AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0068830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0068830 MtrunA17_Chr1g0173121 87.405 262 23 3 1 260 97 350 6.20e-163 461
Msa0068830 MtrunA17_Chr1g0159551 79.848 263 42 4 1 260 93 347 1.67e-145 416
Msa0068830 MtrunA17_Chr8g0382021 58.537 246 96 4 1 241 118 362 2.39e-94 287
Msa0068830 MtrunA17_Chr5g0440421 30.385 260 146 9 5 235 103 356 6.95e-21 92.0
Msa0068830 MtrunA17_Chr4g0044511 41.606 137 65 5 110 238 240 369 3.36e-20 90.1
Msa0068830 MtrunA17_Chr4g0044481 35.252 139 74 5 110 241 207 336 3.47e-19 87.0
Msa0068830 MtrunA17_Chr7g0232411 28.000 250 153 5 17 243 98 343 5.45e-19 86.7
Msa0068830 MtrunA17_Chr8g0334851 28.627 255 148 10 15 242 99 346 6.92e-19 86.3
Msa0068830 MtrunA17_Chr7g0232341 27.016 248 158 7 17 243 98 343 1.55e-18 85.1
Msa0068830 MtrunA17_Chr7g0241801 31.383 188 114 6 96 270 176 361 1.85e-18 84.7
Msa0068830 MtrunA17_Chr8g0336691 33.880 183 99 5 82 243 1076 1257 2.57e-18 85.1
Msa0068830 MtrunA17_Chr8g0336691 31.013 158 101 3 93 243 195 351 2.84e-14 73.2
Msa0068830 MtrunA17_Chr8g0334861 27.386 241 143 8 27 241 105 339 3.84e-18 84.0
Msa0068830 MtrunA17_Chr6g0459311 28.151 238 145 8 28 243 115 348 7.31e-18 83.2
Msa0068830 MtrunA17_Chr6g0486251 27.848 237 145 7 29 243 109 341 9.24e-18 82.8
Msa0068830 MtrunA17_Chr6g0486201 27.848 237 145 7 29 243 109 341 9.24e-18 82.8
Msa0068830 MtrunA17_Chr8g0373301 33.793 145 86 4 103 241 202 342 1.44e-17 82.4
Msa0068830 MtrunA17_Chr8g0366391 32.515 163 92 4 88 241 195 348 1.57e-17 82.4
Msa0068830 MtrunA17_Chr6g0449931 28.736 261 155 8 7 241 88 343 5.17e-17 80.9
Msa0068830 MtrunA17_Chr7g0243871 34.028 144 91 3 77 217 177 319 8.46e-17 80.1
Msa0068830 MtrunA17_Chr7g0243771 33.529 170 91 6 75 236 183 338 8.69e-17 80.1
Msa0068830 MtrunA17_Chr7g0243801 33.529 170 91 6 75 236 184 339 8.95e-17 80.1
Msa0068830 MtrunA17_Chr7g0232331 27.490 251 153 8 17 243 98 343 1.02e-16 80.1
Msa0068830 MtrunA17_Chr4g0014061 35.714 140 63 5 110 235 204 330 1.49e-16 79.3
Msa0068830 MtrunA17_Chr8g0339631 30.921 152 94 4 99 241 196 345 3.96e-16 78.2
Msa0068830 MtrunA17_Chr7g0275511 31.156 199 111 6 59 243 167 353 5.16e-16 77.8
Msa0068830 MtrunA17_Chr8g0336741 29.817 218 137 6 37 243 137 349 5.57e-16 77.8
Msa0068830 MtrunA17_Chr8g0336651 35.333 150 91 3 99 243 194 342 6.99e-16 77.8
Msa0068830 MtrunA17_Chr8g0336651 26.800 250 155 6 19 243 875 1121 1.43e-14 73.9
Msa0068830 MtrunA17_Chr8g0336651 33.607 122 77 3 89 207 522 642 3.81e-11 63.5
Msa0068830 MtrunA17_Chr4g0044501 28.571 161 98 5 88 241 196 346 7.00e-16 77.4
Msa0068830 MtrunA17_Chr8g0369341 34.559 136 82 5 108 241 216 346 7.48e-16 77.4
Msa0068830 MtrunA17_Chr8g0336731 39.450 109 61 2 139 243 261 368 7.55e-16 77.4
Msa0068830 MtrunA17_Chr4g0066151 36.054 147 84 5 95 233 191 335 8.79e-16 77.0
Msa0068830 MtrunA17_Chr7g0241781 34.848 132 83 3 96 226 176 305 1.10e-15 76.6
Msa0068830 MtrunA17_Chr8g0361371 33.099 142 83 3 108 243 208 343 1.11e-15 77.0
Msa0068830 MtrunA17_Chr7g0232391 33.571 140 88 2 109 243 204 343 1.41e-15 76.6
Msa0068830 MtrunA17_Chr7g0243811 32.500 160 96 4 80 235 155 306 1.60e-15 76.3
Msa0068830 MtrunA17_Chr4g0044521 29.878 164 102 4 81 237 170 327 2.53e-15 75.9
Msa0068830 MtrunA17_Chr4g0066281 29.091 165 105 5 80 237 171 330 4.48e-15 75.1
Msa0068830 MtrunA17_Chr2g0302961 25.551 227 154 4 27 240 116 340 4.57e-15 75.1
Msa0068830 MtrunA17_Chr7g0275681 26.449 276 166 9 5 260 101 359 4.65e-15 75.1
Msa0068830 MtrunA17_Chr7g0232311 29.098 244 148 6 19 241 100 339 5.19e-15 74.7
Msa0068830 MtrunA17_Chr4g0066131 34.000 150 89 5 95 236 186 333 6.34e-15 74.7
Msa0068830 MtrunA17_Chr3g0112761 31.214 173 104 6 74 241 167 329 6.54e-15 74.7
Msa0068830 MtrunA17_Chr8g0347281 38.168 131 72 4 120 241 218 348 7.86e-15 74.3
Msa0068830 MtrunA17_Chr5g0401721 38.542 96 52 2 160 253 271 361 8.23e-15 74.3
Msa0068830 MtrunA17_Chr7g0232401 32.609 184 105 6 69 241 168 343 1.05e-14 73.9
Msa0068830 MtrunA17_Chr1g0153451 28.514 249 152 8 18 243 96 341 1.14e-14 73.9
Msa0068830 MtrunA17_Chr8g0374941 33.898 118 68 3 133 241 1167 1283 1.36e-14 74.3
Msa0068830 MtrunA17_Chr8g0374941 33.898 118 68 3 133 241 229 345 5.92e-14 72.4
Msa0068830 MtrunA17_Chr4g0042891 39.604 101 58 1 112 209 212 312 1.38e-14 73.6
Msa0068830 MtrunA17_Chr8g0347271 36.806 144 75 5 107 241 213 349 1.51e-14 73.6
Msa0068830 MtrunA17_Chr7g0243781 30.625 160 99 4 80 235 180 331 1.89e-14 73.2
Msa0068830 MtrunA17_Chr8g0334831 25.301 249 142 8 29 243 112 350 2.61e-14 72.8
Msa0068830 MtrunA17_Chr7g0232351 26.718 262 162 9 6 243 87 342 3.40e-14 72.0
Msa0068830 MtrunA17_Chr6g0463861 26.613 248 152 10 5 233 93 329 4.50e-14 72.0
Msa0068830 MtrunA17_Chr8g0335141 31.915 188 110 8 66 243 166 345 4.74e-14 72.0
Msa0068830 MtrunA17_Chr5g0426431 30.270 185 108 6 74 246 190 365 4.86e-14 72.0
Msa0068830 MtrunA17_Chr7g0235051 32.450 151 84 4 93 230 172 317 5.67e-14 71.6
Msa0068830 MtrunA17_Chr3g0118661 25.000 288 166 9 10 256 99 377 5.68e-14 71.6
Msa0068830 MtrunA17_Chr7g0265041 30.519 154 95 4 95 241 204 352 7.10e-14 71.6
Msa0068830 MtrunA17_Chr2g0302991 28.049 164 108 3 81 240 180 337 7.88e-14 71.2
Msa0068830 MtrunA17_Chr8g0339441 39.326 89 46 1 161 241 217 305 1.02e-13 70.9
Msa0068830 MtrunA17_Chr4g0053501 26.971 241 149 8 29 253 126 355 1.30e-13 70.9
Msa0068830 MtrunA17_Chr7g0243721 33.077 130 73 3 93 213 17 141 1.54e-13 66.6
Msa0068830 MtrunA17_Chr7g0243681 32.653 147 83 5 93 235 202 336 1.62e-13 70.5
Msa0068830 MtrunA17_Chr5g0426401 32.639 144 79 4 114 246 62 198 1.87e-13 69.3
Msa0068830 MtrunA17_Chr5g0420801 26.070 257 162 10 3 241 90 336 1.93e-13 70.1
Msa0068830 MtrunA17_Chr8g0339451 39.326 89 46 1 161 241 251 339 2.08e-13 70.1
Msa0068830 MtrunA17_Chr4g0060511 33.987 153 83 5 93 235 201 345 2.60e-13 69.7
Msa0068830 MtrunA17_Chr8g0339461 39.326 89 46 1 161 241 259 347 3.47e-13 69.3
Msa0068830 MtrunA17_Chr4g0066221 36.522 115 64 4 126 233 224 336 3.70e-13 69.3
Msa0068830 MtrunA17_Chr5g0414331 35.802 81 41 1 161 241 261 330 4.14e-13 69.3
Msa0068830 MtrunA17_Chr7g0243611 29.213 178 98 6 93 259 63 223 4.95e-13 68.2
Msa0068830 MtrunA17_Chr8g0374901 35.185 108 62 2 133 233 228 334 5.25e-13 68.9
Msa0068830 MtrunA17_Chr8g0334841 32.394 142 88 4 74 212 2 138 5.88e-13 65.9
Msa0068830 MtrunA17_Chr4g0072761 39.216 102 49 4 141 242 245 333 6.05e-13 68.6
Msa0068830 MtrunA17_Chr8g0361411 33.582 134 74 3 112 238 202 327 6.21e-13 68.6
Msa0068830 MtrunA17_Chr4g0066201 33.824 136 80 5 110 237 205 338 7.50e-13 68.6
Msa0068830 MtrunA17_Chr6g0463851 33.088 136 74 5 113 233 205 338 7.64e-13 68.6
Msa0068830 MtrunA17_Chr1g0179901 32.609 138 79 4 112 241 225 356 8.53e-13 68.2
Msa0068830 MtrunA17_Chr8g0335161 32.143 140 86 3 109 243 208 343 9.56e-13 68.2
Msa0068830 MtrunA17_Chr4g0053321 30.120 166 96 6 104 253 209 370 9.73e-13 68.2
Msa0068830 MtrunA17_Chr7g0243861 35.766 137 68 5 110 235 218 345 9.99e-13 68.2
Msa0068830 MtrunA17_Chr5g0419771 34.307 137 77 5 112 241 245 375 1.01e-12 68.2
Msa0068830 MtrunA17_Chr7g0265151 29.870 154 92 4 98 241 200 347 1.02e-12 68.2
Msa0068830 MtrunA17_Chr6g0454251 27.815 151 89 4 114 253 230 371 1.29e-12 67.4
Msa0068830 MtrunA17_Chr7g0243851 35.294 136 70 6 110 235 173 300 1.41e-12 67.4
Msa0068830 MtrunA17_Chr8g0367221 40.698 86 37 3 163 244 1547 1622 1.55e-12 68.2
Msa0068830 MtrunA17_Chr8g0367221 42.683 82 41 3 163 244 270 345 5.03e-12 66.6
Msa0068830 MtrunA17_Chr8g0355221 32.353 136 80 3 110 236 218 350 1.59e-12 67.4
Msa0068830 MtrunA17_Chr8g0339601 30.065 153 96 3 99 241 55 206 1.62e-12 67.0
Msa0068830 MtrunA17_Chr5g0414321 35.802 81 41 1 161 241 259 328 1.73e-12 67.4
Msa0068830 MtrunA17_Chr4g0042931 36.937 111 62 3 112 214 206 316 1.89e-12 67.4
Msa0068830 MtrunA17_Chr7g0243931 28.745 247 137 12 18 235 112 348 2.00e-12 67.0
Msa0068830 MtrunA17_Chr5g0412111 34.667 150 74 4 81 208 171 318 2.01e-12 67.0
Msa0068830 MtrunA17_Chr2g0278721 29.379 177 106 6 70 243 695 855 2.27e-12 67.4
Msa0068830 MtrunA17_Chr6g0464091 30.986 142 76 4 107 240 219 346 2.84e-12 66.6
Msa0068830 MtrunA17_Chr1g0153461 40.698 86 46 2 161 241 3 88 3.11e-12 64.7
Msa0068830 MtrunA17_Chr8g0370941 31.915 141 70 4 139 260 241 374 3.20e-12 66.6
Msa0068830 MtrunA17_Chr6g0466841 28.777 139 87 2 105 240 210 339 3.26e-12 66.6
Msa0068830 MtrunA17_Chr6g0466831 28.777 139 87 2 105 240 210 339 3.41e-12 66.6
Msa0068830 MtrunA17_Chr1g0196851 35.878 131 68 5 114 240 252 370 4.23e-12 66.2
Msa0068830 MtrunA17_Chr6g0454151 30.201 149 88 5 114 253 231 372 5.93e-12 65.9
Msa0068830 MtrunA17_Chr7g0243951 31.447 159 90 6 88 236 197 346 5.93e-12 65.9
Msa0068830 MtrunA17_Chr4g0066171 36.134 119 67 4 126 237 224 340 6.84e-12 65.5
Msa0068830 MtrunA17_Chr7g0243631 31.788 151 85 4 93 230 204 349 8.36e-12 65.5
Msa0068830 MtrunA17_Chr7g0243761 32.090 134 77 3 110 230 215 347 8.63e-12 65.1
Msa0068830 MtrunA17_Chr6g0462551 29.927 137 85 3 110 241 210 340 9.30e-12 65.1
Msa0068830 MtrunA17_Chr3g0118701 34.000 100 58 3 156 253 284 377 1.02e-11 65.1
Msa0068830 MtrunA17_Chr2g0294941 31.111 135 79 5 133 259 130 258 1.04e-11 64.7
Msa0068830 MtrunA17_Chr1g0207981 32.110 109 59 3 141 241 248 349 1.21e-11 64.7
Msa0068830 MtrunA17_Chr6g0462571 25.296 253 149 9 15 241 99 337 1.31e-11 64.7
Msa0068830 MtrunA17_Chr6g0464881 27.426 237 140 10 31 246 113 338 1.61e-11 64.3
Msa0068830 MtrunA17_Chr2g0307961 29.333 150 92 4 95 234 208 353 1.62e-11 64.3
Msa0068830 MtrunA17_Chr6g0454131 27.517 149 92 4 114 253 232 373 1.76e-11 64.3
Msa0068830 MtrunA17_Chr2g0279741 48.276 58 30 0 161 218 33 90 1.98e-11 60.8
Msa0068830 MtrunA17_Chr6g0454291 27.152 151 90 4 114 253 230 371 2.02e-11 64.3
Msa0068830 MtrunA17_Chr3g0112771 27.957 186 119 6 74 254 172 347 2.03e-11 63.9
Msa0068830 MtrunA17_Chr6g0453951 26.347 167 103 4 98 253 264 421 2.11e-11 64.3
Msa0068830 MtrunA17_Chr3g0118671 22.145 289 166 12 14 256 96 371 2.14e-11 63.9
Msa0068830 MtrunA17_Chr5g0412101 49.275 69 32 1 160 225 279 347 2.35e-11 63.9
Msa0068830 MtrunA17_Chr3g0118771 31.000 100 61 3 156 253 290 383 2.66e-11 63.9
Msa0068830 MtrunA17_Chr6g0453981 42.424 66 33 2 152 216 152 213 2.84e-11 62.0
Msa0068830 MtrunA17_Chr6g0454401 26.020 196 116 7 74 253 193 375 2.99e-11 63.5
Msa0068830 MtrunA17_Chr1g0165701 32.331 133 76 4 110 230 218 348 3.35e-11 63.5
Msa0068830 MtrunA17_Chr2g0294921 34.815 135 74 6 133 259 381 509 3.66e-11 63.5
Msa0068830 MtrunA17_Chr2g0302851 36.364 77 40 1 164 240 270 337 4.22e-11 63.2
Msa0068830 MtrunA17_Chr8g0374931 33.333 135 76 5 133 259 232 360 4.43e-11 63.2
Msa0068830 MtrunA17_Chr3g0092641 37.037 108 49 4 114 208 231 332 4.83e-11 63.2
Msa0068830 MtrunA17_Chr7g0218311 29.167 168 101 6 105 259 200 362 5.39e-11 62.8
Msa0068830 MtrunA17_Chr6g0464871 26.515 264 145 11 13 246 106 350 5.94e-11 62.8
Msa0068830 MtrunA17_Chr4g0039881 30.435 138 82 4 107 240 186 313 6.09e-11 62.8
Msa0068830 MtrunA17_Chr7g0265051 29.870 154 89 5 97 241 207 350 6.49e-11 62.8
Msa0068830 MtrunA17_Chr4g0050341 33.333 123 59 4 110 214 235 352 7.16e-11 62.4
Msa0068830 MtrunA17_Chr5g0419761 28.571 154 98 4 95 241 201 349 7.23e-11 62.4
Msa0068830 MtrunA17_Chr4g0066261 33.333 108 64 3 133 233 232 338 7.47e-11 62.4
Msa0068830 MtrunA17_Chr8g0365811 37.624 101 59 3 156 253 747 846 7.60e-11 62.8
Msa0068830 MtrunA17_Chr3g0118691 30.693 101 62 3 156 254 284 378 8.39e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0068830 AT1G73880.1 36.364 132 76 2 112 241 219 344 2.73e-20 90.9
Msa0068830 AT4G34135.1 31.429 175 104 4 74 241 186 351 2.16e-18 85.5
Msa0068830 AT4G34131.1 31.915 188 109 4 63 241 174 351 3.62e-18 84.7
Msa0068830 AT2G15490.3 28.571 245 144 8 19 241 114 349 2.82e-17 82.0
Msa0068830 AT2G15490.1 28.629 248 143 8 19 241 114 352 5.08e-17 81.3
Msa0068830 AT5G03490.1 25.869 259 153 10 2 241 100 338 8.63e-17 80.5
Msa0068830 AT2G15480.2 32.468 154 88 4 96 241 207 352 1.55e-16 79.7
Msa0068830 AT2G15480.1 32.468 154 88 4 96 241 207 352 1.66e-16 79.7
Msa0068830 AT1G51210.1 31.111 135 75 3 110 241 215 334 2.39e-15 76.3
Msa0068830 AT1G10400.1 35.714 140 70 6 110 245 216 339 2.46e-15 76.3
Msa0068830 AT4G34135.2 32.394 142 88 3 74 208 186 326 3.14e-15 75.1
Msa0068830 AT2G36780.1 27.018 285 167 12 1 260 99 367 5.30e-15 75.5
Msa0068830 AT3G50740.1 26.786 224 131 7 49 243 130 349 1.32e-14 73.9
Msa0068830 AT3G53160.1 34.722 144 71 5 110 241 215 347 2.04e-14 73.6
Msa0068830 AT2G36770.1 26.056 284 171 11 1 260 99 367 2.79e-14 73.2
Msa0068830 AT3G16520.2 29.474 190 118 5 76 257 168 349 3.00e-14 72.8
Msa0068830 AT3G16520.3 29.474 190 118 5 76 257 168 349 3.15e-14 72.8
Msa0068830 AT4G34138.1 30.065 153 93 4 96 241 207 352 3.26e-14 72.8
Msa0068830 AT3G16520.1 29.474 190 118 5 76 257 168 349 3.45e-14 72.8
Msa0068830 AT5G26310.1 24.904 261 162 8 16 243 85 344 1.03e-13 71.6
Msa0068830 AT4G01070.1 29.213 178 103 5 85 241 168 343 2.30e-13 70.5
Msa0068830 AT5G66690.1 27.602 221 133 7 49 243 125 344 5.00e-13 69.3
Msa0068830 AT5G14860.1 29.448 163 96 5 81 241 202 347 5.37e-13 69.3
Msa0068830 AT2G36750.1 25.000 260 162 9 5 241 99 348 5.72e-13 69.3
Msa0068830 AT3G53150.1 27.119 236 140 8 31 241 136 364 9.19e-13 68.6
Msa0068830 AT3G55700.1 30.952 168 92 6 57 208 144 303 1.87e-12 67.8
Msa0068830 AT1G06000.1 27.236 246 149 7 1 241 91 311 2.88e-12 67.0
Msa0068830 AT5G17050.1 33.019 106 60 1 136 241 242 336 3.37e-12 67.0
Msa0068830 AT2G36800.1 24.074 270 162 10 1 241 97 352 3.38e-12 67.0
Msa0068830 AT5G49690.1 43.590 78 31 1 163 240 266 330 3.62e-12 66.6
Msa0068830 AT5G12890.1 26.587 252 152 9 7 234 103 345 4.02e-12 66.6
Msa0068830 AT4G15490.1 34.454 119 68 3 100 213 209 322 4.16e-12 66.6
Msa0068830 AT4G01070.2 30.000 140 80 4 85 208 168 305 6.81e-12 65.5
Msa0068830 AT2G18570.1 25.957 235 152 7 27 241 107 339 7.68e-12 65.9
Msa0068830 AT2G26480.1 33.099 142 76 6 108 241 196 326 1.02e-11 65.5
Msa0068830 AT2G23250.1 28.824 170 104 6 55 214 132 294 1.09e-11 65.1
Msa0068830 AT3G21560.1 38.710 93 50 2 161 253 276 361 1.11e-11 65.5
Msa0068830 AT1G30530.1 33.019 106 60 1 136 241 236 330 1.65e-11 64.7
Msa0068830 AT5G65550.1 26.061 165 107 5 77 240 187 337 1.73e-11 64.7
Msa0068830 AT5G05860.1 33.088 136 85 3 74 208 170 300 1.87e-11 64.7
Msa0068830 AT3G11340.1 33.846 130 79 4 110 238 199 322 2.45e-11 64.3
Msa0068830 AT3G46670.1 30.233 129 82 3 114 241 208 329 3.98e-11 63.5
Msa0068830 AT1G22370.1 27.564 156 96 5 74 215 15 167 4.31e-11 62.8
Msa0068830 AT4G15500.1 24.878 205 131 6 31 213 115 318 4.77e-11 63.5
Msa0068830 AT2G23260.1 27.861 201 115 8 55 241 145 329 5.18e-11 63.2
Msa0068830 AT1G22370.2 27.564 156 96 5 74 215 185 337 5.92e-11 63.2
Msa0068830 AT3G46680.1 32.323 99 66 1 110 208 205 302 6.51e-11 62.8
Msa0068830 AT4G36770.1 33.333 108 63 3 141 241 235 340 6.83e-11 62.8
Msa0068830 AT2G36760.1 25.856 263 153 10 1 235 99 347 7.46e-11 62.8
Msa0068830 AT1G05680.1 47.059 51 27 0 161 211 260 310 7.58e-11 62.8
Msa0068830 AT2G31750.1 34.021 97 50 4 129 211 214 310 7.90e-11 62.8
Msa0068830 AT2G31750.2 31.959 97 52 2 129 211 214 310 8.50e-11 62.8
Msa0068830 AT1G01390.2 27.619 210 134 7 58 260 176 374 8.97e-11 62.8
Msa0068830 AT5G38010.1 33.981 103 60 2 110 208 209 307 9.19e-11 62.4
Msa0068830 AT1G01390.1 27.619 210 134 7 58 260 159 357 9.20e-11 62.4
Msa0068830 AT4G15480.1 49.057 53 27 0 156 208 272 324 9.40e-11 62.4

Find 80 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTGATGTTCCTTCTA+TGG 0.206414 1_2:-36103796 Msa0068830:CDS
AAAGCAAGATAAAGTTCATT+TGG 0.300854 1_2:-36103443 Msa0068830:CDS
ATTAAAGAAGTCACTGATTT+CGG 0.311763 1_2:+36103755 None:intergenic
TCAGTTATATATGTATCTTT+TGG 0.319665 1_2:-36103522 Msa0068830:CDS
GAAATTGAACAGATTGCAAC+TGG 0.321867 1_2:-36103474 Msa0068830:CDS
GATACATATATAACTGAGTT+TGG 0.332257 1_2:+36103528 None:intergenic
GTTTGCCTACCAGCTGTTCA+TGG 0.350990 1_2:-36102501 Msa0068830:three_prime_UTR
GTTCCTCGACTGCATCTCTT+TGG 0.352921 1_2:+36102710 None:intergenic
TTCTTCTTCTCAATGGTAAG+AGG 0.385858 1_2:+36103600 None:intergenic
TTCAATTTCTTCATCTGTCA+AGG 0.395467 1_2:+36103488 None:intergenic
AGACTTCAAATTGACAGGTT+TGG 0.406489 1_2:+36102596 None:intergenic
ACCTCAATGGATGGTTCATT+AGG 0.406704 1_2:+36102885 None:intergenic
TGAATCTTTCTTCTTCTCAA+TGG 0.406758 1_2:+36103593 None:intergenic
AAGCAAGATAAAGTTCATTT+GGG 0.407817 1_2:-36103442 Msa0068830:CDS
ATATCGGTGTTGCTGTATTC+TGG 0.411872 1_2:-36102528 Msa0068830:three_prime_UTR
GAAGAGAGAGTTGAAGGAAT+GGG 0.413081 1_2:-36103345 Msa0068830:CDS
GACATATTTGATGGAAATGA+AGG 0.416310 1_2:-36103396 Msa0068830:CDS
TTGCAACTTGTCTTGCTAGC+TGG 0.419039 1_2:+36102682 None:intergenic
CTCAATGGTAAGAGGGTTGA+AGG 0.419504 1_2:+36103608 None:intergenic
CACTTCCATTTGGGAGAAAG+TGG 0.420202 1_2:-36103844 Msa0068830:CDS
GGGTTTGAAGAGAGAGTTGA+AGG 0.426802 1_2:-36103351 Msa0068830:CDS
CTCTCTATCAACTCCAAGTA+AGG 0.431459 1_2:+36103666 None:intergenic
GATAAAGGAGACATATTTGA+TGG 0.433480 1_2:-36103405 Msa0068830:CDS
AAGAGAGAGTTGAAGGAATG+GGG 0.440212 1_2:-36103344 Msa0068830:CDS
AAGCATCCATCCTCCATAGA+AGG 0.444404 1_2:+36103783 None:intergenic
AAATTCAATATGTTGACATC+AGG 0.445844 1_2:+36102909 None:intergenic
AGTCATTGAAAGTCCTTACT+TGG 0.449851 1_2:-36103679 Msa0068830:CDS
TTGATAGACTTCAAATTGAC+AGG 0.461485 1_2:+36102591 None:intergenic
TGTCAATTTGAAGTCTATCA+AGG 0.462825 1_2:-36102589 Msa0068830:three_prime_UTR
TGTGAAGAGGCTAGAAAAGA+AGG 0.463650 1_2:+36104029 None:intergenic
TGTGATTCATGATAGTCTAA+TGG 0.466885 1_2:-36103946 Msa0068830:CDS
TCGACTGCATCTCTTTGGTT+AGG 0.467538 1_2:+36102715 None:intergenic
ACTTGGATTGCTCACCTCAA+TGG 0.467701 1_2:+36102872 None:intergenic
ACAAGTTGCAAAAGATCTGC+TGG 0.467762 1_2:-36102670 Msa0068830:three_prime_UTR
AAAGAGTAGGCATTCATGTA+TGG 0.476240 1_2:-36103571 Msa0068830:CDS
TCACTTGCAGTAAGAAGCAT+TGG 0.487565 1_2:-36103641 Msa0068830:CDS
TCTTCTTCTCAATGGTAAGA+GGG 0.495022 1_2:+36103601 None:intergenic
TGAAGAGAGAGTTGAAGGAA+TGG 0.495173 1_2:-36103346 Msa0068830:CDS
AGTCCCAATTAATATTGAAA+AGG 0.495863 1_2:-36102646 Msa0068830:three_prime_UTR
TTGAGAAGAAGTAAACATGT+TGG 0.497567 1_2:-36102566 Msa0068830:three_prime_UTR
TAACAGATTCGACTACTTGA+AGG 0.499177 1_2:-36102768 Msa0068830:intron
AAAAGAGGTGAACTTGCAAA+AGG 0.500030 1_2:-36103372 Msa0068830:CDS
CAGTAAGAAGCATTGGGCAG+TGG 0.505058 1_2:-36103634 Msa0068830:CDS
TATTATGATCCATGAACAGC+TGG 0.505786 1_2:+36102492 None:intergenic
TGAACAGATTGCAACTGGGT+TGG 0.509228 1_2:-36103469 Msa0068830:CDS
GAGTAATACATGTTGCATAT+CGG 0.510604 1_2:-36102544 Msa0068830:three_prime_UTR
GTGTTGAGAGATGCTGATAA+AGG 0.522956 1_2:-36103420 Msa0068830:CDS
GAATTCTATGCATTAAGTGA+TGG 0.537800 1_2:-36103723 Msa0068830:CDS
TCCTAATGAACCATCCATTG+AGG 0.540558 1_2:-36102886 Msa0068830:intron
GGATTGCTCACCTCAATGGA+TGG 0.540848 1_2:+36102876 None:intergenic
AGAAGAAAGATTCAAAGAGT+AGG 0.542388 1_2:-36103584 Msa0068830:CDS
ATAATATGCGAGCTTTCAAT+CGG 0.549850 1_2:+36103813 None:intergenic
GATGGAAATGAAGGGAAAAG+AGG 0.550269 1_2:-36103387 Msa0068830:CDS
AATTCTATGCATTAAGTGAT+GGG 0.555471 1_2:-36103722 Msa0068830:CDS
CACTTGCAGTAAGAAGCATT+GGG 0.567603 1_2:-36103640 Msa0068830:CDS
AATTCAATATGTTGACATCA+GGG 0.570111 1_2:+36102910 None:intergenic
AACAGATTCGACTACTTGAA+GGG 0.570388 1_2:-36102767 Msa0068830:intron
AGTAAGAAGCATTGGGCAGT+GGG 0.570505 1_2:-36103633 Msa0068830:CDS
ATATGCGAGCTTTCAATCGG+AGG 0.580434 1_2:+36103816 None:intergenic
GATGTTCCTTCTATGGAGGA+TGG 0.581305 1_2:-36103789 Msa0068830:CDS
TATTGATGTTCCTTCTATGG+AGG 0.586205 1_2:-36103793 Msa0068830:CDS
ACTTCCATTTGGGAGAAAGT+GGG 0.590924 1_2:-36103843 Msa0068830:CDS
GTAGGCATTCATGTATGGAA+TGG 0.593513 1_2:-36103566 Msa0068830:CDS
AAAGAGGTGAACTTGCAAAA+GGG 0.594152 1_2:-36103371 Msa0068830:CDS
TGATAGTCTAATGGCATCAG+TGG 0.597756 1_2:-36103937 Msa0068830:CDS
TTCACATCTTCGTGAGCCAG+TGG 0.606950 1_2:-36104012 Msa0068830:CDS
ACATATTTGATGGAAATGAA+GGG 0.609450 1_2:-36103395 Msa0068830:CDS
GTGTTCTGACGAGGAAGGAG+TGG 0.611463 1_2:-36102937 Msa0068830:CDS
ACAGATTCGACTACTTGAAG+GGG 0.624378 1_2:-36102766 Msa0068830:intron
AAGGAGCTTCTGTAACTGCA+AGG 0.627619 1_2:-36102627 Msa0068830:three_prime_UTR
ATTGTAGATGTGTTCTGACG+AGG 0.629197 1_2:-36102946 Msa0068830:intron
GATTGCATGAGTTCTACCAC+TGG 0.642870 1_2:+36103996 None:intergenic
ATGATCCATGAACAGCTGGT+AGG 0.645714 1_2:+36102496 None:intergenic
TCAATGGTAAGAGGGTTGAA+GGG 0.646857 1_2:+36103609 None:intergenic
TAACCAAAGAGATGCAGTCG+AGG 0.648854 1_2:-36102713 Msa0068830:CDS
TGGCTCACGAAGATGTGAAG+AGG 0.654412 1_2:+36104016 None:intergenic
TAGATGTGTTCTGACGAGGA+AGG 0.657819 1_2:-36102942 Msa0068830:CDS
CAGATTCGACTACTTGAAGG+GGG 0.669275 1_2:-36102765 Msa0068830:CDS
AAATTGAACAGATTGCAACT+GGG 0.679302 1_2:-36103473 Msa0068830:CDS
AGATTCGACTACTTGAAGGG+GGG 0.718182 1_2:-36102764 Msa0068830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAACAATTTATTTG+AGG + chr1_2:36103575-36103594 None:intergenic 15.0%
!! ACAATAAAACAATTTATTTG+AGG + chr1_2:36103575-36103594 None:intergenic 15.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_2:36103014-36103033 Msa0068830:intron 20.0%
!!! TGATTTTTCTTTTTCACTTT+TGG - chr1_2:36103736-36103755 Msa0068830:CDS 20.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_2:36103014-36103033 Msa0068830:intron 20.0%
!!! TGATTTTTCTTTTTCACTTT+TGG - chr1_2:36103736-36103755 Msa0068830:CDS 20.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_2:36102563-36102582 Msa0068830:three_prime_UTR 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_2:36102682-36102701 Msa0068830:three_prime_UTR 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_2:36102683-36102702 Msa0068830:three_prime_UTR 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_2:36102740-36102759 Msa0068830:CDS 25.0%
!!! ATTAAAGAAGTCACTGATTT+CGG + chr1_2:36102784-36102803 None:intergenic 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_2:36102814-36102833 Msa0068830:intron 25.0%
! GATACATATATAACTGAGTT+TGG + chr1_2:36103011-36103030 None:intergenic 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_2:36103093-36103112 Msa0068830:intron 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_2:36103094-36103113 Msa0068830:intron 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_2:36103141-36103160 Msa0068830:intron 25.0%
! ACAATTTATTTGTTTCCCAT+GGG + chr1_2:36103442-36103461 None:intergenic 25.0%
! AACACAATTGACTATTATGT+GGG + chr1_2:36103528-36103547 None:intergenic 25.0%
!! AAACAATTTATTTGAGGTCA+GGG + chr1_2:36103569-36103588 None:intergenic 25.0%
!! AAAACAATTTATTTGAGGTC+AGG + chr1_2:36103570-36103589 None:intergenic 25.0%
! AATTCAATATGTTGACATCA+GGG + chr1_2:36103629-36103648 None:intergenic 25.0%
! AAATTCAATATGTTGACATC+AGG + chr1_2:36103630-36103649 None:intergenic 25.0%
! AGTCCCAATTAATATTGAAA+AGG - chr1_2:36103890-36103909 Msa0068830:CDS 25.0%
!! GCTCCTTTTCAATATTAATT+GGG + chr1_2:36103896-36103915 None:intergenic 25.0%
!! AGCTCCTTTTCAATATTAAT+TGG + chr1_2:36103897-36103916 None:intergenic 25.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_2:36102563-36102582 Msa0068830:three_prime_UTR 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_2:36102682-36102701 Msa0068830:three_prime_UTR 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_2:36102683-36102702 Msa0068830:three_prime_UTR 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_2:36102740-36102759 Msa0068830:CDS 25.0%
!!! ATTAAAGAAGTCACTGATTT+CGG + chr1_2:36102784-36102803 None:intergenic 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_2:36102814-36102833 Msa0068830:intron 25.0%
! GATACATATATAACTGAGTT+TGG + chr1_2:36103011-36103030 None:intergenic 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_2:36103093-36103112 Msa0068830:intron 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_2:36103094-36103113 Msa0068830:intron 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_2:36103141-36103160 Msa0068830:intron 25.0%
! ACAATTTATTTGTTTCCCAT+GGG + chr1_2:36103442-36103461 None:intergenic 25.0%
! AACACAATTGACTATTATGT+GGG + chr1_2:36103528-36103547 None:intergenic 25.0%
!! AAACAATTTATTTGAGGTCA+GGG + chr1_2:36103569-36103588 None:intergenic 25.0%
!! AAAACAATTTATTTGAGGTC+AGG + chr1_2:36103570-36103589 None:intergenic 25.0%
! AATTCAATATGTTGACATCA+GGG + chr1_2:36103629-36103648 None:intergenic 25.0%
! AAATTCAATATGTTGACATC+AGG + chr1_2:36103630-36103649 None:intergenic 25.0%
! AGTCCCAATTAATATTGAAA+AGG - chr1_2:36103890-36103909 Msa0068830:CDS 25.0%
!! GCTCCTTTTCAATATTAATT+GGG + chr1_2:36103896-36103915 None:intergenic 25.0%
!! AGCTCCTTTTCAATATTAAT+TGG + chr1_2:36103897-36103916 None:intergenic 25.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_2:36102562-36102581 Msa0068830:three_prime_UTR 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_2:36102590-36102609 Msa0068830:three_prime_UTR 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_2:36102726-36102745 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_2:36102813-36102832 Msa0068830:intron 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_2:36102946-36102965 None:intergenic 30.0%
AGAAGAAAGATTCAAAGAGT+AGG - chr1_2:36102952-36102971 Msa0068830:intron 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_2:36103051-36103070 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_2:36103063-36103082 Msa0068830:intron 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_2:36103131-36103150 Msa0068830:intron 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_2:36103140-36103159 Msa0068830:intron 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_2:36103301-36103320 Msa0068830:intron 30.0%
CACAATTTATTTGTTTCCCA+TGG + chr1_2:36103443-36103462 None:intergenic 30.0%
GAACACAATTGACTATTATG+TGG + chr1_2:36103529-36103548 None:intergenic 30.0%
! AACAATTTATTTGAGGTCAG+GGG + chr1_2:36103568-36103587 None:intergenic 30.0%
AAATGGTTAAGCTCAAAACT+TGG + chr1_2:36103684-36103703 None:intergenic 30.0%
!!! GCTTAACCATTTCTTTTTTG+TGG - chr1_2:36103692-36103711 Msa0068830:CDS 30.0%
CTTTCTCCACAAAAAAGAAA+TGG + chr1_2:36103701-36103720 None:intergenic 30.0%
TTGATAGACTTCAAATTGAC+AGG + chr1_2:36103948-36103967 None:intergenic 30.0%
! TGTCAATTTGAAGTCTATCA+AGG - chr1_2:36103947-36103966 Msa0068830:CDS 30.0%
TTGAGAAGAAGTAAACATGT+TGG - chr1_2:36103970-36103989 Msa0068830:CDS 30.0%
GAGTAATACATGTTGCATAT+CGG - chr1_2:36103992-36104011 Msa0068830:CDS 30.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_2:36102562-36102581 Msa0068830:three_prime_UTR 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_2:36102590-36102609 Msa0068830:three_prime_UTR 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_2:36102726-36102745 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_2:36102813-36102832 Msa0068830:intron 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_2:36102946-36102965 None:intergenic 30.0%
AGAAGAAAGATTCAAAGAGT+AGG - chr1_2:36102952-36102971 Msa0068830:intron 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_2:36103051-36103070 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_2:36103063-36103082 Msa0068830:intron 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_2:36103131-36103150 Msa0068830:intron 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_2:36103140-36103159 Msa0068830:intron 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_2:36103301-36103320 Msa0068830:intron 30.0%
CACAATTTATTTGTTTCCCA+TGG + chr1_2:36103443-36103462 None:intergenic 30.0%
GAACACAATTGACTATTATG+TGG + chr1_2:36103529-36103548 None:intergenic 30.0%
! AACAATTTATTTGAGGTCAG+GGG + chr1_2:36103568-36103587 None:intergenic 30.0%
AAATGGTTAAGCTCAAAACT+TGG + chr1_2:36103684-36103703 None:intergenic 30.0%
!!! GCTTAACCATTTCTTTTTTG+TGG - chr1_2:36103692-36103711 Msa0068830:CDS 30.0%
CTTTCTCCACAAAAAAGAAA+TGG + chr1_2:36103701-36103720 None:intergenic 30.0%
TTGATAGACTTCAAATTGAC+AGG + chr1_2:36103948-36103967 None:intergenic 30.0%
! TGTCAATTTGAAGTCTATCA+AGG - chr1_2:36103947-36103966 Msa0068830:CDS 30.0%
TTGAGAAGAAGTAAACATGT+TGG - chr1_2:36103970-36103989 Msa0068830:CDS 30.0%
GAGTAATACATGTTGCATAT+CGG - chr1_2:36103992-36104011 Msa0068830:CDS 30.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_2:36102743-36102762 Msa0068830:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_2:36102857-36102876 Msa0068830:intron 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_2:36102938-36102957 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_2:36102939-36102958 None:intergenic 35.0%
AAAGAGTAGGCATTCATGTA+TGG - chr1_2:36102965-36102984 Msa0068830:intron 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_2:36103062-36103081 Msa0068830:intron 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_2:36103164-36103183 Msa0068830:intron 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_2:36103165-36103184 Msa0068830:intron 35.0%
! GATTTTGTGTAAAGCAACGA+TGG + chr1_2:36103483-36103502 None:intergenic 35.0%
! CGTTGCTTTACACAAAATCA+AGG - chr1_2:36103484-36103503 Msa0068830:CDS 35.0%
TAACAGATTCGACTACTTGA+AGG - chr1_2:36103768-36103787 Msa0068830:CDS 35.0%
AACAGATTCGACTACTTGAA+GGG - chr1_2:36103769-36103788 Msa0068830:CDS 35.0%
AGACTTCAAATTGACAGGTT+TGG + chr1_2:36103943-36103962 None:intergenic 35.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_2:36102743-36102762 Msa0068830:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_2:36102857-36102876 Msa0068830:intron 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_2:36102938-36102957 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_2:36102939-36102958 None:intergenic 35.0%
AAAGAGTAGGCATTCATGTA+TGG - chr1_2:36102965-36102984 Msa0068830:intron 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_2:36103062-36103081 Msa0068830:intron 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_2:36103164-36103183 Msa0068830:intron 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_2:36103165-36103184 Msa0068830:intron 35.0%
! GATTTTGTGTAAAGCAACGA+TGG + chr1_2:36103483-36103502 None:intergenic 35.0%
! CGTTGCTTTACACAAAATCA+AGG - chr1_2:36103484-36103503 Msa0068830:CDS 35.0%
TAACAGATTCGACTACTTGA+AGG - chr1_2:36103768-36103787 Msa0068830:CDS 35.0%
AACAGATTCGACTACTTGAA+GGG - chr1_2:36103769-36103788 Msa0068830:CDS 35.0%
AGACTTCAAATTGACAGGTT+TGG + chr1_2:36103943-36103962 None:intergenic 35.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_2:36102510-36102529 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_2:36102599-36102618 Msa0068830:three_prime_UTR 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_2:36102693-36102712 Msa0068830:exon 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_2:36102700-36102719 None:intergenic 40.0%
CTCTCTATCAACTCCAAGTA+AGG + chr1_2:36102873-36102892 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_2:36102895-36102914 Msa0068830:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_2:36102896-36102915 Msa0068830:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_2:36102930-36102949 None:intergenic 40.0%
GTAGGCATTCATGTATGGAA+TGG - chr1_2:36102970-36102989 Msa0068830:intron 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_2:36103116-36103135 Msa0068830:intron 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_2:36103149-36103168 Msa0068830:intron 40.0%
TGAAGAGAGAGTTGAAGGAA+TGG - chr1_2:36103190-36103209 Msa0068830:intron 40.0%
GAAGAGAGAGTTGAAGGAAT+GGG - chr1_2:36103191-36103210 Msa0068830:intron 40.0%
AAGAGAGAGTTGAAGGAATG+GGG - chr1_2:36103192-36103211 Msa0068830:intron 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_2:36103239-36103258 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_2:36103240-36103259 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_2:36103262-36103281 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_2:36103273-36103292 Msa0068830:intron 40.0%
CAAATTCCATCGTATCCCAT+GGG - chr1_2:36103424-36103443 Msa0068830:CDS 40.0%
AGCAACGATGGAATTGTGTT+GGG + chr1_2:36103471-36103490 None:intergenic 40.0%
AAGCAACGATGGAATTGTGT+TGG + chr1_2:36103472-36103491 None:intergenic 40.0%
ATTGTAGATGTGTTCTGACG+AGG - chr1_2:36103590-36103609 Msa0068830:CDS 40.0%
TCCTAATGAACCATCCATTG+AGG - chr1_2:36103650-36103669 Msa0068830:CDS 40.0%
ACCTCAATGGATGGTTCATT+AGG + chr1_2:36103654-36103673 None:intergenic 40.0%
ACAGATTCGACTACTTGAAG+GGG - chr1_2:36103770-36103789 Msa0068830:CDS 40.0%
ACAAGTTGCAAAAGATCTGC+TGG - chr1_2:36103866-36103885 Msa0068830:CDS 40.0%
!! ATATCGGTGTTGCTGTATTC+TGG - chr1_2:36104008-36104027 Msa0068830:CDS 40.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_2:36102510-36102529 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_2:36102599-36102618 Msa0068830:three_prime_UTR 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_2:36102693-36102712 Msa0068830:exon 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_2:36102700-36102719 None:intergenic 40.0%
CTCTCTATCAACTCCAAGTA+AGG + chr1_2:36102873-36102892 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_2:36102895-36102914 Msa0068830:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_2:36102896-36102915 Msa0068830:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_2:36102930-36102949 None:intergenic 40.0%
GTAGGCATTCATGTATGGAA+TGG - chr1_2:36102970-36102989 Msa0068830:intron 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_2:36103116-36103135 Msa0068830:intron 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_2:36103149-36103168 Msa0068830:intron 40.0%
TGAAGAGAGAGTTGAAGGAA+TGG - chr1_2:36103190-36103209 Msa0068830:intron 40.0%
GAAGAGAGAGTTGAAGGAAT+GGG - chr1_2:36103191-36103210 Msa0068830:intron 40.0%
AAGAGAGAGTTGAAGGAATG+GGG - chr1_2:36103192-36103211 Msa0068830:intron 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_2:36103239-36103258 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_2:36103240-36103259 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_2:36103262-36103281 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_2:36103273-36103292 Msa0068830:intron 40.0%
CAAATTCCATCGTATCCCAT+GGG - chr1_2:36103424-36103443 Msa0068830:CDS 40.0%
AGCAACGATGGAATTGTGTT+GGG + chr1_2:36103471-36103490 None:intergenic 40.0%
AAGCAACGATGGAATTGTGT+TGG + chr1_2:36103472-36103491 None:intergenic 40.0%
ATTGTAGATGTGTTCTGACG+AGG - chr1_2:36103590-36103609 Msa0068830:CDS 40.0%
TCCTAATGAACCATCCATTG+AGG - chr1_2:36103650-36103669 Msa0068830:CDS 40.0%
ACCTCAATGGATGGTTCATT+AGG + chr1_2:36103654-36103673 None:intergenic 40.0%
ACAGATTCGACTACTTGAAG+GGG - chr1_2:36103770-36103789 Msa0068830:CDS 40.0%
ACAAGTTGCAAAAGATCTGC+TGG - chr1_2:36103866-36103885 Msa0068830:CDS 40.0%
!! ATATCGGTGTTGCTGTATTC+TGG - chr1_2:36104008-36104027 Msa0068830:CDS 40.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_2:36102543-36102562 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_2:36102692-36102711 Msa0068830:exon 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_2:36102723-36102742 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_2:36102747-36102766 Msa0068830:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_2:36102756-36102775 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_2:36102903-36102922 Msa0068830:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_2:36102931-36102950 None:intergenic 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_2:36103067-36103086 Msa0068830:intron 45.0%
GGGTTTGAAGAGAGAGTTGA+AGG - chr1_2:36103185-36103204 Msa0068830:intron 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_2:36103210-36103229 Msa0068830:intron 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_2:36103211-36103230 Msa0068830:intron 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_2:36103241-36103260 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_2:36103248-36103267 Msa0068830:intron 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_2:36103263-36103282 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_2:36103269-36103288 Msa0068830:intron 45.0%
TTGTTTCCCATGGGATACGA+TGG + chr1_2:36103433-36103452 None:intergenic 45.0%
TAGATGTGTTCTGACGAGGA+AGG - chr1_2:36103594-36103613 Msa0068830:CDS 45.0%
ACTTGGATTGCTCACCTCAA+TGG + chr1_2:36103667-36103686 None:intergenic 45.0%
CAGATTCGACTACTTGAAGG+GGG - chr1_2:36103771-36103790 Msa0068830:CDS 45.0%
AGATTCGACTACTTGAAGGG+GGG - chr1_2:36103772-36103791 Msa0068830:CDS 45.0%
TCGACTGCATCTCTTTGGTT+AGG + chr1_2:36103824-36103843 None:intergenic 45.0%
TAACCAAAGAGATGCAGTCG+AGG - chr1_2:36103823-36103842 Msa0068830:CDS 45.0%
TTGCAACTTGTCTTGCTAGC+TGG + chr1_2:36103857-36103876 None:intergenic 45.0%
AAGGAGCTTCTGTAACTGCA+AGG - chr1_2:36103909-36103928 Msa0068830:CDS 45.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_2:36102543-36102562 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_2:36102692-36102711 Msa0068830:exon 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_2:36102723-36102742 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_2:36102747-36102766 Msa0068830:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_2:36102756-36102775 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_2:36102903-36102922 Msa0068830:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_2:36102931-36102950 None:intergenic 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_2:36103067-36103086 Msa0068830:intron 45.0%
GGGTTTGAAGAGAGAGTTGA+AGG - chr1_2:36103185-36103204 Msa0068830:intron 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_2:36103210-36103229 Msa0068830:intron 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_2:36103211-36103230 Msa0068830:intron 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_2:36103241-36103260 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_2:36103248-36103267 Msa0068830:intron 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_2:36103263-36103282 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_2:36103269-36103288 Msa0068830:intron 45.0%
TTGTTTCCCATGGGATACGA+TGG + chr1_2:36103433-36103452 None:intergenic 45.0%
TAGATGTGTTCTGACGAGGA+AGG - chr1_2:36103594-36103613 Msa0068830:CDS 45.0%
ACTTGGATTGCTCACCTCAA+TGG + chr1_2:36103667-36103686 None:intergenic 45.0%
CAGATTCGACTACTTGAAGG+GGG - chr1_2:36103771-36103790 Msa0068830:CDS 45.0%
AGATTCGACTACTTGAAGGG+GGG - chr1_2:36103772-36103791 Msa0068830:CDS 45.0%
TCGACTGCATCTCTTTGGTT+AGG + chr1_2:36103824-36103843 None:intergenic 45.0%
TAACCAAAGAGATGCAGTCG+AGG - chr1_2:36103823-36103842 Msa0068830:CDS 45.0%
TTGCAACTTGTCTTGCTAGC+TGG + chr1_2:36103857-36103876 None:intergenic 45.0%
AAGGAGCTTCTGTAACTGCA+AGG - chr1_2:36103909-36103928 Msa0068830:CDS 45.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_2:36102523-36102542 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_2:36102524-36102543 Msa0068830:three_prime_UTR 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_2:36102902-36102921 Msa0068830:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_2:36103252-36103271 Msa0068830:intron 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_2:36103259-36103278 None:intergenic 50.0%
GGATTGCTCACCTCAATGGA+TGG + chr1_2:36103663-36103682 None:intergenic 50.0%
GTTCCTCGACTGCATCTCTT+TGG + chr1_2:36103829-36103848 None:intergenic 50.0%
GTTTGCCTACCAGCTGTTCA+TGG - chr1_2:36104035-36104054 Msa0068830:CDS 50.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_2:36102523-36102542 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_2:36102524-36102543 Msa0068830:three_prime_UTR 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_2:36102902-36102921 Msa0068830:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_2:36103252-36103271 Msa0068830:intron 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_2:36103259-36103278 None:intergenic 50.0%
GGATTGCTCACCTCAATGGA+TGG + chr1_2:36103663-36103682 None:intergenic 50.0%
GTTCCTCGACTGCATCTCTT+TGG + chr1_2:36103829-36103848 None:intergenic 50.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_2:36103251-36103270 Msa0068830:intron 55.0%
GTGTTCTGACGAGGAAGGAG+TGG - chr1_2:36103599-36103618 Msa0068830:CDS 55.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_2:36103251-36103270 Msa0068830:intron 55.0%
GTGTTCTGACGAGGAAGGAG+TGG - chr1_2:36103599-36103618 Msa0068830:CDS 55.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_2:36103223-36103242 Msa0068830:intron 60.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_2:36103223-36103242 Msa0068830:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 36102501 36104057 36102501 ID=Msa0068830;Name=Msa0068830
chr1_2 mRNA 36102501 36104057 36102501 ID=Msa0068830-mRNA-1;Parent=Msa0068830;Name=Msa0068830-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.66|1|1|1|3|206|290
chr1_2 exon 36102501 36102784 36102501 ID=Msa0068830-mRNA-1:exon:11519;Parent=Msa0068830-mRNA-1
chr1_2 exon 36102887 36102961 36102887 ID=Msa0068830-mRNA-1:exon:11518;Parent=Msa0068830-mRNA-1
chr1_2 exon 36103338 36104057 36103338 ID=Msa0068830-mRNA-1:exon:11517;Parent=Msa0068830-mRNA-1
chr1_2 CDS 36103338 36104057 36103338 ID=Msa0068830-mRNA-1:cds;Parent=Msa0068830-mRNA-1
chr1_2 CDS 36102887 36102961 36102887 ID=Msa0068830-mRNA-1:cds;Parent=Msa0068830-mRNA-1
chr1_2 CDS 36102707 36102784 36102707 ID=Msa0068830-mRNA-1:cds;Parent=Msa0068830-mRNA-1
chr1_2 three_prime_UTR 36102501 36102706 36102501 ID=Msa0068830-mRNA-1:three_prime_utr;Parent=Msa0068830-mRNA-1
Gene Sequence

>Msa0068830

ATGGTTCCTTCTTTTCTAGCCTCTTCACATCTTCGTGAGCCAGTGGTAGAACTCATGCAATCACTTTCATCTGTTTTCAAAAGGGTTGTTGTGATTCATGATAGTCTAATGGCATCAGTGGTACAAGATGCTAAAAACATAGAAAATGTTGAGAATTACTCATTTCTCAGTACATGTGCTTTTACAATTTTCACTTCCATTTGGGAGAAAGTGGGAAAACCTCCGATTGAAAGCTCGCATATTATTGATGTTCCTTCTATGGAGGATGGATGCTTCACAGCCGAAATCAGTGACTTCTTTAATGCACAAAAAGAATTCTATGCATTAAGTGATGGGAGCATCTACAATACAAGCAGAGTCATTGAAAGTCCTTACTTGGAGTTGATAGAGAGAATCACTTGCAGTAAGAAGCATTGGGCAGTGGGACCCTTCAACCCTCTTACCATTGAGAAGAAGAAAGATTCAAAGAGTAGGCATTCATGTATGGAATGGCTTGATAAACAAGAACCAAACTCAGTTATATATGTATCTTTTGGAACAACAACAACCTTGACAGATGAAGAAATTGAACAGATTGCAACTGGGTTGGAACAAAGCAAGATAAAGTTCATTTGGGTGTTGAGAGATGCTGATAAAGGAGACATATTTGATGGAAATGAAGGGAAAAGAGGTGAACTTGCAAAAGGGTTTGAAGAGAGAGTTGAAGGAATGGGGTTTGTTATGTGTTCTGACGAGGAAGGAGTGGATGACCCTGATGTCAACATATTGAATTTTCCTAATGAACCATCCATTGAGATTCGACTACTTGAAGGGGGGATTCAACAAAATCTGATAAAAAGCAGCCTAACCAAAGAGATGCAGTCGAGGAACTGA
Protein sequence

>Msa0068830

MVPSFLASSHLREPVVELMQSLSSVFKRVVVIHDSLMASVVQDAKNIENVENYSFLSTCAFTIFTSIWEKVGKPPIESSHIIDVPSMEDGCFTAEISDFFNAQKEFYALSDGSIYNTSRVIESPYLELIERITCSKKHWAVGPFNPLTIEKKKDSKSRHSCMEWLDKQEPNSVIYVSFGTTTTLTDEEIEQIATGLEQSKIKFIWVLRDADKGDIFDGNEGKRGELAKGFEERVEGMGFVMCSDEEGVDDPDVNILNFPNEPSIEIRLLEGGIQQNLIKSSLTKEMQSRN*