AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021130 MtrunA17_Chr1g0173121 94.194 465 26 1 1 465 1 464 0.0 889
Msa0021130 MtrunA17_Chr1g0159551 86.695 466 56 3 1 465 1 461 0.0 822
Msa0021130 MtrunA17_Chr8g0382021 67.965 462 141 5 10 465 30 490 0.0 635
Msa0021130 MtrunA17_Chr7g0232411 30.901 466 271 13 15 449 7 452 8.24e-57 195
Msa0021130 MtrunA17_Chr5g0440421 30.584 497 287 17 15 465 11 495 2.97e-56 194
Msa0021130 MtrunA17_Chr4g0044511 30.864 486 271 16 15 460 41 501 2.23e-54 189
Msa0021130 MtrunA17_Chr7g0232391 30.043 466 280 13 15 452 7 454 2.96e-54 188
Msa0021130 MtrunA17_Chr6g0464871 29.209 493 278 18 6 465 14 468 3.21e-54 188
Msa0021130 MtrunA17_Chr6g0449931 30.462 476 275 14 15 456 7 460 3.36e-54 188
Msa0021130 MtrunA17_Chr7g0275511 31.120 482 267 16 9 452 10 464 3.96e-54 188
Msa0021130 MtrunA17_Chr7g0243931 31.992 497 270 20 2 452 5 479 1.44e-53 187
Msa0021130 MtrunA17_Chr7g0232341 28.632 475 293 13 15 461 7 463 2.13e-53 186
Msa0021130 MtrunA17_Chr5g0426431 29.352 494 287 19 9 463 7 477 4.40e-53 185
Msa0021130 MtrunA17_Chr8g0347271 30.932 472 273 14 14 456 19 466 6.38e-53 185
Msa0021130 MtrunA17_Chr7g0243681 30.658 486 274 18 8 452 5 468 1.08e-52 184
Msa0021130 MtrunA17_Chr3g0078841 28.367 490 285 17 16 463 12 477 1.55e-52 184
Msa0021130 MtrunA17_Chr7g0243801 30.658 486 267 17 12 452 5 465 3.71e-52 183
Msa0021130 MtrunA17_Chr7g0232331 29.167 480 284 15 15 461 7 463 3.88e-52 182
Msa0021130 MtrunA17_Chr8g0334861 30.445 427 251 14 66 465 58 465 3.96e-52 182
Msa0021130 MtrunA17_Chr8g0347281 30.444 473 274 14 14 456 18 465 7.98e-52 182
Msa0021130 MtrunA17_Chr6g0486251 28.270 474 301 11 10 459 2 460 9.36e-52 181
Msa0021130 MtrunA17_Chr6g0486201 28.270 474 301 11 10 459 2 460 9.36e-52 181
Msa0021130 MtrunA17_Chr7g0243771 29.796 490 270 17 10 452 2 464 1.03e-51 182
Msa0021130 MtrunA17_Chr8g0366391 28.398 493 294 14 7 460 2 474 1.10e-51 182
Msa0021130 MtrunA17_Chr7g0265051 28.571 490 296 16 16 465 11 486 1.95e-51 181
Msa0021130 MtrunA17_Chr8g0373301 39.394 264 140 6 199 452 202 455 2.01e-51 181
Msa0021130 MtrunA17_Chr4g0066151 38.194 288 158 9 191 460 191 476 3.43e-51 180
Msa0021130 MtrunA17_Chr7g0243871 37.542 301 167 8 173 460 177 469 4.18e-51 180
Msa0021130 MtrunA17_Chr7g0232311 30.786 471 286 9 15 461 7 461 4.80e-51 179
Msa0021130 MtrunA17_Chr6g0459311 27.859 481 308 11 3 459 2 467 6.19e-51 179
Msa0021130 MtrunA17_Chr7g0243951 31.084 489 272 20 8 452 5 472 6.42e-51 180
Msa0021130 MtrunA17_Chr4g0060511 30.533 488 280 16 8 452 5 476 6.65e-51 180
Msa0021130 MtrunA17_Chr8g0336651 29.764 467 287 10 13 452 780 1232 6.89e-51 186
Msa0021130 MtrunA17_Chr8g0336651 32.249 369 228 8 96 450 91 451 1.14e-47 176
Msa0021130 MtrunA17_Chr8g0336651 35.200 250 132 4 204 452 543 763 4.72e-40 154
Msa0021130 MtrunA17_Chr6g0462551 28.747 487 290 16 14 464 4 469 7.18e-51 179
Msa0021130 MtrunA17_Chr6g0454401 28.831 496 280 17 15 463 11 480 9.96e-51 179
Msa0021130 MtrunA17_Chr7g0275681 29.752 484 287 15 16 463 14 480 2.89e-50 177
Msa0021130 MtrunA17_Chr4g0014061 29.980 497 266 19 15 463 10 472 4.31e-50 177
Msa0021130 MtrunA17_Chr7g0265141 29.899 495 284 18 11 460 6 482 6.76e-50 177
Msa0021130 MtrunA17_Chr4g0066281 29.072 485 275 17 18 465 16 468 8.75e-50 176
Msa0021130 MtrunA17_Chr4g0066131 36.177 293 167 9 191 465 186 476 1.03e-49 176
Msa0021130 MtrunA17_Chr8g0336691 31.330 466 275 15 15 452 920 1368 1.31e-49 182
Msa0021130 MtrunA17_Chr8g0336691 29.814 483 285 15 1 452 3 462 2.43e-49 181
Msa0021130 MtrunA17_Chr8g0336691 28.228 457 273 11 15 452 481 901 2.05e-42 161
Msa0021130 MtrunA17_Chr3g0118671 24.848 495 302 14 15 465 7 475 1.64e-49 176
Msa0021130 MtrunA17_Chr4g0044521 34.884 301 172 9 177 460 170 463 2.85e-49 175
Msa0021130 MtrunA17_Chr8g0339631 37.410 278 152 7 195 459 196 464 3.27e-49 175
Msa0021130 MtrunA17_Chr6g0464841 28.398 493 282 18 6 465 2 456 4.54e-49 174
Msa0021130 MtrunA17_Chr8g0361371 27.066 484 301 14 10 460 3 467 4.63e-49 174
Msa0021130 MtrunA17_Chr7g0265101 27.419 496 304 15 12 465 7 488 6.63e-49 174
Msa0021130 MtrunA17_Chr4g0066221 30.453 486 272 19 18 460 15 477 7.75e-49 174
Msa0021130 MtrunA17_Chr8g0336741 30.490 469 284 15 11 453 10 462 7.78e-49 174
Msa0021130 MtrunA17_Chr8g0339451 40.083 242 134 3 231 464 226 464 1.09e-48 173
Msa0021130 MtrunA17_Chr8g0336331 27.459 488 291 16 16 463 12 476 1.12e-48 173
Msa0021130 MtrunA17_Chr8g0339441 42.180 211 112 2 257 459 217 425 1.37e-48 172
Msa0021130 MtrunA17_Chr6g0464861 27.917 480 279 16 16 465 13 455 1.58e-48 172
Msa0021130 MtrunA17_Chr7g0265041 34.589 292 169 7 191 465 204 490 1.66e-48 173
Msa0021130 MtrunA17_Chr7g0243861 29.541 501 279 17 1 452 1 476 1.68e-48 173
Msa0021130 MtrunA17_Chr2g0278711 27.664 488 289 18 16 463 13 476 2.18e-48 172
Msa0021130 MtrunA17_Chr1g0153451 29.654 462 287 11 15 453 7 453 3.37e-48 172
Msa0021130 MtrunA17_Chr6g0464881 29.387 473 285 16 10 460 6 451 4.02e-48 171
Msa0021130 MtrunA17_Chr4g0044501 33.101 287 172 7 184 460 196 472 4.15e-48 172
Msa0021130 MtrunA17_Chr7g0243781 29.583 480 277 16 12 452 7 464 7.22e-48 171
Msa0021130 MtrunA17_Chr6g0463861 31.139 395 230 15 101 465 93 475 8.21e-48 171
Msa0021130 MtrunA17_Chr3g0112761 28.211 475 281 13 15 463 9 449 8.26e-48 171
Msa0021130 MtrunA17_Chr6g0454331 26.884 491 297 15 15 463 8 478 8.45e-48 171
Msa0021130 MtrunA17_Chr7g0265151 33.904 292 167 7 194 465 200 485 1.09e-47 171
Msa0021130 MtrunA17_Chr6g0453961 26.190 504 299 14 7 463 12 489 1.14e-47 171
Msa0021130 MtrunA17_Chr8g0339461 39.662 237 132 3 231 459 234 467 1.31e-47 170
Msa0021130 MtrunA17_Chr5g0423981 27.601 471 280 15 16 463 12 444 1.77e-47 169
Msa0021130 MtrunA17_Chr7g0232401 35.016 317 182 8 154 459 160 463 1.84e-47 170
Msa0021130 MtrunA17_Chr6g0453951 26.707 498 285 16 16 463 59 526 2.04e-47 171
Msa0021130 MtrunA17_Chr3g0092641 28.144 501 284 20 9 463 7 477 2.07e-47 170
Msa0021130 MtrunA17_Chr4g0066261 36.082 291 163 10 194 465 197 483 2.35e-47 170
Msa0021130 MtrunA17_Chr7g0235051 29.684 475 267 18 8 452 5 442 2.41e-47 169
Msa0021130 MtrunA17_Chr7g0243631 29.243 489 276 19 11 452 10 475 2.44e-47 170
Msa0021130 MtrunA17_Chr3g0118771 25.667 487 304 15 15 463 22 488 2.89e-47 170
Msa0021130 MtrunA17_Chr7g0243851 30.444 473 255 19 8 452 5 431 3.06e-47 169
Msa0021130 MtrunA17_Chr5g0412111 29.132 484 280 14 15 463 6 461 3.09e-47 169
Msa0021130 MtrunA17_Chr6g0454341 26.380 489 298 16 15 463 11 477 3.19e-47 169
Msa0021130 MtrunA17_Chr8g0339601 37.778 270 147 5 195 450 55 317 3.77e-47 166
Msa0021130 MtrunA17_Chr6g0462531 26.834 477 296 15 15 459 5 460 4.28e-47 169
Msa0021130 MtrunA17_Chr3g0118711 25.558 493 297 15 15 463 14 480 6.21e-47 169
Msa0021130 MtrunA17_Chr6g0463851 34.982 283 155 9 209 465 205 484 6.76e-47 169
Msa0021130 MtrunA17_Chr6g0454361 26.721 494 292 16 15 463 12 480 7.41e-47 169
Msa0021130 MtrunA17_Chr8g0334851 30.688 378 225 11 111 461 99 466 7.92e-47 168
Msa0021130 MtrunA17_Chr6g0462571 27.364 497 281 17 14 464 4 466 1.39e-46 167
Msa0021130 MtrunA17_Chr2g0294941 37.805 246 136 7 229 458 130 374 1.49e-46 165
Msa0021130 MtrunA17_Chr8g0336731 30.563 373 236 9 96 453 117 481 1.86e-46 168
Msa0021130 MtrunA17_Chr5g0401721 27.475 495 292 17 9 463 3 470 1.90e-46 167
Msa0021130 MtrunA17_Chr6g0454131 27.613 507 286 17 7 463 3 478 1.92e-46 167
Msa0021130 MtrunA17_Chr3g0118691 27.254 488 295 18 15 463 16 482 2.53e-46 167
Msa0021130 MtrunA17_Chr8g0335141 34.628 309 189 8 162 463 166 468 2.66e-46 167
Msa0021130 MtrunA17_Chr8g0369341 28.571 497 277 19 9 460 2 465 3.32e-46 167
Msa0021130 MtrunA17_Chr8g0374941 28.157 483 298 15 17 465 952 1419 3.50e-46 172
Msa0021130 MtrunA17_Chr8g0374941 28.632 468 283 14 17 449 14 465 2.59e-42 160
Msa0021130 MtrunA17_Chr8g0374941 30.323 465 271 18 17 445 479 926 1.91e-38 149
Msa0021130 MtrunA17_Chr7g0218311 36.458 288 158 9 201 465 200 485 4.16e-46 167
Msa0021130 MtrunA17_Chr3g0118701 25.410 488 304 15 15 463 16 482 4.96e-46 166
Msa0021130 MtrunA17_Chr5g0419761 28.481 474 287 16 16 449 11 472 5.29e-46 166
Msa0021130 MtrunA17_Chr6g0454291 26.639 488 298 14 16 463 9 476 5.63e-46 166
Msa0021130 MtrunA17_Chr4g0066201 29.310 464 293 13 18 460 22 471 6.44e-46 166
Msa0021130 MtrunA17_Chr3g0079731 33.577 274 167 5 201 460 205 477 1.02e-45 166
Msa0021130 MtrunA17_Chr6g0454181 25.755 497 309 13 7 463 3 479 1.26e-45 165
Msa0021130 MtrunA17_Chr6g0454261 25.714 490 302 13 15 463 11 479 1.46e-45 165
Msa0021130 MtrunA17_Chr4g0011051 26.220 492 308 14 16 465 11 489 1.62e-45 165
Msa0021130 MtrunA17_Chr8g0335161 35.249 261 159 4 204 459 207 462 1.83e-45 164
Msa0021130 MtrunA17_Chr8g0374901 29.106 481 294 16 17 465 15 480 1.97e-45 165
Msa0021130 MtrunA17_Chr5g0426401 37.121 264 141 7 210 463 62 310 2.52e-45 160
Msa0021130 MtrunA17_Chr8g0334831 26.559 497 296 17 10 460 2 475 4.95e-45 164
Msa0021130 MtrunA17_Chr8g0374931 37.549 253 141 7 229 465 232 483 5.18e-45 164
Msa0021130 MtrunA17_Chr3g0118661 27.673 477 284 14 15 452 14 468 5.27e-45 164
Msa0021130 MtrunA17_Chr6g0462521 27.097 465 296 14 15 459 5 446 5.44e-45 163
Msa0021130 MtrunA17_Chr6g0454151 26.892 502 279 16 15 463 11 477 7.68e-45 163
Msa0021130 MtrunA17_Chr6g0454191 25.956 497 309 13 7 463 3 480 9.42e-45 163
Msa0021130 MtrunA17_Chr2g0294921 35.517 290 159 10 201 465 346 632 1.26e-44 165
Msa0021130 MtrunA17_Chr7g0217881 27.406 478 289 15 16 463 12 461 1.40e-44 162
Msa0021130 MtrunA17_Chr6g0454211 26.380 489 300 13 15 463 298 766 1.43e-44 166
Msa0021130 MtrunA17_Chr6g0454211 29.302 215 101 6 170 374 62 235 1.18e-16 82.8
Msa0021130 MtrunA17_Chr2g0302991 28.306 431 257 15 64 465 57 464 1.91e-44 162
Msa0021130 MtrunA17_Chr5g0419771 28.367 490 296 18 15 463 37 512 1.97e-44 162
Msa0021130 MtrunA17_Chr1g0153461 39.810 211 119 4 257 462 3 210 2.52e-44 154
Msa0021130 MtrunA17_Chr4g0050341 27.033 492 295 17 15 463 20 490 3.13e-44 162
Msa0021130 MtrunA17_Chr6g0454221 37.559 213 115 4 248 460 33 227 4.11e-44 157
Msa0021130 MtrunA17_Chr2g0302961 27.311 476 307 14 15 465 6 467 5.48e-44 160
Msa0021130 MtrunA17_Chr6g0462541 27.349 479 286 18 14 456 4 456 6.39e-44 160
Msa0021130 MtrunA17_Chr6g0454121 27.613 507 286 18 7 463 3 478 6.61e-44 160
Msa0021130 MtrunA17_Chr6g0454321 26.403 481 284 15 16 452 12 466 7.63e-44 163
Msa0021130 MtrunA17_Chr6g0454301 26.380 489 296 16 16 463 265 730 7.67e-44 164
Msa0021130 MtrunA17_Chr6g0454301 35.065 231 118 5 248 464 32 244 2.99e-36 142
Msa0021130 MtrunA17_Chr7g0241781 27.051 451 292 13 15 463 10 425 1.03e-43 159
Msa0021130 MtrunA17_Chr6g0464921 26.915 483 301 16 6 464 2 456 2.26e-43 159
Msa0021130 MtrunA17_Chr5g0428081 36.759 253 143 7 229 465 230 481 2.47e-43 159
Msa0021130 MtrunA17_Chr5g0442541 28.067 481 293 17 15 463 6 465 3.33e-43 158
Msa0021130 MtrunA17_Chr6g0454271 36.574 216 119 4 248 463 89 286 3.34e-43 154
Msa0021130 MtrunA17_Chr3g0112771 28.750 480 270 16 15 463 13 451 3.88e-43 158
Msa0021130 MtrunA17_Chr4g0044481 38.426 216 117 5 192 400 193 399 6.30e-43 157
Msa0021130 MtrunA17_Chr8g0359821 26.844 488 295 17 16 463 12 477 7.14e-43 157
Msa0021130 MtrunA17_Chr1g0179901 26.465 495 300 17 15 463 17 493 9.72e-43 157
Msa0021130 MtrunA17_Chr5g0420801 27.673 477 297 17 9 460 2 455 1.08e-42 157
Msa0021130 MtrunA17_Chr4g0032331 28.256 453 277 15 15 446 9 434 1.11e-42 157
Msa0021130 MtrunA17_Chr2g0294931 36.765 272 154 8 210 465 214 483 1.11e-42 157
Msa0021130 MtrunA17_Chr5g0410941 35.294 289 161 9 201 465 205 491 1.36e-42 157
Msa0021130 MtrunA17_Chr5g0414331 25.918 490 282 17 11 464 10 454 2.03e-42 156
Msa0021130 MtrunA17_Chr4g0053501 25.934 482 305 14 10 463 7 464 2.48e-42 156
Msa0021130 MtrunA17_Chr8g0374971 34.646 254 148 7 229 465 230 482 3.14e-42 156
Msa0021130 MtrunA17_Chr8g0350881 28.831 496 282 17 15 465 13 482 3.62e-42 156
Msa0021130 MtrunA17_Chr4g0066171 35.628 247 141 6 229 460 230 473 6.68e-42 155
Msa0021130 MtrunA17_Chr5g0414321 25.101 494 289 17 6 463 3 451 7.32e-42 154
Msa0021130 MtrunA17_Chr5g0442561 27.711 498 280 20 15 463 6 472 1.15e-41 154
Msa0021130 MtrunA17_Chr4g0053321 32.374 278 167 7 200 463 209 479 1.54e-41 154
Msa0021130 MtrunA17_Chr5g0442601 26.804 485 305 15 15 463 405 875 2.36e-41 157
Msa0021130 MtrunA17_Chr5g0442601 36.898 187 111 4 235 415 165 350 2.30e-29 122
Msa0021130 MtrunA17_Chr2g0307961 26.860 484 290 15 15 463 14 468 3.84e-41 152
Msa0021130 MtrunA17_Chr5g0403641 38.498 213 121 3 237 439 266 478 5.33e-41 153
Msa0021130 MtrunA17_Chr7g0241801 27.523 436 263 14 15 438 10 404 7.09e-41 151
Msa0021130 MtrunA17_Chr7g0243611 36.475 244 130 7 189 421 63 292 1.07e-40 147
Msa0021130 MtrunA17_Chr6g0454201 32.700 263 152 5 210 463 234 480 1.96e-40 151
Msa0021130 MtrunA17_Chr6g0452771 33.460 263 150 5 210 463 233 479 2.18e-40 151
Msa0021130 MtrunA17_Chr5g0431441 27.651 481 282 18 15 463 19 465 3.28e-40 150
Msa0021130 MtrunA17_Chr6g0454141 36.111 216 120 4 248 463 282 479 3.60e-40 150
Msa0021130 MtrunA17_Chr5g0412101 27.823 496 291 17 6 463 4 470 5.17e-40 150
Msa0021130 MtrunA17_Chr8g0355221 33.942 274 160 7 206 463 218 486 5.31e-40 150
Msa0021130 MtrunA17_Chr7g0265111 28.571 504 299 15 4 463 29 515 8.55e-40 150
Msa0021130 MtrunA17_Chr7g0243811 37.885 227 127 5 176 396 155 373 1.21e-39 147
Msa0021130 MtrunA17_Chr4g0072761 38.158 228 122 6 237 464 245 453 1.25e-39 148
Msa0021130 MtrunA17_Chr3g0098111 25.150 501 294 14 9 463 4 469 1.59e-39 148
Msa0021130 MtrunA17_Chr5g0448521 34.568 243 140 8 235 463 230 467 1.65e-39 148
Msa0021130 MtrunA17_Chr1g0207971 25.000 488 300 14 9 465 3 455 2.13e-39 147
Msa0021130 MtrunA17_Chr3g0118721 34.783 207 122 4 257 463 96 289 2.41e-39 144
Msa0021130 MtrunA17_Chr7g0243761 28.364 483 280 16 8 460 5 451 3.25e-39 147
Msa0021130 MtrunA17_Chr5g0442521 26.423 492 297 18 15 463 6 475 3.67e-39 147
Msa0021130 MtrunA17_Chr1g0207981 31.064 235 144 5 237 463 248 472 5.37e-39 147
Msa0021130 MtrunA17_Chr5g0442491 32.013 303 187 9 175 463 177 474 7.07e-39 147
Msa0021130 MtrunA17_Chr7g0249981 25.615 488 285 16 11 463 22 466 8.06e-39 147
Msa0021130 MtrunA17_Chr7g0243711 36.735 245 125 7 237 460 78 313 8.79e-39 143
Msa0021130 MtrunA17_Chr5g0412131 27.530 494 294 15 6 463 4 469 1.15e-38 146
Msa0021130 MtrunA17_Chr2g0329111 28.571 490 296 19 15 465 7 481 1.29e-38 146
Msa0021130 MtrunA17_Chr7g0250001 35.885 209 119 4 252 460 251 444 1.75e-38 145
Msa0021130 MtrunA17_Chr7g0218791 26.797 459 281 16 16 450 7 434 2.68e-38 144
Msa0021130 MtrunA17_Chr8g0370941 33.471 242 132 6 235 452 241 477 2.75e-38 145
Msa0021130 MtrunA17_Chr6g0454351 25.703 498 301 16 1 463 1 464 5.36e-38 144
Msa0021130 MtrunA17_Chr4g0042891 34.749 259 155 6 208 460 212 462 7.05e-38 144
Msa0021130 MtrunA17_Chr5g0401851 25.301 498 316 18 6 463 2 483 8.23e-38 144
Msa0021130 MtrunA17_Chr8g0365811 26.694 487 306 14 9 463 490 957 1.22e-37 146
Msa0021130 MtrunA17_Chr8g0365811 25.208 480 326 12 9 463 4 475 8.86e-33 132
Msa0021130 MtrunA17_Chr5g0429711 26.869 495 273 23 15 464 12 462 1.50e-37 142
Msa0021130 MtrunA17_Chr1g0207951 33.810 210 125 2 256 465 915 1110 1.54e-37 146
Msa0021130 MtrunA17_Chr1g0207951 25.673 483 292 14 15 465 125 572 2.68e-36 142
Msa0021130 MtrunA17_Chr3g0118751 24.795 488 278 15 15 463 7 444 2.49e-37 142
Msa0021130 MtrunA17_Chr1g0207931 25.106 470 284 15 8 465 86 499 3.05e-37 142
Msa0021130 MtrunA17_Chr5g0442511 32.780 241 145 8 235 463 258 493 3.54e-37 142
Msa0021130 MtrunA17_Chr5g0442581 35.510 245 135 10 235 463 239 476 4.72e-37 142
Msa0021130 MtrunA17_Chr7g0249931 27.664 488 275 22 9 460 35 480 7.86e-37 141
Msa0021130 MtrunA17_Chr8g0380531 25.562 489 286 17 15 465 11 459 9.27e-37 140
Msa0021130 MtrunA17_Chr4g0042931 34.231 260 159 6 208 460 206 460 9.39e-37 140
Msa0021130 MtrunA17_Chr8g0361411 34.981 263 147 7 208 460 202 450 1.91e-36 139
Msa0021130 MtrunA17_Chr5g0431371 27.331 472 288 16 15 464 11 449 1.92e-36 139
Msa0021130 MtrunA17_Chr5g0431361 27.902 491 264 21 15 464 13 454 3.40e-36 139
Msa0021130 MtrunA17_Chr5g0432731 30.565 301 185 8 170 463 13 296 7.06e-36 134
Msa0021130 MtrunA17_Chr7g0243911 37.811 201 104 5 260 448 24 215 8.13e-36 132
Msa0021130 MtrunA17_Chr8g0377921 27.000 500 273 16 15 463 5 463 8.14e-36 138
Msa0021130 MtrunA17_Chr5g0409591 38.021 192 105 3 258 441 275 460 1.76e-35 137
Msa0021130 MtrunA17_Chr1g0207831 24.544 493 304 14 10 465 4 465 2.09e-35 137
Msa0021130 MtrunA17_Chr6g0454171 30.405 296 164 7 179 463 45 309 3.22e-35 133
Msa0021130 MtrunA17_Chr8g0355011 35.678 199 114 3 265 463 177 361 4.00e-35 134
Msa0021130 MtrunA17_Chr1g0165701 32.491 277 157 8 206 463 218 483 4.64e-35 136
Msa0021130 MtrunA17_Chr8g0377941 36.765 204 113 4 258 460 270 458 5.55e-35 135
Msa0021130 MtrunA17_Chr3g0122001 35.496 262 151 7 216 463 695 952 6.30e-35 138
Msa0021130 MtrunA17_Chr3g0122001 35.094 265 149 7 216 463 215 473 7.21e-34 135
Msa0021130 MtrunA17_Chr7g0249961 33.491 212 126 3 252 463 63 259 7.37e-35 131
Msa0021130 MtrunA17_Chr5g0431401 27.615 478 279 20 15 464 11 449 2.07e-34 134
Msa0021130 MtrunA17_Chr6g0454251 26.817 399 238 14 16 374 9 393 1.74e-33 130
Msa0021130 MtrunA17_Chr1g0207861 25.820 488 295 14 15 463 9 468 1.75e-33 132
Msa0021130 MtrunA17_Chr7g0232351 28.389 391 229 14 15 374 7 377 2.40e-33 129
Msa0021130 MtrunA17_Chr7g0218821 30.000 270 161 7 194 460 203 447 3.44e-33 130
Msa0021130 MtrunA17_Chr7g0218831 31.092 238 134 4 231 461 223 437 5.10e-33 130
Msa0021130 MtrunA17_Chr3g0121991 36.073 219 125 5 250 463 337 545 5.22e-33 131
Msa0021130 MtrunA17_Chr8g0357361 33.493 209 113 4 203 402 62 253 1.41e-32 124
Msa0021130 MtrunA17_Chr5g0431421 33.475 236 133 6 235 463 230 448 2.40e-32 128
Msa0021130 MtrunA17_Chr6g0454371 34.595 185 105 4 280 463 1 170 3.74e-32 120
Msa0021130 MtrunA17_Chr3g0106251 32.701 211 123 4 255 463 100 293 4.98e-32 124
Msa0021130 MtrunA17_Chr6g0463891 31.136 273 161 7 206 460 218 481 5.24e-32 127
Msa0021130 MtrunA17_Chr7g0218811 23.605 466 299 12 16 460 17 446 6.09e-32 127
Msa0021130 MtrunA17_Chr3g0079711 35.870 184 110 3 284 460 3 185 6.18e-32 120
Msa0021130 MtrunA17_Chr4g0072771 26.441 503 275 18 5 464 16 466 8.98e-32 126
Msa0021130 MtrunA17_Chr1g0161351 29.429 333 207 8 153 465 175 499 9.62e-32 127
Msa0021130 MtrunA17_Chr7g0218841 30.672 238 135 4 231 461 224 438 1.16e-31 126
Msa0021130 MtrunA17_Chr3g0106231 32.258 217 128 4 250 464 253 452 5.41e-31 124
Msa0021130 MtrunA17_Chr5g0429681 34.894 235 131 11 235 460 275 496 5.96e-31 125
Msa0021130 MtrunA17_Chr5g0416741 30.403 273 163 7 206 460 217 480 3.12e-30 122
Msa0021130 MtrunA17_Chr5g0393591 30.952 210 118 4 257 465 254 437 3.99e-30 122
Msa0021130 MtrunA17_Chr5g0448551 33.803 213 116 6 256 465 258 448 1.69e-29 120
Msa0021130 MtrunA17_Chr4g0066141 41.104 163 86 4 308 460 186 348 5.59e-29 117
Msa0021130 MtrunA17_Chr8g0367221 24.295 461 285 12 15 440 13 444 1.33e-27 117
Msa0021130 MtrunA17_Chr8g0367221 33.871 186 108 3 259 440 1547 1721 2.73e-25 110
Msa0021130 MtrunA17_Chr8g0367221 34.615 182 112 4 259 440 1057 1231 5.96e-25 108
Msa0021130 MtrunA17_Chr8g0336251 32.422 256 140 9 217 461 223 456 6.25e-27 112
Msa0021130 MtrunA17_Chr6g0482061 31.364 220 138 6 236 450 255 466 7.44e-27 112
Msa0021130 MtrunA17_Chr8g0336321 32.422 256 140 9 217 461 223 456 8.00e-27 112
Msa0021130 MtrunA17_Chr3g0092031 33.708 178 103 4 260 435 6 170 1.01e-26 107
Msa0021130 MtrunA17_Chr6g0464091 34.872 195 102 5 203 389 219 396 1.08e-26 112
Msa0021130 MtrunA17_Chr5g0416821 30.258 271 154 8 206 460 219 470 1.36e-26 112
Msa0021130 MtrunA17_Chr2g0278721 25.263 475 280 18 7 438 510 952 2.13e-26 113
Msa0021130 MtrunA17_Chr2g0278721 28.413 271 166 8 203 465 214 464 2.35e-25 109
Msa0021130 MtrunA17_Chr2g0302851 34.066 182 103 4 260 438 270 437 7.51e-26 109
Msa0021130 MtrunA17_Chr4g0039881 32.796 186 110 4 260 443 246 418 8.24e-26 109
Msa0021130 MtrunA17_Chr5g0431431 24.882 422 229 14 15 428 11 352 1.05e-25 107
Msa0021130 MtrunA17_Chr6g0466831 28.916 249 157 6 201 443 210 444 1.36e-25 108
Msa0021130 MtrunA17_Chr6g0466841 32.292 192 115 3 201 389 210 389 1.37e-25 108
Msa0021130 MtrunA17_Chr2g0278741 32.778 180 108 3 260 438 356 523 2.77e-25 108
Msa0021130 MtrunA17_Chr4g0069611 28.516 256 150 8 189 435 202 433 3.31e-25 107
Msa0021130 MtrunA17_Chr5g0427571 35.326 184 100 5 254 432 99 268 5.96e-25 104
Msa0021130 MtrunA17_Chr8g0336261 37.500 144 76 3 280 423 1 130 9.14e-25 99.4
Msa0021130 MtrunA17_Chr8g0337381 43.802 121 58 4 335 452 1 114 1.41e-24 98.6
Msa0021130 MtrunA17_Chr1g0196851 25.376 465 290 16 2 437 37 473 4.21e-24 104
Msa0021130 MtrunA17_Chr6g0454231 30.918 207 93 4 258 463 61 218 1.52e-23 103
Msa0021130 MtrunA17_Chr7g0231631 28.413 271 153 8 208 460 9 256 8.47e-23 97.8
Msa0021130 MtrunA17_Chr1g0207881 33.333 132 87 1 334 465 256 386 1.35e-20 93.6
Msa0021130 MtrunA17_Chr4g0040711 31.553 206 132 3 195 400 199 395 1.77e-20 94.0
Msa0021130 MtrunA17_Chr4g0029151 33.862 189 104 5 259 437 264 441 2.17e-20 93.6
Msa0021130 MtrunA17_Chr2g0283041 28.452 239 150 6 195 429 198 419 9.34e-20 91.7
Msa0021130 MtrunA17_Chr4g0029131 29.528 254 151 8 196 437 196 433 9.36e-20 92.4
Msa0021130 MtrunA17_Chr7g0243731 50.746 67 33 0 334 400 7 73 3.84e-19 81.6
Msa0021130 MtrunA17_Chr4g0040691 28.216 241 162 4 195 435 199 428 9.08e-19 88.6
Msa0021130 MtrunA17_Chr2g0319761 26.860 242 162 6 204 442 208 437 1.22e-16 82.0
Msa0021130 MtrunA17_Chr2g0319731 23.922 464 296 15 8 442 19 454 4.29e-15 77.4
Msa0021130 MtrunA17_Chr2g0319801 23.861 461 300 16 8 442 2 437 2.26e-14 75.1
Msa0021130 MtrunA17_Chr7g0243721 34.615 130 71 4 189 309 17 141 7.03e-14 68.9
Msa0021130 MtrunA17_Chr2g0319791 25.417 240 164 6 206 442 210 437 9.92e-14 73.2
Msa0021130 MtrunA17_Chr1g0159561 77.143 35 8 0 431 465 12 46 2.36e-13 64.7
Msa0021130 MtrunA17_Chr2g0319751 25.969 258 172 7 205 459 686 927 3.39e-13 72.0
Msa0021130 MtrunA17_Chr2g0319751 26.721 247 134 8 206 445 210 416 1.48e-12 70.1
Msa0021130 MtrunA17_Chr8g0334841 33.099 142 87 4 170 308 2 138 1.33e-12 65.9
Msa0021130 MtrunA17_Chr6g0454391 35.556 90 58 0 350 439 11 100 3.71e-11 60.5
Msa0021130 MtrunA17_Chr2g0279741 48.276 58 30 0 257 314 33 90 6.03e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021130 AT2G15490.3 28.454 485 308 12 9 463 2 477 2.63e-55 191
Msa0021130 AT2G15490.1 28.484 488 307 12 9 463 2 480 5.40e-55 191
Msa0021130 AT4G34131.1 29.363 487 290 13 15 464 11 480 6.88e-54 188
Msa0021130 AT2G36780.1 30.223 493 287 18 1 452 1 477 1.55e-53 187
Msa0021130 AT2G36770.1 29.303 488 298 15 1 452 1 477 1.01e-51 182
Msa0021130 AT2G15480.1 27.216 485 308 14 12 463 8 480 1.23e-51 182
Msa0021130 AT1G73880.1 28.056 499 292 17 1 464 1 467 2.98e-51 181
Msa0021130 AT2G31750.1 28.776 490 278 17 10 465 4 456 1.15e-49 176
Msa0021130 AT2G31750.2 28.776 490 278 17 10 465 4 456 1.96e-49 176
Msa0021130 AT2G15480.2 26.667 495 308 15 12 463 8 490 3.36e-49 176
Msa0021130 AT3G53160.1 29.792 480 276 17 16 452 10 471 3.39e-49 175
Msa0021130 AT4G34135.1 28.049 492 303 12 5 460 2 478 5.50e-49 175
Msa0021130 AT2G36800.1 27.766 479 288 16 16 452 14 476 2.38e-48 173
Msa0021130 AT2G36760.1 28.870 478 283 16 16 452 16 477 1.84e-47 171
Msa0021130 AT2G36750.1 28.178 472 293 14 16 452 12 472 5.45e-47 169
Msa0021130 AT5G26310.1 30.952 378 223 10 112 455 85 458 5.82e-47 169
Msa0021130 AT5G03490.1 28.238 471 271 15 15 455 20 453 1.06e-46 168
Msa0021130 AT3G16520.3 27.586 464 305 12 15 460 6 456 1.11e-46 168
Msa0021130 AT3G50740.1 32.743 339 191 10 145 452 130 462 1.29e-46 168
Msa0021130 AT4G34138.1 33.910 289 159 7 192 464 207 479 1.45e-46 168
Msa0021130 AT3G11340.1 29.550 467 281 13 14 463 9 444 3.19e-46 166
Msa0021130 AT5G66690.1 33.036 336 193 9 145 452 125 456 3.56e-46 167
Msa0021130 AT4G01070.1 33.447 293 170 6 181 452 168 456 4.28e-46 167
Msa0021130 AT1G10400.1 28.157 483 285 17 12 460 5 459 5.80e-46 166
Msa0021130 AT3G46670.1 38.039 255 143 5 210 463 208 448 6.66e-46 166
Msa0021130 AT1G22340.1 25.813 492 298 14 15 463 14 481 1.79e-45 165
Msa0021130 AT3G16520.1 27.876 452 295 12 15 448 6 444 2.12e-45 164
Msa0021130 AT3G16520.2 27.876 452 295 12 15 448 6 444 2.20e-45 164
Msa0021130 AT1G22360.1 25.966 466 272 15 15 435 11 448 7.29e-45 163
Msa0021130 AT3G46660.1 29.916 478 272 17 15 465 15 456 7.38e-45 163
Msa0021130 AT5G05860.1 29.140 477 285 13 8 463 3 447 3.58e-44 161
Msa0021130 AT1G07250.1 27.557 479 304 16 15 463 7 472 4.22e-44 161
Msa0021130 AT1G51210.1 27.876 452 258 17 15 438 21 432 5.57e-44 160
Msa0021130 AT5G14860.1 27.992 493 287 17 16 465 10 477 5.66e-44 161
Msa0021130 AT4G36770.1 41.784 213 108 5 237 440 235 440 6.51e-44 160
Msa0021130 AT2G16890.2 27.310 487 291 17 15 465 10 469 1.34e-43 160
Msa0021130 AT2G29730.1 26.695 472 312 14 13 463 4 462 2.32e-43 159
Msa0021130 AT1G22380.1 27.039 466 275 17 15 439 14 455 4.82e-43 159
Msa0021130 AT3G46700.1 36.434 258 144 6 210 463 203 444 8.85e-43 157
Msa0021130 AT2G36790.1 28.008 482 282 17 16 452 15 476 9.24e-43 158
Msa0021130 AT1G22400.1 26.552 467 273 15 15 437 14 454 1.67e-42 157
Msa0021130 AT3G46680.1 36.364 253 144 6 210 460 209 446 1.85e-42 156
Msa0021130 AT1G22370.2 27.742 465 260 16 15 435 14 446 2.04e-42 157
Msa0021130 AT3G46650.1 29.847 459 267 17 6 450 2 419 3.30e-42 155
Msa0021130 AT3G55700.1 33.333 327 182 11 153 463 144 450 4.02e-42 155
Msa0021130 AT4G15490.1 28.283 495 281 18 15 465 9 473 5.28e-42 155
Msa0021130 AT5G59590.1 27.677 495 268 19 6 460 2 446 6.54e-42 155
Msa0021130 AT1G78270.1 27.115 461 279 15 16 439 15 455 8.48e-42 155
Msa0021130 AT5G38010.1 27.255 499 269 19 6 460 2 450 1.58e-41 154
Msa0021130 AT3G21800.1 26.908 498 299 18 11 465 2 477 2.78e-41 154
Msa0021130 AT3G53150.1 27.677 495 302 16 16 463 24 509 3.13e-41 154
Msa0021130 AT2G18570.1 27.815 453 281 14 16 439 7 442 4.60e-41 153
Msa0021130 AT3G46690.1 29.598 473 270 18 15 460 10 446 5.86e-41 152
Msa0021130 AT2G29740.1 27.049 488 299 18 10 460 4 471 1.07e-40 152
Msa0021130 AT2G16890.3 29.048 420 237 15 15 400 10 402 1.10e-40 151
Msa0021130 AT5G59580.1 27.389 471 281 18 15 460 10 444 1.22e-40 151
Msa0021130 AT2G23250.1 27.887 459 295 14 17 463 1 435 1.34e-40 151
Msa0021130 AT2G43840.2 26.582 474 288 15 15 463 8 446 1.56e-40 151
Msa0021130 AT2G30140.2 26.360 478 284 16 15 464 14 451 1.72e-40 151
Msa0021130 AT3G21790.1 31.930 285 172 9 195 465 204 480 1.72e-40 152
Msa0021130 AT5G38040.1 34.028 288 163 9 179 460 180 446 1.73e-40 151
Msa0021130 AT2G30140.1 26.514 479 283 16 15 464 14 452 2.08e-40 150
Msa0021130 AT2G43840.1 26.582 474 288 15 15 463 8 446 2.57e-40 150
Msa0021130 AT1G05680.1 37.561 205 114 3 257 461 260 450 3.04e-40 150
Msa0021130 AT4G15480.1 27.406 478 305 14 9 460 14 475 1.98e-39 149
Msa0021130 AT2G30150.2 27.479 484 275 17 15 465 14 454 2.17e-39 148
Msa0021130 AT1G05675.1 37.561 205 114 3 257 461 260 450 2.41e-39 148
Msa0021130 AT1G01390.1 31.699 306 194 7 154 452 159 456 3.44e-39 148
Msa0021130 AT2G23260.1 27.061 473 293 15 15 464 11 454 4.14e-39 147
Msa0021130 AT2G18560.1 36.842 209 113 4 255 452 165 365 4.69e-39 145
Msa0021130 AT1G01390.2 31.699 306 194 7 154 452 176 473 4.84e-39 148
Msa0021130 AT5G05870.1 36.207 232 134 5 235 464 236 455 5.42e-39 147
Msa0021130 AT3G46720.1 37.391 230 122 5 237 463 230 440 5.73e-39 147
Msa0021130 AT2G29710.1 33.452 281 166 9 192 463 194 462 5.74e-39 147
Msa0021130 AT1G07260.1 25.979 485 307 15 10 460 2 468 5.79e-39 147
Msa0021130 AT1G22360.2 24.464 466 267 15 15 435 11 436 6.23e-39 147
Msa0021130 AT5G12890.1 28.862 492 280 22 15 460 11 478 6.59e-39 147
Msa0021130 AT1G01420.1 35.814 215 126 4 250 457 251 460 1.15e-38 146
Msa0021130 AT2G30150.1 27.443 481 273 17 18 465 1 438 1.33e-38 145
Msa0021130 AT1G01420.2 35.814 215 126 4 250 457 254 463 1.33e-38 146
Msa0021130 AT2G31790.1 37.143 210 118 3 256 464 261 457 1.81e-38 145
Msa0021130 AT2G29750.1 26.477 491 293 16 15 463 9 473 2.66e-38 145
Msa0021130 AT1G06000.1 28.875 471 265 18 15 463 11 433 8.25e-38 143
Msa0021130 AT4G15260.1 31.183 279 177 7 195 463 81 354 9.96e-38 141
Msa0021130 AT3G21760.1 37.759 241 137 7 235 465 245 482 1.59e-37 143
Msa0021130 AT3G02100.1 28.195 493 279 17 4 460 3 456 1.70e-37 143
Msa0021130 AT3G21750.1 33.333 240 144 6 235 463 234 468 2.01e-37 143
Msa0021130 AT3G21560.1 24.947 473 312 11 15 460 13 469 2.64e-37 143
Msa0021130 AT4G15500.1 27.311 476 290 17 15 460 10 459 2.79e-37 142
Msa0021130 AT2G43820.1 33.178 214 129 3 250 463 247 446 3.49e-37 142
Msa0021130 AT2G26480.1 35.448 268 141 9 204 460 196 442 1.62e-36 140
Msa0021130 AT1G05560.1 36.596 235 136 6 236 463 223 451 4.40e-36 139
Msa0021130 AT1G05560.2 36.596 235 136 6 236 463 273 501 5.73e-36 139
Msa0021130 AT5G05880.1 35.714 210 123 4 255 464 252 449 2.65e-35 137
Msa0021130 AT4G15280.1 32.636 239 146 6 235 463 240 473 3.80e-35 137
Msa0021130 AT4G15280.2 32.636 239 146 6 235 463 272 505 3.90e-35 137
Msa0021130 AT1G05530.1 28.333 480 274 14 16 460 7 451 5.21e-35 136
Msa0021130 AT3G55710.1 31.832 333 181 13 155 463 144 454 1.35e-34 135
Msa0021130 AT5G17050.1 35.577 208 117 3 232 439 242 432 1.65e-34 134
Msa0021130 AT1G07240.1 33.210 271 155 10 206 463 218 475 2.67e-34 134
Msa0021130 AT1G24100.1 34.906 212 119 5 257 465 265 460 6.07e-34 133
Msa0021130 AT5G65550.1 29.889 271 173 7 173 442 187 441 2.36e-33 131
Msa0021130 AT5G05900.1 36.842 209 113 4 256 464 259 448 5.37e-33 130
Msa0021130 AT3G21780.1 30.605 281 179 8 195 464 194 469 7.20e-33 130
Msa0021130 AT5G49690.1 27.195 467 285 18 7 448 3 439 9.93e-33 129
Msa0021130 AT4G15550.1 35.398 226 137 6 237 460 252 470 1.10e-32 130
Msa0021130 AT5G05890.1 33.810 210 127 4 255 464 256 453 4.89e-32 127
Msa0021130 AT2G36970.1 31.008 258 164 5 206 463 227 470 3.20e-31 125
Msa0021130 AT1G30530.1 32.374 278 160 8 170 442 175 429 7.21e-31 124
Msa0021130 AT1G22370.1 30.000 250 139 7 170 400 15 247 2.14e-30 120
Msa0021130 AT5G17040.2 33.333 210 121 4 232 439 121 313 1.12e-28 116
Msa0021130 AT5G17040.1 33.333 210 121 4 232 439 223 415 1.44e-28 117
Msa0021130 AT5G17030.1 33.333 210 121 4 232 439 239 431 1.89e-28 117
Msa0021130 AT3G22250.1 32.558 215 118 6 241 447 257 452 3.14e-27 114
Msa0021130 AT2G28080.1 31.004 229 142 6 235 460 253 468 3.96e-27 114
Msa0021130 AT4G14090.1 25.840 476 302 18 7 460 6 452 3.57e-26 110
Msa0021130 AT2G22590.1 25.813 492 281 19 15 463 16 466 3.24e-25 108
Msa0021130 AT5G37950.2 45.000 120 59 4 255 374 224 336 1.14e-24 105
Msa0021130 AT5G37950.1 45.000 120 59 4 255 374 230 342 1.25e-24 105
Msa0021130 AT4G27570.1 30.579 242 150 6 206 443 200 427 1.53e-24 106
Msa0021130 AT4G27560.1 29.344 259 161 7 206 460 200 440 2.28e-23 102
Msa0021130 AT1G64910.1 30.180 222 133 5 212 421 200 411 1.40e-21 97.4
Msa0021130 AT1G50580.1 24.146 439 296 13 16 442 8 421 2.42e-20 93.6
Msa0021130 AT5G53990.1 28.205 234 150 6 213 442 201 420 5.60e-20 92.4
Msa0021130 AT5G54060.1 23.975 488 312 18 1 459 1 458 6.79e-20 92.4
Msa0021130 AT3G29630.1 28.936 235 150 6 213 442 201 423 9.95e-20 91.7
Msa0021130 AT5G54010.1 28.085 235 151 6 212 442 206 426 5.62e-19 89.7
Msa0021130 AT3G29630.2 30.319 188 116 4 260 442 220 397 9.01e-19 88.6
Msa0021130 AT1G64920.1 28.750 240 149 7 212 443 200 425 5.69e-17 83.6
Msa0021130 AT4G34135.2 24.545 330 214 9 5 304 2 326 1.54e-16 81.3
Msa0021130 AT2G22930.1 24.576 236 160 5 212 443 200 421 1.96e-14 75.5
Msa0021130 AT4G09500.2 24.464 233 162 5 212 442 200 420 2.60e-13 72.0
Msa0021130 AT4G09500.1 25.946 185 127 3 260 442 219 395 4.13e-13 71.2
Msa0021130 AT4G01070.2 30.000 140 80 3 181 304 168 305 2.12e-11 65.5

Find 115 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACATATATAACTGAATT+TGG 0.191304 1_1:+37318133 None:intergenic
TATTATTGATGTTCCTTCTA+TGG 0.206414 1_1:-37318401 Msa0021130:CDS
AAAGCAAGATAAAGTTCATT+TGG 0.300854 1_1:-37318048 Msa0021130:CDS
TCAGTTATATATGTATCTTT+TGG 0.303540 1_1:-37318127 Msa0021130:CDS
TGGATGTTTGAAATGGAGTT+TGG 0.309843 1_1:+37318739 None:intergenic
AAATGCTATTGCTATGTCTA+TGG 0.315928 1_1:-37317612 Msa0021130:CDS
GAAATTGAACAGATTGCAAC+TGG 0.321867 1_1:-37318079 Msa0021130:CDS
TGGGGTTTGTTGTGAGAGAT+TGG 0.327888 1_1:-37317931 Msa0021130:CDS
GAACTTTGAAGTGATGAAAA+TGG 0.343793 1_1:+37318719 None:intergenic
AAACAAATTTCCTTCTCATA+TGG 0.344813 1_1:-37318659 Msa0021130:CDS
GAAGAGAGAGTCGAAGGAAT+GGG 0.349553 1_1:-37317950 Msa0021130:CDS
GTTATGAAAACACAGTTTCT+TGG 0.362092 1_1:+37317779 None:intergenic
CGGAGTTTCTCGTATGGAAA+TGG 0.376259 1_1:-37317582 Msa0021130:CDS
TTCTTCTTCTCAATGGTAAG+AGG 0.385858 1_1:+37318205 None:intergenic
TTCTCTATCAACTCCAAGTA+AGG 0.388992 1_1:+37318271 None:intergenic
TTCAATTTCTTCATCTGTCA+AGG 0.395467 1_1:+37318093 None:intergenic
TGCATAGGCCATGCTGCTAT+TGG 0.399298 1_1:+37317812 None:intergenic
TGAATCTTTCTTCTTCTCAA+TGG 0.406758 1_1:+37318198 None:intergenic
AAGCAAGATAAAGTTCATTT+GGG 0.407817 1_1:-37318047 Msa0021130:CDS
ATAACACAAGTGTTAAAGAT+TGG 0.408364 1_1:-37317761 Msa0021130:CDS
TTGGTTTGGTTGTGATGGAT+TGG 0.410463 1_1:-37317742 Msa0021130:CDS
ATATTGAGAATGTTGTTAGA+AGG 0.414109 1_1:-37317688 Msa0021130:CDS
GACATATTTGATGGAAATGA+AGG 0.416310 1_1:-37318001 Msa0021130:CDS
TACTTTAGAGAGCATTTCAA+TGG 0.416904 1_1:-37317840 Msa0021130:CDS
CTCAATGGTAAGAGGGTTGA+AGG 0.419504 1_1:+37318213 None:intergenic
TGGTTTGGTTGTGATGGATT+GGG 0.419694 1_1:-37317741 Msa0021130:CDS
CACTTCCATTTGGGAGAAAG+TGG 0.420202 1_1:-37318449 Msa0021130:CDS
GAATGTTGTTAGAAGGTTGA+TGG 0.422088 1_1:-37317681 Msa0021130:CDS
ATGAAAATGGATGTTTGAAA+TGG 0.430739 1_1:+37318732 None:intergenic
TGAAGAGAGAGTCGAAGGAA+TGG 0.432628 1_1:-37317951 Msa0021130:CDS
GATAAAGGAGACATATTTGA+TGG 0.433480 1_1:-37318010 Msa0021130:CDS
ACAAGTGTTAAAGATTGGTT+TGG 0.437278 1_1:-37317756 Msa0021130:CDS
CTCATAAACCCTCCTGTTGA+AGG 0.439840 1_1:+37317881 None:intergenic
CACAATTCGTGTCCAAGGTT+GGG 0.441997 1_1:-37318764 Msa0021130:CDS
AAGCATCCATCCTCCATAGA+AGG 0.444404 1_1:+37318388 None:intergenic
AGTCATTGAAAGTCCTTACT+TGG 0.449851 1_1:-37318284 Msa0021130:CDS
TGTGGCTTGACGGTTGTGTA+TGG 0.451619 1_1:+37318783 None:intergenic
ATTCTAAGCCACCCTTCAAC+AGG 0.453025 1_1:-37317893 Msa0021130:CDS
GGTGGCTTAGAATTTCCAAC+TGG 0.456955 1_1:+37317903 None:intergenic
TGATTCAAATGGCCTTGTGC+TGG 0.461900 1_1:+37318868 None:intergenic
TGTGAAGAGGCTAGAAAAGA+AGG 0.463650 1_1:+37318634 None:intergenic
TGTGATTCATGATAGTCTAA+TGG 0.466885 1_1:-37318551 Msa0021130:CDS
TCACTTGCAGTAAGAAGCAT+TGG 0.474174 1_1:-37318246 Msa0021130:CDS
TCTGCATTTGGGTTAGGAGG+AGG 0.476547 1_1:+37318682 None:intergenic
AGTGTAGAAGTTGATTCAAA+TGG 0.477475 1_1:+37318857 None:intergenic
CCACAATTCGTGTCCAAGGT+TGG 0.481755 1_1:-37318765 Msa0021130:CDS
ACTTTAGAGAGCATTTCAAT+GGG 0.492782 1_1:-37317839 Msa0021130:CDS
TGAAAACACAGTTTCTTGGC+TGG 0.493749 1_1:+37317783 None:intergenic
TCTTCTTCTCAATGGTAAGA+GGG 0.495022 1_1:+37318206 None:intergenic
GGGGTTTGTTGTGAGAGATT+GGG 0.496692 1_1:-37317930 Msa0021130:CDS
GGGTTTGAAGAGAGAGTCGA+AGG 0.497377 1_1:-37317956 Msa0021130:CDS
AAAAGAGGTGAACTTGCAAA+AGG 0.500030 1_1:-37317977 Msa0021130:CDS
AAGAGAGAGTCGAAGGAATG+GGG 0.502112 1_1:-37317949 Msa0021130:CDS
CAGTAAGAAGCATTGGGCAG+TGG 0.505058 1_1:-37318239 Msa0021130:CDS
TTGGGCTAAAAGACATGAGT+TGG 0.507135 1_1:-37317723 Msa0021130:CDS
TGAACAGATTGCAACTGGGT+TGG 0.509228 1_1:-37318074 Msa0021130:CDS
TGAGAAGAAGAAAGATTCAA+AGG 0.511117 1_1:-37318194 Msa0021130:CDS
AAACCAAGTGGTGGTTATTG+TGG 0.512648 1_1:-37318899 Msa0021130:CDS
AAAGATTGGTTTGGTTGTGA+TGG 0.513574 1_1:-37317747 Msa0021130:CDS
TGGAGTTTGGATCCCAACCT+TGG 0.514412 1_1:+37318752 None:intergenic
GTGTTGAGAGATGCTGATAA+AGG 0.522956 1_1:-37318025 Msa0021130:CDS
GAGAGATTGGGCACCCCAGT+TGG 0.524518 1_1:-37317918 Msa0021130:CDS
GAGAAGAAGAAAGATTCAAA+GGG 0.527233 1_1:-37318193 Msa0021130:CDS
GGACACGAATTGTGGCTTGA+CGG 0.534984 1_1:+37318773 None:intergenic
AACATACCTGTCCACTATGT+TGG 0.535911 1_1:-37318811 Msa0021130:CDS
GAATTCTATGCATTAAGTGA+TGG 0.537800 1_1:-37318328 Msa0021130:CDS
CCAACCTTGGACACGAATTG+TGG 0.545534 1_1:+37318765 None:intergenic
TTAGGAGGAGGTGAAACAAA+GGG 0.545800 1_1:+37318694 None:intergenic
ATAATATGCGAGCTTTCAAT+CGG 0.549850 1_1:+37318418 None:intergenic
GATGGAAATGAAGGGAAAAG+AGG 0.550269 1_1:-37317992 Msa0021130:CDS
GGTTTATGAGTCATTGTGGA+TGG 0.552414 1_1:-37317868 Msa0021130:CDS
AATTCTATGCATTAAGTGAT+GGG 0.555471 1_1:-37318327 Msa0021130:CDS
TAGAAGGTTGATGGATACAA+AGG 0.557592 1_1:-37317672 Msa0021130:CDS
GTTAGGAGGAGGTGAAACAA+AGG 0.561610 1_1:+37318693 None:intergenic
AAATGGCCTTGTGCTGGGAA+AGG 0.563121 1_1:+37318874 None:intergenic
TGAAGGCGGAGTTTCTCGTA+TGG 0.566340 1_1:-37317588 Msa0021130:CDS
GATTCAAATGGCCTTGTGCT+GGG 0.566341 1_1:+37318869 None:intergenic
CACTTGCAGTAAGAAGCATT+GGG 0.567603 1_1:-37318245 Msa0021130:CDS
AGTAAGAAGCATTGGGCAGT+GGG 0.570505 1_1:-37318238 Msa0021130:CDS
CAAGCCACAATTCGTGTCCA+AGG 0.576817 1_1:-37318769 Msa0021130:CDS
ATTGCTATGTCTATGGATGA+AGG 0.578614 1_1:-37317605 Msa0021130:CDS
ATATGCGAGCTTTCAATCGG+AGG 0.580434 1_1:+37318421 None:intergenic
GATGTTCCTTCTATGGAGGA+TGG 0.581305 1_1:-37318394 Msa0021130:CDS
AAAGAAGGAACCATATGAGA+AGG 0.581429 1_1:+37318649 None:intergenic
AGAAGAAAGATTCAAAGGGT+AGG 0.582116 1_1:-37318189 Msa0021130:CDS
TATTGATGTTCCTTCTATGG+AGG 0.586205 1_1:-37318398 Msa0021130:CDS
CTAAGCCACCCTTCAACAGG+AGG 0.589679 1_1:-37317890 Msa0021130:CDS
GAAGTGCCAACATAGTGGAC+AGG 0.589914 1_1:+37318805 None:intergenic
ACTTCCATTTGGGAGAAAGT+GGG 0.590924 1_1:-37318448 Msa0021130:CDS
AAAGAGGTGAACTTGCAAAA+GGG 0.594152 1_1:-37317976 Msa0021130:CDS
CTTGGCTGGTCAGAATGCAT+AGG 0.594768 1_1:+37317797 None:intergenic
GTGGTACCTTTCCCAGCACA+AGG 0.595372 1_1:-37318880 Msa0021130:CDS
AAAGGGTAGGCATTCATGCA+TGG 0.596424 1_1:-37318176 Msa0021130:CDS
TGATAGTCTAATGGCATCAG+TGG 0.597756 1_1:-37318542 Msa0021130:CDS
TTTAGAGAGCATTTCAATGG+GGG 0.598140 1_1:-37317837 Msa0021130:CDS
TCATAAACCCTCCTGTTGAA+GGG 0.598229 1_1:+37317882 None:intergenic
GTAGGCATTCATGCATGGAA+TGG 0.601849 1_1:-37318171 Msa0021130:CDS
AGCTCACCAATGGCTTCCAA+TGG 0.605157 1_1:-37318937 None:intergenic
TTCACATCTTCGTGAGCCAG+TGG 0.606950 1_1:-37318617 Msa0021130:CDS
GGAGGGTTTATGAGTCATTG+TGG 0.608894 1_1:-37317872 Msa0021130:CDS
ACATATTTGATGGAAATGAA+GGG 0.609450 1_1:-37318000 Msa0021130:CDS
AGGTTGATGGATACAAAGGA+AGG 0.624480 1_1:-37317668 Msa0021130:CDS
TAAGCCACCCTTCAACAGGA+GGG 0.627491 1_1:-37317889 Msa0021130:CDS
TAAACCCTCCTGTTGAAGGG+TGG 0.642797 1_1:+37317885 None:intergenic
GATTGCATGAGTTCTACCAC+TGG 0.642870 1_1:+37318601 None:intergenic
GTACCACAATAACCACCACT+TGG 0.645127 1_1:+37318896 None:intergenic
TCAATGGTAAGAGGGTTGAA+GGG 0.646857 1_1:+37318214 None:intergenic
TGGCTCACGAAGATGTGAAG+AGG 0.654412 1_1:+37318621 None:intergenic
GTGGCTTAGAATTTCCAACT+GGG 0.655159 1_1:+37317904 None:intergenic
CTTTAGAGAGCATTTCAATG+GGG 0.668610 1_1:-37317838 Msa0021130:CDS
TGGCTTAGAATTTCCAACTG+GGG 0.674557 1_1:+37317905 None:intergenic
GTATGGAAGTGCCAACATAG+TGG 0.679090 1_1:+37318800 None:intergenic
AAATTGAACAGATTGCAACT+GGG 0.679302 1_1:-37318078 Msa0021130:CDS
GCTATGTCTATGGATGAAGG+CGG 0.726454 1_1:-37317602 Msa0021130:CDS
GGAGGAGGTGAAACAAAGGG+AGG 0.734329 1_1:+37318697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATACATATATAACTGAATT+TGG + chr1_1:37318351-37318370 None:intergenic 20.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_1:37318354-37318373 Msa0021130:CDS 20.0%
!! GATACATATATAACTGAATT+TGG + chr1_1:37318351-37318370 None:intergenic 20.0%
!!! TCAGTTATATATGTATCTTT+TGG - chr1_1:37318354-37318373 Msa0021130:CDS 20.0%
!!! CTTGGTTTTTTGATTTGTTT+TGG + chr1_1:37317570-37317589 None:intergenic 25.0%
! AAACAAATCAAAAAACCAAG+TGG - chr1_1:37317570-37317589 Msa0021130:CDS 25.0%
! ATGAAAATGGATGTTTGAAA+TGG + chr1_1:37317752-37317771 None:intergenic 25.0%
!!! GAAATTTGTTTTCTGCATTT+GGG + chr1_1:37317813-37317832 None:intergenic 25.0%
! AAACAAATTTCCTTCTCATA+TGG - chr1_1:37317822-37317841 Msa0021130:CDS 25.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_1:37317903-37317922 Msa0021130:CDS 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_1:37318022-37318041 Msa0021130:CDS 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_1:37318023-37318042 Msa0021130:CDS 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_1:37318080-37318099 Msa0021130:CDS 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_1:37318154-37318173 Msa0021130:CDS 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_1:37318433-37318452 Msa0021130:CDS 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_1:37318434-37318453 Msa0021130:CDS 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_1:37318481-37318500 Msa0021130:CDS 25.0%
! ATAACACAAGTGTTAAAGAT+TGG - chr1_1:37318720-37318739 Msa0021130:CDS 25.0%
! ATATTGAGAATGTTGTTAGA+AGG - chr1_1:37318793-37318812 Msa0021130:CDS 25.0%
!!! CTTGGTTTTTTGATTTGTTT+TGG + chr1_1:37317570-37317589 None:intergenic 25.0%
! AAACAAATCAAAAAACCAAG+TGG - chr1_1:37317570-37317589 Msa0021130:CDS 25.0%
! ATGAAAATGGATGTTTGAAA+TGG + chr1_1:37317752-37317771 None:intergenic 25.0%
!!! GAAATTTGTTTTCTGCATTT+GGG + chr1_1:37317813-37317832 None:intergenic 25.0%
! AAACAAATTTCCTTCTCATA+TGG - chr1_1:37317822-37317841 Msa0021130:CDS 25.0%
!! ACTTTCATCTGTTTTCAAAA+GGG - chr1_1:37317903-37317922 Msa0021130:CDS 25.0%
!! TTACAATTTTCACTTCCATT+TGG - chr1_1:37318022-37318041 Msa0021130:CDS 25.0%
!! TACAATTTTCACTTCCATTT+GGG - chr1_1:37318023-37318042 Msa0021130:CDS 25.0%
! TATTATTGATGTTCCTTCTA+TGG - chr1_1:37318080-37318099 Msa0021130:CDS 25.0%
! AATTCTATGCATTAAGTGAT+GGG - chr1_1:37318154-37318173 Msa0021130:CDS 25.0%
! AAAGCAAGATAAAGTTCATT+TGG - chr1_1:37318433-37318452 Msa0021130:CDS 25.0%
! AAGCAAGATAAAGTTCATTT+GGG - chr1_1:37318434-37318453 Msa0021130:CDS 25.0%
! ACATATTTGATGGAAATGAA+GGG - chr1_1:37318481-37318500 Msa0021130:CDS 25.0%
! ATAACACAAGTGTTAAAGAT+TGG - chr1_1:37318720-37318739 Msa0021130:CDS 25.0%
! ATATTGAGAATGTTGTTAGA+AGG - chr1_1:37318793-37318812 Msa0021130:CDS 25.0%
!!! TTTTGATTTGTTTTGGCCAT+TGG + chr1_1:37317563-37317582 None:intergenic 30.0%
! AGTGTAGAAGTTGATTCAAA+TGG + chr1_1:37317627-37317646 None:intergenic 30.0%
!! GAACTTTGAAGTGATGAAAA+TGG + chr1_1:37317765-37317784 None:intergenic 30.0%
!! GGAAATTTGTTTTCTGCATT+TGG + chr1_1:37317814-37317833 None:intergenic 30.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_1:37317902-37317921 Msa0021130:CDS 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_1:37317930-37317949 Msa0021130:CDS 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_1:37318066-37318085 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_1:37318153-37318172 Msa0021130:CDS 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_1:37318286-37318305 None:intergenic 30.0%
TGAGAAGAAGAAAGATTCAA+AGG - chr1_1:37318287-37318306 Msa0021130:CDS 30.0%
GAGAAGAAGAAAGATTCAAA+GGG - chr1_1:37318288-37318307 Msa0021130:CDS 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_1:37318391-37318410 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_1:37318403-37318422 Msa0021130:CDS 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_1:37318471-37318490 Msa0021130:CDS 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_1:37318480-37318499 Msa0021130:CDS 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_1:37318641-37318660 Msa0021130:CDS 30.0%
!! ACTTTAGAGAGCATTTCAAT+GGG - chr1_1:37318642-37318661 Msa0021130:CDS 30.0%
GTTATGAAAACACAGTTTCT+TGG + chr1_1:37318705-37318724 None:intergenic 30.0%
! ACAAGTGTTAAAGATTGGTT+TGG - chr1_1:37318725-37318744 Msa0021130:CDS 30.0%
AAATGCTATTGCTATGTCTA+TGG - chr1_1:37318869-37318888 Msa0021130:CDS 30.0%
!!! TTTTGATTTGTTTTGGCCAT+TGG + chr1_1:37317563-37317582 None:intergenic 30.0%
! AGTGTAGAAGTTGATTCAAA+TGG + chr1_1:37317627-37317646 None:intergenic 30.0%
!! GAACTTTGAAGTGATGAAAA+TGG + chr1_1:37317765-37317784 None:intergenic 30.0%
!! GGAAATTTGTTTTCTGCATT+TGG + chr1_1:37317814-37317833 None:intergenic 30.0%
! CACTTTCATCTGTTTTCAAA+AGG - chr1_1:37317902-37317921 Msa0021130:CDS 30.0%
TGTGATTCATGATAGTCTAA+TGG - chr1_1:37317930-37317949 Msa0021130:CDS 30.0%
ATAATATGCGAGCTTTCAAT+CGG + chr1_1:37318066-37318085 None:intergenic 30.0%
GAATTCTATGCATTAAGTGA+TGG - chr1_1:37318153-37318172 Msa0021130:CDS 30.0%
TGAATCTTTCTTCTTCTCAA+TGG + chr1_1:37318286-37318305 None:intergenic 30.0%
TGAGAAGAAGAAAGATTCAA+AGG - chr1_1:37318287-37318306 Msa0021130:CDS 30.0%
GAGAAGAAGAAAGATTCAAA+GGG - chr1_1:37318288-37318307 Msa0021130:CDS 30.0%
TTCAATTTCTTCATCTGTCA+AGG + chr1_1:37318391-37318410 None:intergenic 30.0%
AAATTGAACAGATTGCAACT+GGG - chr1_1:37318403-37318422 Msa0021130:CDS 30.0%
GATAAAGGAGACATATTTGA+TGG - chr1_1:37318471-37318490 Msa0021130:CDS 30.0%
GACATATTTGATGGAAATGA+AGG - chr1_1:37318480-37318499 Msa0021130:CDS 30.0%
!! TACTTTAGAGAGCATTTCAA+TGG - chr1_1:37318641-37318660 Msa0021130:CDS 30.0%
!! ACTTTAGAGAGCATTTCAAT+GGG - chr1_1:37318642-37318661 Msa0021130:CDS 30.0%
GTTATGAAAACACAGTTTCT+TGG + chr1_1:37318705-37318724 None:intergenic 30.0%
! ACAAGTGTTAAAGATTGGTT+TGG - chr1_1:37318725-37318744 Msa0021130:CDS 30.0%
AAATGCTATTGCTATGTCTA+TGG - chr1_1:37318869-37318888 Msa0021130:CDS 30.0%
CAAATCAAAAAACCAAGTGG+TGG - chr1_1:37317573-37317592 Msa0021130:CDS 35.0%
! TGGATGTTTGAAATGGAGTT+TGG + chr1_1:37317745-37317764 None:intergenic 35.0%
!! TTGTTTTCTGCATTTGGGTT+AGG + chr1_1:37317808-37317827 None:intergenic 35.0%
AAAGAAGGAACCATATGAGA+AGG + chr1_1:37317835-37317854 None:intergenic 35.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_1:37318083-37318102 Msa0021130:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_1:37318197-37318216 Msa0021130:CDS 35.0%
TTCTCTATCAACTCCAAGTA+AGG + chr1_1:37318213-37318232 None:intergenic 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_1:37318278-37318297 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_1:37318279-37318298 None:intergenic 35.0%
AGAAGAAAGATTCAAAGGGT+AGG - chr1_1:37318292-37318311 Msa0021130:CDS 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_1:37318402-37318421 Msa0021130:CDS 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_1:37318504-37318523 Msa0021130:CDS 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_1:37318505-37318524 Msa0021130:CDS 35.0%
!! CTTTAGAGAGCATTTCAATG+GGG - chr1_1:37318643-37318662 Msa0021130:CDS 35.0%
!! TTTAGAGAGCATTTCAATGG+GGG - chr1_1:37318644-37318663 Msa0021130:CDS 35.0%
!! AAAGATTGGTTTGGTTGTGA+TGG - chr1_1:37318734-37318753 Msa0021130:CDS 35.0%
GAATGTTGTTAGAAGGTTGA+TGG - chr1_1:37318800-37318819 Msa0021130:CDS 35.0%
!! TAGAAGGTTGATGGATACAA+AGG - chr1_1:37318809-37318828 Msa0021130:CDS 35.0%
ATTGCTATGTCTATGGATGA+AGG - chr1_1:37318876-37318895 Msa0021130:CDS 35.0%
CAAATCAAAAAACCAAGTGG+TGG - chr1_1:37317573-37317592 Msa0021130:CDS 35.0%
! TGGATGTTTGAAATGGAGTT+TGG + chr1_1:37317745-37317764 None:intergenic 35.0%
!! TTGTTTTCTGCATTTGGGTT+AGG + chr1_1:37317808-37317827 None:intergenic 35.0%
AAAGAAGGAACCATATGAGA+AGG + chr1_1:37317835-37317854 None:intergenic 35.0%
TATTGATGTTCCTTCTATGG+AGG - chr1_1:37318083-37318102 Msa0021130:CDS 35.0%
AGTCATTGAAAGTCCTTACT+TGG - chr1_1:37318197-37318216 Msa0021130:CDS 35.0%
TTCTCTATCAACTCCAAGTA+AGG + chr1_1:37318213-37318232 None:intergenic 35.0%
TCTTCTTCTCAATGGTAAGA+GGG + chr1_1:37318278-37318297 None:intergenic 35.0%
TTCTTCTTCTCAATGGTAAG+AGG + chr1_1:37318279-37318298 None:intergenic 35.0%
AGAAGAAAGATTCAAAGGGT+AGG - chr1_1:37318292-37318311 Msa0021130:CDS 35.0%
GAAATTGAACAGATTGCAAC+TGG - chr1_1:37318402-37318421 Msa0021130:CDS 35.0%
AAAAGAGGTGAACTTGCAAA+AGG - chr1_1:37318504-37318523 Msa0021130:CDS 35.0%
AAAGAGGTGAACTTGCAAAA+GGG - chr1_1:37318505-37318524 Msa0021130:CDS 35.0%
!! CTTTAGAGAGCATTTCAATG+GGG - chr1_1:37318643-37318662 Msa0021130:CDS 35.0%
!! TTTAGAGAGCATTTCAATGG+GGG - chr1_1:37318644-37318663 Msa0021130:CDS 35.0%
!! AAAGATTGGTTTGGTTGTGA+TGG - chr1_1:37318734-37318753 Msa0021130:CDS 35.0%
GAATGTTGTTAGAAGGTTGA+TGG - chr1_1:37318800-37318819 Msa0021130:CDS 35.0%
!! TAGAAGGTTGATGGATACAA+AGG - chr1_1:37318809-37318828 Msa0021130:CDS 35.0%
ATTGCTATGTCTATGGATGA+AGG - chr1_1:37318876-37318895 Msa0021130:CDS 35.0%
AAACCAAGTGGTGGTTATTG+TGG - chr1_1:37317582-37317601 Msa0021130:CDS 40.0%
AACATACCTGTCCACTATGT+TGG - chr1_1:37317670-37317689 Msa0021130:CDS 40.0%
TTAGGAGGAGGTGAAACAAA+GGG + chr1_1:37317790-37317809 None:intergenic 40.0%
!! TTTTCTGCATTTGGGTTAGG+AGG + chr1_1:37317805-37317824 None:intergenic 40.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_1:37317850-37317869 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_1:37317939-37317958 Msa0021130:CDS 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_1:37318033-37318052 Msa0021130:CDS 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_1:37318040-37318059 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_1:37318235-37318254 Msa0021130:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_1:37318236-37318255 Msa0021130:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_1:37318270-37318289 None:intergenic 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_1:37318456-37318475 Msa0021130:CDS 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_1:37318489-37318508 Msa0021130:CDS 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_1:37318579-37318598 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_1:37318580-37318599 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_1:37318602-37318621 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_1:37318613-37318632 Msa0021130:CDS 40.0%
TGAAAACACAGTTTCTTGGC+TGG + chr1_1:37318701-37318720 None:intergenic 40.0%
!! TTGGTTTGGTTGTGATGGAT+TGG - chr1_1:37318739-37318758 Msa0021130:CDS 40.0%
!! TGGTTTGGTTGTGATGGATT+GGG - chr1_1:37318740-37318759 Msa0021130:CDS 40.0%
TTGGGCTAAAAGACATGAGT+TGG - chr1_1:37318758-37318777 Msa0021130:CDS 40.0%
!! AGGTTGATGGATACAAAGGA+AGG - chr1_1:37318813-37318832 Msa0021130:CDS 40.0%
AAACCAAGTGGTGGTTATTG+TGG - chr1_1:37317582-37317601 Msa0021130:CDS 40.0%
AACATACCTGTCCACTATGT+TGG - chr1_1:37317670-37317689 Msa0021130:CDS 40.0%
TTAGGAGGAGGTGAAACAAA+GGG + chr1_1:37317790-37317809 None:intergenic 40.0%
!! TTTTCTGCATTTGGGTTAGG+AGG + chr1_1:37317805-37317824 None:intergenic 40.0%
TGTGAAGAGGCTAGAAAAGA+AGG + chr1_1:37317850-37317869 None:intergenic 40.0%
TGATAGTCTAATGGCATCAG+TGG - chr1_1:37317939-37317958 Msa0021130:CDS 40.0%
ACTTCCATTTGGGAGAAAGT+GGG - chr1_1:37318033-37318052 Msa0021130:CDS 40.0%
! TTTTCCCACTTTCTCCCAAA+TGG + chr1_1:37318040-37318059 None:intergenic 40.0%
! TCACTTGCAGTAAGAAGCAT+TGG - chr1_1:37318235-37318254 Msa0021130:CDS 40.0%
!! CACTTGCAGTAAGAAGCATT+GGG - chr1_1:37318236-37318255 Msa0021130:CDS 40.0%
TCAATGGTAAGAGGGTTGAA+GGG + chr1_1:37318270-37318289 None:intergenic 40.0%
GTGTTGAGAGATGCTGATAA+AGG - chr1_1:37318456-37318475 Msa0021130:CDS 40.0%
GATGGAAATGAAGGGAAAAG+AGG - chr1_1:37318489-37318508 Msa0021130:CDS 40.0%
TGGCTTAGAATTTCCAACTG+GGG + chr1_1:37318579-37318598 None:intergenic 40.0%
GTGGCTTAGAATTTCCAACT+GGG + chr1_1:37318580-37318599 None:intergenic 40.0%
TCATAAACCCTCCTGTTGAA+GGG + chr1_1:37318602-37318621 None:intergenic 40.0%
GGTTTATGAGTCATTGTGGA+TGG - chr1_1:37318613-37318632 Msa0021130:CDS 40.0%
TGAAAACACAGTTTCTTGGC+TGG + chr1_1:37318701-37318720 None:intergenic 40.0%
!! TTGGTTTGGTTGTGATGGAT+TGG - chr1_1:37318739-37318758 Msa0021130:CDS 40.0%
!! TGGTTTGGTTGTGATGGATT+GGG - chr1_1:37318740-37318759 Msa0021130:CDS 40.0%
TTGGGCTAAAAGACATGAGT+TGG - chr1_1:37318758-37318777 Msa0021130:CDS 40.0%
!! AGGTTGATGGATACAAAGGA+AGG - chr1_1:37318813-37318832 Msa0021130:CDS 40.0%
GTACCACAATAACCACCACT+TGG + chr1_1:37317588-37317607 None:intergenic 45.0%
!! GATTCAAATGGCCTTGTGCT+GGG + chr1_1:37317615-37317634 None:intergenic 45.0%
!! TGATTCAAATGGCCTTGTGC+TGG + chr1_1:37317616-37317635 None:intergenic 45.0%
!! GTATGGAAGTGCCAACATAG+TGG + chr1_1:37317684-37317703 None:intergenic 45.0%
CACAATTCGTGTCCAAGGTT+GGG - chr1_1:37317717-37317736 Msa0021130:CDS 45.0%
GTTAGGAGGAGGTGAAACAA+AGG + chr1_1:37317791-37317810 None:intergenic 45.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_1:37317883-37317902 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_1:37318032-37318051 Msa0021130:CDS 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_1:37318063-37318082 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_1:37318087-37318106 Msa0021130:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_1:37318096-37318115 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_1:37318243-37318262 Msa0021130:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_1:37318271-37318290 None:intergenic 45.0%
AAAGGGTAGGCATTCATGCA+TGG - chr1_1:37318305-37318324 Msa0021130:CDS 45.0%
GTAGGCATTCATGCATGGAA+TGG - chr1_1:37318310-37318329 Msa0021130:CDS 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_1:37318407-37318426 Msa0021130:CDS 45.0%
TGAAGAGAGAGTCGAAGGAA+TGG - chr1_1:37318530-37318549 Msa0021130:CDS 45.0%
GAAGAGAGAGTCGAAGGAAT+GGG - chr1_1:37318531-37318550 Msa0021130:CDS 45.0%
AAGAGAGAGTCGAAGGAATG+GGG - chr1_1:37318532-37318551 Msa0021130:CDS 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_1:37318550-37318569 Msa0021130:CDS 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_1:37318551-37318570 Msa0021130:CDS 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_1:37318581-37318600 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_1:37318588-37318607 Msa0021130:CDS 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_1:37318603-37318622 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_1:37318609-37318628 Msa0021130:CDS 45.0%
GCTATGTCTATGGATGAAGG+CGG - chr1_1:37318879-37318898 Msa0021130:CDS 45.0%
CGGAGTTTCTCGTATGGAAA+TGG - chr1_1:37318899-37318918 Msa0021130:CDS 45.0%
GTACCACAATAACCACCACT+TGG + chr1_1:37317588-37317607 None:intergenic 45.0%
!! GATTCAAATGGCCTTGTGCT+GGG + chr1_1:37317615-37317634 None:intergenic 45.0%
!! TGATTCAAATGGCCTTGTGC+TGG + chr1_1:37317616-37317635 None:intergenic 45.0%
!! GTATGGAAGTGCCAACATAG+TGG + chr1_1:37317684-37317703 None:intergenic 45.0%
CACAATTCGTGTCCAAGGTT+GGG - chr1_1:37317717-37317736 Msa0021130:CDS 45.0%
GTTAGGAGGAGGTGAAACAA+AGG + chr1_1:37317791-37317810 None:intergenic 45.0%
GATTGCATGAGTTCTACCAC+TGG + chr1_1:37317883-37317902 None:intergenic 45.0%
CACTTCCATTTGGGAGAAAG+TGG - chr1_1:37318032-37318051 Msa0021130:CDS 45.0%
ATATGCGAGCTTTCAATCGG+AGG + chr1_1:37318063-37318082 None:intergenic 45.0%
GATGTTCCTTCTATGGAGGA+TGG - chr1_1:37318087-37318106 Msa0021130:CDS 45.0%
AAGCATCCATCCTCCATAGA+AGG + chr1_1:37318096-37318115 None:intergenic 45.0%
!! AGTAAGAAGCATTGGGCAGT+GGG - chr1_1:37318243-37318262 Msa0021130:CDS 45.0%
CTCAATGGTAAGAGGGTTGA+AGG + chr1_1:37318271-37318290 None:intergenic 45.0%
AAAGGGTAGGCATTCATGCA+TGG - chr1_1:37318305-37318324 Msa0021130:CDS 45.0%
GTAGGCATTCATGCATGGAA+TGG - chr1_1:37318310-37318329 Msa0021130:CDS 45.0%
TGAACAGATTGCAACTGGGT+TGG - chr1_1:37318407-37318426 Msa0021130:CDS 45.0%
TGAAGAGAGAGTCGAAGGAA+TGG - chr1_1:37318530-37318549 Msa0021130:CDS 45.0%
GAAGAGAGAGTCGAAGGAAT+GGG - chr1_1:37318531-37318550 Msa0021130:CDS 45.0%
AAGAGAGAGTCGAAGGAATG+GGG - chr1_1:37318532-37318551 Msa0021130:CDS 45.0%
!! TGGGGTTTGTTGTGAGAGAT+TGG - chr1_1:37318550-37318569 Msa0021130:CDS 45.0%
!! GGGGTTTGTTGTGAGAGATT+GGG - chr1_1:37318551-37318570 Msa0021130:CDS 45.0%
GGTGGCTTAGAATTTCCAAC+TGG + chr1_1:37318581-37318600 None:intergenic 45.0%
ATTCTAAGCCACCCTTCAAC+AGG - chr1_1:37318588-37318607 Msa0021130:CDS 45.0%
CTCATAAACCCTCCTGTTGA+AGG + chr1_1:37318603-37318622 None:intergenic 45.0%
GGAGGGTTTATGAGTCATTG+TGG - chr1_1:37318609-37318628 Msa0021130:CDS 45.0%
GCTATGTCTATGGATGAAGG+CGG - chr1_1:37318879-37318898 Msa0021130:CDS 45.0%
CGGAGTTTCTCGTATGGAAA+TGG - chr1_1:37318899-37318918 Msa0021130:CDS 45.0%
!! AAATGGCCTTGTGCTGGGAA+AGG + chr1_1:37317610-37317629 None:intergenic 50.0%
!! GAAGTGCCAACATAGTGGAC+AGG + chr1_1:37317679-37317698 None:intergenic 50.0%
TGTGGCTTGACGGTTGTGTA+TGG + chr1_1:37317701-37317720 None:intergenic 50.0%
GGACACGAATTGTGGCTTGA+CGG + chr1_1:37317711-37317730 None:intergenic 50.0%
CAAGCCACAATTCGTGTCCA+AGG - chr1_1:37317712-37317731 Msa0021130:CDS 50.0%
CCAACCTTGGACACGAATTG+TGG + chr1_1:37317719-37317738 None:intergenic 50.0%
CCACAATTCGTGTCCAAGGT+TGG - chr1_1:37317716-37317735 Msa0021130:CDS 50.0%
TGGAGTTTGGATCCCAACCT+TGG + chr1_1:37317732-37317751 None:intergenic 50.0%
! TCTGCATTTGGGTTAGGAGG+AGG + chr1_1:37317802-37317821 None:intergenic 50.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_1:37317863-37317882 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_1:37317864-37317883 Msa0021130:CDS 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_1:37318242-37318261 Msa0021130:CDS 50.0%
GGGTTTGAAGAGAGAGTCGA+AGG - chr1_1:37318525-37318544 Msa0021130:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_1:37318592-37318611 Msa0021130:CDS 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_1:37318599-37318618 None:intergenic 50.0%
TGCATAGGCCATGCTGCTAT+TGG + chr1_1:37318672-37318691 None:intergenic 50.0%
! CTTGGCTGGTCAGAATGCAT+AGG + chr1_1:37318687-37318706 None:intergenic 50.0%
TGAAGGCGGAGTTTCTCGTA+TGG - chr1_1:37318893-37318912 Msa0021130:CDS 50.0%
!! AAATGGCCTTGTGCTGGGAA+AGG + chr1_1:37317610-37317629 None:intergenic 50.0%
!! GAAGTGCCAACATAGTGGAC+AGG + chr1_1:37317679-37317698 None:intergenic 50.0%
TGTGGCTTGACGGTTGTGTA+TGG + chr1_1:37317701-37317720 None:intergenic 50.0%
GGACACGAATTGTGGCTTGA+CGG + chr1_1:37317711-37317730 None:intergenic 50.0%
CAAGCCACAATTCGTGTCCA+AGG - chr1_1:37317712-37317731 Msa0021130:CDS 50.0%
CCAACCTTGGACACGAATTG+TGG + chr1_1:37317719-37317738 None:intergenic 50.0%
CCACAATTCGTGTCCAAGGT+TGG - chr1_1:37317716-37317735 Msa0021130:CDS 50.0%
TGGAGTTTGGATCCCAACCT+TGG + chr1_1:37317732-37317751 None:intergenic 50.0%
! TCTGCATTTGGGTTAGGAGG+AGG + chr1_1:37317802-37317821 None:intergenic 50.0%
TGGCTCACGAAGATGTGAAG+AGG + chr1_1:37317863-37317882 None:intergenic 50.0%
TTCACATCTTCGTGAGCCAG+TGG - chr1_1:37317864-37317883 Msa0021130:CDS 50.0%
!! CAGTAAGAAGCATTGGGCAG+TGG - chr1_1:37318242-37318261 Msa0021130:CDS 50.0%
GGGTTTGAAGAGAGAGTCGA+AGG - chr1_1:37318525-37318544 Msa0021130:CDS 50.0%
TAAGCCACCCTTCAACAGGA+GGG - chr1_1:37318592-37318611 Msa0021130:CDS 50.0%
TAAACCCTCCTGTTGAAGGG+TGG + chr1_1:37318599-37318618 None:intergenic 50.0%
TGCATAGGCCATGCTGCTAT+TGG + chr1_1:37318672-37318691 None:intergenic 50.0%
! CTTGGCTGGTCAGAATGCAT+AGG + chr1_1:37318687-37318706 None:intergenic 50.0%
TGAAGGCGGAGTTTCTCGTA+TGG - chr1_1:37318893-37318912 Msa0021130:CDS 50.0%
GTGGTACCTTTCCCAGCACA+AGG - chr1_1:37317601-37317620 Msa0021130:CDS 55.0%
GGAGGAGGTGAAACAAAGGG+AGG + chr1_1:37317787-37317806 None:intergenic 55.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_1:37318591-37318610 Msa0021130:CDS 55.0%
GTGGTACCTTTCCCAGCACA+AGG - chr1_1:37317601-37317620 Msa0021130:CDS 55.0%
GGAGGAGGTGAAACAAAGGG+AGG + chr1_1:37317787-37317806 None:intergenic 55.0%
CTAAGCCACCCTTCAACAGG+AGG - chr1_1:37318591-37318610 Msa0021130:CDS 55.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_1:37318563-37318582 Msa0021130:CDS 60.0%
!! TGGGGGTGCCAATAGCAGCA+TGG - chr1_1:37318661-37318680 Msa0021130:CDS 60.0%
GAGAGATTGGGCACCCCAGT+TGG - chr1_1:37318563-37318582 Msa0021130:CDS 60.0%
!! TGGGGGTGCCAATAGCAGCA+TGG - chr1_1:37318661-37318680 Msa0021130:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 37317553 37318950 37317553 ID=Msa0021130;Name=Msa0021130
chr1_1 mRNA 37317553 37318950 37317553 ID=Msa0021130-mRNA-1;Parent=Msa0021130;Name=Msa0021130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|465
chr1_1 exon 37317553 37318950 37317553 ID=Msa0021130-mRNA-1:exon:11672;Parent=Msa0021130-mRNA-1
chr1_1 CDS 37317553 37318950 37317553 ID=Msa0021130-mRNA-1:cds;Parent=Msa0021130-mRNA-1
Gene Sequence

>Msa0021130

ATGGCTTCCAATGGCCAAAACAAATCAAAAAACCAAGTGGTGGTTATTGTGGTACCTTTCCCAGCACAAGGCCATTTGAATCAACTTCTACACTTCTCACGCTTAATCTTATCACACAACATACCTGTCCACTATGTTGGCACTTCCATACACAACCGTCAAGCCACAATTCGTGTCCAAGGTTGGGATCCAAACTCCATTTCAAACATCCATTTTCATCACTTCAAAGTTCCTCCCTTTGTTTCACCTCCTCCTAACCCAAATGCAGAAAACAAATTTCCTTCTCATATGGTTCCTTCTTTTCTAGCCTCTTCACATCTTCGTGAGCCAGTGGTAGAACTCATGCAATCACTTTCATCTGTTTTCAAAAGGGTTGTTGTGATTCATGATAGTCTAATGGCATCAGTGGTACAAGATGCTAAAAACATAGAAAATGTTGAGAATTACTCATTTCTCAGTACATGTGCTTTTACAATTTTCACTTCCATTTGGGAGAAAGTGGGAAAACCTCCGATTGAAAGCTCGCATATTATTGATGTTCCTTCTATGGAGGATGGATGCTTCACAGCTGAAATCAGTGACTTCTTTAATGCACAAAAAGAATTCTATGCATTAAGTGATGGGAGCATCTACAATACAAGCAGAGTCATTGAAAGTCCTTACTTGGAGTTGATAGAGAAAATCACTTGCAGTAAGAAGCATTGGGCAGTGGGACCCTTCAACCCTCTTACCATTGAGAAGAAGAAAGATTCAAAGGGTAGGCATTCATGCATGGAATGGCTTGATAAACAAGAACCAAATTCAGTTATATATGTATCTTTTGGAACAACAACAACCTTGACAGATGAAGAAATTGAACAGATTGCAACTGGGTTGGAACAAAGCAAGATAAAGTTCATTTGGGTGTTGAGAGATGCTGATAAAGGAGACATATTTGATGGAAATGAAGGGAAAAGAGGTGAACTTGCAAAAGGGTTTGAAGAGAGAGTCGAAGGAATGGGGTTTGTTGTGAGAGATTGGGCACCCCAGTTGGAAATTCTAAGCCACCCTTCAACAGGAGGGTTTATGAGTCATTGTGGATGGAACTCTACTTTAGAGAGCATTTCAATGGGGGTGCCAATAGCAGCATGGCCTATGCATTCTGACCAGCCAAGAAACTGTGTTTTCATAACACAAGTGTTAAAGATTGGTTTGGTTGTGATGGATTGGGCTAAAAGACATGAGTTGGTTACTGCTTCAGATATTGAGAATGTTGTTAGAAGGTTGATGGATACAAAGGAAGGTGATGAGATGCGCGAGAGAGCAATGAAACTTAAAAATGCTATTGCTATGTCTATGGATGAAGGCGGAGTTTCTCGTATGGAAATGGATTCTTTCATCGCTCATGTCACTCGATAA

Protein sequence

>Msa0021130

MASNGQNKSKNQVVVIVVPFPAQGHLNQLLHFSRLILSHNIPVHYVGTSIHNRQATIRVQGWDPNSISNIHFHHFKVPPFVSPPPNPNAENKFPSHMVPSFLASSHLREPVVELMQSLSSVFKRVVVIHDSLMASVVQDAKNIENVENYSFLSTCAFTIFTSIWEKVGKPPIESSHIIDVPSMEDGCFTAEISDFFNAQKEFYALSDGSIYNTSRVIESPYLELIEKITCSKKHWAVGPFNPLTIEKKKDSKGRHSCMEWLDKQEPNSVIYVSFGTTTTLTDEEIEQIATGLEQSKIKFIWVLRDADKGDIFDGNEGKRGELAKGFEERVEGMGFVVRDWAPQLEILSHPSTGGFMSHCGWNSTLESISMGVPIAAWPMHSDQPRNCVFITQVLKIGLVVMDWAKRHELVTASDIENVVRRLMDTKEGDEMRERAMKLKNAIAMSMDEGGVSRMEMDSFIAHVTR*