833 Msa0019540:five_prime_UTR 40.0%
!! ACTCTGTAATTTTTGGAGGG+AGG + chr1_1:34036887-34036906 Msa0019540:five_prime_UTR 40.0%
! ATGGGCAAGGCATTAAAAAG+AGG - chr1_1:34036984-34037003 None:intergenic 40.0%
GCAACTGCAGAAATACAGAT+GGG - chr1_1:34037002-34037021 None:intergenic 40.0%
TGCAACTGCAGAAATACAGA+TGG - chr1_1:34037003-34037022 None:intergenic 40.0%
! TAGCATGGACTGTAAGAGTT+TGG + chr1_1:34037065-34037084 Msa0019540:five_prime_UTR 40.0%
AGCTCCAACAACATCAAAGT+TGG - chr1_1:34037093-34037112 None:intergenic 40.0%
ATGTTGTTGGAGCTTCGTAT+GGG + chr1_1:34037099-34037118 Msa0019540:five_prime_UTR 40.0%
TTGTCAGACAGCAAGAAGAA+TGG + chr1_1:34037143-34037162 Msa0019540:five_prime_UTR 40.0%
AAAAACGGTTGGAAGTTGGA+AGG - chr1_1:34037225-34037244 None:intergenic 40.0%
GACAAAAAACGGTTGGAAGT+TGG - chr1_1:34037229-34037248 None:intergenic 40.0%
CTATGTTCACTGCCAAATTG+AGG - chr1_1:34037292-34037311 None:intergenic 40.0%
AGTGAACATAGTTCACCTTC+AGG + chr1_1:34037301-34037320 Msa0019540:five_prime_UTR 40.0%
CTAATAACTACGTCACCTGA+AGG - chr1_1:34037319-34037338 None:intergenic 40.0%
! GTGTCATTAGTTTACTCCCA+AGG + chr1_1:34037347-34037366 Msa0019540:five_prime_UTR 40.0%
TCACCATGATAGATTCCCTT+GGG - chr1_1:34037366-34037385 None:intergenic 40.0%
TTCACCATGATAGATTCCCT+TGG - chr1_1:34037367-34037386 None:intergenic 40.0%
TCATGGTGAAGACTATACTG+GGG + chr1_1:34037377-34037396 Msa0019540:five_prime_UTR 40.0%
TGGTAAGTTTCGGTTTCTGA+AGG + chr1_1:34037422-34037441 Msa0019540:five_prime_UTR 40.0%
GGTAAGTTTCGGTTTCTGAA+GGG + chr1_1:34037423-34037442 Msa0019540:five_prime_UTR 40.0%
! GTAAGTTTCGGTTTCTGAAG+GGG + chr1_1:34037424-34037443 Msa0019540:five_prime_UTR 40.0%
GCTGAACAACACTTTATGGT+AGG + chr1_1:34037452-34037471 Msa0019540:intron 40.0%
! CTTTTGGTAGACATGTTTCC+GGG + chr1_1:34037573-34037592 Msa0019540:five_prime_UTR 40.0%
!! GTTTTGTTGTGTTCCTCTCT+TGG + chr1_1:34037664-34037683 Msa0019540:five_prime_UTR 40.0%
AATCACCATTACTCCAAGAG+AGG - chr1_1:34037680-34037699 None:intergenic 40.0%
TCTCTTGGAGTAATGGTGAT+TGG + chr1_1:34037679-34037698 Msa0019540:five_prime_UTR 40.0%
!! CAATGCATTTGGTGTTTACC+TGG + chr1_1:34037766-34037785 Msa0019540:five_prime_UTR 40.0%
TGGAGGATTAACGTCTTCTT+GGG - chr1_1:34037978-34037997 None:intergenic 40.0%
TTGGAGGATTAACGTCTTCT+TGG - chr1_1:34037979-34037998 None:intergenic 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - chr1_1:34038240-34038259 None:intergenic 40.0%
ACTTTGTGCAACTGAACAAG+AGG + chr1_1:34038624-34038643 Msa0019540:CDS 40.0%
ATAATACATCCCCACTAGGT+TGG + chr1_1:34038852-34038871 Msa0019540:intron 40.0%
GCAAGGAATTAGAGTCTACA+AGG - chr1_1:34038882-34038901 None:intergenic 40.0%
! ATTCCAGATGTTTTGCGCTA+TGG + chr1_1:34038991-34039010 Msa0019540:intron 40.0%
AAACAGTTTCAGCCAGCATA+TGG - chr1_1:34039060-34039079 None:intergenic 40.0%
TACACTAGTTATAGACTCGC+TGG - chr1_1:34039400-34039419 None:intergenic 40.0%
AAGCAGCAGTACCATTGTAA+TGG + chr1_1:34039453-34039472 Msa0019540:CDS 40.0%
ACAGGGTAAAGTTGAGTACT+AGG - chr1_1:34039696-34039715 None:intergenic 40.0%
ATCAGTTAAGGCAAGGCAAA+AGG - chr1_1:34039836-34039855 None:intergenic 40.0%
! GCTTACCACACTTGTTACAA+TGG - chr1_1:34039906-34039925 None:intergenic 40.0%
AATGTTACCTCGAAACACAC+GGG - chr1_1:34040093-34040112 None:intergenic 40.0%
! GAAATTGTTGTTATGCCGTG+CGG + chr1_1:34040422-34040441 Msa0019540:CDS 40.0%
! TTATGGATTGTATGTCCGCA+CGG - chr1_1:34040440-34040459 None:intergenic 40.0%
GATGGAGAAGTAAAGAGACT+AGG - chr1_1:34040514-34040533 None:intergenic 40.0%
AGAACGACTTCGAACATAGA+GGG - chr1_1:34040591-34040610 None:intergenic 40.0%
AGTCGTTCTGTGATATGTCA+AGG + chr1_1:34040602-34040621 Msa0019540:CDS 40.0%
GTCGTTCTGTGATATGTCAA+GGG + chr1_1:34040603-34040622 Msa0019540:CDS 40.0%
TCTGTGATATGTCAAGGGTT+TGG + chr1_1:34040608-34040627 Msa0019540:CDS 40.0%
CTGTGATATGTCAAGGGTTT+GGG + chr1_1:34040609-34040628 Msa0019540:CDS 40.0%
AAAATGGAACCGAACATGAC+CGG - chr1_1:34041089-34041108 None:intergenic 40.0%
! TCATGTTCGGTTCCATTTTG+TGG + chr1_1:34041090-34041109 Msa0019540:CDS 40.0%
!!! GGCATTTTAGAGCCACAAAA+TGG - chr1_1:34041105-34041124 None:intergenic 40.0%
TGTTATAGGAGTTGCAGTTG+AGG - chr1_1:34041126-34041145 None:intergenic 40.0%
TATTCCATTGTGTCTAAGCG+GGG - chr1_1:34041280-34041299 None:intergenic 40.0%
! GGTGGTTTAATCTAGTTTGG+AGG + chr1_1:34041520-34041539 Msa0019540:three_prime_UTR 40.0%
TTTACCCTAGAAGAGTTAGC+TGG + chr1_1:34041601-34041620 Msa0019540:three_prime_UTR 40.0%
CTTACCAGCTAACTCTTCTA+GGG - chr1_1:34041608-34041627 None:intergenic 40.0%
TCTTACCAGCTAACTCTTCT+AGG - chr1_1:34041609-34041628 None:intergenic 40.0%
GAGTTTGCATTGTAACCTCA+AGG + chr1_1:34041627-34041646 Msa0019540:three_prime_UTR 40.0%
! TTGTTTGTTCGTTTGGCTCG+AGG + chr1_1:34035987-34036006 Msa0019540:five_prime_UTR 45.0%
! TGTTTGTTCGTTTGGCTCGA+GGG + chr1_1:34035988-34036007 Msa0019540:five_prime_UTR 45.0%
! CAATTTTACCAGTTGCGCCA+AGG - chr1_1:34036018-34036037 None:intergenic 45.0%
! GTTGCCCTTGTTTGTTCGTT+TGG + chr1_1:34036175-34036194 Msa0019540:five_prime_UTR 45.0%
CGAGCCAAACGAACAAACAA+GGG - chr1_1:34035987-34036006 None:intergenic 45.0%
ACGAGCCAAACGAACAAACA+AGG - chr1_1:34036183-34036202 None:intergenic 45.0%
! TTGTTCGTTTGGCTCGTGTT+TGG + chr1_1:34036186-34036205 Msa0019540:five_prime_UTR 45.0%
GCACAAATACTCCTCGGATT+AGG + chr1_1:34036295-34036314 Msa0019540:five_prime_UTR 45.0%
GAACCGGATTGAATCATAGC+TGG - chr1_1:34036627-34036646 None:intergenic 45.0%
TGCAGAAATACAGATGGGCA+AGG - chr1_1:34036997-34037016 None:intergenic 45.0%
GGAGCCAACTTTGATGTTGT+TGG + chr1_1:34037086-34037105 Msa0019540:five_prime_UTR 45.0%
GATGTTGTTGGAGCTTCGTA+TGG + chr1_1:34037098-34037117 Msa0019540:five_prime_UTR 45.0%
ACTCCCAAGGGAATCTATCA+TGG + chr1_1:34037360-34037379 Msa0019540:five_prime_UTR 45.0%
TATGGTAGGTTCACCCTTTG+TGG + chr1_1:34037466-34037485 Msa0019540:intron 45.0%
TTGATTCCTCGAAGAACTCC+CGG - chr1_1:34037594-34037613 None:intergenic 45.0%
GTGTTCCTCTCTTGGAGTAA+TGG + chr1_1:34037672-34037691 Msa0019540:five_prime_UTR 45.0%
! TTGGTGTTTACCTGGCTTGA+TGG + chr1_1:34037774-34037793 Msa0019540:five_prime_UTR 45.0%
! TGGTGTTTACCTGGCTTGAT+GGG + chr1_1:34037775-34037794 Msa0019540:five_prime_UTR 45.0%
AGCTTGTATCATGGGTGATG+TGG + chr1_1:34037913-34037932 Msa0019540:exon 45.0%
! TCAAATCTGGAATCCTTGCC+TGG + chr1_1:34038001-34038020 Msa0019540:CDS 45.0%
GATTCACTTGATGCTTCTCC+AGG - chr1_1:34038022-34038041 None:intergenic 45.0%
TTTGCAGATGCCAACACTAC+CGG + chr1_1:34038164-34038183 Msa0019540:intron 45.0%
TTGCCTCATTGTGACAATGG+CGG - chr1_1:34038237-34038256 None:intergenic 45.0%
!! ACACCTGTTTGACTTGGTGT+CGG - chr1_1:34038473-34038492 None:intergenic 45.0%
CTACCATAGCGCAAAACATC+TGG - chr1_1:34038997-34039016 None:intergenic 45.0%
!! CAGCATATGGTCTTGTGCTA+TGG - chr1_1:34039047-34039066 None:intergenic 45.0%
CATAGCACAAGACCATATGC+TGG + chr1_1:34039045-34039064 Msa0019540:intron 45.0%
CAGTACCATTGTAATGGCTG+TGG + chr1_1:34039459-34039478 Msa0019540:CDS 45.0%
GTAATGGCTGTGGAATTTGC+AGG + chr1_1:34039469-34039488 Msa0019540:CDS 45.0%
! ATTTTATGGGATCGGAGGGA+GGG - chr1_1:34039644-34039663 None:intergenic 45.0%
! TATTTTATGGGATCGGAGGG+AGG - chr1_1:34039645-34039664 None:intergenic 45.0%
! TTGTTGCTTCTCAACTCTGC+TGG + chr1_1:34040023-34040042 Msa0019540:intron 45.0%
ATGTTACCTCGAAACACACG+GGG - chr1_1:34040092-34040111 None:intergenic 45.0%
! ACATAGAGGGCATGTATACC+TGG - chr1_1:34040578-34040597 None:intergenic 45.0%
CAGAACGACTTCGAACATAG+AGG - chr1_1:34040592-34040611 None:intergenic 45.0%
CTGATTGTGTTACCCGTAAC+AGG + chr1_1:34041033-34041052 Msa0019540:intron 45.0%
TGTGTTACCCGTAACAGGTT+TGG + chr1_1:34041038-34041057 Msa0019540:intron 45.0%
ACAGGATCCAAACCTGTTAC+GGG - chr1_1:34041048-34041067 None:intergenic 45.0%
CACAGGATCCAAACCTGTTA+CGG - chr1_1:34041049-34041068 None:intergenic 45.0%
TCTCGTCTGTCGTGTGTTAT+AGG - chr1_1:34041140-34041159 None:intergenic 45.0%
TATAACACACGACAGACGAG+AGG + chr1_1:34041139-34041158 Msa0019540:CDS 45.0%
TATCATTTGTCTCGCACCGA+AGG + chr1_1:34041499-34041518 Msa0019540:three_prime_UTR 45.0%
!!! TACTATTTTTTTTTTTTTTT+TGG + chr1_1:34038797-34038816 Msa0019540:intron 5.0%
! GTTTGTTCGTTTGGCTCGAG+GGG + chr1_1:34035989-34036008 Msa0019540:five_prime_UTR 50.0%
ACGAACAAACAAGGGCAACC+CGG - chr1_1:34036174-34036193 None:intergenic 50.0%
! TTTGGCTCGTGTTTGGTACG+TGG + chr1_1:34036193-34036212 Msa0019540:five_prime_UTR 50.0%
TTCATGTCTCGCAGTCACCA+TGG + chr1_1:34036583-34036602 Msa0019540:five_prime_UTR 50.0%
GCAACTGCGTAGTTCCACTT+CGG - chr1_1:34036843-34036862 None:intergenic 50.0%
TTGCTTCCTGCAGTTGGAGA+TGG - chr1_1:34036955-34036974 None:intergenic 50.0%
TTGTTGGAGCTTCGTATGGG+TGG + chr1_1:34037102-34037121 Msa0019540:five_prime_UTR 50.0%
ATGTTTCCGGGAGTTCTTCG+AGG + chr1_1:34037585-34037604 Msa0019540:five_prime_UTR 50.0%
! TGCTGGTTACAGTTGCTCTG+CGG + chr1_1:34037725-34037744 Msa0019540:five_prime_UTR 50.0%
! GGTGTTTACCTGGCTTGATG+GGG + chr1_1:34037776-34037795 Msa0019540:five_prime_UTR 50.0%
TTTAGTCACCCCATCAAGCC+AGG - chr1_1:34037787-34037806 None:intergenic 50.0%
GAAGCAGGGCAGTAAGCTTA+AGG - chr1_1:34037863-34037882 None:intergenic 50.0%
ACTTGATGCTTCTCCAGGCA+AGG - chr1_1:34038017-34038036 None:intergenic 50.0%
TGCAACAAGGAGCCCTGATT+CGG - chr1_1:34038198-34038217 None:intergenic 50.0%
TTGCCGCCATTGTCACAATG+AGG + chr1_1:34038231-34038250 Msa0019540:CDS 50.0%
!! ACCTGTTTGACTTGGTGTCG+GGG - chr1_1:34038471-34038490 None:intergenic 50.0%
!! CACCTGTTTGACTTGGTGTC+GGG - chr1_1:34038472-34038491 None:intergenic 50.0%
ACAAGGTGTGCCAACCTAGT+GGG - chr1_1:34038865-34038884 None:intergenic 50.0%
TACAAGGTGTGCCAACCTAG+TGG - chr1_1:34038866-34038885 None:intergenic 50.0%
!! ATCATAGGGAGCACTAGGCA+AGG - chr1_1:34038899-34038918 None:intergenic 50.0%
GGAAAACAGTCACACCTGTG+TGG + chr1_1:34040044-34040063 Msa0019540:intron 50.0%
AACAGTCACACCTGTGTGGA+AGG + chr1_1:34040048-34040067 Msa0019540:intron 50.0%
ATGCATTGCTCCTTCCACAC+AGG - chr1_1:34040061-34040080 None:intergenic 50.0%
GTCAAGGGTTTGGGAGAGAT+TGG + chr1_1:34040618-34040637 Msa0019540:CDS 50.0%
TGGATCCTGTGCAATGACTG+CGG + chr1_1:34041058-34041077 Msa0019540:CDS 50.0%
TGTTTCCGCAGTCATTGCAC+AGG - chr1_1:34041066-34041085 None:intergenic 50.0%
TGCAATGACTGCGGAAACAC+CGG + chr1_1:34041067-34041086 Msa0019540:CDS 50.0%
TCAACCCCGCTTAGACACAA+TGG + chr1_1:34041273-34041292 Msa0019540:three_prime_UTR 50.0%
! TTTGGCTCGAGGGGTAACCT+TGG + chr1_1:34035998-34036017 Msa0019540:five_prime_UTR 55.0%
! CAAATGGTGGGACCCCTTCT+CGG + chr1_1:34036120-34036139 Msa0019540:five_prime_UTR 55.0%
CATATGCAGGGTCCGAGAAG+GGG - chr1_1:34036135-34036154 None:intergenic 55.0%
GCATATGCAGGGTCCGAGAA+GGG - chr1_1:34036136-34036155 None:intergenic 55.0%
CTTCTCGGACCCTGCATATG+CGG + chr1_1:34036135-34036154 Msa0019540:five_prime_UTR 55.0%
TTCTCGGACCCTGCATATGC+GGG + chr1_1:34036136-34036155 Msa0019540:five_prime_UTR 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr1_1:34036147-34036166 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr1_1:34036148-34036167 None:intergenic 55.0%
! TCCTCGGATTAGGTGTGTCG+TGG + chr1_1:34036305-34036324 Msa0019540:five_prime_UTR 55.0%
ACCACGACACACCTAATCCG+AGG - chr1_1:34036309-34036328 None:intergenic 55.0%
!! GTGTGGGTGTCGGACATGAT+AGG - chr1_1:34036340-34036359 None:intergenic 55.0%
TTGGAGCCATCTCCAACTGC+AGG + chr1_1:34036946-34036965 Msa0019540:five_prime_UTR 55.0%
GGCATCTTCTCCGGTAGTGT+TGG - chr1_1:34038177-34038196 None:intergenic 55.0%
ACCGGAGAAGATGCCGAATC+AGG + chr1_1:34038182-34038201 Msa0019540:CDS 55.0%
!! CCCTGATTCGGCATCTTCTC+CGG - chr1_1:34038186-34038205 None:intergenic 55.0%
CCGGAGAAGATGCCGAATCA+GGG + chr1_1:34038183-34038202 Msa0019540:CDS 55.0%
CAAGGTGTGCCAACCTAGTG+GGG - chr1_1:34038864-34038883 None:intergenic 55.0%
TGATTGCCCCGTGTGTTTCG+AGG + chr1_1:34040083-34040102 Msa0019540:intron 55.0%
GCGGAAACACCGGTCATGTT+CGG + chr1_1:34041077-34041096 Msa0019540:CDS 55.0%
CAGACGAGAGGATGAGCTAG+TGG + chr1_1:34041151-34041170 Msa0019540:exon 55.0%
CATTTGTCTCGCACCGAAGG+TGG + chr1_1:34041502-34041521 Msa0019540:three_prime_UTR 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_1:34036007-34036026 Msa0019540:five_prime_UTR 60.0%
CGAGAAGGGGTCCCACCATT+TGG - chr1_1:34036122-34036141 None:intergenic 60.0%
CGCATATGCAGGGTCCGAGA+AGG - chr1_1:34036137-34036156 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr1_1:34036152-34036171 Msa0019540:five_prime_UTR 60.0%
! CTTTCGCAGGGCATCCGAAG+TGG + chr1_1:34036826-34036845 Msa0019540:five_prime_UTR 60.0%
GCCCCGACACCAAGTCAAAC+AGG + chr1_1:34038467-34038486 Msa0019540:CDS 60.0%
TTATGGGATCGGAGGGAGGG+TGG - chr1_1:34039641-34039660 None:intergenic 60.0%
! GGAGCTTTGTGAGCGCTCAC+CGG - chr1_1:34040493-34040512 None:intergenic 60.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr1_1:34036153-34036172 Msa0019540:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 34035683 34041663 34035683 ID=Msa0019540;Name=Msa0019540
chr1_1 mRNA 34035683 34041663 34035683 ID=Msa0019540-mRNA-1;Parent=Msa0019540;Name=Msa0019540-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2147|0.72|0.91|0.91|0.63|0.66|12|498|283
chr1_1 exon 34035683 34037469 34035683 ID=Msa0019540-mRNA-1:exon:10821;Parent=Msa0019540-mRNA-1
chr1_1 exon 34037563 34038086 34037563 ID=Msa0019540-mRNA-1:exon:10822;Parent=Msa0019540-mRNA-1
chr1_1 exon 34038171 34038258 34038171 ID=Msa0019540-mRNA-1:exon:10823;Parent=Msa0019540-mRNA-1
chr1_1 exon 34038429 34038488 34038429 ID=Msa0019540-mRNA-1:exon:10824;Parent=Msa0019540-mRNA-1
chr1_1 exon 34038613 34038645 34038613 ID=Msa0019540-mRNA-1:exon:10825;Parent=Msa0019540-mRNA-1
chr1_1 exon 34038998 34039026 34038998 ID=Msa0019540-mRNA-1:exon:10826;Parent=Msa0019540-mRNA-1
chr1_1 exon 34039211 34039288 34039211 ID=Msa0019540-mRNA-1:exon:10827;Parent=Msa0019540-mRNA-1
chr1_1 exon 34039447 34039490 34039447 ID=Msa0019540-mRNA-1:exon:10828;Parent=Msa0019540-mRNA-1
chr1_1 exon 34039879 34039919 34039879 ID=Msa0019540-mRNA-1:exon:10829;Parent=Msa0019540-mRNA-1
chr1_1 exon 34040401 34040492 34040401 ID=Msa0019540-mRNA-1:exon:10830;Parent=Msa0019540-mRNA-1
chr1_1 exon 34040579 34040690 34040579 ID=Msa0019540-mRNA-1:exon:10831;Parent=Msa0019540-mRNA-1
chr1_1 exon 34041055 34041663 34041055 ID=Msa0019540-mRNA-1:exon:10832;Parent=Msa0019540-mRNA-1
chr1_1 five_prime_UTR 34035683 34037469 34035683 ID=Msa0019540-mRNA-1:five_prime_utr;Parent=Msa0019540-mRNA-1
chr1_1 five_prime_UTR 34037563 34037922 34037563 ID=Msa0019540-mRNA-1:five_prime_utr;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34037923 34038086 34037923 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34038171 34038258 34038171 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34038429 34038488 34038429 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34038613 34038645 34038613 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34038998 34039026 34038998 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34039211 34039288 34039211 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34039447 34039490 34039447 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34039879 34039919 34039879 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34040401 34040492 34040401 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34040579 34040690 34040579 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 CDS 34041055 34041165 34041055 ID=Msa0019540-mRNA-1:cds;Parent=Msa0019540-mRNA-1
chr1_1 three_prime_UTR 34041166 34041663 34041166 ID=Msa0019540-mRNA-1:three_prime_utr;Parent=Msa0019540-mRNA-1
Gene Sequence

>Msa0019540

ATGGGTGATGTGGCAGCGTTGCACTCTGAATGCAATGACACGAAACATACGACCCAAGAAGACGTTAATCCTCCAAAATCAAATCTGGAATCCTTGCCTGGAGAAGCATCAAGTGAATCTATAAACACAAATGATTTGCAAGATAAAGGATACATGGAATATGGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCTCCTTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTAGATTATAAACATAGACACGAAATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGCAACTGAACAAGAGATGTTTTGCGCTATGGTAGTTTCACGAATGTTCAGCCAAATTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGACTTTCTTCCATTGTAACAAGTGTGTATTTATTTGAATCAACAAAAGAAATTGTTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTATAGATGAAATGAGAGAACATCACCGGTATACATGCCCTCTATGTTCGAAGTCGTTCTGTGATATGTCAAGGGTTTGGGAGAGATTGGACATCGAGATTGCTGCTACGCCAATGCCTGAGCAATACCAAAATAAAATGGTTTGGATCCTGTGCAATGACTGCGGAAACACCGGTCATGTTCGGTTCCATTTTGTGGCTCTAAAATGCCTCAACTGCAACTCCTATAACACACGACAGACGAGAGGATGA
Protein sequence

>Msa0019540

MGDVAALHSECNDTKHTTQEDVNPPKSNLESLPGEASSESINTNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHEMPRHQVKQVICSLCATEQEMFCAMVVSRMFSQIVLTVVFVWASTSVRHASSLTMIYLSSSTIVMAVEFAELVDMRLSSIVTSVYLFESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIAATPMPEQYQNKMVWILCNDCGNTGHVRFHFVALKCLNCNSYNTRQTRG*