Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070640 | sp|O49472|INDH_ARATH | 66.321 | 193 | 65 | 0 | 2 | 194 | 105 | 297 | 6.11e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070640 | A0A072VLT3 | 98.985 | 197 | 2 | 0 | 1 | 197 | 83 | 279 | 7.34e-142 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070620 | Msa0070640 | 0.942960 | 2.836397e-102 | -8.615850e-47 |
| Msa0070640 | Msa0123640 | 0.886583 | 3.013497e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070640 | MtrunA17_Chr1g0184451 | 98.985 | 197 | 2 | 0 | 1 | 197 | 83 | 279 | 1.41e-145 | 405 |
| Msa0070640 | MtrunA17_Chr6g0485031 | 37.306 | 193 | 107 | 4 | 3 | 185 | 241 | 429 | 3.03e-36 | 132 |
| Msa0070640 | MtrunA17_Chr1g0153571 | 31.481 | 216 | 102 | 6 | 14 | 188 | 133 | 343 | 1.46e-20 | 87.8 |
| Msa0070640 | MtrunA17_Chr1g0151421 | 31.481 | 216 | 102 | 6 | 14 | 188 | 134 | 344 | 6.27e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070640 | AT4G19540.1 | 66.321 | 193 | 65 | 0 | 2 | 194 | 105 | 297 | 6.21e-98 | 286 |
| Msa0070640 | AT3G24430.1 | 38.251 | 183 | 109 | 2 | 3 | 185 | 240 | 418 | 2.80e-38 | 138 |
| Msa0070640 | AT5G50960.1 | 31.507 | 219 | 105 | 5 | 7 | 183 | 128 | 343 | 4.41e-27 | 105 |
Find 61 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGATGTTGCATTAA+TGG | 0.159802 | 1_2:+41252411 | Msa0070640:CDS |
| GGCGAACCTTCATATATATT+TGG | 0.186512 | 1_2:+41253647 | Msa0070640:CDS |
| GATTCTGAGACATAGATATT+TGG | 0.283473 | 1_2:-41251713 | None:intergenic |
| AAATGACGAGGGGAGTTAAC+TGG | 0.330730 | 1_2:+41251640 | Msa0070640:CDS |
| GTTCAATAAAGTTGATATTC+CGG | 0.350862 | 1_2:+41252456 | Msa0070640:CDS |
| GGGATCAAGTGTATGTCAAT+AGG | 0.367929 | 1_2:+41251339 | Msa0070640:CDS |
| TCTCAGAATCTGCAACTATC+AGG | 0.373762 | 1_2:+41251726 | Msa0070640:CDS |
| TCTGTAGTTTCTAGAGCATA+TGG | 0.381576 | 1_2:+41254450 | Msa0070640:CDS |
| TGGGGCCTCTCCAGACGATC+GGG | 0.385203 | 1_2:-41251383 | None:intergenic |
| TGATTCCCATTGATAGTTAC+GGG | 0.385809 | 1_2:+41251319 | Msa0070640:CDS |
| AGAAGAATGCCCCGATCGTC+TGG | 0.396775 | 1_2:+41251373 | Msa0070640:CDS |
| TACCACTGGAAGTGGAGATC+AGG | 0.399284 | 1_2:+41254382 | Msa0070640:CDS |
| GCTCTAGAAACTACAGAATC+AGG | 0.405926 | 1_2:-41254444 | None:intergenic |
| TCATAGCACAGCCACTGAAA+TGG | 0.425764 | 1_2:+41253682 | Msa0070640:CDS |
| ATGATTCCCATTGATAGTTA+CGG | 0.432104 | 1_2:+41251318 | Msa0070640:CDS |
| CTTGATCCCGTAACTATCAA+TGG | 0.438569 | 1_2:-41251325 | None:intergenic |
| CATAGCACAGCCACTGAAAT+GGG | 0.443169 | 1_2:+41253683 | Msa0070640:CDS |
| ATCAGGGAAGCTTGTGATCA+AGG | 0.450807 | 1_2:+41254399 | Msa0070640:CDS |
| GGATCAAGTGTATGTCAATA+GGG | 0.458082 | 1_2:+41251340 | Msa0070640:CDS |
| ATATGGAAATATAGCTGAAA+AGG | 0.465410 | 1_2:+41254467 | Msa0070640:CDS |
| ACATTTCATAGTAAAATCTC+TGG | 0.468648 | 1_2:-41254522 | None:intergenic |
| TCAGGTGCGGCCAACACTAT+CGG | 0.472607 | 1_2:-41254426 | None:intergenic |
| CCTTTACCAAATATATATGA+AGG | 0.479977 | 1_2:-41253653 | None:intergenic |
| CAGGTGCGGCCAACACTATC+GGG | 0.485473 | 1_2:-41254425 | None:intergenic |
| TGCATTAATGGATGCGAGAA+GGG | 0.486805 | 1_2:+41252423 | Msa0070640:CDS |
| AATGACGAGGGGAGTTAACT+GGG | 0.488841 | 1_2:+41251641 | Msa0070640:CDS |
| ATAGATATGCCTCCTGGCAC+TGG | 0.493130 | 1_2:+41251684 | Msa0070640:CDS |
| ATGGGGCCTCTCCAGACGAT+CGG | 0.500251 | 1_2:-41251384 | None:intergenic |
| ATTCAAGATACCACTGGAAG+TGG | 0.501090 | 1_2:+41254374 | Msa0070640:intron |
| CCTTCATATATATTTGGTAA+AGG | 0.504163 | 1_2:+41253653 | Msa0070640:CDS |
| CATATATATTTGGTAAAGGA+GGG | 0.512882 | 1_2:+41253657 | Msa0070640:CDS |
| TTGATCCCGTAACTATCAAT+GGG | 0.516228 | 1_2:-41251324 | None:intergenic |
| TCCATTAATGCAACATCTTG+AGG | 0.518038 | 1_2:-41252412 | None:intergenic |
| TCATATATATTTGGTAAAGG+AGG | 0.524591 | 1_2:+41253656 | Msa0070640:CDS |
| CTGGTGATAGATATGCCTCC+TGG | 0.527506 | 1_2:+41251678 | Msa0070640:CDS |
| AAAATTTAATCCCATTTCAG+TGG | 0.548951 | 1_2:-41253693 | None:intergenic |
| TCAGGGAAGCTTGTGATCAA+GGG | 0.553420 | 1_2:+41254400 | Msa0070640:CDS |
| GATCGTCTGGAGAGGCCCCA+TGG | 0.554959 | 1_2:+41251386 | Msa0070640:CDS |
| ATTTGGACATCACCAGTGCC+AGG | 0.555591 | 1_2:-41251696 | None:intergenic |
| ACCACTGGAAGTGGAGATCA+GGG | 0.566063 | 1_2:+41254383 | Msa0070640:CDS |
| TGCTTTAAATGTCCACATTG+TGG | 0.569694 | 1_2:+41253626 | Msa0070640:CDS |
| TTATCGATTCAAGATACCAC+TGG | 0.571247 | 1_2:+41254368 | Msa0070640:intron |
| TTGCATTAATGGATGCGAGA+AGG | 0.572149 | 1_2:+41252422 | Msa0070640:CDS |
| ATATATATTTGGTAAAGGAG+GGG | 0.592261 | 1_2:+41253658 | Msa0070640:CDS |
| GCATTAATGGATGCGAGAAG+GGG | 0.600484 | 1_2:+41252424 | Msa0070640:CDS |
| TCCCTGATCTCCACTTCCAG+TGG | 0.604175 | 1_2:-41254384 | None:intergenic |
| AAAGGTTGTTCAGAAACTCA+AGG | 0.620310 | 1_2:+41254485 | Msa0070640:CDS |
| GGGGCCTCTCCAGACGATCG+GGG | 0.629673 | 1_2:-41251382 | None:intergenic |
| TCAAGGGCACCCGATAGTGT+TGG | 0.640121 | 1_2:+41254416 | Msa0070640:CDS |
| AATGCCCCGATCGTCTGGAG+AGG | 0.641120 | 1_2:+41251378 | Msa0070640:CDS |
| AGCTCTTGAGAAAATGACGA+GGG | 0.641120 | 1_2:+41251629 | Msa0070640:CDS |
| TATCTATCACCAGAATGTCA+AGG | 0.659018 | 1_2:-41251668 | None:intergenic |
| TATGAAGGTTCGCCACAATG+TGG | 0.675582 | 1_2:-41253638 | None:intergenic |
| ATGACGAGGGGAGTTAACTG+GGG | 0.676508 | 1_2:+41251642 | Msa0070640:CDS |
| TCGGGGCATTCTTCTCCACA+AGG | 0.698186 | 1_2:-41251365 | None:intergenic |
| AGAAACTACAGAATCAGGTG+CGG | 0.700617 | 1_2:-41254439 | None:intergenic |
| AAGCTCTTGAGAAAATGACG+AGG | 0.702011 | 1_2:+41251628 | Msa0070640:CDS |
| GCTCTTGAGAAAATGACGAG+GGG | 0.708702 | 1_2:+41251630 | Msa0070640:CDS |
| TATGTCAATAGGGTTCCTTG+TGG | 0.727496 | 1_2:+41251350 | Msa0070640:CDS |
| TGACGAGGGGAGTTAACTGG+GGG | 0.736165 | 1_2:+41251643 | Msa0070640:CDS |
| TGGACATCACCAGTGCCAGG+AGG | 0.736378 | 1_2:-41251693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGTTAATGAAAATGAAA+AGG | - | chr1_2:41251453-41251472 | None:intergenic | 15.0% |
| !!! | TTTATTTGAATTTTTATTGC+TGG | + | chr1_2:41251588-41251607 | Msa0070640:intron | 15.0% |
| !! | TACTCTAATTGAATAATAAT+CGG | - | chr1_2:41252639-41252658 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTACTTATTTCA+CGG | + | chr1_2:41253416-41253435 | Msa0070640:intron | 15.0% |
| !!! | TGTCTTTCTTAATTAATTTT+GGG | - | chr1_2:41253962-41253981 | None:intergenic | 15.0% |
| !!! | ATGTCTTTCTTAATTAATTT+TGG | - | chr1_2:41253963-41253982 | None:intergenic | 15.0% |
| !! | AAATTAATTAAGAAAGACAT+AGG | + | chr1_2:41253963-41253982 | Msa0070640:intron | 15.0% |
| !! | TATATTTCATTTAGAAGAAA+AGG | - | chr1_2:41254058-41254077 | None:intergenic | 15.0% |
| !! | TTAAAATCTAGACAAAGTAA+AGG | - | chr1_2:41251854-41251873 | None:intergenic | 20.0% |
| !! | ACAAAAATAACCAATGAAAA+AGG | - | chr1_2:41252352-41252371 | None:intergenic | 20.0% |
| !! | ATTTACAAAAACTCATAATC+AGG | - | chr1_2:41252513-41252532 | None:intergenic | 20.0% |
| !!! | GATTATGAGTTTTTGTAAAT+TGG | + | chr1_2:41252513-41252532 | Msa0070640:intron | 20.0% |
| !! | TTATTTCAGTTTATTGTTGT+CGG | + | chr1_2:41252902-41252921 | Msa0070640:intron | 20.0% |
| !! | AATAAATATGTAAATACACC+TGG | + | chr1_2:41253333-41253352 | Msa0070640:intron | 20.0% |
| !!! | TGCTTCTATTATATGTTTTA+AGG | + | chr1_2:41253392-41253411 | Msa0070640:intron | 20.0% |
| !!! | TGAAATGGGATTAAATTTTT+TGG | + | chr1_2:41253697-41253716 | Msa0070640:CDS | 20.0% |
| !!! | GAAATGGGATTAAATTTTTT+GGG | + | chr1_2:41253698-41253717 | Msa0070640:CDS | 20.0% |
| !! | AATGAAAAGTTTAGCAATAT+CGG | + | chr1_2:41253840-41253859 | Msa0070640:intron | 20.0% |
| !! | AAAAAAAACTAAATAATGCC+AGG | + | chr1_2:41253894-41253913 | Msa0070640:intron | 20.0% |
| !! | AAAAAAACTAAATAATGCCA+GGG | + | chr1_2:41253895-41253914 | Msa0070640:intron | 20.0% |
| !! | TAAAACGAGAAAATGATTAT+CGG | - | chr1_2:41254089-41254108 | None:intergenic | 20.0% |
| !!! | TAATCATTTTCTCGTTTTAT+TGG | + | chr1_2:41254090-41254109 | Msa0070640:intron | 20.0% |
| ! | CAAATAAAAAACAGTAGAAG+TGG | - | chr1_2:41251576-41251595 | None:intergenic | 25.0% |
| !! | TTTTATTGCTGGATTATCAT+AGG | + | chr1_2:41251599-41251618 | Msa0070640:intron | 25.0% |
| ! | TGGGATTTATTGAATATATC+AGG | - | chr1_2:41251904-41251923 | None:intergenic | 25.0% |
| ! | TTCAATAAATCCCATAAAGA+AGG | + | chr1_2:41251910-41251929 | Msa0070640:intron | 25.0% |
| !!! | TTGAAAGTGTTGTCAAATAT+CGG | + | chr1_2:41251975-41251994 | Msa0070640:intron | 25.0% |
| ! | TCAAAGGACAATTAGTAATT+TGG | - | chr1_2:41252295-41252314 | None:intergenic | 25.0% |
| ! | AATGAAAAAGGTTAAGTGAA+TGG | - | chr1_2:41252340-41252359 | None:intergenic | 25.0% |
| !!! | ATTCACTTAACCTTTTTCAT+TGG | + | chr1_2:41252339-41252358 | Msa0070640:intron | 25.0% |
| !!! | TTCATTGGTTATTTTTGTCA+TGG | + | chr1_2:41252354-41252373 | Msa0070640:intron | 25.0% |
| !!! | GTTCAATAAAGTTGATATTC+CGG | + | chr1_2:41252456-41252475 | Msa0070640:CDS | 25.0% |
| !! | ACAATATAAACATTTTGCCT+TGG | - | chr1_2:41252700-41252719 | None:intergenic | 25.0% |
| !! | CATTAGGATTTTTAAATGCA+TGG | - | chr1_2:41252880-41252899 | None:intergenic | 25.0% |
| ! | CATGCATTTAAAAATCCTAA+TGG | + | chr1_2:41252878-41252897 | Msa0070640:intron | 25.0% |
| ! | ATAAACTGAAATAAGCCATT+AGG | - | chr1_2:41252896-41252915 | None:intergenic | 25.0% |
| !! | ATTAGGATTTCTAGATTTAG+AGG | - | chr1_2:41253098-41253117 | None:intergenic | 25.0% |
| ! | TCTAAATCTAGAAATCCTAA+TGG | + | chr1_2:41253097-41253116 | Msa0070640:intron | 25.0% |
| ! | ATAAACTGAAATAAGCCATT+AGG | - | chr1_2:41252896-41252915 | None:intergenic | 25.0% |
| ! | AATAAATATGTAAACACACC+CGG | + | chr1_2:41253160-41253179 | Msa0070640:intron | 25.0% |
| ! | TGTTGCTAAAATTAGAGTTT+AGG | + | chr1_2:41253238-41253257 | Msa0070640:intron | 25.0% |
| ! | CATTAAGATTTCTAAATGCA+TGG | - | chr1_2:41253272-41253291 | None:intergenic | 25.0% |
| ! | CATGCATTTAGAAATCTTAA+TGG | + | chr1_2:41253270-41253289 | Msa0070640:intron | 25.0% |
| ! | TATATCAGCCATTTCTTATT+TGG | + | chr1_2:41253494-41253513 | Msa0070640:intron | 25.0% |
| ! | CCTTTACCAAATATATATGA+AGG | - | chr1_2:41253656-41253675 | None:intergenic | 25.0% |
| ! | CCTTCATATATATTTGGTAA+AGG | + | chr1_2:41253653-41253672 | Msa0070640:CDS | 25.0% |
| ! | TCATATATATTTGGTAAAGG+AGG | + | chr1_2:41253656-41253675 | Msa0070640:CDS | 25.0% |
| ! | CATATATATTTGGTAAAGGA+GGG | + | chr1_2:41253657-41253676 | Msa0070640:CDS | 25.0% |
| ! | ATATATATTTGGTAAAGGAG+GGG | + | chr1_2:41253658-41253677 | Msa0070640:CDS | 25.0% |
| ! | AAAATTTAATCCCATTTCAG+TGG | - | chr1_2:41253696-41253715 | None:intergenic | 25.0% |
| ! | AAAAAACTAAATAATGCCAG+GGG | + | chr1_2:41253896-41253915 | Msa0070640:intron | 25.0% |
| !!! | ACCGTTCAGTTTTTTTTTTT+TGG | + | chr1_2:41254194-41254213 | Msa0070640:intron | 25.0% |
| ! | CCCAAAAAAAAAAAACTGAA+CGG | - | chr1_2:41254198-41254217 | None:intergenic | 25.0% |
| !!! | CCGTTCAGTTTTTTTTTTTT+GGG | + | chr1_2:41254195-41254214 | Msa0070640:intron | 25.0% |
| !!! | GTGCTGTTTTCAATAATTTA+AGG | - | chr1_2:41254279-41254298 | None:intergenic | 25.0% |
| ! | ATATGGAAATATAGCTGAAA+AGG | + | chr1_2:41254467-41254486 | Msa0070640:CDS | 25.0% |
| ! | ATGATTCCCATTGATAGTTA+CGG | + | chr1_2:41251318-41251337 | Msa0070640:CDS | 30.0% |
| !! | GATTCTGAGACATAGATATT+TGG | - | chr1_2:41251716-41251735 | None:intergenic | 30.0% |
| TATCAGGTAACTAACCATTT+AGG | + | chr1_2:41251742-41251761 | Msa0070640:intron | 30.0% | |
| GTAACTAACCATTTAGGAAT+CGG | + | chr1_2:41251748-41251767 | Msa0070640:intron | 30.0% | |
| TAACTAACCATTTAGGAATC+GGG | + | chr1_2:41251749-41251768 | Msa0070640:intron | 30.0% | |
| !! | AGATTTTTCAATAACCACCA+TGG | + | chr1_2:41252028-41252047 | Msa0070640:intron | 30.0% |
| ! | AGCTTAAAATGATGAGCTTT+TGG | + | chr1_2:41252090-41252109 | Msa0070640:intron | 30.0% |
| GATAAGAAAGGTCATTTCAA+AGG | - | chr1_2:41252311-41252330 | None:intergenic | 30.0% | |
| GAATGGAAACTTGATAAGAA+AGG | - | chr1_2:41252323-41252342 | None:intergenic | 30.0% | |
| TTTGCCTTGGAAAAACAATT+GGG | - | chr1_2:41252687-41252706 | None:intergenic | 30.0% | |
| ! | TTTTGCCTTGGAAAAACAAT+TGG | - | chr1_2:41252688-41252707 | None:intergenic | 30.0% |
| CATTGTACCATTACTACATT+TGG | + | chr1_2:41252733-41252752 | Msa0070640:intron | 30.0% | |
| CATTAGGATTTCTAAATGCA+TGG | - | chr1_2:41252950-41252969 | None:intergenic | 30.0% | |
| CATGCATTTAGAAATCCTAA+TGG | + | chr1_2:41252948-41252967 | Msa0070640:intron | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr1_2:41253054-41253073 | None:intergenic | 30.0% | |
| GTTCTATCATAAACCATGTT+TGG | + | chr1_2:41253058-41253077 | Msa0070640:intron | 30.0% | |
| TCATTATCAGCAACCTATAT+TGG | - | chr1_2:41253453-41253472 | None:intergenic | 30.0% | |
| TGTGAACACCAAATAAGAAA+TGG | - | chr1_2:41253505-41253524 | None:intergenic | 30.0% | |
| TATGATTCCCAAAATCTGTA+AGG | - | chr1_2:41253594-41253613 | None:intergenic | 30.0% | |
| !! | GACTAAATTTTGAGAGATTG+AGG | + | chr1_2:41254011-41254030 | Msa0070640:intron | 30.0% |
| ! | TGATTCCCATTGATAGTTAC+GGG | + | chr1_2:41251319-41251338 | Msa0070640:CDS | 35.0% |
| TTGATCCCGTAACTATCAAT+GGG | - | chr1_2:41251327-41251346 | None:intergenic | 35.0% | |
| GGATCAAGTGTATGTCAATA+GGG | + | chr1_2:41251340-41251359 | Msa0070640:CDS | 35.0% | |
| AATTTCTGCTTTCCCTTGAT+TGG | + | chr1_2:41251424-41251443 | Msa0070640:intron | 35.0% | |
| ATGAAAAGGAGACCAATCAA+GGG | - | chr1_2:41251439-41251458 | None:intergenic | 35.0% | |
| AATGAAAAGGAGACCAATCA+AGG | - | chr1_2:41251440-41251459 | None:intergenic | 35.0% | |
| !! | CCAAGAACTAAAGTTCTAGA+AGG | - | chr1_2:41251498-41251517 | None:intergenic | 35.0% |
| !! | CCTTCTAGAACTTTAGTTCT+TGG | + | chr1_2:41251495-41251514 | Msa0070640:intron | 35.0% |
| TATCTATCACCAGAATGTCA+AGG | - | chr1_2:41251671-41251690 | None:intergenic | 35.0% | |
| !! | AGTTCTAGTTGGATGCTTTT+TGG | + | chr1_2:41251777-41251796 | Msa0070640:intron | 35.0% |
| !! | GTTCTAGTTGGATGCTTTTT+GGG | + | chr1_2:41251778-41251797 | Msa0070640:intron | 35.0% |
| !! | TTCTAGTTGGATGCTTTTTG+GGG | + | chr1_2:41251779-41251798 | Msa0070640:intron | 35.0% |
| ! | TCAGTGTTATTGATTGCAGA+TGG | - | chr1_2:41252132-41252151 | None:intergenic | 35.0% |
| !! | GAACTGAAGTGTCGTAATAT+TGG | + | chr1_2:41252253-41252272 | Msa0070640:intron | 35.0% |
| ! | TTTTGTCATGGCTTCTTCTA+TGG | + | chr1_2:41252366-41252385 | Msa0070640:intron | 35.0% |
| TCCTCAAGATGTTGCATTAA+TGG | + | chr1_2:41252411-41252430 | Msa0070640:CDS | 35.0% | |
| TCCATTAATGCAACATCTTG+AGG | - | chr1_2:41252415-41252434 | None:intergenic | 35.0% | |
| TGAATGAAACCAGTAGTGTT+TGG | - | chr1_2:41252593-41252612 | None:intergenic | 35.0% | |
| !! | TCATCCCAATTGTTTTTCCA+AGG | + | chr1_2:41252680-41252699 | Msa0070640:intron | 35.0% |
| TACCATTACTACATTTGGCA+TGG | + | chr1_2:41252738-41252757 | Msa0070640:intron | 35.0% | |
| ATCCATGCCAAATGTAGTAA+TGG | - | chr1_2:41252743-41252762 | None:intergenic | 35.0% | |
| GGATTTCAACCAACTTAATG+AGG | - | chr1_2:41252800-41252819 | None:intergenic | 35.0% | |
| ! | ATCAGGAGATTGCATTTTGT+CGG | + | chr1_2:41252832-41252851 | Msa0070640:intron | 35.0% |
| ! | TTTTGTCGGAATCAGAGTTT+AGG | + | chr1_2:41252846-41252865 | Msa0070640:intron | 35.0% |
| ! | TGTTGTTGTTGTATGCCATT+AGG | - | chr1_2:41252966-41252985 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1_2:41253086-41253105 | None:intergenic | 35.0% | |
| AATGGCTGATATATCAATGC+AGG | - | chr1_2:41253487-41253506 | None:intergenic | 35.0% | |
| GATTAACAGACATCAAAGCT+AGG | - | chr1_2:41253555-41253574 | None:intergenic | 35.0% | |
| ! | CAACTGTCCTTACAGATTTT+GGG | + | chr1_2:41253584-41253603 | Msa0070640:intron | 35.0% |
| ! | TGCTTTAAATGTCCACATTG+TGG | + | chr1_2:41253626-41253645 | Msa0070640:CDS | 35.0% |
| GGCGAACCTTCATATATATT+TGG | + | chr1_2:41253647-41253666 | Msa0070640:CDS | 35.0% | |
| TTGCTTGCTTCAATAGAGTT+CGG | - | chr1_2:41253785-41253804 | None:intergenic | 35.0% | |
| TTGAAGCAAGCAATTGAACA+CGG | + | chr1_2:41253792-41253811 | Msa0070640:intron | 35.0% | |
| !! | ATTTTCTCGTTTTATTGGCC+TGG | + | chr1_2:41254095-41254114 | Msa0070640:intron | 35.0% |
| TGCTATTGCTGTATCTTTCA+TGG | + | chr1_2:41254159-41254178 | Msa0070640:intron | 35.0% | |
| GCTATTGCTGTATCTTTCAT+GGG | + | chr1_2:41254160-41254179 | Msa0070640:intron | 35.0% | |
| TCACTTAATACCAGGAATAG+AGG | - | chr1_2:41254304-41254323 | None:intergenic | 35.0% | |
| TGCAAATCTCACTTAATACC+AGG | - | chr1_2:41254312-41254331 | None:intergenic | 35.0% | |
| !! | TTATCGATTCAAGATACCAC+TGG | + | chr1_2:41254368-41254387 | Msa0070640:intron | 35.0% |
| !! | TCTGTAGTTTCTAGAGCATA+TGG | + | chr1_2:41254450-41254469 | Msa0070640:CDS | 35.0% |
| AAAGGTTGTTCAGAAACTCA+AGG | + | chr1_2:41254485-41254504 | Msa0070640:CDS | 35.0% | |
| CTTGATCCCGTAACTATCAA+TGG | - | chr1_2:41251328-41251347 | None:intergenic | 40.0% | |
| GGGATCAAGTGTATGTCAAT+AGG | + | chr1_2:41251339-41251358 | Msa0070640:CDS | 40.0% | |
| TATGTCAATAGGGTTCCTTG+TGG | + | chr1_2:41251350-41251369 | Msa0070640:CDS | 40.0% | |
| TACAGCTACATGCATACCAT+GGG | - | chr1_2:41251405-41251424 | None:intergenic | 40.0% | |
| TTACAGCTACATGCATACCA+TGG | - | chr1_2:41251406-41251425 | None:intergenic | 40.0% | |
| AAGCTCTTGAGAAAATGACG+AGG | + | chr1_2:41251628-41251647 | Msa0070640:CDS | 40.0% | |
| AGCTCTTGAGAAAATGACGA+GGG | + | chr1_2:41251629-41251648 | Msa0070640:CDS | 40.0% | |
| TCTCAGAATCTGCAACTATC+AGG | + | chr1_2:41251726-41251745 | Msa0070640:CDS | 40.0% | |
| CTATCTTCCCGATTCCTAAA+TGG | - | chr1_2:41251759-41251778 | None:intergenic | 40.0% | |
| !! | ATCGGGAAGATAGTTCTAGT+TGG | + | chr1_2:41251766-41251785 | Msa0070640:intron | 40.0% |
| !! | TCTAGTTGGATGCTTTTTGG+GGG | + | chr1_2:41251780-41251799 | Msa0070640:intron | 40.0% |
| TTGCATTAGACATCACCAAC+AGG | - | chr1_2:41251810-41251829 | None:intergenic | 40.0% | |
| CAAAACTTAGCCAAACAGCT+TGG | + | chr1_2:41251827-41251846 | Msa0070640:intron | 40.0% | |
| AAGTAAAGGTCCAAGCTGTT+TGG | - | chr1_2:41251840-41251859 | None:intergenic | 40.0% | |
| CCTAGCACAACCTTCTTTAT+GGG | - | chr1_2:41251923-41251942 | None:intergenic | 40.0% | |
| ACCTAGCACAACCTTCTTTA+TGG | - | chr1_2:41251924-41251943 | None:intergenic | 40.0% | |
| AGTGTTGTCAAATATCGGCA+TGG | + | chr1_2:41251980-41251999 | Msa0070640:intron | 40.0% | |
| ! | GTGTTATTGATTGCAGATGG+TGG | - | chr1_2:41252129-41252148 | None:intergenic | 40.0% |
| ! | TTGCATTAATGGATGCGAGA+AGG | + | chr1_2:41252422-41252441 | Msa0070640:CDS | 40.0% |
| ! | TGCATTAATGGATGCGAGAA+GGG | + | chr1_2:41252423-41252442 | Msa0070640:CDS | 40.0% |
| ATTCCGGTAAAATGCTCACT+TGG | + | chr1_2:41252472-41252491 | Msa0070640:intron | 40.0% | |
| ! | AAGCCAAGTGAGCATTTTAC+CGG | - | chr1_2:41252478-41252497 | None:intergenic | 40.0% |
| TAAGATGCACCAAACACTAC+TGG | + | chr1_2:41252581-41252600 | Msa0070640:intron | 40.0% | |
| !! | TCAATTAGAGTATCGCCTCA+TGG | + | chr1_2:41252647-41252666 | Msa0070640:intron | 40.0% |
| AACCAACTTAATGAGGTCAG+AGG | - | chr1_2:41252793-41252812 | None:intergenic | 40.0% | |
| AATCCCAGTTCTGCTTAATC+AGG | + | chr1_2:41252815-41252834 | Msa0070640:intron | 40.0% | |
| TCTCCTGATTAAGCAGAACT+GGG | - | chr1_2:41252821-41252840 | None:intergenic | 40.0% | |
| ATCTCCTGATTAAGCAGAAC+TGG | - | chr1_2:41252822-41252841 | None:intergenic | 40.0% | |
| TGTTGTCGGAATCAGAGTTT+AGG | + | chr1_2:41252916-41252935 | Msa0070640:intron | 40.0% | |
| ! | CAATGAGTTGGATCCAAACA+TGG | - | chr1_2:41253074-41253093 | None:intergenic | 40.0% |
| GGAACTTGTGTGTCCAATAT+AGG | + | chr1_2:41253437-41253456 | Msa0070640:intron | 40.0% | |
| CCAAAATCTGTAAGGACAGT+TGG | - | chr1_2:41253586-41253605 | None:intergenic | 40.0% | |
| ! | CCAACTGTCCTTACAGATTT+TGG | + | chr1_2:41253583-41253602 | Msa0070640:intron | 40.0% |
| !!! | GGGATTAAATTTTTTGGGCG+AGG | + | chr1_2:41253703-41253722 | Msa0070640:CDS | 40.0% |
| TAAATAATGCCAGGGGAAGA+GGG | + | chr1_2:41253903-41253922 | Msa0070640:intron | 40.0% | |
| ATTCAAGATACCACTGGAAG+TGG | + | chr1_2:41254374-41254393 | Msa0070640:intron | 40.0% | |
| AGAAACTACAGAATCAGGTG+CGG | - | chr1_2:41254442-41254461 | None:intergenic | 40.0% | |
| !! | GCTCTAGAAACTACAGAATC+AGG | - | chr1_2:41254447-41254466 | None:intergenic | 40.0% |
| ACAGCTACATGCATACCATG+GGG | - | chr1_2:41251404-41251423 | None:intergenic | 45.0% | |
| GCTCTTGAGAAAATGACGAG+GGG | + | chr1_2:41251630-41251649 | Msa0070640:CDS | 45.0% | |
| AAATGACGAGGGGAGTTAAC+TGG | + | chr1_2:41251640-41251659 | Msa0070640:CDS | 45.0% | |
| AATGACGAGGGGAGTTAACT+GGG | + | chr1_2:41251641-41251660 | Msa0070640:CDS | 45.0% | |
| CCCATAAAGAAGGTTGTGCT+AGG | + | chr1_2:41251920-41251939 | Msa0070640:intron | 45.0% | |
| GTTGTCAAATATCGGCATGG+CGG | + | chr1_2:41251983-41252002 | Msa0070640:intron | 45.0% | |
| TCTACCACCACAATCTGTCA+TGG | - | chr1_2:41252011-41252030 | None:intergenic | 45.0% | |
| ! | ACCACCATGGCCAATTTTGA+AGG | + | chr1_2:41252041-41252060 | Msa0070640:intron | 45.0% |
| TCCTTCAAAATTGGCCATGG+TGG | - | chr1_2:41252045-41252064 | None:intergenic | 45.0% | |
| CCATCCTTCAAAATTGGCCA+TGG | - | chr1_2:41252048-41252067 | None:intergenic | 45.0% | |
| !! | CCATGGCCAATTTTGAAGGA+TGG | + | chr1_2:41252045-41252064 | Msa0070640:intron | 45.0% |
| ACGACGCCATCCTTCAAAAT+TGG | - | chr1_2:41252054-41252073 | None:intergenic | 45.0% | |
| !! | TTGATTGCAGATGGTGGACA+TGG | - | chr1_2:41252123-41252142 | None:intergenic | 45.0% |
| GTCATGGCTTCTTCTATGGT+AGG | + | chr1_2:41252370-41252389 | Msa0070640:intron | 45.0% | |
| ! | GCATTAATGGATGCGAGAAG+GGG | + | chr1_2:41252424-41252443 | Msa0070640:CDS | 45.0% |
| TGCCTCTGACCTCATTAAGT+TGG | + | chr1_2:41252788-41252807 | Msa0070640:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_2:41253004-41253023 | Msa0070640:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_2:41253005-41253024 | Msa0070640:intron | 45.0% |
| ! | AGTTCCACAGCATTTGAGAC+CGG | - | chr1_2:41253182-41253201 | None:intergenic | 45.0% |
| ACACCTGGTCTCAAATGTTG+TGG | + | chr1_2:41253348-41253367 | Msa0070640:intron | 45.0% | |
| ! | GTTCCACAACATTTGAGACC+AGG | - | chr1_2:41253354-41253373 | None:intergenic | 45.0% |
| GGTCTCAAATGTTGTGGAAC+TGG | + | chr1_2:41253354-41253373 | Msa0070640:intron | 45.0% | |
| TATGAAGGTTCGCCACAATG+TGG | - | chr1_2:41253641-41253660 | None:intergenic | 45.0% | |
| TCATAGCACAGCCACTGAAA+TGG | + | chr1_2:41253682-41253701 | Msa0070640:CDS | 45.0% | |
| CATAGCACAGCCACTGAAAT+GGG | + | chr1_2:41253683-41253702 | Msa0070640:CDS | 45.0% | |
| CTAAATAATGCCAGGGGAAG+AGG | + | chr1_2:41253902-41253921 | Msa0070640:intron | 45.0% | |
| !! | TTCTCGTTTTATTGGCCTGG+TGG | + | chr1_2:41254098-41254117 | Msa0070640:intron | 45.0% |
| AACAGCACAACCTCTATTCC+TGG | + | chr1_2:41254291-41254310 | Msa0070640:intron | 45.0% | |
| ATCAGGGAAGCTTGTGATCA+AGG | + | chr1_2:41254399-41254418 | Msa0070640:CDS | 45.0% | |
| TCAGGGAAGCTTGTGATCAA+GGG | + | chr1_2:41254400-41254419 | Msa0070640:CDS | 45.0% | |
| ATGACGAGGGGAGTTAACTG+GGG | + | chr1_2:41251642-41251661 | Msa0070640:CDS | 50.0% | |
| CTGGTGATAGATATGCCTCC+TGG | + | chr1_2:41251678-41251697 | Msa0070640:CDS | 50.0% | |
| ATAGATATGCCTCCTGGCAC+TGG | + | chr1_2:41251684-41251703 | Msa0070640:CDS | 50.0% | |
| ATTTGGACATCACCAGTGCC+AGG | - | chr1_2:41251699-41251718 | None:intergenic | 50.0% | |
| TTTGAAGGATGGCGTCGTCA+TGG | + | chr1_2:41252056-41252075 | Msa0070640:intron | 50.0% | |
| !! | ATTGCAGATGGTGGACATGG+TGG | - | chr1_2:41252120-41252139 | None:intergenic | 50.0% |
| !! | AGAGTATCGCCTCATGGTCA+TGG | + | chr1_2:41252653-41252672 | Msa0070640:intron | 50.0% |
| ! | GAGTATCGCCTCATGGTCAT+GGG | + | chr1_2:41252654-41252673 | Msa0070640:intron | 50.0% |
| AGTATCGCCTCATGGTCATG+GGG | + | chr1_2:41252655-41252674 | Msa0070640:intron | 50.0% | |
| GATGAATCCCCATGACCATG+AGG | - | chr1_2:41252665-41252684 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_2:41253006-41253025 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_2:41253003-41253022 | Msa0070640:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_2:41253009-41253028 | Msa0070640:intron | 50.0% | |
| ! | GTTCCACAGCATTTGAGACC+GGG | - | chr1_2:41253181-41253200 | None:intergenic | 50.0% |
| GGTCTCAAATGCTGTGGAAC+TGG | + | chr1_2:41253181-41253200 | Msa0070640:intron | 50.0% | |
| AACTGCTTGTGTCTACCACC+AGG | - | chr1_2:41254116-41254135 | None:intergenic | 50.0% | |
| TACCACTGGAAGTGGAGATC+AGG | + | chr1_2:41254382-41254401 | Msa0070640:CDS | 50.0% | |
| ACCACTGGAAGTGGAGATCA+GGG | + | chr1_2:41254383-41254402 | Msa0070640:CDS | 50.0% | |
| ! | TCGGGGCATTCTTCTCCACA+AGG | - | chr1_2:41251368-41251387 | None:intergenic | 55.0% |
| AGAAGAATGCCCCGATCGTC+TGG | + | chr1_2:41251373-41251392 | Msa0070640:CDS | 55.0% | |
| TGACGAGGGGAGTTAACTGG+GGG | + | chr1_2:41251643-41251662 | Msa0070640:CDS | 55.0% | |
| CTGGGGGAACCTTGACATTC+TGG | + | chr1_2:41251659-41251678 | Msa0070640:CDS | 55.0% | |
| !! | CTTTTTGGGGGATCGCCTGT+TGG | + | chr1_2:41251792-41251811 | Msa0070640:intron | 55.0% |
| ! | GGTGCCATGACAGATTGTGG+TGG | + | chr1_2:41252004-41252023 | Msa0070640:intron | 55.0% |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_2:41253011-41253030 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_2:41253017-41253036 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_2:41253018-41253037 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_2:41253017-41253036 | Msa0070640:intron | 55.0% | |
| ACACCCGGTCTCAAATGCTG+TGG | + | chr1_2:41253175-41253194 | Msa0070640:intron | 55.0% | |
| GACATTGTACCCTCTTCCCC+TGG | - | chr1_2:41253915-41253934 | None:intergenic | 55.0% | |
| TCCCTGATCTCCACTTCCAG+TGG | - | chr1_2:41254387-41254406 | None:intergenic | 55.0% | |
| !! | TCAAGGGCACCCGATAGTGT+TGG | + | chr1_2:41254416-41254435 | Msa0070640:CDS | 55.0% |
| TCAGGTGCGGCCAACACTAT+CGG | - | chr1_2:41254429-41254448 | None:intergenic | 55.0% | |
| AATGCCCCGATCGTCTGGAG+AGG | + | chr1_2:41251378-41251397 | Msa0070640:CDS | 60.0% | |
| ATGGGGCCTCTCCAGACGAT+CGG | - | chr1_2:41251387-41251406 | None:intergenic | 60.0% | |
| TGGACATCACCAGTGCCAGG+AGG | - | chr1_2:41251696-41251715 | None:intergenic | 60.0% | |
| !! | GGCGGTGCCATGACAGATTG+TGG | + | chr1_2:41252001-41252020 | Msa0070640:intron | 60.0% |
| ! | GGCGTCGTCATGGCGTTTTG+TGG | + | chr1_2:41252066-41252085 | Msa0070640:intron | 60.0% |
| CAGGTGCGGCCAACACTATC+GGG | - | chr1_2:41254428-41254447 | None:intergenic | 60.0% | |
| TGGGGCCTCTCCAGACGATC+GGG | - | chr1_2:41251386-41251405 | None:intergenic | 65.0% | |
| GATCGTCTGGAGAGGCCCCA+TGG | + | chr1_2:41251386-41251405 | Msa0070640:CDS | 65.0% | |
| GGGGCCTCTCCAGACGATCG+GGG | - | chr1_2:41251385-41251404 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41251312 | 41254539 | 41251312 | ID=Msa0070640;Name=Msa0070640 |
| chr1_2 | mRNA | 41251312 | 41254539 | 41251312 | ID=Msa0070640-mRNA-1;Parent=Msa0070640;Name=Msa0070640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|197 |
| chr1_2 | exon | 41251312 | 41251407 | 41251312 | ID=Msa0070640-mRNA-1:exon:12556;Parent=Msa0070640-mRNA-1 |
| chr1_2 | exon | 41251621 | 41251747 | 41251621 | ID=Msa0070640-mRNA-1:exon:12557;Parent=Msa0070640-mRNA-1 |
| chr1_2 | exon | 41252392 | 41252477 | 41252392 | ID=Msa0070640-mRNA-1:exon:12558;Parent=Msa0070640-mRNA-1 |
| chr1_2 | exon | 41253599 | 41253724 | 41253599 | ID=Msa0070640-mRNA-1:exon:12559;Parent=Msa0070640-mRNA-1 |
| chr1_2 | exon | 41254381 | 41254539 | 41254381 | ID=Msa0070640-mRNA-1:exon:12560;Parent=Msa0070640-mRNA-1 |
| chr1_2 | CDS | 41251312 | 41251407 | 41251312 | ID=Msa0070640-mRNA-1:cds;Parent=Msa0070640-mRNA-1 |
| chr1_2 | CDS | 41251621 | 41251747 | 41251621 | ID=Msa0070640-mRNA-1:cds;Parent=Msa0070640-mRNA-1 |
| chr1_2 | CDS | 41252392 | 41252477 | 41252392 | ID=Msa0070640-mRNA-1:cds;Parent=Msa0070640-mRNA-1 |
| chr1_2 | CDS | 41253599 | 41253724 | 41253599 | ID=Msa0070640-mRNA-1:cds;Parent=Msa0070640-mRNA-1 |
| chr1_2 | CDS | 41254381 | 41254539 | 41254381 | ID=Msa0070640-mRNA-1:cds;Parent=Msa0070640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
