AlfalfaGEDB | Msa0021130

M. sativa cultivar zhongmu-4 / Msa0021130

KEGG: K13494|K13495
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026
PFAM: PF00201.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021130	sp\|Q9ZSK5\|ZOG_PHALU	68.202	456	138	3	10	465	11	459	0.0	628

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021130	Msa0030000	0.800449	1.433796e-48	-8.615850e-47
Msa0021130	Msa0032120	0.810865	9.318359e-51	-8.615850e-47
Msa0021130	Msa0032400	0.809229	2.097764e-50	-8.615850e-47
Msa0021130	Msa0068830	0.828164	1.046471e-54	-8.615850e-47
Msa0021130	Msa0094700	0.802088	6.623173e-49	-8.615850e-47
Msa0021130	Msa0113870	0.974415	4.082748e-138	-8.615850e-47
Msa0021130	Msa0158020	0.805715	1.167602e-49	-8.615850e-47
Msa0021130	Msa0160000	0.909008	9.147460e-82	-8.615850e-47
Msa0021130	Msa0185700	0.813296	2.750095e-51	-8.615850e-47
Msa0021130	Msa0204030	0.812876	3.399871e-51	-8.615850e-47

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021130	MtrunA17_Chr1g0173121	94.194	465	26	1	1	465	1	464	0.0	889
Msa0021130	MtrunA17_Chr1g0159551	86.695	466	56	3	1	465	1	461	0.0	822
Msa0021130	MtrunA17_Chr8g0382021	67.965	462	141	5	10	465	30	490	0.0	635
Msa0021130	MtrunA17_Chr7g0232411	30.901	466	271	13	15	449	7	452	8.24e-57	195
Msa0021130	MtrunA17_Chr5g0440421	30.584	497	287	17	15	465	11	495	2.97e-56	194
Msa0021130	MtrunA17_Chr4g0044511	30.864	486	271	16	15	460	41	501	2.23e-54	189
Msa0021130	MtrunA17_Chr7g0232391	30.043	466	280	13	15	452	7	454	2.96e-54	188
Msa0021130	MtrunA17_Chr6g0464871	29.209	493	278	18	6	465	14	468	3.21e-54	188
Msa0021130	MtrunA17_Chr6g0449931	30.462	476	275	14	15	456	7	460	3.36e-54	188
Msa0021130	MtrunA17_Chr7g0275511	31.120	482	267	16	9	452	10	464	3.96e-54	188

Showing 1 to 10 of 277 entries

Previous1 2 3 4 5…28Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021130	AT2G15490.3	28.454	485	308	12	9	463	2	477	2.63e-55	191
Msa0021130	AT2G15490.1	28.484	488	307	12	9	463	2	480	5.40e-55	191
Msa0021130	AT4G34131.1	29.363	487	290	13	15	464	11	480	6.88e-54	188
Msa0021130	AT2G36780.1	30.223	493	287	18	1	452	1	477	1.55e-53	187
Msa0021130	AT2G36770.1	29.303	488	298	15	1	452	1	477	1.01e-51	182
Msa0021130	AT2G15480.1	27.216	485	308	14	12	463	8	480	1.23e-51	182
Msa0021130	AT1G73880.1	28.056	499	292	17	1	464	1	467	2.98e-51	181
Msa0021130	AT2G31750.1	28.776	490	278	17	10	465	4	456	1.15e-49	176
Msa0021130	AT2G31750.2	28.776	490	278	17	10	465	4	456	1.96e-49	176
Msa0021130	AT2G15480.2	26.667	495	308	15	12	463	8	490	3.36e-49	176

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

Find 115 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGTGAACTTGCAAA+AGG	0.500030	1_1:-37317977	Msa0021130:CDS
AAACAAATTTCCTTCTCATA+TGG	0.344813	1_1:-37318659	Msa0021130:CDS
AAACCAAGTGGTGGTTATTG+TGG	0.512648	1_1:-37318899	Msa0021130:CDS
AAAGAAGGAACCATATGAGA+AGG	0.581429	1_1:+37318649	None:intergenic
AAAGAGGTGAACTTGCAAAA+GGG	0.594152	1_1:-37317976	Msa0021130:CDS
AAAGATTGGTTTGGTTGTGA+TGG	0.513574	1_1:-37317747	Msa0021130:CDS
AAAGCAAGATAAAGTTCATT+TGG	0.300854	1_1:-37318048	Msa0021130:CDS
AAAGGGTAGGCATTCATGCA+TGG	0.596424	1_1:-37318176	Msa0021130:CDS
AAATGCTATTGCTATGTCTA+TGG	0.315928	1_1:-37317612	Msa0021130:CDS
AAATGGCCTTGTGCTGGGAA+AGG	0.563121	1_1:+37318874	None:intergenic

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTGATTCATGATAGTCTAA+TGG	-	chr1_1:37317930-37317949	Msa0021130:CDS	30.0%
ATAATATGCGAGCTTTCAAT+CGG	+	chr1_1:37318066-37318085	None:intergenic	30.0%
GAATTCTATGCATTAAGTGA+TGG	-	chr1_1:37318153-37318172	Msa0021130:CDS	30.0%
TGAATCTTTCTTCTTCTCAA+TGG	+	chr1_1:37318286-37318305	None:intergenic	30.0%
TGAGAAGAAGAAAGATTCAA+AGG	-	chr1_1:37318287-37318306	Msa0021130:CDS	30.0%
GAGAAGAAGAAAGATTCAAA+GGG	-	chr1_1:37318288-37318307	Msa0021130:CDS	30.0%
TTCAATTTCTTCATCTGTCA+AGG	+	chr1_1:37318391-37318410	None:intergenic	30.0%
AAATTGAACAGATTGCAACT+GGG	-	chr1_1:37318403-37318422	Msa0021130:CDS	30.0%
GATAAAGGAGACATATTTGA+TGG	-	chr1_1:37318471-37318490	Msa0021130:CDS	30.0%
GACATATTTGATGGAAATGA+AGG	-	chr1_1:37318480-37318499	Msa0021130:CDS	30.0%

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	37317553	37318950	37317553	ID=Msa0021130;Name=Msa0021130
chr1_1	mRNA	37317553	37318950	37317553	ID=Msa0021130-mRNA-1;Parent=Msa0021130;Name=Msa0021130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|465
chr1_1	exon	37317553	37318950	37317553	ID=Msa0021130-mRNA-1:exon:11672;Parent=Msa0021130-mRNA-1
chr1_1	CDS	37317553	37318950	37317553	ID=Msa0021130-mRNA-1:cds;Parent=Msa0021130-mRNA-1

Gene Sequence

>Msa0021130

ATGGCTTCCAATGGCCAAAACAAATCAAAAAACCAAGTGGTGGTTATTGTGGTACCTTTCCCAGCACAAGGCCATTTGAATCAACTTCTACACTTCTCACGCTTAATCTTATCACACAACATACCTGTCCACTATGTTGGCACTTCCATACACAACCGTCAAGCCACAATTCGTGTCCAAGGTTGGGATCCAAACTCCATTTCAAACATCCATTTTCATCACTTCAAAGTTCCTCCCTTTGTTTCACCTCCTCCTAACCCAAATGCAGAAAACAAATTTCCTTCTCATATGGTTCCTTCTTTTCTAGCCTCTTCACATCTTCGTGAGCCAGTGGTAGAACTCATGCAATCACTTTCATCTGTTTTCAAAAGGGTTGTTGTGATTCATGATAGTCTAATGGCATCAGTGGTACAAGATGCTAAAAACATAGAAAATGTTGAGAATTACTCATTTCTCAGTACATGTGCTTTTACAATTTTCACTTCCATTTGGGAGAAAGTGGGAAAACCTCCGATTGAAAGCTCGCATATTATTGATGTTCCTTCTATGGAGGATGGATGCTTCACAGCTGAAATCAGTGACTTCTTTAATGCACAAAAAGAATTCTATGCATTAAGTGATGGGAGCATCTACAATACAAGCAGAGTCATTGAAAGTCCTTACTTGGAGTTGATAGAGAAAATCACTTGCAGTAAGAAGCATTGGGCAGTGGGACCCTTCAACCCTCTTACCATTGAGAAGAAGAAAGATTCAAAGGGTAGGCATTCATGCATGGAATGGCTTGATAAACAAGAACCAAATTCAGTTATATATGTATCTTTTGGAACAACAACAACCTTGACAGATGAAGAAATTGAACAGATTGCAACTGGGTTGGAACAAAGCAAGATAAAGTTCATTTGGGTGTTGAGAGATGCTGATAAAGGAGACATATTTGATGGAAATGAAGGGAAAAGAGGTGAACTTGCAAAAGGGTTTGAAGAGAGAGTCGAAGGAATGGGGTTTGTTGTGAGAGATTGGGCACCCCAGTTGGAAATTCTAAGCCACCCTTCAACAGGAGGGTTTATGAGTCATTGTGGATGGAACTCTACTTTAGAGAGCATTTCAATGGGGGTGCCAATAGCAGCATGGCCTATGCATTCTGACCAGCCAAGAAACTGTGTTTTCATAACACAAGTGTTAAAGATTGGTTTGGTTGTGATGGATTGGGCTAAAAGACATGAGTTGGTTACTGCTTCAGATATTGAGAATGTTGTTAGAAGGTTGATGGATACAAAGGAAGGTGATGAGATGCGCGAGAGAGCAATGAAACTTAAAAATGCTATTGCTATGTCTATGGATGAAGGCGGAGTTTCTCGTATGGAAATGGATTCTTTCATCGCTCATGTCACTCGATAA

Protein sequence

>Msa0021130

MASNGQNKSKNQVVVIVVPFPAQGHLNQLLHFSRLILSHNIPVHYVGTSIHNRQATIRVQGWDPNSISNIHFHHFKVPPFVSPPPNPNAENKFPSHMVPSFLASSHLREPVVELMQSLSSVFKRVVVIHDSLMASVVQDAKNIENVENYSFLSTCAFTIFTSIWEKVGKPPIESSHIIDVPSMEDGCFTAEISDFFNAQKEFYALSDGSIYNTSRVIESPYLELIEKITCSKKHWAVGPFNPLTIEKKKDSKGRHSCMEWLDKQEPNSVIYVSFGTTTTLTDEEIEQIATGLEQSKIKFIWVLRDADKGDIFDGNEGKRGELAKGFEERVEGMGFVVRDWAPQLEILSHPSTGGFMSHCGWNSTLESISMGVPIAAWPMHSDQPRNCVFITQVLKIGLVVMDWAKRHELVTASDIENVVRRLMDTKEGDEMRERAMKLKNAIAMSMDEGGVSRMEMDSFIAHVTR*