AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0113870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113870 MtrunA17_Chr1g0173121 94.194 465 26 1 1 465 1 464 0.0 889
Msa0113870 MtrunA17_Chr1g0159551 86.481 466 57 3 1 465 1 461 0.0 819
Msa0113870 MtrunA17_Chr8g0382021 67.965 462 141 5 10 465 30 490 0.0 633
Msa0113870 MtrunA17_Chr7g0232411 31.692 467 266 15 15 449 7 452 1.40e-56 194
Msa0113870 MtrunA17_Chr5g0440421 31.187 497 284 18 15 465 11 495 2.49e-56 194
Msa0113870 MtrunA17_Chr4g0044511 30.864 486 271 16 15 460 41 501 6.65e-55 191
Msa0113870 MtrunA17_Chr7g0275511 30.769 481 270 16 9 452 10 464 1.66e-54 189
Msa0113870 MtrunA17_Chr6g0449931 30.462 476 275 14 15 456 7 460 1.71e-54 189
Msa0113870 MtrunA17_Chr7g0243931 31.992 497 270 20 2 452 5 479 5.69e-54 188
Msa0113870 MtrunA17_Chr7g0232391 30.835 467 275 15 15 452 7 454 5.82e-54 187
Msa0113870 MtrunA17_Chr6g0464871 29.006 493 279 17 6 465 14 468 8.27e-54 187
Msa0113870 MtrunA17_Chr8g0347271 30.932 472 273 14 14 456 19 466 3.03e-53 186
Msa0113870 MtrunA17_Chr7g0243681 30.309 485 277 17 8 452 5 468 5.95e-53 185
Msa0113870 MtrunA17_Chr7g0232341 30.508 413 252 11 77 461 58 463 9.38e-53 184
Msa0113870 MtrunA17_Chr7g0232331 29.375 480 283 15 15 461 7 463 1.41e-52 184
Msa0113870 MtrunA17_Chr7g0243801 30.515 485 269 16 12 452 5 465 2.28e-52 184
Msa0113870 MtrunA17_Chr5g0426431 29.352 494 287 19 9 463 7 477 2.95e-52 183
Msa0113870 MtrunA17_Chr8g0347281 30.444 473 274 14 14 456 18 465 2.96e-52 183
Msa0113870 MtrunA17_Chr8g0334861 30.445 427 251 14 66 465 58 465 4.13e-52 182
Msa0113870 MtrunA17_Chr8g0366391 28.398 493 294 14 7 460 2 474 4.92e-52 182
Msa0113870 MtrunA17_Chr7g0243771 29.652 489 272 16 10 452 2 464 6.23e-52 182
Msa0113870 MtrunA17_Chr6g0486251 28.270 474 301 11 10 459 2 460 7.38e-52 181
Msa0113870 MtrunA17_Chr6g0486201 28.270 474 301 11 10 459 2 460 7.38e-52 181
Msa0113870 MtrunA17_Chr3g0078841 28.513 491 283 17 16 463 12 477 8.05e-52 182
Msa0113870 MtrunA17_Chr7g0265051 28.571 490 296 16 16 465 11 486 1.34e-51 182
Msa0113870 MtrunA17_Chr8g0373301 39.394 264 140 6 199 452 202 455 2.21e-51 181
Msa0113870 MtrunA17_Chr8g0336651 29.677 465 286 10 15 452 782 1232 3.09e-51 187
Msa0113870 MtrunA17_Chr8g0336651 32.249 369 228 8 96 450 91 451 1.20e-47 176
Msa0113870 MtrunA17_Chr8g0336651 35.200 250 132 4 204 452 543 763 5.18e-40 154
Msa0113870 MtrunA17_Chr6g0462551 28.747 487 290 17 14 464 4 469 3.24e-51 180
Msa0113870 MtrunA17_Chr4g0066151 38.194 288 158 9 191 460 191 476 3.32e-51 180
Msa0113870 MtrunA17_Chr7g0232311 30.786 471 286 9 15 461 7 461 3.63e-51 180
Msa0113870 MtrunA17_Chr7g0243951 30.738 488 275 19 8 452 5 472 4.12e-51 180
Msa0113870 MtrunA17_Chr4g0060511 30.185 487 283 15 8 452 5 476 4.27e-51 180
Msa0113870 MtrunA17_Chr7g0243871 37.542 301 167 8 173 460 177 469 5.03e-51 180
Msa0113870 MtrunA17_Chr6g0459311 27.859 481 308 11 3 459 2 467 5.58e-51 179
Msa0113870 MtrunA17_Chr4g0014061 29.980 497 266 19 15 463 10 472 7.55e-51 179
Msa0113870 MtrunA17_Chr7g0275681 29.752 484 287 15 16 463 14 480 1.93e-50 178
Msa0113870 MtrunA17_Chr3g0118671 25.051 495 301 14 15 465 7 475 2.81e-50 177
Msa0113870 MtrunA17_Chr6g0454401 28.974 497 278 17 15 463 11 480 5.23e-50 177
Msa0113870 MtrunA17_Chr7g0265141 30.223 493 285 16 11 460 6 482 7.34e-50 177
Msa0113870 MtrunA17_Chr4g0066131 36.177 293 167 9 191 465 186 476 1.16e-49 176
Msa0113870 MtrunA17_Chr8g0336691 31.330 466 275 15 15 452 920 1368 1.19e-49 182
Msa0113870 MtrunA17_Chr8g0336691 29.474 475 297 13 1 452 3 462 1.07e-48 179
Msa0113870 MtrunA17_Chr8g0336691 28.228 457 273 11 15 452 481 901 1.03e-42 162
Msa0113870 MtrunA17_Chr8g0361371 27.066 484 301 14 10 460 3 467 1.51e-49 176
Msa0113870 MtrunA17_Chr4g0066281 28.423 482 282 17 18 465 16 468 2.58e-49 175
Msa0113870 MtrunA17_Chr7g0265101 28.169 497 299 17 12 465 7 488 2.98e-49 176
Msa0113870 MtrunA17_Chr4g0044521 34.884 301 172 9 177 460 170 463 3.47e-49 174
Msa0113870 MtrunA17_Chr8g0339631 37.410 278 152 7 195 459 196 464 3.48e-49 175
Msa0113870 MtrunA17_Chr4g0066221 30.453 486 272 19 18 460 15 477 3.55e-49 175
Msa0113870 MtrunA17_Chr6g0464861 27.708 480 280 16 16 465 13 455 4.40e-49 174
Msa0113870 MtrunA17_Chr6g0464841 28.195 493 283 17 6 465 2 456 5.81e-49 174
Msa0113870 MtrunA17_Chr7g0243861 29.541 501 279 17 1 452 1 476 8.13e-49 174
Msa0113870 MtrunA17_Chr8g0339451 40.083 242 134 3 231 464 226 464 1.27e-48 173
Msa0113870 MtrunA17_Chr2g0278711 27.664 488 289 18 16 463 13 476 1.32e-48 173
Msa0113870 MtrunA17_Chr8g0336741 30.277 469 285 15 11 453 10 462 1.33e-48 173
Msa0113870 MtrunA17_Chr1g0153451 29.654 462 287 11 15 453 7 453 1.36e-48 173
Msa0113870 MtrunA17_Chr8g0339441 42.180 211 112 2 257 459 217 425 1.37e-48 172
Msa0113870 MtrunA17_Chr7g0265041 34.589 292 169 7 191 465 204 490 1.47e-48 173
Msa0113870 MtrunA17_Chr6g0464881 29.449 472 286 16 10 460 6 451 3.51e-48 172
Msa0113870 MtrunA17_Chr4g0044501 33.101 287 172 7 184 460 196 472 4.32e-48 172
Msa0113870 MtrunA17_Chr3g0112761 28.998 469 285 13 15 463 9 449 5.31e-48 171
Msa0113870 MtrunA17_Chr6g0463861 28.690 481 290 18 18 465 15 475 6.56e-48 171
Msa0113870 MtrunA17_Chr8g0336331 27.607 489 289 16 16 463 12 476 7.46e-48 171
Msa0113870 MtrunA17_Chr7g0243781 29.583 480 277 16 12 452 7 464 8.16e-48 171
Msa0113870 MtrunA17_Chr8g0339461 39.662 237 132 3 231 459 234 467 1.00e-47 171
Msa0113870 MtrunA17_Chr7g0243851 30.444 473 255 19 8 452 5 431 1.21e-47 170
Msa0113870 MtrunA17_Chr7g0265151 34.589 292 165 8 194 465 200 485 1.26e-47 171
Msa0113870 MtrunA17_Chr7g0235051 29.325 474 270 17 8 452 5 442 1.31e-47 170
Msa0113870 MtrunA17_Chr7g0243631 29.098 488 278 18 11 452 10 475 1.48e-47 171
Msa0113870 MtrunA17_Chr5g0423981 27.601 471 280 15 16 463 12 444 1.50e-47 169
Msa0113870 MtrunA17_Chr7g0232401 35.016 317 182 8 154 459 160 463 2.06e-47 170
Msa0113870 MtrunA17_Chr4g0066261 36.082 291 163 10 194 465 197 483 2.30e-47 170
Msa0113870 MtrunA17_Chr3g0118711 25.558 493 297 15 15 463 14 480 2.63e-47 170
Msa0113870 MtrunA17_Chr3g0118771 25.720 486 305 14 15 463 22 488 2.77e-47 170
Msa0113870 MtrunA17_Chr6g0462531 26.834 477 296 15 15 459 5 460 3.11e-47 169
Msa0113870 MtrunA17_Chr8g0339601 37.778 270 147 5 195 450 55 317 3.43e-47 166
Msa0113870 MtrunA17_Chr8g0369341 29.184 490 283 19 9 460 2 465 3.68e-47 169
Msa0113870 MtrunA17_Chr6g0454331 27.088 491 294 15 16 463 9 478 4.18e-47 169
Msa0113870 MtrunA17_Chr6g0462571 27.655 499 277 17 14 464 4 466 5.93e-47 169
Msa0113870 MtrunA17_Chr5g0419761 28.330 473 289 15 16 449 11 472 7.39e-47 169
Msa0113870 MtrunA17_Chr6g0453961 26.337 505 297 14 7 463 12 489 7.39e-47 169
Msa0113870 MtrunA17_Chr6g0463851 34.982 283 155 9 209 465 205 484 7.48e-47 169
Msa0113870 MtrunA17_Chr6g0453951 26.854 499 283 16 16 463 59 526 8.20e-47 169
Msa0113870 MtrunA17_Chr3g0092641 27.745 501 286 19 9 463 7 477 8.66e-47 168
Msa0113870 MtrunA17_Chr8g0334851 30.688 378 225 11 111 461 99 466 9.72e-47 168
Msa0113870 MtrunA17_Chr8g0374941 28.157 483 298 15 17 465 952 1419 1.37e-46 173
Msa0113870 MtrunA17_Chr8g0374941 28.632 468 283 14 17 449 14 465 9.50e-43 162
Msa0113870 MtrunA17_Chr8g0374941 30.323 465 271 18 17 445 479 926 7.17e-39 150
Msa0113870 MtrunA17_Chr5g0412111 29.132 484 280 14 15 463 6 461 1.42e-46 167
Msa0113870 MtrunA17_Chr2g0294941 37.805 246 136 7 229 458 130 374 1.43e-46 165
Msa0113870 MtrunA17_Chr5g0401721 27.475 495 292 17 9 463 3 470 1.51e-46 167
Msa0113870 MtrunA17_Chr6g0454341 26.531 490 296 16 15 463 11 477 1.66e-46 167
Msa0113870 MtrunA17_Chr8g0336731 30.563 373 236 9 96 453 117 481 1.92e-46 168
Msa0113870 MtrunA17_Chr6g0454361 26.869 495 290 16 15 463 12 480 2.63e-46 167
Msa0113870 MtrunA17_Chr6g0454291 26.994 489 295 14 16 463 9 476 2.67e-46 167
Msa0113870 MtrunA17_Chr3g0118701 25.410 488 304 15 15 463 16 482 2.72e-46 167
Msa0113870 MtrunA17_Chr8g0335141 34.628 309 189 8 162 463 166 468 3.07e-46 167
Msa0113870 MtrunA17_Chr7g0218311 36.458 288 158 9 201 465 200 485 3.64e-46 167
Msa0113870 MtrunA17_Chr4g0011051 26.572 493 305 16 16 465 11 489 5.61e-46 166
Msa0113870 MtrunA17_Chr8g0374901 29.461 482 291 17 17 465 15 480 7.17e-46 166
Msa0113870 MtrunA17_Chr3g0079731 33.577 274 167 5 201 460 205 477 9.04e-46 166
Msa0113870 MtrunA17_Chr3g0118691 26.434 488 299 17 15 463 16 482 9.25e-46 166
Msa0113870 MtrunA17_Chr6g0454131 27.613 507 286 17 7 463 3 478 1.28e-45 165
Msa0113870 MtrunA17_Chr2g0302961 27.521 476 306 14 15 465 6 467 2.07e-45 164
Msa0113870 MtrunA17_Chr8g0335161 35.249 261 159 4 204 459 207 462 2.09e-45 164
Msa0113870 MtrunA17_Chr5g0426401 37.121 264 141 7 210 463 62 310 2.95e-45 160
Msa0113870 MtrunA17_Chr8g0334831 26.559 497 296 17 10 460 2 475 3.10e-45 164
Msa0113870 MtrunA17_Chr4g0066201 29.095 464 294 14 18 460 22 471 3.39e-45 164
Msa0113870 MtrunA17_Chr6g0454261 25.866 491 300 13 15 463 11 479 3.91e-45 164
Msa0113870 MtrunA17_Chr6g0454181 25.904 498 307 13 7 463 3 479 4.02e-45 164
Msa0113870 MtrunA17_Chr8g0374931 37.549 253 141 7 229 465 232 483 4.63e-45 164
Msa0113870 MtrunA17_Chr6g0462521 26.452 465 299 13 15 459 5 446 4.71e-45 163
Msa0113870 MtrunA17_Chr7g0217881 27.766 479 286 15 16 463 12 461 4.95e-45 163
Msa0113870 MtrunA17_Chr5g0419771 28.032 503 281 20 15 463 37 512 7.45e-45 164
Msa0113870 MtrunA17_Chr3g0118661 26.834 477 288 13 15 452 14 468 1.37e-44 162
Msa0113870 MtrunA17_Chr2g0294921 35.517 290 159 10 201 465 346 632 1.49e-44 165
Msa0113870 MtrunA17_Chr2g0302991 28.111 434 254 15 64 465 57 464 1.74e-44 162
Msa0113870 MtrunA17_Chr6g0462541 27.349 479 286 17 14 456 4 456 2.09e-44 162
Msa0113870 MtrunA17_Chr1g0153461 39.810 211 119 4 257 462 3 210 2.29e-44 155
Msa0113870 MtrunA17_Chr4g0050341 27.419 496 288 19 15 463 20 490 2.40e-44 162
Msa0113870 MtrunA17_Chr6g0454221 37.559 213 115 4 248 460 33 227 3.74e-44 157
Msa0113870 MtrunA17_Chr6g0464921 27.386 482 300 15 6 464 2 456 4.00e-44 160
Msa0113870 MtrunA17_Chr6g0454151 27.038 503 277 16 15 463 11 477 4.24e-44 161
Msa0113870 MtrunA17_Chr7g0241781 27.051 451 292 13 15 463 10 425 4.56e-44 160
Msa0113870 MtrunA17_Chr6g0454191 26.104 498 307 13 7 463 3 480 5.20e-44 161
Msa0113870 MtrunA17_Chr6g0454211 26.531 490 298 13 15 463 298 766 7.12e-44 164
Msa0113870 MtrunA17_Chr6g0454211 29.302 215 101 6 170 374 62 235 1.23e-16 82.8
Msa0113870 MtrunA17_Chr6g0454121 38.889 216 114 4 248 463 281 478 1.55e-43 159
Msa0113870 MtrunA17_Chr5g0428081 36.759 253 143 7 229 465 230 481 2.52e-43 159
Msa0113870 MtrunA17_Chr6g0454301 26.531 490 294 16 16 463 265 730 3.13e-43 162
Msa0113870 MtrunA17_Chr6g0454301 35.065 231 118 5 248 464 32 244 3.05e-36 142
Msa0113870 MtrunA17_Chr6g0454321 25.988 481 286 14 16 452 12 466 3.15e-43 161
Msa0113870 MtrunA17_Chr6g0454271 36.574 216 119 4 248 463 89 286 3.48e-43 154
Msa0113870 MtrunA17_Chr1g0179901 26.939 490 304 17 15 463 17 493 4.04e-43 159
Msa0113870 MtrunA17_Chr5g0442541 28.395 486 285 19 15 463 6 465 4.04e-43 158
Msa0113870 MtrunA17_Chr3g0112771 28.750 480 270 16 15 463 13 451 4.95e-43 157
Msa0113870 MtrunA17_Chr4g0044481 38.426 216 117 5 192 400 193 399 6.90e-43 156
Msa0113870 MtrunA17_Chr5g0420801 27.673 477 297 17 9 460 2 455 7.03e-43 157
Msa0113870 MtrunA17_Chr4g0032331 28.256 453 277 16 15 446 9 434 8.31e-43 157
Msa0113870 MtrunA17_Chr2g0294931 36.765 272 154 8 210 465 214 483 1.08e-42 157
Msa0113870 MtrunA17_Chr8g0359821 26.434 488 297 16 16 463 12 477 1.36e-42 157
Msa0113870 MtrunA17_Chr5g0410941 35.294 289 161 9 201 465 205 491 1.40e-42 157
Msa0113870 MtrunA17_Chr4g0053501 25.726 482 306 13 10 463 7 464 3.04e-42 156
Msa0113870 MtrunA17_Chr5g0414331 26.585 489 280 17 11 464 10 454 3.33e-42 155
Msa0113870 MtrunA17_Chr8g0350881 28.831 496 282 17 15 465 13 482 3.93e-42 156
Msa0113870 MtrunA17_Chr4g0066171 35.628 247 141 6 229 460 230 473 7.69e-42 155
Msa0113870 MtrunA17_Chr4g0053321 32.374 278 167 7 200 463 209 479 1.62e-41 154
Msa0113870 MtrunA17_Chr5g0414321 25.761 493 287 16 6 463 3 451 1.78e-41 154
Msa0113870 MtrunA17_Chr5g0442561 27.664 488 293 18 15 463 6 472 2.22e-41 153
Msa0113870 MtrunA17_Chr7g0241801 27.523 436 263 14 15 438 10 404 2.37e-41 152
Msa0113870 MtrunA17_Chr5g0403641 38.498 213 121 3 237 439 266 478 4.68e-41 153
Msa0113870 MtrunA17_Chr8g0374971 27.479 484 304 15 15 465 13 482 6.21e-41 152
Msa0113870 MtrunA17_Chr2g0307961 26.804 485 291 15 15 464 14 469 7.40e-41 152
Msa0113870 MtrunA17_Chr5g0412101 27.823 496 291 17 6 463 4 470 9.53e-41 152
Msa0113870 MtrunA17_Chr7g0243611 36.475 244 130 7 189 421 63 292 1.11e-40 147
Msa0113870 MtrunA17_Chr6g0454201 32.700 263 152 5 210 463 234 480 1.77e-40 151
Msa0113870 MtrunA17_Chr5g0442601 26.598 485 306 15 15 463 405 875 2.16e-40 154
Msa0113870 MtrunA17_Chr5g0442601 36.898 187 111 4 235 415 165 350 2.13e-29 122
Msa0113870 MtrunA17_Chr6g0452771 33.460 263 150 5 210 463 233 479 2.20e-40 151
Msa0113870 MtrunA17_Chr6g0454141 36.111 216 120 4 248 463 282 479 3.56e-40 150
Msa0113870 MtrunA17_Chr8g0355221 33.942 274 160 7 206 463 218 486 5.81e-40 150
Msa0113870 MtrunA17_Chr5g0431441 28.337 487 271 21 15 463 19 465 6.76e-40 149
Msa0113870 MtrunA17_Chr3g0098111 25.466 483 315 14 9 463 4 469 9.42e-40 149
Msa0113870 MtrunA17_Chr7g0243811 37.885 227 127 5 176 396 155 373 1.21e-39 147
Msa0113870 MtrunA17_Chr4g0072761 38.158 228 122 6 237 464 245 453 1.25e-39 148
Msa0113870 MtrunA17_Chr5g0448521 34.568 243 140 8 235 463 230 467 1.69e-39 148
Msa0113870 MtrunA17_Chr5g0442521 26.489 487 303 17 15 463 6 475 1.71e-39 148
Msa0113870 MtrunA17_Chr7g0243761 27.950 483 282 16 8 460 5 451 1.84e-39 148
Msa0113870 MtrunA17_Chr3g0118721 34.783 207 122 4 257 463 96 289 2.05e-39 144
Msa0113870 MtrunA17_Chr5g0412131 27.530 494 294 15 6 463 4 469 2.34e-39 148
Msa0113870 MtrunA17_Chr5g0442491 27.586 493 289 18 15 463 6 474 3.20e-39 147
Msa0113870 MtrunA17_Chr1g0207981 31.064 235 144 5 237 463 248 472 5.70e-39 147
Msa0113870 MtrunA17_Chr1g0207971 25.306 490 296 16 9 465 3 455 6.36e-39 146
Msa0113870 MtrunA17_Chr7g0265111 27.944 501 306 14 4 463 29 515 6.87e-39 147
Msa0113870 MtrunA17_Chr2g0329111 29.098 488 296 20 15 465 7 481 7.44e-39 147
Msa0113870 MtrunA17_Chr7g0243711 36.735 245 125 7 237 460 78 313 8.79e-39 143
Msa0113870 MtrunA17_Chr7g0249981 25.562 489 284 16 11 463 22 466 1.18e-38 146
Msa0113870 MtrunA17_Chr5g0401851 25.202 496 319 17 6 463 2 483 1.72e-38 145
Msa0113870 MtrunA17_Chr7g0250001 35.885 209 119 4 252 460 251 444 1.75e-38 145
Msa0113870 MtrunA17_Chr8g0370941 33.471 242 132 6 235 452 241 477 2.98e-38 145
Msa0113870 MtrunA17_Chr7g0218791 26.797 459 281 16 16 450 7 434 3.51e-38 144
Msa0113870 MtrunA17_Chr4g0042891 34.749 259 155 6 208 460 212 462 7.34e-38 144
Msa0113870 MtrunA17_Chr8g0365811 26.694 487 306 14 9 463 490 957 1.24e-37 146
Msa0113870 MtrunA17_Chr8g0365811 25.208 480 326 12 9 463 4 475 8.94e-33 132
Msa0113870 MtrunA17_Chr1g0207951 33.810 210 125 2 256 465 915 1110 1.55e-37 146
Msa0113870 MtrunA17_Chr1g0207951 25.673 483 292 14 15 465 125 572 3.78e-36 142
Msa0113870 MtrunA17_Chr1g0207931 25.106 470 284 15 8 465 86 499 2.20e-37 143
Msa0113870 MtrunA17_Chr5g0429711 26.230 488 285 21 15 464 12 462 2.26e-37 142
Msa0113870 MtrunA17_Chr6g0454351 25.852 499 299 16 1 463 1 464 2.65e-37 142
Msa0113870 MtrunA17_Chr5g0442511 32.780 241 145 8 235 463 258 493 3.68e-37 142
Msa0113870 MtrunA17_Chr5g0442581 35.510 245 135 10 235 463 239 476 4.82e-37 142
Msa0113870 MtrunA17_Chr3g0118751 23.975 488 282 14 15 463 7 444 6.58e-37 140
Msa0113870 MtrunA17_Chr4g0042931 34.231 260 159 6 208 460 206 460 1.02e-36 140
Msa0113870 MtrunA17_Chr7g0249931 27.049 488 278 20 9 460 35 480 1.08e-36 140
Msa0113870 MtrunA17_Chr8g0380531 25.767 489 285 18 15 465 11 459 1.13e-36 140
Msa0113870 MtrunA17_Chr8g0377921 26.946 501 272 17 15 463 5 463 1.61e-36 140
Msa0113870 MtrunA17_Chr1g0207831 24.949 493 302 15 10 465 4 465 1.77e-36 140
Msa0113870 MtrunA17_Chr8g0361411 34.981 263 147 7 208 460 202 450 1.80e-36 139
Msa0113870 MtrunA17_Chr5g0431361 27.869 488 268 21 15 464 13 454 6.76e-36 138
Msa0113870 MtrunA17_Chr5g0432731 30.565 301 185 8 170 463 13 296 7.06e-36 134
Msa0113870 MtrunA17_Chr7g0243911 37.811 201 104 5 260 448 24 215 9.68e-36 132
Msa0113870 MtrunA17_Chr5g0431371 27.331 472 288 16 15 464 11 449 1.10e-35 137
Msa0113870 MtrunA17_Chr7g0218821 23.932 468 306 13 16 460 7 447 1.55e-35 137
Msa0113870 MtrunA17_Chr5g0409591 38.021 192 105 3 258 441 275 460 1.79e-35 137
Msa0113870 MtrunA17_Chr6g0454171 30.405 296 164 7 179 463 45 309 3.36e-35 133
Msa0113870 MtrunA17_Chr8g0355011 35.678 199 114 3 265 463 177 361 4.12e-35 134
Msa0113870 MtrunA17_Chr1g0165701 32.491 277 157 8 206 463 218 483 4.25e-35 136
Msa0113870 MtrunA17_Chr8g0377941 36.765 204 113 4 258 460 270 458 5.08e-35 135
Msa0113870 MtrunA17_Chr3g0122001 35.496 262 151 7 216 463 695 952 5.85e-35 139
Msa0113870 MtrunA17_Chr3g0122001 35.094 265 149 7 216 463 215 473 6.64e-34 135
Msa0113870 MtrunA17_Chr7g0249961 33.491 212 126 3 252 463 63 259 8.42e-35 130
Msa0113870 MtrunA17_Chr5g0431401 27.615 478 279 20 15 464 11 449 1.10e-33 132
Msa0113870 MtrunA17_Chr1g0207861 25.820 488 295 14 15 463 9 468 1.44e-33 132
Msa0113870 MtrunA17_Chr7g0218831 31.092 238 134 4 231 461 223 437 5.25e-33 129
Msa0113870 MtrunA17_Chr6g0454251 27.318 399 236 14 16 374 9 393 5.74e-33 129
Msa0113870 MtrunA17_Chr3g0121991 36.073 219 125 5 250 463 337 545 5.75e-33 131
Msa0113870 MtrunA17_Chr7g0232351 29.337 392 224 16 15 374 7 377 6.08e-33 128
Msa0113870 MtrunA17_Chr7g0218811 23.391 466 300 11 16 460 17 446 7.16e-33 129
Msa0113870 MtrunA17_Chr1g0161351 25.988 481 307 12 15 465 38 499 1.24e-32 129
Msa0113870 MtrunA17_Chr8g0357361 33.493 209 113 4 203 402 62 253 1.24e-32 125
Msa0113870 MtrunA17_Chr5g0431421 33.475 236 133 6 235 463 230 448 2.57e-32 128
Msa0113870 MtrunA17_Chr6g0454371 34.595 185 105 4 280 463 1 170 3.59e-32 120
Msa0113870 MtrunA17_Chr4g0072771 26.441 503 275 18 5 464 16 466 3.73e-32 127
Msa0113870 MtrunA17_Chr5g0393591 23.285 481 302 15 4 465 5 437 4.33e-32 127
Msa0113870 MtrunA17_Chr3g0106251 32.701 211 123 4 255 463 100 293 5.08e-32 124
Msa0113870 MtrunA17_Chr6g0463891 31.136 273 161 7 206 460 218 481 5.09e-32 127
Msa0113870 MtrunA17_Chr3g0079711 35.870 184 110 3 284 460 3 185 6.18e-32 120
Msa0113870 MtrunA17_Chr7g0218841 30.672 238 135 4 231 461 224 438 1.20e-31 126
Msa0113870 MtrunA17_Chr3g0106231 32.258 217 128 4 250 464 253 452 5.25e-31 124
Msa0113870 MtrunA17_Chr5g0429681 34.894 235 131 11 235 460 275 496 5.79e-31 125
Msa0113870 MtrunA17_Chr5g0416741 30.403 273 163 7 206 460 217 480 3.41e-30 122
Msa0113870 MtrunA17_Chr5g0448551 33.803 213 116 6 256 465 258 448 1.77e-29 120
Msa0113870 MtrunA17_Chr4g0066141 41.104 163 86 4 308 460 186 348 5.71e-29 117
Msa0113870 MtrunA17_Chr8g0367221 23.861 461 287 11 15 440 13 444 8.89e-28 117
Msa0113870 MtrunA17_Chr8g0367221 33.871 186 108 3 259 440 1547 1721 2.94e-25 109
Msa0113870 MtrunA17_Chr8g0367221 34.615 182 112 4 259 440 1057 1231 6.24e-25 108
Msa0113870 MtrunA17_Chr8g0336251 32.422 256 140 9 217 461 223 456 6.43e-27 112
Msa0113870 MtrunA17_Chr6g0482061 31.364 220 138 6 236 450 255 466 8.18e-27 112
Msa0113870 MtrunA17_Chr8g0336321 32.422 256 140 9 217 461 223 456 8.23e-27 112
Msa0113870 MtrunA17_Chr6g0464091 34.872 195 102 5 203 389 219 396 1.01e-26 112
Msa0113870 MtrunA17_Chr3g0092031 33.708 178 103 4 260 435 6 170 1.05e-26 106
Msa0113870 MtrunA17_Chr5g0416821 30.258 271 154 8 206 460 219 470 1.15e-26 112
Msa0113870 MtrunA17_Chr2g0278721 25.212 472 284 17 7 438 510 952 1.66e-26 113
Msa0113870 MtrunA17_Chr2g0278721 28.413 271 166 8 203 465 214 464 2.19e-25 110
Msa0113870 MtrunA17_Chr2g0302851 34.066 182 103 4 260 438 270 437 6.64e-26 110
Msa0113870 MtrunA17_Chr4g0039881 32.796 186 110 4 260 443 246 418 7.71e-26 109
Msa0113870 MtrunA17_Chr6g0466831 28.916 249 157 6 201 443 210 444 9.76e-26 109
Msa0113870 MtrunA17_Chr5g0431431 24.882 422 229 14 15 428 11 352 1.11e-25 107
Msa0113870 MtrunA17_Chr6g0466841 32.292 192 115 3 201 389 210 389 1.24e-25 109
Msa0113870 MtrunA17_Chr2g0278741 32.778 180 108 3 260 438 356 523 2.96e-25 108
Msa0113870 MtrunA17_Chr4g0069611 28.516 256 150 8 189 435 202 433 3.01e-25 108
Msa0113870 MtrunA17_Chr5g0427571 35.326 184 100 5 254 432 99 268 5.78e-25 104
Msa0113870 MtrunA17_Chr8g0336261 37.500 144 76 3 280 423 1 130 9.42e-25 99.4
Msa0113870 MtrunA17_Chr8g0337381 43.802 121 58 4 335 452 1 114 1.36e-24 99.0
Msa0113870 MtrunA17_Chr6g0454231 30.918 207 93 4 258 463 61 218 1.35e-23 103
Msa0113870 MtrunA17_Chr1g0196851 25.376 465 290 16 2 437 37 473 1.69e-23 103
Msa0113870 MtrunA17_Chr7g0231631 28.413 271 153 8 208 460 9 256 8.81e-23 97.8
Msa0113870 MtrunA17_Chr1g0207881 33.333 132 87 1 334 465 256 386 1.35e-20 93.6
Msa0113870 MtrunA17_Chr4g0040711 31.553 206 132 3 195 400 199 395 1.72e-20 94.0
Msa0113870 MtrunA17_Chr4g0029151 33.862 189 104 5 259 437 264 441 2.31e-20 93.6
Msa0113870 MtrunA17_Chr2g0283041 23.235 439 286 13 15 429 8 419 3.32e-20 92.8
Msa0113870 MtrunA17_Chr4g0029131 29.528 254 151 8 196 437 196 433 9.61e-20 92.4
Msa0113870 MtrunA17_Chr7g0243731 50.746 67 33 0 334 400 7 73 3.84e-19 81.6
Msa0113870 MtrunA17_Chr4g0040691 28.216 241 162 4 195 435 199 428 8.83e-19 88.6
Msa0113870 MtrunA17_Chr2g0319761 26.860 242 162 6 204 442 208 437 1.14e-16 82.0
Msa0113870 MtrunA17_Chr2g0319731 23.922 464 296 15 8 442 19 454 2.30e-15 78.2
Msa0113870 MtrunA17_Chr2g0319801 23.861 461 300 16 8 442 2 437 8.92e-15 76.3
Msa0113870 MtrunA17_Chr7g0243721 34.615 130 71 4 189 309 17 141 6.69e-14 68.9
Msa0113870 MtrunA17_Chr2g0319791 25.417 240 164 6 206 442 210 437 1.09e-13 72.8
Msa0113870 MtrunA17_Chr1g0159561 77.143 35 8 0 431 465 12 46 2.36e-13 64.7
Msa0113870 MtrunA17_Chr2g0319751 25.820 244 166 6 205 445 686 917 3.45e-13 72.0
Msa0113870 MtrunA17_Chr2g0319751 26.721 247 134 8 206 445 210 416 1.45e-12 70.1
Msa0113870 MtrunA17_Chr8g0334841 33.099 142 87 4 170 308 2 138 1.32e-12 65.9
Msa0113870 MtrunA17_Chr6g0454391 35.556 90 58 0 350 439 11 100 4.09e-11 60.5
Msa0113870 MtrunA17_Chr2g0279741 48.276 58 30 0 257 314 33 90 5.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113870 AT2G15490.3 28.454 485 308 12 9 463 2 477 1.17e-55 192
Msa0113870 AT2G15490.1 28.484 488 307 12 9 463 2 480 2.61e-55 192
Msa0113870 AT4G34131.1 28.953 487 292 12 15 464 11 480 3.33e-54 189
Msa0113870 AT2G36780.1 30.223 493 287 18 1 452 1 477 7.06e-54 188
Msa0113870 AT2G15480.1 27.216 485 308 13 12 463 8 480 7.88e-52 182
Msa0113870 AT2G36770.1 29.303 488 298 15 1 452 1 477 1.17e-51 182
Msa0113870 AT1G73880.1 28.600 493 297 17 1 464 1 467 1.78e-50 178
Msa0113870 AT2G31750.1 28.776 490 278 17 10 465 4 456 4.94e-50 177
Msa0113870 AT2G31750.2 28.776 490 278 17 10 465 4 456 1.12e-49 177
Msa0113870 AT2G15480.2 26.667 495 308 15 12 463 8 490 1.20e-49 177
Msa0113870 AT4G34135.1 27.642 492 305 11 5 460 2 478 1.57e-49 176
Msa0113870 AT2G36800.1 27.479 484 283 18 16 452 14 476 3.91e-49 175
Msa0113870 AT3G53160.1 29.375 480 278 17 16 452 10 471 2.15e-48 173
Msa0113870 AT2G36760.1 28.870 478 283 16 16 452 16 477 6.55e-48 172
Msa0113870 AT2G36750.1 28.238 471 294 14 16 452 12 472 2.31e-47 171
Msa0113870 AT5G03490.1 28.238 471 271 15 15 455 20 453 4.27e-47 169
Msa0113870 AT5G26310.1 30.952 378 223 10 112 455 85 458 5.20e-47 169
Msa0113870 AT3G16520.3 27.586 464 305 12 15 460 6 456 8.43e-47 168
Msa0113870 AT3G50740.1 32.743 339 191 10 145 452 130 462 1.35e-46 168
Msa0113870 AT4G01070.1 29.362 470 278 14 15 452 9 456 1.93e-46 167
Msa0113870 AT4G34138.1 33.910 289 159 7 192 464 207 479 2.25e-46 167
Msa0113870 AT5G66690.1 33.036 336 193 9 145 452 125 456 4.06e-46 167
Msa0113870 AT3G11340.1 28.694 467 285 13 14 463 9 444 4.30e-46 166
Msa0113870 AT3G46670.1 38.039 255 143 5 210 463 208 448 5.37e-46 166
Msa0113870 AT1G10400.1 28.099 484 284 18 12 460 5 459 6.84e-46 166
Msa0113870 AT3G16520.2 27.876 452 295 12 15 448 6 444 1.91e-45 164
Msa0113870 AT3G16520.1 27.876 452 295 12 15 448 6 444 2.25e-45 164
Msa0113870 AT1G22340.1 25.813 492 298 14 15 463 14 481 8.09e-45 163
Msa0113870 AT1G51210.1 27.876 452 258 17 15 438 21 432 1.27e-44 162
Msa0113870 AT3G46660.1 29.916 478 272 17 15 465 15 456 1.41e-44 162
Msa0113870 AT1G22360.1 25.966 466 272 15 15 435 11 448 3.00e-44 162
Msa0113870 AT1G07250.1 27.197 478 307 15 15 463 7 472 3.81e-44 161
Msa0113870 AT5G05860.1 28.931 477 286 13 8 463 3 447 3.92e-44 161
Msa0113870 AT4G36770.1 41.784 213 108 5 237 440 235 440 6.32e-44 160
Msa0113870 AT2G29730.1 26.695 472 312 14 13 463 4 462 9.66e-44 160
Msa0113870 AT2G16890.2 27.140 479 302 16 15 465 10 469 1.06e-43 160
Msa0113870 AT2G36790.1 27.721 487 277 19 16 452 15 476 1.66e-43 160
Msa0113870 AT5G14860.1 27.789 493 288 17 16 465 10 477 7.64e-43 158
Msa0113870 AT3G46700.1 36.434 258 144 6 210 463 203 444 8.76e-43 157
Msa0113870 AT4G15490.1 28.427 496 279 19 15 465 9 473 1.09e-42 157
Msa0113870 AT3G46650.1 30.000 450 260 17 15 450 11 419 1.40e-42 156
Msa0113870 AT3G46680.1 36.364 253 144 6 210 460 209 446 1.64e-42 156
Msa0113870 AT5G59590.1 27.902 491 272 18 6 460 2 446 2.39e-42 156
Msa0113870 AT1G22380.1 27.039 466 275 17 15 439 14 455 2.46e-42 157
Msa0113870 AT3G55700.1 33.333 327 182 11 153 463 144 450 3.90e-42 155
Msa0113870 AT1G22370.2 28.112 466 257 16 15 435 14 446 7.29e-42 155
Msa0113870 AT1G78270.1 27.115 461 279 15 16 439 15 455 8.48e-42 155
Msa0113870 AT1G22400.1 26.552 467 273 15 15 437 14 454 8.75e-42 155
Msa0113870 AT3G53150.1 27.677 495 302 16 16 463 24 509 1.26e-41 155
Msa0113870 AT5G38010.1 27.054 499 270 19 6 460 2 450 1.58e-41 154
Msa0113870 AT3G21800.1 26.908 498 299 18 11 465 2 477 2.47e-41 154
Msa0113870 AT2G18570.1 27.815 453 281 14 16 439 7 442 3.96e-41 153
Msa0113870 AT5G59580.1 27.389 471 281 19 15 460 10 444 4.10e-41 152
Msa0113870 AT2G16890.3 28.883 412 248 14 15 400 10 402 1.21e-40 150
Msa0113870 AT3G46690.1 37.255 255 140 6 210 460 208 446 1.24e-40 151
Msa0113870 AT3G21790.1 31.930 285 172 9 195 465 204 480 1.62e-40 152
Msa0113870 AT5G38040.1 34.028 288 163 9 179 460 180 446 1.80e-40 151
Msa0113870 AT2G29740.1 33.218 289 176 9 178 460 194 471 2.16e-40 151
Msa0113870 AT1G05680.1 37.561 205 114 3 257 461 260 450 3.47e-40 150
Msa0113870 AT2G23250.1 27.887 459 295 14 17 463 1 435 7.28e-40 149
Msa0113870 AT2G30140.2 26.360 478 284 16 15 464 14 451 7.52e-40 149
Msa0113870 AT4G15480.1 27.406 478 305 14 9 460 14 475 7.97e-40 150
Msa0113870 AT2G30140.1 26.514 479 283 16 15 464 14 452 1.19e-39 149
Msa0113870 AT2G29710.1 27.406 478 297 20 15 463 6 462 1.70e-39 149
Msa0113870 AT2G43840.2 26.371 474 289 15 15 463 8 446 2.03e-39 148
Msa0113870 AT5G12890.1 28.776 490 283 21 15 460 11 478 2.45e-39 148
Msa0113870 AT1G05675.1 37.561 205 114 3 257 461 260 450 2.45e-39 148
Msa0113870 AT1G07260.1 25.979 485 307 15 10 460 2 468 3.27e-39 148
Msa0113870 AT2G43840.1 26.371 474 289 15 15 463 8 446 3.33e-39 147
Msa0113870 AT2G18560.1 36.842 209 113 4 255 452 165 365 5.20e-39 145
Msa0113870 AT5G05870.1 36.207 232 134 5 235 464 236 455 5.70e-39 147
Msa0113870 AT3G46720.1 37.391 230 122 5 237 463 230 440 6.46e-39 146
Msa0113870 AT1G01390.1 26.282 468 295 12 15 452 9 456 9.09e-39 147
Msa0113870 AT1G01420.1 26.539 471 299 14 15 457 9 460 9.61e-39 147
Msa0113870 AT2G30150.2 27.479 484 275 17 15 465 14 454 1.02e-38 146
Msa0113870 AT1G01420.2 26.539 471 299 14 15 457 12 463 1.07e-38 147
Msa0113870 AT4G15500.1 27.521 476 289 17 15 460 10 459 1.08e-38 146
Msa0113870 AT2G23260.1 26.483 472 297 14 15 464 11 454 1.24e-38 146
Msa0113870 AT1G01390.2 26.667 465 297 11 15 452 26 473 1.38e-38 146
Msa0113870 AT2G31790.1 37.143 210 118 3 256 464 261 457 1.83e-38 145
Msa0113870 AT1G22360.2 24.464 466 267 15 15 435 11 436 2.83e-38 145
Msa0113870 AT3G02100.1 28.049 492 281 16 4 460 3 456 3.47e-38 145
Msa0113870 AT2G30150.1 27.140 479 277 16 18 465 1 438 7.19e-38 144
Msa0113870 AT4G15260.1 31.183 279 177 7 195 463 81 354 9.96e-38 141
Msa0113870 AT1G06000.1 28.112 466 275 16 15 463 11 433 1.03e-37 143
Msa0113870 AT3G21560.1 24.842 475 310 12 15 460 13 469 1.96e-37 143
Msa0113870 AT3G21750.1 33.195 241 145 6 235 464 234 469 1.99e-37 143
Msa0113870 AT3G21760.1 37.759 241 137 7 235 465 245 482 1.99e-37 143
Msa0113870 AT2G29750.1 26.501 483 303 15 15 463 9 473 2.42e-37 143
Msa0113870 AT2G43820.1 33.178 214 129 3 250 463 247 446 3.86e-37 142
Msa0113870 AT2G26480.1 35.448 268 141 9 204 460 196 442 1.66e-36 140
Msa0113870 AT1G05560.1 36.596 235 136 6 236 463 223 451 3.87e-36 139
Msa0113870 AT1G05560.2 36.596 235 136 6 236 463 273 501 5.56e-36 139
Msa0113870 AT5G05880.1 35.714 210 123 4 255 464 252 449 2.53e-35 137
Msa0113870 AT4G15280.2 32.636 239 146 6 235 463 272 505 4.06e-35 137
Msa0113870 AT4G15280.1 32.636 239 146 6 235 463 240 473 4.28e-35 136
Msa0113870 AT1G05530.1 28.333 480 274 14 16 460 7 451 4.96e-35 136
Msa0113870 AT3G55710.1 31.832 333 181 13 155 463 144 454 1.23e-34 135
Msa0113870 AT5G17050.1 35.577 208 117 3 232 439 242 432 1.60e-34 134
Msa0113870 AT1G07240.1 33.210 271 155 10 206 463 218 475 2.52e-34 134
Msa0113870 AT1G24100.1 34.906 212 119 5 257 465 265 460 5.44e-34 133
Msa0113870 AT5G65550.1 29.889 271 173 7 173 442 187 441 2.21e-33 131
Msa0113870 AT5G05900.1 36.842 209 113 4 256 464 259 448 5.22e-33 130
Msa0113870 AT3G21780.1 30.605 281 179 8 195 464 194 469 6.53e-33 130
Msa0113870 AT5G49690.1 27.195 467 285 18 7 448 3 439 7.93e-33 130
Msa0113870 AT4G15550.1 35.398 226 137 6 237 460 252 470 1.11e-32 129
Msa0113870 AT5G05890.1 33.810 210 127 4 255 464 256 453 5.13e-32 127
Msa0113870 AT2G36970.1 31.008 258 164 5 206 463 227 470 3.33e-31 125
Msa0113870 AT1G30530.1 32.374 278 160 8 170 442 175 429 7.50e-31 124
Msa0113870 AT1G22370.1 30.175 285 157 8 170 435 15 276 1.94e-30 120
Msa0113870 AT5G17040.2 33.333 210 121 4 232 439 121 313 1.09e-28 116
Msa0113870 AT5G17040.1 33.333 210 121 4 232 439 223 415 1.40e-28 117
Msa0113870 AT5G17030.1 33.333 210 121 4 232 439 239 431 2.06e-28 117
Msa0113870 AT2G28080.1 26.271 472 294 18 18 460 22 468 2.20e-27 114
Msa0113870 AT3G22250.1 32.558 215 118 6 241 447 257 452 3.14e-27 114
Msa0113870 AT4G14090.1 25.840 476 302 18 7 460 6 452 3.18e-26 111
Msa0113870 AT2G22590.1 25.813 492 281 19 15 463 16 466 2.04e-25 108
Msa0113870 AT5G37950.2 45.000 120 59 4 255 374 224 336 1.17e-24 105
Msa0113870 AT5G37950.1 45.000 120 59 4 255 374 230 342 1.29e-24 105
Msa0113870 AT4G27570.1 30.579 242 150 6 206 443 200 427 1.53e-24 106
Msa0113870 AT4G27560.1 29.344 259 161 7 206 460 200 440 2.06e-23 102
Msa0113870 AT1G64910.1 30.180 222 133 5 212 421 200 411 1.20e-21 97.4
Msa0113870 AT5G54060.1 23.566 488 314 17 1 459 1 458 1.26e-20 94.7
Msa0113870 AT1G50580.1 24.717 441 291 15 16 442 8 421 1.28e-20 94.4
Msa0113870 AT5G53990.1 28.205 234 150 6 213 442 201 420 5.25e-20 92.8
Msa0113870 AT3G29630.1 28.936 235 150 6 213 442 201 423 9.08e-20 92.0
Msa0113870 AT5G54010.1 28.085 235 151 6 212 442 206 426 5.57e-19 89.7
Msa0113870 AT3G29630.2 30.319 188 116 4 260 442 220 397 8.60e-19 89.0
Msa0113870 AT4G34135.2 23.939 330 216 8 5 304 2 326 4.43e-17 82.8
Msa0113870 AT1G64920.1 28.750 240 149 7 212 443 200 425 5.69e-17 83.6
Msa0113870 AT2G22930.1 24.576 236 160 5 212 443 200 421 2.11e-14 75.5
Msa0113870 AT4G09500.2 24.359 234 163 5 212 443 200 421 2.54e-13 72.0
Msa0113870 AT4G09500.1 25.946 185 127 3 260 442 219 395 3.78e-13 71.6
Msa0113870 AT4G01070.2 30.000 140 80 3 181 304 168 305 2.34e-11 65.5

Find 114 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACATATATAACTGAATT+TGG 0.191304 1_3:+29974672 None:intergenic
TATTATTGATGTTCCTTCTA+TGG 0.206414 1_3:-29974940 Msa0113870:CDS
AAAGCAAGATAAAGTTCATT+TGG 0.300854 1_3:-29974587 Msa0113870:CDS
TCAGTTATATATGTATCTTT+TGG 0.303540 1_3:-29974666 Msa0113870:CDS
TGGATGTTTGAAATGGAGTT+TGG 0.309843 1_3:+29975278 None:intergenic
AAATGCTATTGCTATGTCTA+TGG 0.315928 1_3:-29974151 Msa0113870:CDS
GAAATTGAACAGATTGCAAC+TGG 0.321867 1_3:-29974618 Msa0113870:CDS
TGGGGTTTGTTGTGAGAGAT+TGG 0.327888 1_3:-29974470 Msa0113870:CDS
GAACTTTGAAGTGATGAAAA+TGG 0.343793 1_3:+29975258 None:intergenic
AAACAAATTTCCTTCTCATA+TGG 0.344813 1_3:-29975198 Msa0113870:CDS
GAAGAGAGAGTCGAAGGAAT+GGG 0.349553 1_3:-29974489 Msa0113870:CDS
GTTATGAAAACACAGTTTCT+TGG 0.362092 1_3:+29974318 None:intergenic
CGGAGTTTCTCGTATGGAAA+TGG 0.376259 1_3:-29974121 Msa0113870:CDS
TTCTTCTTCTCAATGGTAAG+AGG 0.385858 1_3:+29974744 None:intergenic
TTCTCTATCAACTCCAAGTA+AGG 0.388992 1_3:+29974810 None:intergenic
TTCAATTTCTTCATCTGTCA+AGG 0.395467 1_3:+29974632 None:intergenic
CCAACCTTGGACACGATTTG+TGG 0.397459 1_3:+29975304 None:intergenic
TGCATAGGCCATGCTGCTAT+TGG 0.399298 1_3:+29974351 None:intergenic
TGAATCTTTCTTCTTCTCAA+TGG 0.406758 1_3:+29974737 None:intergenic
AAGCAAGATAAAGTTCATTT+GGG 0.407817 1_3:-29974586 Msa0113870:CDS
ATAACACAAGTGTTAAAGAT+TGG 0.408364 1_3:-29974300 Msa0113870:CDS
TTGGTTTGGTTGTGATGGAT+TGG 0.410463 1_3:-29974281 Msa0113870:CDS
ATATTGAGAATGTTGTTAGA+AGG 0.414109 1_3:-29974227 Msa0113870:CDS
GACATATTTGATGGAAATGA+AGG 0.416310 1_3:-29974540 Msa0113870:CDS
TACTTTAGAGAGCATTTCAA+TGG 0.416904 1_3:-29974379 Msa0113870:CDS
CTCAATGGTAAGAGGGTTGA+AGG 0.419504 1_3:+29974752 None:intergenic
TGGTTTGGTTGTGATGGATT+GGG 0.419694 1_3:-29974280 Msa0113870:CDS
CACTTCCATTTGGGAGAAAG+TGG 0.420202 1_3:-29974988 Msa0113870:CDS
GAATGTTGTTAGAAGGTTGA+TGG 0.422088 1_3:-29974220 Msa0113870:CDS
ATGAAAATGGATGTTTGAAA+TGG 0.430739 1_3:+29975271 None:intergenic
TGAAGAGAGAGTCGAAGGAA+TGG 0.432628 1_3:-29974490 Msa0113870:CDS
GATAAAGGAGACATATTTGA+TGG 0.433480 1_3:-29974549 Msa0113870:CDS
ACAAGTGTTAAAGATTGGTT+TGG 0.437278 1_3:-29974295 Msa0113870:CDS
CTCATAAACCCTCCTGTTGA+AGG 0.439840 1_3:+29974420 None:intergenic
AAGCATCCATCCTCCATAGA+AGG 0.444404 1_3:+29974927 None:intergenic
AGTCATTGAAAGTCCTTACT+TGG 0.449851 1_3:-29974823 Msa0113870:CDS
CACAAATCGTGTCCAAGGTT+GGG 0.450663 1_3:-29975303 Msa0113870:CDS
ATTCTAAGCCACCCTTCAAC+AGG 0.453025 1_3:-29974432 Msa0113870:CDS
GGTGGCTTAGAATTTCCAAC+TGG 0.456955 1_3:+29974442 None:intergenic
TGATTCAAATGGCCTTGTGC+TGG 0.461900 1_3:+29975407 None:intergenic
TGTGAAGAGGCTAGAAAAGA+AGG 0.463650 1_3:+29975173 None:intergenic
TGTGATTCATGATAGTCTAA+TGG 0.466885 1_3:-29975090 Msa0113870:CDS
TCACTTGCAGTAAGAAGCAT+TGG 0.474174 1_3:-29974785 Msa0113870:CDS
TCTGCATTTGGGTTAGGAGG+AGG 0.476547 1_3:+29975221 None:intergenic
AGTGTAGAAGTTGATTCAAA+TGG 0.477475 1_3:+29975396 None:intergenic
CCACAAATCGTGTCCAAGGT+TGG 0.487605 1_3:-29975304 Msa0113870:CDS
ACTTTAGAGAGCATTTCAAT+GGG 0.492782 1_3:-29974378 Msa0113870:CDS
TGAAAACACAGTTTCTTGGC+TGG 0.493749 1_3:+29974322 None:intergenic
GAAGTGCCAACATAGTGAAC+AGG 0.494136 1_3:+29975344 None:intergenic
TCTTCTTCTCAATGGTAAGA+GGG 0.495022 1_3:+29974745 None:intergenic
GGGGTTTGTTGTGAGAGATT+GGG 0.496692 1_3:-29974469 Msa0113870:CDS
GGGTTTGAAGAGAGAGTCGA+AGG 0.497377 1_3:-29974495 Msa0113870:CDS
TGTGGCTTGACGGTTGTGTA+TGG 0.498480 1_3:+29975322 None:intergenic
AAAAGAGGTGAACTTGCAAA+AGG 0.500030 1_3:-29974516 Msa0113870:CDS
AAGAGAGAGTCGAAGGAATG+GGG 0.502112 1_3:-29974488 Msa0113870:CDS
AACATACCTGTTCACTATGT+TGG 0.503982 1_3:-29975350 Msa0113870:CDS
CAGTAAGAAGCATTGGGCAG+TGG 0.505058 1_3:-29974778 Msa0113870:CDS
TTGGGCTAAAAGACATGAGT+TGG 0.507135 1_3:-29974262 Msa0113870:CDS
TGAACAGATTGCAACTGGGT+TGG 0.509228 1_3:-29974613 Msa0113870:CDS
GGACACGATTTGTGGCTTGA+CGG 0.509244 1_3:+29975312 None:intergenic
TGAGAAGAAGAAAGATTCAA+AGG 0.511117 1_3:-29974733 Msa0113870:CDS
AAACCAAGTGGTGGTTATTG+TGG 0.512648 1_3:-29975438 Msa0113870:CDS
AAAGATTGGTTTGGTTGTGA+TGG 0.513574 1_3:-29974286 Msa0113870:CDS
TGGAGTTTGGATCCCAACCT+TGG 0.514412 1_3:+29975291 None:intergenic
GTGTTGAGAGATGCTGATAA+AGG 0.522956 1_3:-29974564 Msa0113870:CDS
GAGAGATTGGGCACCCCAGT+TGG 0.524518 1_3:-29974457 Msa0113870:CDS
GAGAAGAAGAAAGATTCAAA+GGG 0.527233 1_3:-29974732 Msa0113870:CDS
GAATTCTATGCATTAAGTGA+TGG 0.537800 1_3:-29974867 Msa0113870:CDS
TTAGGAGGAGGTGAAACAAA+GGG 0.545800 1_3:+29975233 None:intergenic
ATAATATGCGAGCTTTCAAT+CGG 0.549850 1_3:+29974957 None:intergenic
GATGGAAATGAAGGGAAAAG+AGG 0.550269 1_3:-29974531 Msa0113870:CDS
GGTTTATGAGTCATTGTGGA+TGG 0.552414 1_3:-29974407 Msa0113870:CDS
AATTCTATGCATTAAGTGAT+GGG 0.555471 1_3:-29974866 Msa0113870:CDS
TAGAAGGTTGATGGATACAA+AGG 0.557592 1_3:-29974211 Msa0113870:CDS
GTTAGGAGGAGGTGAAACAA+AGG 0.561610 1_3:+29975232 None:intergenic
AAATGGCCTTGTGCTGGGAA+AGG 0.563121 1_3:+29975413 None:intergenic
TGAAGGCGGAGTTTCTCGTA+TGG 0.566340 1_3:-29974127 Msa0113870:CDS
GATTCAAATGGCCTTGTGCT+GGG 0.566341 1_3:+29975408 None:intergenic
CACTTGCAGTAAGAAGCATT+GGG 0.567603 1_3:-29974784 Msa0113870:CDS
AGTAAGAAGCATTGGGCAGT+GGG 0.570505 1_3:-29974777 Msa0113870:CDS
ATTGCTATGTCTATGGATGA+AGG 0.578614 1_3:-29974144 Msa0113870:CDS
ATATGCGAGCTTTCAATCGG+AGG 0.580434 1_3:+29974960 None:intergenic
GATGTTCCTTCTATGGAGGA+TGG 0.581305 1_3:-29974933 Msa0113870:CDS
AAAGAAGGAACCATATGAGA+AGG 0.581429 1_3:+29975188 None:intergenic
AGAAGAAAGATTCAAAGGGT+AGG 0.582116 1_3:-29974728 Msa0113870:CDS
CAAGCCACAAATCGTGTCCA+AGG 0.586173 1_3:-29975308 Msa0113870:CDS
TATTGATGTTCCTTCTATGG+AGG 0.586205 1_3:-29974937 Msa0113870:CDS
CTAAGCCACCCTTCAACAGG+AGG 0.589679 1_3:-29974429 Msa0113870:CDS
ACTTCCATTTGGGAGAAAGT+GGG 0.590924 1_3:-29974987 Msa0113870:CDS
AAAGAGGTGAACTTGCAAAA+GGG 0.594152 1_3:-29974515 Msa0113870:CDS
CTTGGCTGGTCAGAATGCAT+AGG 0.594768 1_3:+29974336 None:intergenic
GTGGTACCTTTCCCAGCACA+AGG 0.595372 1_3:-29975419 Msa0113870:CDS
AAAGGGTAGGCATTCATGCA+TGG 0.596424 1_3:-29974715 Msa0113870:CDS
TGATAGTCTAATGGCATCAG+TGG 0.597756 1_3:-29975081 Msa0113870:CDS
TTTAGAGAGCATTTCAATGG+GGG 0.598140 1_3:-29974376 Msa0113870:CDS
TCATAAACCCTCCTGTTGAA+GGG 0.598229 1_3:+29974421 None:intergenic
GTAGGCATTCATGCATGGAA+TGG 0.601849 1_3:-29974710 Msa0113870:CDS
AGCTCACCAATGGCTTCCAA+TGG 0.605157 1_3:-29975476 None:intergenic
TTCACATCTTCGTGAGCCAG+TGG 0.606950 1_3:-29975156 Msa0113870:CDS
GGAGGGTTTATGAGTCATTG+TGG 0.608894 1_3:-29974411 Msa0113870:CDS
ACATATTTGATGGAAATGAA+GGG 0.609450 1_3:-29974539 Msa0113870:CDS
AGGTTGATGGATACAAAGGA+AGG 0.624480 1_3:-29974207 Msa0113870:CDS
TAAGCCACCCTTCAACAGGA+GGG 0.627491 1_3:-29974428 Msa0113870:CDS
TAAACCCTCCTGTTGAAGGG+TGG 0.642797 1_3:+29974424 None:intergenic
GATTGCATGAGTTCTACCAC+TGG 0.642870 1_3:+29975140 None:intergenic
GTACCACAATAACCACCACT+TGG 0.645127 1_3:+29975435 None:intergenic
TCAATGGTAAGAGGGTTGAA+GGG 0.646857 1_3:+29974753 None:intergenic
TGGCTCACGAAGATGTGAAG+AGG 0.654412 1_3:+29975160 None:intergenic
GTGGCTTAGAATTTCCAACT+GGG 0.655159 1_3:+29974443 None:intergenic
CTTTAGAGAGCATTTCAATG+GGG 0.668610 1_3:-29974377 Msa0113870:CDS
TGGCTTAGAATTTCCAACTG+GGG 0.674557 1_3:+29974444 None:intergenic
AAATTGAACAGATTGCAACT+GGG 0.679302 1_3:-29974617 Msa0113870:CDS
GCTATGTCTATGGATGAAGG+CGG 0.726454 1_3:-29974141 Msa0113870:CDS
GGAGGAGGTGAAACAAAGGG+AGG 0.734329 1_3:+29975236 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATACATATATAACTGAATT+TGG + chr1_3:29974890-29974909 None:intergenic 20.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_3:29974893-29974912 Msa0113870:CDS 20.0%
!! GATACATATATAACTGAATT+TGG + chr1_3:29974890-29974909 None:intergenic 20.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_3:29974893-29974912 Msa0113870:CDS 20.0%
!!! CTTGGTTTTTTGATTTGTTT+TGG + chr1_3:29974109-29974128 None:intergenic 25.0%
! AAACAAATCAAAAAACCAAG+TGG - chr1_3:29974109-29974128 Msa0113870:CDS 25.0%
! ATGAAAATGGATGTTTGAAA+TGG + chr1_3:29974291-29974310 None:intergenic 25.0%
!!! GAAATTTGTTTTCTGCATTT+GGG + chr1_3:29974352-29974371 None:intergenic 25.0%
! AAACAAATTTCCTTCTCATA+TGG - chr1_3:29974361-29974380 Msa0113870:CDS 25.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_3:29974442-29974461 Msa0113870:CDS 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_3:29974561-29974580 Msa0113870:CDS 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_3:29974562-29974581 Msa0113870:CDS 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_3:29974619-29974638 Msa0113870:CDS 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_3:29974693-29974712 Msa0113870:CDS 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_3:29974972-29974991 Msa0113870:CDS 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_3:29974973-29974992 Msa0113870:CDS 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_3:29975020-29975039 Msa0113870:CDS 25.0%
! ATAACACAAGTGTTAAAGAT+TGG - chr1_3:29975259-29975278 Msa0113870:CDS 25.0%
! ATATTGAGAATGTTGTTAGA+AGG - chr1_3:29975332-29975351 Msa0113870:CDS 25.0%
!!! CTTGGTTTTTTGATTTGTTT+TGG + chr1_3:29974109-29974128 None:intergenic 25.0%
! AAACAAATCAAAAAACCAAG+TGG - chr1_3:29974109-29974128 Msa0113870:CDS 25.0%
! ATGAAAATGGATGTTTGAAA+TGG + chr1_3:29974291-29974310 None:intergenic 25.0%
!!! GAAATTTGTTTTCTGCATTT+GGG + chr1_3:29974352-29974371 None:intergenic 25.0%
! AAACAAATTTCCTTCTCATA+TGG - chr1_3:29974361-29974380 Msa0113870:CDS 25.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_3:29974442-29974461 Msa0113870:CDS 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_3:29974561-29974580 Msa0113870:CDS 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_3:29974562-29974581 Msa0113870:CDS 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_3:29974619-29974638 Msa0113870:CDS 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_3:29974693-29974712 Msa0113870:CDS 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_3:29974972-29974991 Msa0113870:CDS 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_3:29974973-29974992 Msa0113870:CDS 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_3:29975020-29975039 Msa0113870:CDS 25.0%
! ATAACACAAGTGTTAAAGAT+TGG - chr1_3:29975259-29975278 Msa0113870:CDS 25.0%
! ATATTGAGAATGTTGTTAGA+AGG - chr1_3:29975332-29975351 Msa0113870:CDS 25.0%
!!! TTTTGATTTGTTTTGGCCAT+TGG + chr1_3:29974102-29974121 None:intergenic 30.0%
! AGTGTAGAAGTTGATTCAAA+TGG + chr1_3:29974166-29974185 None:intergenic 30.0%
!! GAACTTTGAAGTGATGAAAA+TGG + chr1_3:29974304-29974323 None:intergenic 30.0%
!! GGAAATTTGTTTTCTGCATT+TGG + chr1_3:29974353-29974372 None:intergenic 30.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_3:29974441-29974460 Msa0113870:CDS 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_3:29974469-29974488 Msa0113870:CDS 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_3:29974605-29974624 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_3:29974692-29974711 Msa0113870:CDS 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_3:29974825-29974844 None:intergenic 30.0%
TGAGAAGAAGAAAGATTCAA+AGG - chr1_3:29974826-29974845 Msa0113870:CDS 30.0%
GAGAAGAAGAAAGATTCAAA+GGG - chr1_3:29974827-29974846 Msa0113870:CDS 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_3:29974930-29974949 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_3:29974942-29974961 Msa0113870:CDS 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_3:29975010-29975029 Msa0113870:CDS 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_3:29975019-29975038 Msa0113870:CDS 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_3:29975180-29975199 Msa0113870:CDS 30.0%
!! ACTTTAGAGAGCATTTCAAT+GGG - chr1_3:29975181-29975200 Msa0113870:CDS 30.0%
GTTATGAAAACACAGTTTCT+TGG + chr1_3:29975244-29975263 None:intergenic 30.0%
! ACAAGTGTTAAAGATTGGTT+TGG - chr1_3:29975264-29975283 Msa0113870:CDS 30.0%
AAATGCTATTGCTATGTCTA+TGG - chr1_3:29975408-29975427 Msa0113870:CDS 30.0%
!!! TTTTGATTTGTTTTGGCCAT+TGG + chr1_3:29974102-29974121 None:intergenic 30.0%
! AGTGTAGAAGTTGATTCAAA+TGG + chr1_3:29974166-29974185 None:intergenic 30.0%
!! GAACTTTGAAGTGATGAAAA+TGG + chr1_3:29974304-29974323 None:intergenic 30.0%
!! GGAAATTTGTTTTCTGCATT+TGG + chr1_3:29974353-29974372 None:intergenic 30.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_3:29974441-29974460 Msa0113870:CDS 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_3:29974469-29974488 Msa0113870:CDS 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_3:29974605-29974624 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_3:29974692-29974711 Msa0113870:CDS 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_3:29974825-29974844 None:intergenic 30.0%
TGAGAAGAAGAAAGATTCAA+AGG - chr1_3:29974826-29974845 Msa0113870:CDS 30.0%
GAGAAGAAGAAAGATTCAAA+GGG - chr1_3:29974827-29974846 Msa0113870:CDS 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_3:29974930-29974949 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_3:29974942-29974961 Msa0113870:CDS 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_3:29975010-29975029 Msa0113870:CDS 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_3:29975019-29975038 Msa0113870:CDS 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_3:29975180-29975199 Msa0113870:CDS 30.0%
!! ACTTTAGAGAGCATTTCAAT+GGG - chr1_3:29975181-29975200 Msa0113870:CDS 30.0%
GTTATGAAAACACAGTTTCT+TGG + chr1_3:29975244-29975263 None:intergenic 30.0%
! ACAAGTGTTAAAGATTGGTT+TGG - chr1_3:29975264-29975283 Msa0113870:CDS 30.0%
AAATGCTATTGCTATGTCTA+TGG - chr1_3:29975408-29975427 Msa0113870:CDS 30.0%
CAAATCAAAAAACCAAGTGG+TGG - chr1_3:29974112-29974131 Msa0113870:CDS 35.0%
AACATACCTGTTCACTATGT+TGG - chr1_3:29974209-29974228 Msa0113870:CDS 35.0%
! TGGATGTTTGAAATGGAGTT+TGG + chr1_3:29974284-29974303 None:intergenic 35.0%
!! TTGTTTTCTGCATTTGGGTT+AGG + chr1_3:29974347-29974366 None:intergenic 35.0%
AAAGAAGGAACCATATGAGA+AGG + chr1_3:29974374-29974393 None:intergenic 35.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_3:29974622-29974641 Msa0113870:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_3:29974736-29974755 Msa0113870:CDS 35.0%
TTCTCTATCAACTCCAAGTA+AGG + chr1_3:29974752-29974771 None:intergenic 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_3:29974817-29974836 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_3:29974818-29974837 None:intergenic 35.0%
AGAAGAAAGATTCAAAGGGT+AGG - chr1_3:29974831-29974850 Msa0113870:CDS 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_3:29974941-29974960 Msa0113870:CDS 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_3:29975043-29975062 Msa0113870:CDS 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_3:29975044-29975063 Msa0113870:CDS 35.0%
!! CTTTAGAGAGCATTTCAATG+GGG - chr1_3:29975182-29975201 Msa0113870:CDS 35.0%
!! TTTAGAGAGCATTTCAATGG+GGG - chr1_3:29975183-29975202 Msa0113870:CDS 35.0%
!! AAAGATTGGTTTGGTTGTGA+TGG - chr1_3:29975273-29975292 Msa0113870:CDS 35.0%
GAATGTTGTTAGAAGGTTGA+TGG - chr1_3:29975339-29975358 Msa0113870:CDS 35.0%
!! TAGAAGGTTGATGGATACAA+AGG - chr1_3:29975348-29975367 Msa0113870:CDS 35.0%
ATTGCTATGTCTATGGATGA+AGG - chr1_3:29975415-29975434 Msa0113870:CDS 35.0%
CAAATCAAAAAACCAAGTGG+TGG - chr1_3:29974112-29974131 Msa0113870:CDS 35.0%
AACATACCTGTTCACTATGT+TGG - chr1_3:29974209-29974228 Msa0113870:CDS 35.0%
! TGGATGTTTGAAATGGAGTT+TGG + chr1_3:29974284-29974303 None:intergenic 35.0%
!! TTGTTTTCTGCATTTGGGTT+AGG + chr1_3:29974347-29974366 None:intergenic 35.0%
AAAGAAGGAACCATATGAGA+AGG + chr1_3:29974374-29974393 None:intergenic 35.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_3:29974622-29974641 Msa0113870:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_3:29974736-29974755 Msa0113870:CDS 35.0%
TTCTCTATCAACTCCAAGTA+AGG + chr1_3:29974752-29974771 None:intergenic 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_3:29974817-29974836 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_3:29974818-29974837 None:intergenic 35.0%
AGAAGAAAGATTCAAAGGGT+AGG - chr1_3:29974831-29974850 Msa0113870:CDS 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_3:29974941-29974960 Msa0113870:CDS 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_3:29975043-29975062 Msa0113870:CDS 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_3:29975044-29975063 Msa0113870:CDS 35.0%
!! CTTTAGAGAGCATTTCAATG+GGG - chr1_3:29975182-29975201 Msa0113870:CDS 35.0%
!! TTTAGAGAGCATTTCAATGG+GGG - chr1_3:29975183-29975202 Msa0113870:CDS 35.0%
!! AAAGATTGGTTTGGTTGTGA+TGG - chr1_3:29975273-29975292 Msa0113870:CDS 35.0%
GAATGTTGTTAGAAGGTTGA+TGG - chr1_3:29975339-29975358 Msa0113870:CDS 35.0%
!! TAGAAGGTTGATGGATACAA+AGG - chr1_3:29975348-29975367 Msa0113870:CDS 35.0%
ATTGCTATGTCTATGGATGA+AGG - chr1_3:29975415-29975434 Msa0113870:CDS 35.0%
AAACCAAGTGGTGGTTATTG+TGG - chr1_3:29974121-29974140 Msa0113870:CDS 40.0%
TTAGGAGGAGGTGAAACAAA+GGG + chr1_3:29974329-29974348 None:intergenic 40.0%
!! TTTTCTGCATTTGGGTTAGG+AGG + chr1_3:29974344-29974363 None:intergenic 40.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_3:29974389-29974408 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_3:29974478-29974497 Msa0113870:CDS 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_3:29974572-29974591 Msa0113870:CDS 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_3:29974579-29974598 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_3:29974774-29974793 Msa0113870:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_3:29974775-29974794 Msa0113870:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_3:29974809-29974828 None:intergenic 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_3:29974995-29975014 Msa0113870:CDS 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_3:29975028-29975047 Msa0113870:CDS 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_3:29975118-29975137 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_3:29975119-29975138 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_3:29975141-29975160 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_3:29975152-29975171 Msa0113870:CDS 40.0%
TGAAAACACAGTTTCTTGGC+TGG + chr1_3:29975240-29975259 None:intergenic 40.0%
!! TTGGTTTGGTTGTGATGGAT+TGG - chr1_3:29975278-29975297 Msa0113870:CDS 40.0%
!! TGGTTTGGTTGTGATGGATT+GGG - chr1_3:29975279-29975298 Msa0113870:CDS 40.0%
TTGGGCTAAAAGACATGAGT+TGG - chr1_3:29975297-29975316 Msa0113870:CDS 40.0%
!! AGGTTGATGGATACAAAGGA+AGG - chr1_3:29975352-29975371 Msa0113870:CDS 40.0%
AAACCAAGTGGTGGTTATTG+TGG - chr1_3:29974121-29974140 Msa0113870:CDS 40.0%
TTAGGAGGAGGTGAAACAAA+GGG + chr1_3:29974329-29974348 None:intergenic 40.0%
!! TTTTCTGCATTTGGGTTAGG+AGG + chr1_3:29974344-29974363 None:intergenic 40.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_3:29974389-29974408 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_3:29974478-29974497 Msa0113870:CDS 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_3:29974572-29974591 Msa0113870:CDS 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_3:29974579-29974598 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_3:29974774-29974793 Msa0113870:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_3:29974775-29974794 Msa0113870:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_3:29974809-29974828 None:intergenic 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_3:29974995-29975014 Msa0113870:CDS 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_3:29975028-29975047 Msa0113870:CDS 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_3:29975118-29975137 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_3:29975119-29975138 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_3:29975141-29975160 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_3:29975152-29975171 Msa0113870:CDS 40.0%
TGAAAACACAGTTTCTTGGC+TGG + chr1_3:29975240-29975259 None:intergenic 40.0%
!! TTGGTTTGGTTGTGATGGAT+TGG - chr1_3:29975278-29975297 Msa0113870:CDS 40.0%
!! TGGTTTGGTTGTGATGGATT+GGG - chr1_3:29975279-29975298 Msa0113870:CDS 40.0%
TTGGGCTAAAAGACATGAGT+TGG - chr1_3:29975297-29975316 Msa0113870:CDS 40.0%
!! AGGTTGATGGATACAAAGGA+AGG - chr1_3:29975352-29975371 Msa0113870:CDS 40.0%
GTACCACAATAACCACCACT+TGG + chr1_3:29974127-29974146 None:intergenic 45.0%
!! GATTCAAATGGCCTTGTGCT+GGG + chr1_3:29974154-29974173 None:intergenic 45.0%
!! TGATTCAAATGGCCTTGTGC+TGG + chr1_3:29974155-29974174 None:intergenic 45.0%
! GAAGTGCCAACATAGTGAAC+AGG + chr1_3:29974218-29974237 None:intergenic 45.0%
CACAAATCGTGTCCAAGGTT+GGG - chr1_3:29974256-29974275 Msa0113870:CDS 45.0%
GTTAGGAGGAGGTGAAACAA+AGG + chr1_3:29974330-29974349 None:intergenic 45.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_3:29974422-29974441 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_3:29974571-29974590 Msa0113870:CDS 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_3:29974602-29974621 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_3:29974626-29974645 Msa0113870:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_3:29974635-29974654 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_3:29974782-29974801 Msa0113870:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_3:29974810-29974829 None:intergenic 45.0%
AAAGGGTAGGCATTCATGCA+TGG - chr1_3:29974844-29974863 Msa0113870:CDS 45.0%
GTAGGCATTCATGCATGGAA+TGG - chr1_3:29974849-29974868 Msa0113870:CDS 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_3:29974946-29974965 Msa0113870:CDS 45.0%
TGAAGAGAGAGTCGAAGGAA+TGG - chr1_3:29975069-29975088 Msa0113870:CDS 45.0%
GAAGAGAGAGTCGAAGGAAT+GGG - chr1_3:29975070-29975089 Msa0113870:CDS 45.0%
AAGAGAGAGTCGAAGGAATG+GGG - chr1_3:29975071-29975090 Msa0113870:CDS 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_3:29975089-29975108 Msa0113870:CDS 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_3:29975090-29975109 Msa0113870:CDS 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_3:29975120-29975139 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_3:29975127-29975146 Msa0113870:CDS 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_3:29975142-29975161 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_3:29975148-29975167 Msa0113870:CDS 45.0%
GCTATGTCTATGGATGAAGG+CGG - chr1_3:29975418-29975437 Msa0113870:CDS 45.0%
CGGAGTTTCTCGTATGGAAA+TGG - chr1_3:29975438-29975457 Msa0113870:CDS 45.0%
GTACCACAATAACCACCACT+TGG + chr1_3:29974127-29974146 None:intergenic 45.0%
!! GATTCAAATGGCCTTGTGCT+GGG + chr1_3:29974154-29974173 None:intergenic 45.0%
!! TGATTCAAATGGCCTTGTGC+TGG + chr1_3:29974155-29974174 None:intergenic 45.0%
! GAAGTGCCAACATAGTGAAC+AGG + chr1_3:29974218-29974237 None:intergenic 45.0%
CACAAATCGTGTCCAAGGTT+GGG - chr1_3:29974256-29974275 Msa0113870:CDS 45.0%
GTTAGGAGGAGGTGAAACAA+AGG + chr1_3:29974330-29974349 None:intergenic 45.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_3:29974422-29974441 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_3:29974571-29974590 Msa0113870:CDS 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_3:29974602-29974621 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_3:29974626-29974645 Msa0113870:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_3:29974635-29974654 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_3:29974782-29974801 Msa0113870:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_3:29974810-29974829 None:intergenic 45.0%
AAAGGGTAGGCATTCATGCA+TGG - chr1_3:29974844-29974863 Msa0113870:CDS 45.0%
GTAGGCATTCATGCATGGAA+TGG - chr1_3:29974849-29974868 Msa0113870:CDS 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_3:29974946-29974965 Msa0113870:CDS 45.0%
TGAAGAGAGAGTCGAAGGAA+TGG - chr1_3:29975069-29975088 Msa0113870:CDS 45.0%
GAAGAGAGAGTCGAAGGAAT+GGG - chr1_3:29975070-29975089 Msa0113870:CDS 45.0%
AAGAGAGAGTCGAAGGAATG+GGG - chr1_3:29975071-29975090 Msa0113870:CDS 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_3:29975089-29975108 Msa0113870:CDS 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_3:29975090-29975109 Msa0113870:CDS 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_3:29975120-29975139 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_3:29975127-29975146 Msa0113870:CDS 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_3:29975142-29975161 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_3:29975148-29975167 Msa0113870:CDS 45.0%
GCTATGTCTATGGATGAAGG+CGG - chr1_3:29975418-29975437 Msa0113870:CDS 45.0%
CGGAGTTTCTCGTATGGAAA+TGG - chr1_3:29975438-29975457 Msa0113870:CDS 45.0%
!! AAATGGCCTTGTGCTGGGAA+AGG + chr1_3:29974149-29974168 None:intergenic 50.0%
TGTGGCTTGACGGTTGTGTA+TGG + chr1_3:29974240-29974259 None:intergenic 50.0%
GGACACGATTTGTGGCTTGA+CGG + chr1_3:29974250-29974269 None:intergenic 50.0%
CAAGCCACAAATCGTGTCCA+AGG - chr1_3:29974251-29974270 Msa0113870:CDS 50.0%
CCAACCTTGGACACGATTTG+TGG + chr1_3:29974258-29974277 None:intergenic 50.0%
CCACAAATCGTGTCCAAGGT+TGG - chr1_3:29974255-29974274 Msa0113870:CDS 50.0%
TGGAGTTTGGATCCCAACCT+TGG + chr1_3:29974271-29974290 None:intergenic 50.0%
! TCTGCATTTGGGTTAGGAGG+AGG + chr1_3:29974341-29974360 None:intergenic 50.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_3:29974402-29974421 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_3:29974403-29974422 Msa0113870:CDS 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_3:29974781-29974800 Msa0113870:CDS 50.0%
GGGTTTGAAGAGAGAGTCGA+AGG - chr1_3:29975064-29975083 Msa0113870:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_3:29975131-29975150 Msa0113870:CDS 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_3:29975138-29975157 None:intergenic 50.0%
TGCATAGGCCATGCTGCTAT+TGG + chr1_3:29975211-29975230 None:intergenic 50.0%
! CTTGGCTGGTCAGAATGCAT+AGG + chr1_3:29975226-29975245 None:intergenic 50.0%
TGAAGGCGGAGTTTCTCGTA+TGG - chr1_3:29975432-29975451 Msa0113870:CDS 50.0%
!! AAATGGCCTTGTGCTGGGAA+AGG + chr1_3:29974149-29974168 None:intergenic 50.0%
TGTGGCTTGACGGTTGTGTA+TGG + chr1_3:29974240-29974259 None:intergenic 50.0%
GGACACGATTTGTGGCTTGA+CGG + chr1_3:29974250-29974269 None:intergenic 50.0%
CAAGCCACAAATCGTGTCCA+AGG - chr1_3:29974251-29974270 Msa0113870:CDS 50.0%
CCAACCTTGGACACGATTTG+TGG + chr1_3:29974258-29974277 None:intergenic 50.0%
CCACAAATCGTGTCCAAGGT+TGG - chr1_3:29974255-29974274 Msa0113870:CDS 50.0%
TGGAGTTTGGATCCCAACCT+TGG + chr1_3:29974271-29974290 None:intergenic 50.0%
! TCTGCATTTGGGTTAGGAGG+AGG + chr1_3:29974341-29974360 None:intergenic 50.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_3:29974402-29974421 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_3:29974403-29974422 Msa0113870:CDS 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_3:29974781-29974800 Msa0113870:CDS 50.0%
GGGTTTGAAGAGAGAGTCGA+AGG - chr1_3:29975064-29975083 Msa0113870:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_3:29975131-29975150 Msa0113870:CDS 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_3:29975138-29975157 None:intergenic 50.0%
TGCATAGGCCATGCTGCTAT+TGG + chr1_3:29975211-29975230 None:intergenic 50.0%
! CTTGGCTGGTCAGAATGCAT+AGG + chr1_3:29975226-29975245 None:intergenic 50.0%
TGAAGGCGGAGTTTCTCGTA+TGG - chr1_3:29975432-29975451 Msa0113870:CDS 50.0%
GTGGTACCTTTCCCAGCACA+AGG - chr1_3:29974140-29974159 Msa0113870:CDS 55.0%
GGAGGAGGTGAAACAAAGGG+AGG + chr1_3:29974326-29974345 None:intergenic 55.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_3:29975130-29975149 Msa0113870:CDS 55.0%
GTGGTACCTTTCCCAGCACA+AGG - chr1_3:29974140-29974159 Msa0113870:CDS 55.0%
GGAGGAGGTGAAACAAAGGG+AGG + chr1_3:29974326-29974345 None:intergenic 55.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_3:29975130-29975149 Msa0113870:CDS 55.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_3:29975102-29975121 Msa0113870:CDS 60.0%
!! TGGGGGTGCCAATAGCAGCA+TGG - chr1_3:29975200-29975219 Msa0113870:CDS 60.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_3:29975102-29975121 Msa0113870:CDS 60.0%
!! TGGGGGTGCCAATAGCAGCA+TGG - chr1_3:29975200-29975219 Msa0113870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 29974092 29975489 29974092 ID=Msa0113870;Name=Msa0113870
chr1_3 mRNA 29974092 29975489 29974092 ID=Msa0113870-mRNA-1;Parent=Msa0113870;Name=Msa0113870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|465
chr1_3 exon 29974092 29975489 29974092 ID=Msa0113870-mRNA-1:exon:9945;Parent=Msa0113870-mRNA-1
chr1_3 CDS 29974092 29975489 29974092 ID=Msa0113870-mRNA-1:cds;Parent=Msa0113870-mRNA-1
Gene Sequence

>Msa0113870

ATGGCTTCCAATGGCCAAAACAAATCAAAAAACCAAGTGGTGGTTATTGTGGTACCTTTCCCAGCACAAGGCCATTTGAATCAACTTCTACACTTCTCACGCTTAATCTTATCACACAACATACCTGTTCACTATGTTGGCACTTCCATACACAACCGTCAAGCCACAAATCGTGTCCAAGGTTGGGATCCAAACTCCATTTCAAACATCCATTTTCATCACTTCAAAGTTCCTCCCTTTGTTTCACCTCCTCCTAACCCAAATGCAGAAAACAAATTTCCTTCTCATATGGTTCCTTCTTTTCTAGCCTCTTCACATCTTCGTGAGCCAGTGGTAGAACTCATGCAATCACTTTCATCTGTTTTCAAAAGGGTTGTTGTGATTCATGATAGTCTAATGGCATCAGTGGTACAAGATGCTAAAAACATAGAAAATGTTGAGAATTACTCATTTCTCAGTACATGTGCTTTTACAATTTTCACTTCCATTTGGGAGAAAGTGGGAAAACCTCCGATTGAAAGCTCGCATATTATTGATGTTCCTTCTATGGAGGATGGATGCTTCACAGCTGAAATCAGTGACTTCTTTAATGCACAAAAAGAATTCTATGCATTAAGTGATGGGAGCATCTACAATACAAGCAGAGTCATTGAAAGTCCTTACTTGGAGTTGATAGAGAAAATCACTTGCAGTAAGAAGCATTGGGCAGTGGGACCCTTCAACCCTCTTACCATTGAGAAGAAGAAAGATTCAAAGGGTAGGCATTCATGCATGGAATGGCTTGATAAACAAGAACCAAATTCAGTTATATATGTATCTTTTGGAACAACAACAACCTTGACAGATGAAGAAATTGAACAGATTGCAACTGGGTTGGAACAAAGCAAGATAAAGTTCATTTGGGTGTTGAGAGATGCTGATAAAGGAGACATATTTGATGGAAATGAAGGGAAAAGAGGTGAACTTGCAAAAGGGTTTGAAGAGAGAGTCGAAGGAATGGGGTTTGTTGTGAGAGATTGGGCACCCCAGTTGGAAATTCTAAGCCACCCTTCAACAGGAGGGTTTATGAGTCATTGTGGATGGAACTCTACTTTAGAGAGCATTTCAATGGGGGTGCCAATAGCAGCATGGCCTATGCATTCTGACCAGCCAAGAAACTGTGTTTTCATAACACAAGTGTTAAAGATTGGTTTGGTTGTGATGGATTGGGCTAAAAGACATGAGTTGGTTACTGCTTCAGATATTGAGAATGTTGTTAGAAGGTTGATGGATACAAAGGAAGGTGATGAGATGCGCGAGAGAGCAATGAAACTTAAAAATGCTATTGCTATGTCTATGGATGAAGGCGGAGTTTCTCGTATGGAAATGGATTCTTTCATCGCTCATGTCACTCGATAA
Protein sequence

>Msa0113870

MASNGQNKSKNQVVVIVVPFPAQGHLNQLLHFSRLILSHNIPVHYVGTSIHNRQATNRVQGWDPNSISNIHFHHFKVPPFVSPPPNPNAENKFPSHMVPSFLASSHLREPVVELMQSLSSVFKRVVVIHDSLMASVVQDAKNIENVENYSFLSTCAFTIFTSIWEKVGKPPIESSHIIDVPSMEDGCFTAEISDFFNAQKEFYALSDGSIYNTSRVIESPYLELIEKITCSKKHWAVGPFNPLTIEKKKDSKGRHSCMEWLDKQEPNSVIYVSFGTTTTLTDEEIEQIATGLEQSKIKFIWVLRDADKGDIFDGNEGKRGELAKGFEERVEGMGFVVRDWAPQLEILSHPSTGGFMSHCGWNSTLESISMGVPIAAWPMHSDQPRNCVFITQVLKIGLVVMDWAKRHELVTASDIENVVRRLMDTKEGDEMRERAMKLKNAIAMSMDEGGVSRMEMDSFIAHVTR*