AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070620 MtrunA17_Chr1g0184451 98.974 195 2 0 1 195 85 279 7.28e-144 401
Msa0070620 MtrunA17_Chr6g0485031 37.306 193 107 4 1 183 241 429 4.01e-36 132
Msa0070620 MtrunA17_Chr1g0153571 31.481 216 102 6 12 186 133 343 1.47e-20 87.4
Msa0070620 MtrunA17_Chr1g0151421 31.481 216 102 6 12 186 134 344 6.25e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070620 AT4G19540.1 66.146 192 65 0 1 192 106 297 3.44e-97 285
Msa0070620 AT3G24430.1 38.251 183 109 2 1 183 240 418 3.11e-38 138
Msa0070620 AT5G50960.1 31.507 219 105 5 5 181 128 343 4.07e-27 105

Find 111 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAAGATGTTGCATTAA+TGG 0.159802 1_2:-41234858 Msa0070620:CDS
GGCGAACCTTCATATATATT+TGG 0.186512 1_2:-41233624 Msa0070620:CDS
TTATGCGAACAGAAAATTAT+TGG 0.216334 1_2:+41235987 None:intergenic
ATGCCATTCCTTAAGTTATA+AGG 0.255044 1_2:-41232435 Msa0070620:three_prime_UTR
GATTCTGAGACATAGATATT+TGG 0.283473 1_2:+41235555 None:intergenic
ACCCCGGTTTAAACAGCATT+AGG 0.317172 1_2:+41232667 None:intergenic
TTCCCTAATGCTGTTTAAAC+CGG 0.323788 1_2:-41232670 Msa0070620:three_prime_UTR
AAATGACGAGGGGAGTTAAC+TGG 0.330730 1_2:-41235628 Msa0070620:CDS
GTTCAATAAAGTTGATATTC+CGG 0.350862 1_2:-41234813 Msa0070620:intron
GTGGGAAGGTTATCATCTTT+AGG 0.350881 1_2:-41232382 Msa0070620:three_prime_UTR
GATACCATAGCTATTGCTTC+TGG 0.358686 1_2:-41238036 Msa0070620:five_prime_UTR
GCGAAGCATCTTCGCATTGA+TGG 0.362197 1_2:-41238066 Msa0070620:five_prime_UTR
GGGATCAAGTGTATGTCAAT+AGG 0.367929 1_2:-41235929 Msa0070620:CDS
TCTCAGAATCTGCAACTATC+AGG 0.373762 1_2:-41235542 Msa0070620:intron
AAGCAATTGATTCAACATAT+AGG 0.377660 1_2:+41238333 None:intergenic
TCTGTAGTTTCTAGAGCATA+TGG 0.381576 1_2:-41232821 Msa0070620:CDS
TGGGGCCTCTCCAGACGATC+GGG 0.385203 1_2:+41235885 None:intergenic
TGATTCCCATTGATAGTTAC+GGG 0.385809 1_2:-41235949 Msa0070620:CDS
AGAAGAATGCCCCGATCGTC+TGG 0.396775 1_2:-41235895 Msa0070620:CDS
GTGTCGATGTTCATCATGAT+AGG 0.396838 1_2:+41236920 None:intergenic
TACCACTGGAAGTGGAGATC+AGG 0.399284 1_2:-41232889 Msa0070620:CDS
GATATACCTTGAGTGACTTC+AGG 0.399695 1_2:+41236893 None:intergenic
GCTCTAGAAACTACAGAATC+AGG 0.405926 1_2:+41232827 None:intergenic
CCCCGGTTTAAACAGCATTA+GGG 0.409503 1_2:+41232668 None:intergenic
GTAAGTTCCAATTGAAGGTT+GGG 0.411148 1_2:-41236976 Msa0070620:five_prime_UTR
GGTTGTGTTGGATGCATTGT+GGG 0.419268 1_2:-41232400 Msa0070620:three_prime_UTR
TGCAAGTAAGTTCCAATTGA+AGG 0.420623 1_2:-41236981 Msa0070620:five_prime_UTR
CAAGTAACCCAACCTTCAAT+TGG 0.422756 1_2:+41236969 None:intergenic
TCATAGCACAGCCACTGAAA+TGG 0.425764 1_2:-41233589 Msa0070620:CDS
ATGATTCCCATTGATAGTTA+CGG 0.432104 1_2:-41235950 Msa0070620:CDS
TTAATTTAACTTAAATATTG+AGG 0.432443 1_2:-41232492 Msa0070620:three_prime_UTR
GTTCATCATGATAGGAATGT+TGG 0.432777 1_2:+41236928 None:intergenic
CTTGATCCCGTAACTATCAA+TGG 0.438569 1_2:+41235943 None:intergenic
CATAGCACAGCCACTGAAAT+GGG 0.443169 1_2:-41233588 Msa0070620:CDS
ATCAGGGAAGCTTGTGATCA+AGG 0.450807 1_2:-41232872 Msa0070620:CDS
GGATCAAGTGTATGTCAATA+GGG 0.458082 1_2:-41235928 Msa0070620:CDS
TTACTTGATGCTGATGTGTA+TGG 0.464843 1_2:-41236953 Msa0070620:five_prime_UTR
ATATGGAAATATAGCTGAAA+AGG 0.465410 1_2:-41232804 Msa0070620:CDS
ATAGCTATTGCTTCTGGTAA+AGG 0.466248 1_2:-41238030 Msa0070620:five_prime_UTR
ACATTTCATAGTAAAATCTC+TGG 0.468648 1_2:+41232749 None:intergenic
TCAGGTGCGGCCAACACTAT+CGG 0.472607 1_2:+41232845 None:intergenic
TTCATCATGATAGGAATGTT+GGG 0.479590 1_2:+41236929 None:intergenic
CCTTTACCAAATATATATGA+AGG 0.479977 1_2:+41233618 None:intergenic
TCCCTAATGCTGTTTAAACC+GGG 0.482374 1_2:-41232669 Msa0070620:three_prime_UTR
CAGGTGCGGCCAACACTATC+GGG 0.485473 1_2:+41232846 None:intergenic
TGCATTAATGGATGCGAGAA+GGG 0.486805 1_2:-41234846 Msa0070620:CDS
GCACTTTGTTTAGTTTGAGT+TGG 0.486889 1_2:+41238406 None:intergenic
AATGACGAGGGGAGTTAACT+GGG 0.488841 1_2:-41235627 Msa0070620:CDS
ATAGATATGCCTCCTGGCAC+TGG 0.493130 1_2:-41235584 Msa0070620:CDS
TGGTTGTGTTGGATGCATTG+TGG 0.497597 1_2:-41232401 Msa0070620:three_prime_UTR
AGTAAGTTCCAATTGAAGGT+TGG 0.499750 1_2:-41236977 Msa0070620:five_prime_UTR
ATGGGGCCTCTCCAGACGAT+CGG 0.500251 1_2:+41235884 None:intergenic
ATTCAAGATACCACTGGAAG+TGG 0.501090 1_2:-41232897 Msa0070620:intron
CCTTCATATATATTTGGTAA+AGG 0.504163 1_2:-41233618 Msa0070620:CDS
CATATATATTTGGTAAAGGA+GGG 0.512882 1_2:-41233614 Msa0070620:CDS
CATCAAAGTTGATGAGGCCG+AGG 0.513994 1_2:-41238212 Msa0070620:five_prime_UTR
TTGATCCCGTAACTATCAAT+GGG 0.516228 1_2:+41235944 None:intergenic
TCCATTAATGCAACATCTTG+AGG 0.518038 1_2:+41234857 None:intergenic
TTTGTTTAATAAGCAGTTGG+TGG 0.522953 1_2:-41232552 Msa0070620:three_prime_UTR
TCATATATATTTGGTAAAGG+AGG 0.524591 1_2:-41233615 Msa0070620:CDS
GTGTTGGATGCATTGTGGGA+AGG 0.525014 1_2:-41232396 Msa0070620:three_prime_UTR
CTGGTGATAGATATGCCTCC+TGG 0.527506 1_2:-41235590 Msa0070620:CDS
ATGGCATAACAAAACACTGC+TGG 0.543288 1_2:+41232451 None:intergenic
GTCGGCAAATCAACAACTGC+TGG 0.546887 1_2:-41238003 Msa0070620:intron
AAAATTTAATCCCATTTCAG+TGG 0.548951 1_2:+41233578 None:intergenic
TCAGGGAAGCTTGTGATCAA+GGG 0.553420 1_2:-41232871 Msa0070620:CDS
GATCGTCTGGAGAGGCCCCA+TGG 0.554959 1_2:-41235882 Msa0070620:intron
ATTTGGACATCACCAGTGCC+AGG 0.555591 1_2:+41235572 None:intergenic
GTGGTTCTTCGACGTCACAT+AGG 0.557029 1_2:-41232533 Msa0070620:three_prime_UTR
GAACCTTATAACTTAAGGAA+TGG 0.558375 1_2:+41232432 None:intergenic
GCTTCTGGTAAAGGCGGTGT+CGG 0.565622 1_2:-41238021 Msa0070620:five_prime_UTR
ACCACTGGAAGTGGAGATCA+GGG 0.566063 1_2:-41232888 Msa0070620:CDS
TGCTTTAAATGTCCACATTG+TGG 0.569694 1_2:-41233645 Msa0070620:CDS
TATTCTTGACCTGGTAGATG+TGG 0.570381 1_2:-41232334 Msa0070620:three_prime_UTR
TTATCGATTCAAGATACCAC+TGG 0.571247 1_2:-41232903 Msa0070620:intron
TTGCATTAATGGATGCGAGA+AGG 0.572149 1_2:-41234847 Msa0070620:CDS
TGTAGTATAAGATAAGATGC+AGG 0.574515 1_2:-41232617 Msa0070620:three_prime_UTR
GGAAGAAAAGAGGACCGAGC+TGG 0.574856 1_2:-41232693 Msa0070620:three_prime_UTR
CACAATTACATTCAACAGCA+AGG 0.575940 1_2:+41238360 None:intergenic
ATATATATTTGGTAAAGGAG+GGG 0.592261 1_2:-41233613 Msa0070620:CDS
GCATTAATGGATGCGAGAAG+GGG 0.600484 1_2:-41234845 Msa0070620:CDS
CCCTAATGCTGTTTAAACCG+GGG 0.602722 1_2:-41232668 Msa0070620:three_prime_UTR
TCCCTGATCTCCACTTCCAG+TGG 0.604175 1_2:+41232887 None:intergenic
ATTTAAAAGTAAGCAAACCC+CGG 0.612515 1_2:+41232651 None:intergenic
AAAGAGATTTATTCTTGACC+TGG 0.613729 1_2:-41232343 Msa0070620:three_prime_UTR
CAGGGACTGGAGTGTTATGA+CGG 0.615582 1_2:+41232717 None:intergenic
TTACATTCAACAGCAAGGAA+TGG 0.615847 1_2:+41238365 None:intergenic
TTTACCAGAAGCAATAGCTA+TGG 0.617990 1_2:+41238032 None:intergenic
AAAGGTTGTTCAGAAACTCA+AGG 0.620310 1_2:-41232786 Msa0070620:CDS
CAGTCCCTGAGGAAGAAAAG+AGG 0.624588 1_2:-41232703 Msa0070620:three_prime_UTR
GGGGCCTCTCCAGACGATCG+GGG 0.629673 1_2:+41235886 None:intergenic
CATTCACATCAAAGTTGATG+AGG 0.635095 1_2:-41238218 Msa0070620:five_prime_UTR
TCAAGGGCACCCGATAGTGT+TGG 0.640121 1_2:-41232855 Msa0070620:CDS
AGCTCTTGAGAAAATGACGA+GGG 0.641120 1_2:-41235639 Msa0070620:CDS
AATGCCCCGATCGTCTGGAG+AGG 0.641120 1_2:-41235890 Msa0070620:CDS
ACAAATCTAAATCATATGTG+AGG 0.641335 1_2:+41232594 None:intergenic
TATCTATCACCAGAATGTCA+AGG 0.659018 1_2:+41235600 None:intergenic
ATCAAAGTTGATGAGGCCGA+GGG 0.661654 1_2:-41238211 Msa0070620:intron
ACAGCATTAGGGAACCAGCT+CGG 0.666743 1_2:+41232679 None:intergenic
GCTATTGCTTCTGGTAAAGG+CGG 0.674617 1_2:-41238027 Msa0070620:five_prime_UTR
ACAAAGCCTGAAGTCACTCA+AGG 0.675264 1_2:-41236899 Msa0070620:intron
TATGAAGGTTCGCCACAATG+TGG 0.675582 1_2:+41233633 None:intergenic
ATGACGAGGGGAGTTAACTG+GGG 0.676508 1_2:-41235626 Msa0070620:CDS
TCGGGGCATTCTTCTCCACA+AGG 0.698186 1_2:+41235903 None:intergenic
AGAAACTACAGAATCAGGTG+CGG 0.700617 1_2:+41232832 None:intergenic
AAGCTCTTGAGAAAATGACG+AGG 0.702011 1_2:-41235640 Msa0070620:CDS
GCTCTTGAGAAAATGACGAG+GGG 0.708702 1_2:-41235638 Msa0070620:CDS
TCATAACACTCCAGTCCCTG+AGG 0.719926 1_2:-41232714 Msa0070620:three_prime_UTR
TATGTCAATAGGGTTCCTTG+TGG 0.727496 1_2:-41235918 Msa0070620:CDS
TGACGAGGGGAGTTAACTGG+GGG 0.736165 1_2:-41235625 Msa0070620:CDS
TGGACATCACCAGTGCCAGG+AGG 0.736378 1_2:+41235575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTAACTTAAATATTG+AGG - chr1_2:41238244-41238263 Msa0070620:five_prime_UTR 10.0%
!!! TTTTTTTAAATTAAGATTGC+AGG - chr1_2:41233188-41233207 Msa0070620:intron 15.0%
!!! TTTTTTAAATTAAGATTGCA+GGG - chr1_2:41233189-41233208 Msa0070620:intron 15.0%
!!! AATTATTAAGCTTTGTTTTA+TGG - chr1_2:41234692-41234711 Msa0070620:intron 15.0%
!! AATAGTTAATGAAAATGAAA+AGG + chr1_2:41234921-41234940 None:intergenic 15.0%
!!! TTTATTTGAATTTTTATTGC+TGG - chr1_2:41235056-41235075 Msa0070620:intron 15.0%
!! TACTCTAATTGAATAATAAT+CGG + chr1_2:41236107-41236126 None:intergenic 15.0%
!!! ATTTGTTTTTACTTATTTCA+CGG - chr1_2:41236881-41236900 Msa0070620:intron 15.0%
!!! TGTCTTTCTTAATTAATTTT+GGG + chr1_2:41237426-41237445 None:intergenic 15.0%
!!! ATGTCTTTCTTAATTAATTT+TGG + chr1_2:41237427-41237446 None:intergenic 15.0%
!! AAATTAATTAAGAAAGACAT+AGG - chr1_2:41237427-41237446 Msa0070620:intron 15.0%
!! TATATTTCATTTAGAAGAAA+AGG + chr1_2:41237522-41237541 None:intergenic 15.0%
!!! CAAATTAGAAACAATTTTAG+AGG + chr1_2:41232922-41232941 None:intergenic 20.0%
!!! ATTGTTTCTAATTTGAAGTT+AGG - chr1_2:41232927-41232946 Msa0070620:intron 20.0%
!!! TTTTTAAATTAAGATTGCAG+GGG - chr1_2:41233190-41233209 Msa0070620:intron 20.0%
!! AATATTTCTCTATAATGTAC+TGG - chr1_2:41233870-41233889 Msa0070620:intron 20.0%
!! TAATCAGCAAATATTACATA+TGG + chr1_2:41234417-41234436 None:intergenic 20.0%
!!! TATTTGCTGATTATCATAAA+TGG - chr1_2:41234424-41234443 Msa0070620:intron 20.0%
!! ATAACTACAATTTATGAACT+CGG - chr1_2:41234591-41234610 Msa0070620:intron 20.0%
!! TTAAAATCTAGACAAAGTAA+AGG + chr1_2:41235322-41235341 None:intergenic 20.0%
!! ACAAAAATAACCAATGAAAA+AGG + chr1_2:41235819-41235838 None:intergenic 20.0%
!! ATTTACAAAAACTCATAATC+AGG + chr1_2:41235980-41235999 None:intergenic 20.0%
!!! GATTATGAGTTTTTGTAAAT+TGG - chr1_2:41235980-41235999 Msa0070620:five_prime_UTR 20.0%
!! TTATTTCAGTTTATTGTTGT+CGG - chr1_2:41236370-41236389 Msa0070620:intron 20.0%
!! AATAAATATGTAAATACACC+TGG - chr1_2:41236798-41236817 Msa0070620:intron 20.0%
!!! TGCTTCTATTATATGTTTTA+AGG - chr1_2:41236857-41236876 Msa0070620:intron 20.0%
!!! TGAAATGGGATTAAATTTTT+TGG - chr1_2:41237162-41237181 Msa0070620:intron 20.0%
!!! GAAATGGGATTAAATTTTTT+GGG - chr1_2:41237163-41237182 Msa0070620:intron 20.0%
!! AAAAAAAACTAAATAATGCC+AGG - chr1_2:41237358-41237377 Msa0070620:intron 20.0%
!! AAAAAAACTAAATAATGCCA+GGG - chr1_2:41237359-41237378 Msa0070620:intron 20.0%
!! TAAAACGAGAAAATGATTAT+CGG + chr1_2:41237553-41237572 None:intergenic 20.0%
!!! TAATCATTTTCTCGTTTTAT+TGG - chr1_2:41237554-41237573 Msa0070620:intron 20.0%
!! CCAAAAAAAAAAAAACTGAA+CGG + chr1_2:41237662-41237681 None:intergenic 20.0%
!!! CGTTCAGTTTTTTTTTTTTT+GGG - chr1_2:41237660-41237679 Msa0070620:intron 20.0%
!!! AATTTTGTTTAATAAGCAGT+TGG - chr1_2:41238181-41238200 Msa0070620:intron 20.0%
!! AAAAAGAACCTTATAACTTA+AGG + chr1_2:41238312-41238331 None:intergenic 20.0%
!! AAGCAATTGATTCAACATAT+AGG + chr1_2:41232406-41232425 None:intergenic 25.0%
!!! TTTTGATTAGGTTGAATTTG+AGG + chr1_2:41232444-41232463 None:intergenic 25.0%
! GTAGTGTTTGATAAAATTAG+CGG - chr1_2:41233109-41233128 Msa0070620:intron 25.0%
! GGGTTGAACAATAAATTTAA+GGG + chr1_2:41233389-41233408 None:intergenic 25.0%
!! TGGGTTGAACAATAAATTTA+AGG + chr1_2:41233390-41233409 None:intergenic 25.0%
! TTATTTCCATAAGTTCTTCA+GGG + chr1_2:41233554-41233573 None:intergenic 25.0%
!! ATTGTTTTCATAAGTTCTCT+CGG - chr1_2:41233591-41233610 Msa0070620:CDS 25.0%
!! AGTGATAATGTTAAAGCAAT+AGG - chr1_2:41234275-41234294 Msa0070620:intron 25.0%
!! TTTTAAATCATCCACTTCAT+TGG - chr1_2:41234464-41234483 Msa0070620:intron 25.0%
!! TCTCAACACATGATATTTTT+AGG - chr1_2:41234547-41234566 Msa0070620:intron 25.0%
! TTATGCGAACAGAAAATTAT+TGG + chr1_2:41234752-41234771 None:intergenic 25.0%
! CAAATAAAAAACAGTAGAAG+TGG + chr1_2:41235044-41235063 None:intergenic 25.0%
!! TTTTATTGCTGGATTATCAT+AGG - chr1_2:41235067-41235086 Msa0070620:intron 25.0%
! TGGGATTTATTGAATATATC+AGG + chr1_2:41235372-41235391 None:intergenic 25.0%
! TTCAATAAATCCCATAAAGA+AGG - chr1_2:41235378-41235397 Msa0070620:intron 25.0%
!!! TTGAAAGTGTTGTCAAATAT+CGG - chr1_2:41235443-41235462 Msa0070620:intron 25.0%
! TCAAAGGACAATTAGTAATT+TGG + chr1_2:41235762-41235781 None:intergenic 25.0%
! AATGAAAAAGGTTAAGTGAA+TGG + chr1_2:41235807-41235826 None:intergenic 25.0%
!!! ATTCACTTAACCTTTTTCAT+TGG - chr1_2:41235806-41235825 Msa0070620:intron 25.0%
!!! TTCATTGGTTATTTTTGTCA+TGG - chr1_2:41235821-41235840 Msa0070620:intron 25.0%
!!! GTTCAATAAAGTTGATATTC+CGG - chr1_2:41235923-41235942 Msa0070620:CDS 25.0%
!! ACAATATAAACATTTTGCCT+TGG + chr1_2:41236168-41236187 None:intergenic 25.0%
!! CATTAGGATTTTTAAATGCA+TGG + chr1_2:41236348-41236367 None:intergenic 25.0%
! CATGCATTTAAAAATCCTAA+TGG - chr1_2:41236346-41236365 Msa0070620:intron 25.0%
! ATAAACTGAAATAAGCCATT+AGG + chr1_2:41236364-41236383 None:intergenic 25.0%
!! ATTAGGATTTCTAGATTTAG+AGG + chr1_2:41236563-41236582 None:intergenic 25.0%
! TCTAAATCTAGAAATCCTAA+TGG - chr1_2:41236562-41236581 Msa0070620:intron 25.0%
! ATAAACTGAAATAAGCCATT+AGG + chr1_2:41236364-41236383 None:intergenic 25.0%
! AATAAATATGTAAACACACC+CGG - chr1_2:41236625-41236644 Msa0070620:intron 25.0%
! TGTTGCTAAAATTAGAGTTT+AGG - chr1_2:41236703-41236722 Msa0070620:intron 25.0%
! CATTAAGATTTCTAAATGCA+TGG + chr1_2:41236737-41236756 None:intergenic 25.0%
! CATGCATTTAGAAATCTTAA+TGG - chr1_2:41236735-41236754 Msa0070620:intron 25.0%
! TATATCAGCCATTTCTTATT+TGG - chr1_2:41236959-41236978 Msa0070620:five_prime_UTR 25.0%
! CCTTTACCAAATATATATGA+AGG + chr1_2:41237121-41237140 None:intergenic 25.0%
! CCTTCATATATATTTGGTAA+AGG - chr1_2:41237118-41237137 Msa0070620:intron 25.0%
! TCATATATATTTGGTAAAGG+AGG - chr1_2:41237121-41237140 Msa0070620:intron 25.0%
! CATATATATTTGGTAAAGGA+GGG - chr1_2:41237122-41237141 Msa0070620:intron 25.0%
! ATATATATTTGGTAAAGGAG+GGG - chr1_2:41237123-41237142 Msa0070620:intron 25.0%
! AAAATTTAATCCCATTTCAG+TGG + chr1_2:41237161-41237180 None:intergenic 25.0%
! AAAAAACTAAATAATGCCAG+GGG - chr1_2:41237360-41237379 Msa0070620:intron 25.0%
!!! CCGTTCAGTTTTTTTTTTTT+TGG - chr1_2:41237659-41237678 Msa0070620:intron 25.0%
!!! GTGCTGTTTTCAATAATTTA+AGG + chr1_2:41237744-41237763 None:intergenic 25.0%
! ATATGGAAATATAGCTGAAA+AGG - chr1_2:41237932-41237951 Msa0070620:intron 25.0%
! ACATTTCATAGTAAAATCTC+TGG + chr1_2:41237990-41238009 None:intergenic 25.0%
! ACAAATCTAAATCATATGTG+AGG + chr1_2:41238145-41238164 None:intergenic 25.0%
!!! GTTATAAGGTTCTTTTTTTG+TGG - chr1_2:41238315-41238334 Msa0070620:five_prime_UTR 25.0%
!!! GTGGATTTGAGATTTTGATT+AGG + chr1_2:41232456-41232475 None:intergenic 30.0%
! TTGATGTGAATGTTTTCTCA+GGG + chr1_2:41232510-41232529 None:intergenic 30.0%
! TTTGATGTGAATGTTTTCTC+AGG + chr1_2:41232511-41232530 None:intergenic 30.0%
!! TATCGTTTCATTTTGATCAG+TGG - chr1_2:41232626-41232645 Msa0070620:three_prime_UTR 30.0%
GATATAAGCCTATGTTTGAT+AGG - chr1_2:41232866-41232885 Msa0070620:CDS 30.0%
! CTTTGTTTGCTAAAGAATAG+CGG - chr1_2:41232991-41233010 Msa0070620:intron 30.0%
GAAAATGACAATTACCAAAC+AGG - chr1_2:41233296-41233315 Msa0070620:intron 30.0%
AAGACACATATTTGAGCTTA+TGG + chr1_2:41233356-41233375 None:intergenic 30.0%
AAATATGTGTCTTACCAAAC+AGG - chr1_2:41233363-41233382 Msa0070620:intron 30.0%
AATAAATTTAAGGGCCTGTT+TGG + chr1_2:41233380-41233399 None:intergenic 30.0%
GGATACATTTACACAAAAGT+GGG + chr1_2:41233409-41233428 None:intergenic 30.0%
AATGTAAAGTGGTTTCTGTT+CGG + chr1_2:41233430-41233449 None:intergenic 30.0%
AAAGTGAGAAGAATGTAAAG+TGG + chr1_2:41233441-41233460 None:intergenic 30.0%
CTTATTTCCATAAGTTCTTC+AGG + chr1_2:41233555-41233574 None:intergenic 30.0%
! TCAACTAATAAGAGCTTGTT+TGG + chr1_2:41233672-41233691 None:intergenic 30.0%
TTCATCATGATAGGAATGTT+GGG + chr1_2:41233810-41233829 None:intergenic 30.0%
! ATTTCTACATGTGTGCTTTT+AGG - chr1_2:41234179-41234198 Msa0070620:intron 30.0%
AAAATTGCTTGAATGTAGAG+TGG + chr1_2:41234255-41234274 None:intergenic 30.0%
AATCCAAAAAACCAATGAAG+TGG + chr1_2:41234478-41234497 None:intergenic 30.0%
!!! ACTTCATTGGTTTTTTGGAT+TGG - chr1_2:41234477-41234496 Msa0070620:intron 30.0%
ATCCAATACATAACTAGAAG+AGG - chr1_2:41234505-41234524 Msa0070620:intron 30.0%
! ATGATTCCCATTGATAGTTA+CGG - chr1_2:41234786-41234805 Msa0070620:intron 30.0%
!! GATTCTGAGACATAGATATT+TGG + chr1_2:41235184-41235203 None:intergenic 30.0%
TATCAGGTAACTAACCATTT+AGG - chr1_2:41235210-41235229 Msa0070620:intron 30.0%
GTAACTAACCATTTAGGAAT+CGG - chr1_2:41235216-41235235 Msa0070620:intron 30.0%
TAACTAACCATTTAGGAATC+GGG - chr1_2:41235217-41235236 Msa0070620:intron 30.0%
!! AGATTTTTCAATAACCACCA+TGG - chr1_2:41235496-41235515 Msa0070620:intron 30.0%
! AGCTTAAAATGATGAGCTTT+TGG - chr1_2:41235558-41235577 Msa0070620:CDS 30.0%
GATAAGAAAGGTCATTTCAA+AGG + chr1_2:41235778-41235797 None:intergenic 30.0%
GAATGGAAACTTGATAAGAA+AGG + chr1_2:41235790-41235809 None:intergenic 30.0%
TTTGCCTTGGAAAAACAATT+GGG + chr1_2:41236155-41236174 None:intergenic 30.0%
! TTTTGCCTTGGAAAAACAAT+TGG + chr1_2:41236156-41236175 None:intergenic 30.0%
CATTGTACCATTACTACATT+TGG - chr1_2:41236201-41236220 Msa0070620:intron 30.0%
CATTAGGATTTCTAAATGCA+TGG + chr1_2:41236418-41236437 None:intergenic 30.0%
CATGCATTTAGAAATCCTAA+TGG - chr1_2:41236416-41236435 Msa0070620:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr1_2:41236519-41236538 None:intergenic 30.0%
GTTCTATCATAAACCATGTT+TGG - chr1_2:41236523-41236542 Msa0070620:intron 30.0%
TCATTATCAGCAACCTATAT+TGG + chr1_2:41236918-41236937 None:intergenic 30.0%
TGTGAACACCAAATAAGAAA+TGG + chr1_2:41236970-41236989 None:intergenic 30.0%
TATGATTCCCAAAATCTGTA+AGG + chr1_2:41237059-41237078 None:intergenic 30.0%
!! GACTAAATTTTGAGAGATTG+AGG - chr1_2:41237475-41237494 Msa0070620:intron 30.0%
ATTTAAAAGTAAGCAAACCC+CGG + chr1_2:41238088-41238107 None:intergenic 30.0%
TGTAGTATAAGATAAGATGC+AGG - chr1_2:41238119-41238138 Msa0070620:intron 30.0%
TTTGTTTAATAAGCAGTTGG+TGG - chr1_2:41238184-41238203 Msa0070620:intron 30.0%
ATGCCATTCCTTAAGTTATA+AGG - chr1_2:41238301-41238320 Msa0070620:five_prime_UTR 30.0%
GAACCTTATAACTTAAGGAA+TGG + chr1_2:41238307-41238326 None:intergenic 30.0%
!!! TTCTTTTTTTGTGGTTGTGT+TGG - chr1_2:41238324-41238343 Msa0070620:five_prime_UTR 30.0%
AAAGAGATTTATTCTTGACC+TGG - chr1_2:41238393-41238412 Msa0070620:five_prime_UTR 30.0%
!! GCACTTTGTTTAGTTTGAGT+TGG + chr1_2:41232333-41232352 None:intergenic 35.0%
TTACATTCAACAGCAAGGAA+TGG + chr1_2:41232374-41232393 None:intergenic 35.0%
CACAATTACATTCAACAGCA+AGG + chr1_2:41232379-41232398 None:intergenic 35.0%
! TGATGTGAATGTTTTCTCAG+GGG + chr1_2:41232509-41232528 None:intergenic 35.0%
!! CATTCACATCAAAGTTGATG+AGG - chr1_2:41232518-41232537 Msa0070620:three_prime_UTR 35.0%
!! TTTCATTTTGATCAGTGGCT+AGG - chr1_2:41232631-41232650 Msa0070620:three_prime_UTR 35.0%
TTTACCAGAAGCAATAGCTA+TGG + chr1_2:41232707-41232726 None:intergenic 35.0%
ATAGCTATTGCTTCTGGTAA+AGG - chr1_2:41232706-41232725 Msa0070620:three_prime_UTR 35.0%
GCTATAAGCTGCAAATTGAA+GGG + chr1_2:41232767-41232786 None:intergenic 35.0%
TGCTATAAGCTGCAAATTGA+AGG + chr1_2:41232768-41232787 None:intergenic 35.0%
AAGCCTATGTTTGATAGGTT+TGG - chr1_2:41232871-41232890 Msa0070620:CDS 35.0%
CAACCAAACCTATCAAACAT+AGG + chr1_2:41232877-41232896 None:intergenic 35.0%
! CTATGTTTGATAGGTTTGGT+TGG - chr1_2:41232875-41232894 Msa0070620:CDS 35.0%
!!! TGGTTGGTTTTGAGTTGAAT+TGG - chr1_2:41232891-41232910 Msa0070620:CDS 35.0%
ATGACTGAAAAAGACCTGTT+TGG + chr1_2:41233313-41233332 None:intergenic 35.0%
CGGATACATTTACACAAAAG+TGG + chr1_2:41233410-41233429 None:intergenic 35.0%
TGCAAGTAAGTTCCAATTGA+AGG - chr1_2:41233755-41233774 Msa0070620:intron 35.0%
AGTAAGTTCCAATTGAAGGT+TGG - chr1_2:41233759-41233778 Msa0070620:intron 35.0%
GTAAGTTCCAATTGAAGGTT+GGG - chr1_2:41233760-41233779 Msa0070620:intron 35.0%
TTACTTGATGCTGATGTGTA+TGG - chr1_2:41233783-41233802 Msa0070620:intron 35.0%
GTTCATCATGATAGGAATGT+TGG + chr1_2:41233811-41233830 None:intergenic 35.0%
TACTGGTACAGACACAATAT+GGG - chr1_2:41233887-41233906 Msa0070620:intron 35.0%
TCAAATGTGATCACACATGT+CGG - chr1_2:41234048-41234067 Msa0070620:intron 35.0%
! GCATCGACAATTTAGGTTAA+AGG + chr1_2:41234104-41234123 None:intergenic 35.0%
!! CTATGTAGCATCGACAATTT+AGG + chr1_2:41234111-41234130 None:intergenic 35.0%
!! TGAGAAGCATTCATCTTCAA+TGG - chr1_2:41234150-41234169 Msa0070620:intron 35.0%
!!! CATCCACTTCATTGGTTTTT+TGG - chr1_2:41234472-41234491 Msa0070620:intron 35.0%
!!! CATTGGTTTTTTGGATTGGA+CGG - chr1_2:41234481-41234500 Msa0070620:intron 35.0%
! CTCCTCTTCTAGTTATGTAT+TGG + chr1_2:41234510-41234529 None:intergenic 35.0%
ATTATTGGCATGAACTGCAA+TGG + chr1_2:41234737-41234756 None:intergenic 35.0%
! TGATTCCCATTGATAGTTAC+GGG - chr1_2:41234787-41234806 Msa0070620:intron 35.0%
TTGATCCCGTAACTATCAAT+GGG + chr1_2:41234795-41234814 None:intergenic 35.0%
GGATCAAGTGTATGTCAATA+GGG - chr1_2:41234808-41234827 Msa0070620:intron 35.0%
AATTTCTGCTTTCCCTTGAT+TGG - chr1_2:41234892-41234911 Msa0070620:intron 35.0%
ATGAAAAGGAGACCAATCAA+GGG + chr1_2:41234907-41234926 None:intergenic 35.0%
AATGAAAAGGAGACCAATCA+AGG + chr1_2:41234908-41234927 None:intergenic 35.0%
!! CCAAGAACTAAAGTTCTAGA+AGG + chr1_2:41234966-41234985 None:intergenic 35.0%
!! CCTTCTAGAACTTTAGTTCT+TGG - chr1_2:41234963-41234982 Msa0070620:intron 35.0%
TATCTATCACCAGAATGTCA+AGG + chr1_2:41235139-41235158 None:intergenic 35.0%
!! AGTTCTAGTTGGATGCTTTT+TGG - chr1_2:41235245-41235264 Msa0070620:intron 35.0%
!! GTTCTAGTTGGATGCTTTTT+GGG - chr1_2:41235246-41235265 Msa0070620:intron 35.0%
!! TTCTAGTTGGATGCTTTTTG+GGG - chr1_2:41235247-41235266 Msa0070620:intron 35.0%
! TCAGTGTTATTGATTGCAGA+TGG + chr1_2:41235600-41235619 None:intergenic 35.0%
!! GAACTGAAGTGTCGTAATAT+TGG - chr1_2:41235720-41235739 Msa0070620:intron 35.0%
! TTTTGTCATGGCTTCTTCTA+TGG - chr1_2:41235833-41235852 Msa0070620:intron 35.0%
TCCTCAAGATGTTGCATTAA+TGG - chr1_2:41235878-41235897 Msa0070620:intron 35.0%
TCCATTAATGCAACATCTTG+AGG + chr1_2:41235882-41235901 None:intergenic 35.0%
TGAATGAAACCAGTAGTGTT+TGG + chr1_2:41236061-41236080 None:intergenic 35.0%
!! TCATCCCAATTGTTTTTCCA+AGG - chr1_2:41236148-41236167 Msa0070620:intron 35.0%
TACCATTACTACATTTGGCA+TGG - chr1_2:41236206-41236225 Msa0070620:intron 35.0%
ATCCATGCCAAATGTAGTAA+TGG + chr1_2:41236211-41236230 None:intergenic 35.0%
GGATTTCAACCAACTTAATG+AGG + chr1_2:41236268-41236287 None:intergenic 35.0%
! ATCAGGAGATTGCATTTTGT+CGG - chr1_2:41236300-41236319 Msa0070620:intron 35.0%
! TTTTGTCGGAATCAGAGTTT+AGG - chr1_2:41236314-41236333 Msa0070620:intron 35.0%
! TGTTGTTGTTGTATGCCATT+AGG + chr1_2:41236434-41236453 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_2:41236551-41236570 None:intergenic 35.0%
AATGGCTGATATATCAATGC+AGG + chr1_2:41236952-41236971 None:intergenic 35.0%
GATTAACAGACATCAAAGCT+AGG + chr1_2:41237020-41237039 None:intergenic 35.0%
! CAACTGTCCTTACAGATTTT+GGG - chr1_2:41237049-41237068 Msa0070620:intron 35.0%
! TGCTTTAAATGTCCACATTG+TGG - chr1_2:41237091-41237110 Msa0070620:intron 35.0%
GGCGAACCTTCATATATATT+TGG - chr1_2:41237112-41237131 Msa0070620:intron 35.0%
TTGCTTGCTTCAATAGAGTT+CGG + chr1_2:41237250-41237269 None:intergenic 35.0%
TTGAAGCAAGCAATTGAACA+CGG - chr1_2:41237257-41237276 Msa0070620:intron 35.0%
!! ATTTTCTCGTTTTATTGGCC+TGG - chr1_2:41237559-41237578 Msa0070620:intron 35.0%
TGCTATTGCTGTATCTTTCA+TGG - chr1_2:41237623-41237642 Msa0070620:intron 35.0%
GCTATTGCTGTATCTTTCAT+GGG - chr1_2:41237624-41237643 Msa0070620:intron 35.0%
TCACTTAATACCAGGAATAG+AGG + chr1_2:41237769-41237788 None:intergenic 35.0%
TGCAAATCTCACTTAATACC+AGG + chr1_2:41237777-41237796 None:intergenic 35.0%
!! TTATCGATTCAAGATACCAC+TGG - chr1_2:41237833-41237852 Msa0070620:intron 35.0%
!! TCTGTAGTTTCTAGAGCATA+TGG - chr1_2:41237915-41237934 Msa0070620:intron 35.0%
AAAGGTTGTTCAGAAACTCA+AGG - chr1_2:41237950-41237969 Msa0070620:intron 35.0%
! TTCCCTAATGCTGTTTAAAC+CGG - chr1_2:41238066-41238085 Msa0070620:five_prime_UTR 35.0%
ATCTTCTGTATGTGATGTCG+GGG + chr1_2:41232486-41232505 None:intergenic 40.0%
GATCTTCTGTATGTGATGTC+GGG + chr1_2:41232487-41232506 None:intergenic 40.0%
GGATCTTCTGTATGTGATGT+CGG + chr1_2:41232488-41232507 None:intergenic 40.0%
GATACCATAGCTATTGCTTC+TGG - chr1_2:41232700-41232719 Msa0070620:three_prime_UTR 40.0%
! ACTGATAAGCTAGCTTGTAG+CGG - chr1_2:41233017-41233036 Msa0070620:intron 40.0%
AAGCTACCCTGAAGAACTTA+TGG - chr1_2:41233545-41233564 Msa0070620:intron 40.0%
CAAGTAACCCAACCTTCAAT+TGG + chr1_2:41233770-41233789 None:intergenic 40.0%
! GTGTCGATGTTCATCATGAT+AGG + chr1_2:41233819-41233838 None:intergenic 40.0%
GATATACCTTGAGTGACTTC+AGG + chr1_2:41233846-41233865 None:intergenic 40.0%
! GTACTGGTACAGACACAATA+TGG - chr1_2:41233886-41233905 Msa0070620:intron 40.0%
! TGTCAGTTTCGTAAGAGTGT+CGG + chr1_2:41233990-41234009 None:intergenic 40.0%
!!! ATCACACATGTCGGTTTTGT+AGG - chr1_2:41234057-41234076 Msa0070620:intron 40.0%
GCATTCATCTTCAATGGCAT+TGG - chr1_2:41234156-41234175 Msa0070620:intron 40.0%
AACTGCAATGGAAGATGGAA+AGG + chr1_2:41234725-41234744 None:intergenic 40.0%
CTTGATCCCGTAACTATCAA+TGG + chr1_2:41234796-41234815 None:intergenic 40.0%
GGGATCAAGTGTATGTCAAT+AGG - chr1_2:41234807-41234826 Msa0070620:intron 40.0%
TATGTCAATAGGGTTCCTTG+TGG - chr1_2:41234818-41234837 Msa0070620:CDS 40.0%
TACAGCTACATGCATACCAT+GGG + chr1_2:41234873-41234892 None:intergenic 40.0%
TTACAGCTACATGCATACCA+TGG + chr1_2:41234874-41234893 None:intergenic 40.0%
AAGCTCTTGAGAAAATGACG+AGG - chr1_2:41235096-41235115 Msa0070620:intron 40.0%
AGCTCTTGAGAAAATGACGA+GGG - chr1_2:41235097-41235116 Msa0070620:intron 40.0%
TCTCAGAATCTGCAACTATC+AGG - chr1_2:41235194-41235213 Msa0070620:intron 40.0%
CTATCTTCCCGATTCCTAAA+TGG + chr1_2:41235227-41235246 None:intergenic 40.0%
!! ATCGGGAAGATAGTTCTAGT+TGG - chr1_2:41235234-41235253 Msa0070620:intron 40.0%
!! TCTAGTTGGATGCTTTTTGG+GGG - chr1_2:41235248-41235267 Msa0070620:intron 40.0%
TAGCATTAGACATCACCAAC+AGG + chr1_2:41235278-41235297 None:intergenic 40.0%
CTAAACTTAGCCAAACAGCT+TGG - chr1_2:41235295-41235314 Msa0070620:intron 40.0%
AAGTAAAGGTCCAAGCTGTT+TGG + chr1_2:41235308-41235327 None:intergenic 40.0%
CCTAGCACAACCTTCTTTAT+GGG + chr1_2:41235391-41235410 None:intergenic 40.0%
ACCTAGCACAACCTTCTTTA+TGG + chr1_2:41235392-41235411 None:intergenic 40.0%
AGTGTTGTCAAATATCGGCA+TGG - chr1_2:41235448-41235467 Msa0070620:intron 40.0%
! GTGTTATTGATTGCAGATGG+TGG + chr1_2:41235597-41235616 None:intergenic 40.0%
! TTGCATTAATGGATGCGAGA+AGG - chr1_2:41235889-41235908 Msa0070620:CDS 40.0%
! TGCATTAATGGATGCGAGAA+GGG - chr1_2:41235890-41235909 Msa0070620:CDS 40.0%
ATTCCGGTAAAATGCTCACT+TGG - chr1_2:41235939-41235958 Msa0070620:CDS 40.0%
! AAGCCAAGTGAGCATTTTAC+CGG + chr1_2:41235945-41235964 None:intergenic 40.0%
TAAGATGCACCAAACACTAC+TGG - chr1_2:41236049-41236068 Msa0070620:intron 40.0%
!! TCAATTAGAGTATCGCCTCA+TGG - chr1_2:41236115-41236134 Msa0070620:intron 40.0%
AACCAACTTAATGAGGTCAG+AGG + chr1_2:41236261-41236280 None:intergenic 40.0%
AATCCCAGTTCTGCTTAATC+AGG - chr1_2:41236283-41236302 Msa0070620:intron 40.0%
TCTCCTGATTAAGCAGAACT+GGG + chr1_2:41236289-41236308 None:intergenic 40.0%
ATCTCCTGATTAAGCAGAAC+TGG + chr1_2:41236290-41236309 None:intergenic 40.0%
TGTTGTCGGAATCAGAGTTT+AGG - chr1_2:41236384-41236403 Msa0070620:intron 40.0%
! CAATGAGTTGGATCCAAACA+TGG + chr1_2:41236539-41236558 None:intergenic 40.0%
GGAACTTGTGTGTCCAATAT+AGG - chr1_2:41236902-41236921 Msa0070620:five_prime_UTR 40.0%
CCAAAATCTGTAAGGACAGT+TGG + chr1_2:41237051-41237070 None:intergenic 40.0%
! CCAACTGTCCTTACAGATTT+TGG - chr1_2:41237048-41237067 Msa0070620:intron 40.0%
!!! GGGATTAAATTTTTTGGGCG+AGG - chr1_2:41237168-41237187 Msa0070620:intron 40.0%
TAAATAATGCCAGGGGAAGA+GGG - chr1_2:41237367-41237386 Msa0070620:intron 40.0%
ATTCAAGATACCACTGGAAG+TGG - chr1_2:41237839-41237858 Msa0070620:intron 40.0%
AGAAACTACAGAATCAGGTG+CGG + chr1_2:41237907-41237926 None:intergenic 40.0%
!! GCTCTAGAAACTACAGAATC+AGG + chr1_2:41237912-41237931 None:intergenic 40.0%
! TCCCTAATGCTGTTTAAACC+GGG - chr1_2:41238067-41238086 Msa0070620:five_prime_UTR 40.0%
ATGGCATAACAAAACACTGC+TGG + chr1_2:41238288-41238307 None:intergenic 40.0%
GTGGGAAGGTTATCATCTTT+AGG - chr1_2:41238354-41238373 Msa0070620:five_prime_UTR 40.0%
TATTCTTGACCTGGTAGATG+TGG - chr1_2:41238402-41238421 Msa0070620:five_prime_UTR 40.0%
AAAAAGCTACCACATCTACC+AGG + chr1_2:41238414-41238433 None:intergenic 40.0%
TCTTCTGTATGTGATGTCGG+GGG + chr1_2:41232485-41232504 None:intergenic 45.0%
!! ATCAAAGTTGATGAGGCCGA+GGG - chr1_2:41232525-41232544 Msa0070620:three_prime_UTR 45.0%
AAATGTCTCAGTCTCACCCT+CGG + chr1_2:41232544-41232563 None:intergenic 45.0%
GCTATTGCTTCTGGTAAAGG+CGG - chr1_2:41232709-41232728 Msa0070620:three_prime_UTR 45.0%
ACAAAGCCTGAAGTCACTCA+AGG - chr1_2:41233837-41233856 Msa0070620:intron 45.0%
GTACAGACACAATATGGGCA+TGG - chr1_2:41233892-41233911 Msa0070620:intron 45.0%
!!! TGTCGGTTTTGTAGGAGTGT+TGG - chr1_2:41234065-41234084 Msa0070620:intron 45.0%
!! TGTAGGAGTGTTGGAAACTC+TGG - chr1_2:41234074-41234093 Msa0070620:intron 45.0%
GCATGAACTGCAATGGAAGA+TGG + chr1_2:41234730-41234749 None:intergenic 45.0%
ACAGCTACATGCATACCATG+GGG + chr1_2:41234872-41234891 None:intergenic 45.0%
GCTCTTGAGAAAATGACGAG+GGG - chr1_2:41235098-41235117 Msa0070620:intron 45.0%
AAATGACGAGGGGAGTTAAC+TGG - chr1_2:41235108-41235127 Msa0070620:intron 45.0%
AATGACGAGGGGAGTTAACT+GGG - chr1_2:41235109-41235128 Msa0070620:intron 45.0%
CCCATAAAGAAGGTTGTGCT+AGG - chr1_2:41235388-41235407 Msa0070620:intron 45.0%
GTTGTCAAATATCGGCATGG+CGG - chr1_2:41235451-41235470 Msa0070620:intron 45.0%
TCTACCACCACAATCTGTCA+TGG + chr1_2:41235479-41235498 None:intergenic 45.0%
! ACCACCATGGCCAATTTTGA+AGG - chr1_2:41235509-41235528 Msa0070620:intron 45.0%
TCCTTCAAAATTGGCCATGG+TGG + chr1_2:41235513-41235532 None:intergenic 45.0%
CCATCCTTCAAAATTGGCCA+TGG + chr1_2:41235516-41235535 None:intergenic 45.0%
!! CCATGGCCAATTTTGAAGGA+TGG - chr1_2:41235513-41235532 Msa0070620:intron 45.0%
ACGACGCCATCCTTCAAAAT+TGG + chr1_2:41235522-41235541 None:intergenic 45.0%
!! TTGATTGCAGATGGTGGACA+TGG + chr1_2:41235591-41235610 None:intergenic 45.0%
GTCATGGCTTCTTCTATGGT+AGG - chr1_2:41235837-41235856 Msa0070620:intron 45.0%
! GCATTAATGGATGCGAGAAG+GGG - chr1_2:41235891-41235910 Msa0070620:CDS 45.0%
TGCCTCTGACCTCATTAAGT+TGG - chr1_2:41236256-41236275 Msa0070620:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:41236469-41236488 Msa0070620:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:41236470-41236489 Msa0070620:intron 45.0%
! AGTTCCACAGCATTTGAGAC+CGG + chr1_2:41236647-41236666 None:intergenic 45.0%
ACACCTGGTCTCAAATGTTG+TGG - chr1_2:41236813-41236832 Msa0070620:intron 45.0%
! GTTCCACAACATTTGAGACC+AGG + chr1_2:41236819-41236838 None:intergenic 45.0%
GGTCTCAAATGTTGTGGAAC+TGG - chr1_2:41236819-41236838 Msa0070620:intron 45.0%
TATGAAGGTTCGCCACAATG+TGG + chr1_2:41237106-41237125 None:intergenic 45.0%
TCATAGCACAGCCACTGAAA+TGG - chr1_2:41237147-41237166 Msa0070620:intron 45.0%
CATAGCACAGCCACTGAAAT+GGG - chr1_2:41237148-41237167 Msa0070620:intron 45.0%
CTAAATAATGCCAGGGGAAG+AGG - chr1_2:41237366-41237385 Msa0070620:intron 45.0%
!! TTCTCGTTTTATTGGCCTGG+TGG - chr1_2:41237562-41237581 Msa0070620:intron 45.0%
AACAGCACAACCTCTATTCC+TGG - chr1_2:41237756-41237775 Msa0070620:intron 45.0%
ATCAGGGAAGCTTGTGATCA+AGG - chr1_2:41237864-41237883 Msa0070620:intron 45.0%
TCAGGGAAGCTTGTGATCAA+GGG - chr1_2:41237865-41237884 Msa0070620:intron 45.0%
CCCCGGTTTAAACAGCATTA+GGG + chr1_2:41238071-41238090 None:intergenic 45.0%
! CCCTAATGCTGTTTAAACCG+GGG - chr1_2:41238068-41238087 Msa0070620:five_prime_UTR 45.0%
ACCCCGGTTTAAACAGCATT+AGG + chr1_2:41238072-41238091 None:intergenic 45.0%
TGGTTGTGTTGGATGCATTG+TGG - chr1_2:41238335-41238354 Msa0070620:five_prime_UTR 45.0%
GGTTGTGTTGGATGCATTGT+GGG - chr1_2:41238336-41238355 Msa0070620:five_prime_UTR 45.0%
!! CATCAAAGTTGATGAGGCCG+AGG - chr1_2:41232524-41232543 Msa0070620:three_prime_UTR 50.0%
! GCGAAGCATCTTCGCATTGA+TGG - chr1_2:41232670-41232689 Msa0070620:three_prime_UTR 50.0%
GTCGGCAAATCAACAACTGC+TGG - chr1_2:41232733-41232752 Msa0070620:three_prime_UTR 50.0%
!! TAAGAGTGTCGGACATCGAC+AGG + chr1_2:41233979-41233998 None:intergenic 50.0%
ATGACGAGGGGAGTTAACTG+GGG - chr1_2:41235110-41235129 Msa0070620:intron 50.0%
CTGGTGATAGATATGCCTCC+TGG - chr1_2:41235146-41235165 Msa0070620:intron 50.0%
ATAGATATGCCTCCTGGCAC+TGG - chr1_2:41235152-41235171 Msa0070620:intron 50.0%
ATTTGGACATCACCAGTGCC+AGG + chr1_2:41235167-41235186 None:intergenic 50.0%
TTTGAAGGATGGCGTCGTCA+TGG - chr1_2:41235524-41235543 Msa0070620:intron 50.0%
!! ATTGCAGATGGTGGACATGG+TGG + chr1_2:41235588-41235607 None:intergenic 50.0%
!! AGAGTATCGCCTCATGGTCA+TGG - chr1_2:41236121-41236140 Msa0070620:intron 50.0%
! GAGTATCGCCTCATGGTCAT+GGG - chr1_2:41236122-41236141 Msa0070620:intron 50.0%
AGTATCGCCTCATGGTCATG+GGG - chr1_2:41236123-41236142 Msa0070620:intron 50.0%
GATGAATCCCCATGACCATG+AGG + chr1_2:41236133-41236152 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_2:41236471-41236490 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_2:41236468-41236487 Msa0070620:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_2:41236474-41236493 Msa0070620:intron 50.0%
! GTTCCACAGCATTTGAGACC+GGG + chr1_2:41236646-41236665 None:intergenic 50.0%
GGTCTCAAATGCTGTGGAAC+TGG - chr1_2:41236646-41236665 Msa0070620:intron 50.0%
AACTGCTTGTGTCTACCACC+AGG + chr1_2:41237580-41237599 None:intergenic 50.0%
TACCACTGGAAGTGGAGATC+AGG - chr1_2:41237847-41237866 Msa0070620:intron 50.0%
ACCACTGGAAGTGGAGATCA+GGG - chr1_2:41237848-41237867 Msa0070620:intron 50.0%
! CAGGGACTGGAGTGTTATGA+CGG + chr1_2:41238022-41238041 None:intergenic 50.0%
TCATAACACTCCAGTCCCTG+AGG - chr1_2:41238022-41238041 Msa0070620:five_prime_UTR 50.0%
! CTCTTTTCTTCCTCAGGGAC+TGG + chr1_2:41238035-41238054 None:intergenic 50.0%
CAGTCCCTGAGGAAGAAAAG+AGG - chr1_2:41238033-41238052 Msa0070620:five_prime_UTR 50.0%
! CGGTCCTCTTTTCTTCCTCA+GGG + chr1_2:41238040-41238059 None:intergenic 50.0%
! TCGGTCCTCTTTTCTTCCTC+AGG + chr1_2:41238041-41238060 None:intergenic 50.0%
ACAGCATTAGGGAACCAGCT+CGG + chr1_2:41238060-41238079 None:intergenic 50.0%
GTGGTTCTTCGACGTCACAT+AGG - chr1_2:41238203-41238222 Msa0070620:intron 50.0%
GTGTTGGATGCATTGTGGGA+AGG - chr1_2:41238340-41238359 Msa0070620:five_prime_UTR 50.0%
GTGATGTCGGGGGAAAATCG+TGG + chr1_2:41232475-41232494 None:intergenic 55.0%
GCTTCTGGTAAAGGCGGTGT+CGG - chr1_2:41232715-41232734 Msa0070620:three_prime_UTR 55.0%
TGTCGGACATCGACAGGTGT+TGG + chr1_2:41233973-41233992 None:intergenic 55.0%
! TCGGGGCATTCTTCTCCACA+AGG + chr1_2:41234836-41234855 None:intergenic 55.0%
AGAAGAATGCCCCGATCGTC+TGG - chr1_2:41234841-41234860 Msa0070620:CDS 55.0%
TGACGAGGGGAGTTAACTGG+GGG - chr1_2:41235111-41235130 Msa0070620:intron 55.0%
CTGGGGGAACCTTGACATTC+TGG - chr1_2:41235127-41235146 Msa0070620:intron 55.0%
!! CTTTTTGGGGGATCGCCTGT+TGG - chr1_2:41235260-41235279 Msa0070620:intron 55.0%
! GGTGCCATGACAGATTGTGG+TGG - chr1_2:41235472-41235491 Msa0070620:intron 55.0%
! GGCGTCGTCATGGCGTTTTA+TGG - chr1_2:41235534-41235553 Msa0070620:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_2:41236476-41236495 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_2:41236482-41236501 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_2:41236483-41236502 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_2:41236482-41236501 Msa0070620:intron 55.0%
ACACCCGGTCTCAAATGCTG+TGG - chr1_2:41236640-41236659 Msa0070620:intron 55.0%
GACATTGTACCCTCTTCCCC+TGG + chr1_2:41237379-41237398 None:intergenic 55.0%
TCCCTGATCTCCACTTCCAG+TGG + chr1_2:41237852-41237871 None:intergenic 55.0%
!! TCAAGGGCACCCGATAGTGT+TGG - chr1_2:41237881-41237900 Msa0070620:intron 55.0%
TCAGGTGCGGCCAACACTAT+CGG + chr1_2:41237894-41237913 None:intergenic 55.0%
GGAAGAAAAGAGGACCGAGC+TGG - chr1_2:41238043-41238062 Msa0070620:five_prime_UTR 55.0%
AATGCCCCGATCGTCTGGAG+AGG - chr1_2:41234846-41234865 Msa0070620:CDS 60.0%
ATGGGGCCTCTCCAGACGAT+CGG + chr1_2:41234855-41234874 None:intergenic 60.0%
TGGACATCACCAGTGCCAGG+AGG + chr1_2:41235164-41235183 None:intergenic 60.0%
!! GGCGGTGCCATGACAGATTG+TGG - chr1_2:41235469-41235488 Msa0070620:intron 60.0%
CAGGTGCGGCCAACACTATC+GGG + chr1_2:41237893-41237912 None:intergenic 60.0%
TGGGGCCTCTCCAGACGATC+GGG + chr1_2:41234854-41234873 None:intergenic 65.0%
GATCGTCTGGAGAGGCCCCA+TGG - chr1_2:41234854-41234873 Msa0070620:CDS 65.0%
GGGGCCTCTCCAGACGATCG+GGG + chr1_2:41234853-41234872 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 41232312 41238446 41232312 ID=Msa0070620;Name=Msa0070620
chr1_2 mRNA 41232312 41238446 41232312 ID=Msa0070620-mRNA-1;Parent=Msa0070620;Name=Msa0070620-mRNA-1;_AED=0.12;_eAED=0.12;_QI=490|1|1|1|0.62|0.66|9|442|195
chr1_2 exon 41232312 41232912 41232312 ID=Msa0070620-mRNA-1:exon:12580;Parent=Msa0070620-mRNA-1
chr1_2 exon 41233569 41233694 41233569 ID=Msa0070620-mRNA-1:exon:12579;Parent=Msa0070620-mRNA-1
chr1_2 exon 41234814 41234899 41234814 ID=Msa0070620-mRNA-1:exon:12578;Parent=Msa0070620-mRNA-1
chr1_2 exon 41235543 41235669 41235543 ID=Msa0070620-mRNA-1:exon:12577;Parent=Msa0070620-mRNA-1
chr1_2 exon 41235883 41236015 41235883 ID=Msa0070620-mRNA-1:exon:12576;Parent=Msa0070620-mRNA-1
chr1_2 exon 41236900 41237022 41236900 ID=Msa0070620-mRNA-1:exon:12575;Parent=Msa0070620-mRNA-1
chr1_2 exon 41238004 41238112 41238004 ID=Msa0070620-mRNA-1:exon:12574;Parent=Msa0070620-mRNA-1
chr1_2 exon 41238212 41238266 41238212 ID=Msa0070620-mRNA-1:exon:12573;Parent=Msa0070620-mRNA-1
chr1_2 exon 41238287 41238446 41238287 ID=Msa0070620-mRNA-1:exon:12572;Parent=Msa0070620-mRNA-1
chr1_2 five_prime_UTR 41238287 41238446 41238287 ID=Msa0070620-mRNA-1:five_prime_utr;Parent=Msa0070620-mRNA-1
chr1_2 five_prime_UTR 41238212 41238266 41238212 ID=Msa0070620-mRNA-1:five_prime_utr;Parent=Msa0070620-mRNA-1
chr1_2 five_prime_UTR 41238004 41238112 41238004 ID=Msa0070620-mRNA-1:five_prime_utr;Parent=Msa0070620-mRNA-1
chr1_2 five_prime_UTR 41236900 41237022 41236900 ID=Msa0070620-mRNA-1:five_prime_utr;Parent=Msa0070620-mRNA-1
chr1_2 five_prime_UTR 41235973 41236015 41235973 ID=Msa0070620-mRNA-1:five_prime_utr;Parent=Msa0070620-mRNA-1
chr1_2 CDS 41235883 41235972 41235883 ID=Msa0070620-mRNA-1:cds;Parent=Msa0070620-mRNA-1
chr1_2 CDS 41235543 41235669 41235543 ID=Msa0070620-mRNA-1:cds;Parent=Msa0070620-mRNA-1
chr1_2 CDS 41234814 41234899 41234814 ID=Msa0070620-mRNA-1:cds;Parent=Msa0070620-mRNA-1
chr1_2 CDS 41233569 41233694 41233569 ID=Msa0070620-mRNA-1:cds;Parent=Msa0070620-mRNA-1
chr1_2 CDS 41232754 41232912 41232754 ID=Msa0070620-mRNA-1:cds;Parent=Msa0070620-mRNA-1
chr1_2 three_prime_UTR 41232312 41232753 41232312 ID=Msa0070620-mRNA-1:three_prime_utr;Parent=Msa0070620-mRNA-1
Gene Sequence

>Msa0070620

ATGATTCCCATTGATAGTTACGGGATCAAGTGTATGTCAATAGGGTTCCTTGTGGAGAAGAATGCCCCGATCGTCTGGAGAGGCCCCATGGTATCAAAAGCTCTTGAGAAAATGACGAGGGGAGTTAACTGGGGGAACCTTGACATTCTGGTGATAGATATGCCTCCTGGCACTGGTGATGTCCAAATATCTATGTCTCAGAATCTGCAACTATCAGGTGCGCTGATTGTTTCAACTCCTCAAGATGTTGCATTAATGGATGCGAGAAGGGGAGTACAAATGTTCAATAAAGTTGATATTCCGATTTTGGGAATCATAGAGAATATGAGCTGCTTTAAATGTCCACATTGTGGCGAACCTTCATATATATTTGGTAAAGGAGGGGCTCATAGCACAGCCACTGAAATGGGATTAAATTTTTTGGGCGAGATACCACTGGAAGTGGAGATCAGGGAAGCTTGTGATCAAGGGCACCCGATAGTGTTGGCCGCACCTGATTCTGTAGTTTCTAGAGCATATGGAAATATAGCTGAAAAGGTTGTTCAGAAACTCAAGGAGAAACAATTTCAACCAGAGATTTTACTATGA
Protein sequence

>Msa0070620

MIPIDSYGIKCMSIGFLVEKNAPIVWRGPMVSKALEKMTRGVNWGNLDILVIDMPPGTGDVQISMSQNLQLSGALIVSTPQDVALMDARRGVQMFNKVDIPILGIIENMSCFKCPHCGEPSYIFGKGGAHSTATEMGLNFLGEIPLEVEIREACDQGHPIVLAAPDSVVSRAYGNIAEKVVQKLKEKQFQPEILL*