AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123640 MtrunA17_Chr1g0184451 98.974 195 2 0 1 195 85 279 7.28e-144 401
Msa0123640 MtrunA17_Chr6g0485031 37.306 193 107 4 1 183 241 429 4.01e-36 132
Msa0123640 MtrunA17_Chr1g0153571 31.481 216 102 6 12 186 133 343 1.47e-20 87.4
Msa0123640 MtrunA17_Chr1g0151421 31.481 216 102 6 12 186 134 344 6.25e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123640 AT4G19540.1 66.146 192 65 0 1 192 106 297 3.44e-97 285
Msa0123640 AT3G24430.1 38.251 183 109 2 1 183 240 418 3.11e-38 138
Msa0123640 AT5G50960.1 31.507 219 105 5 5 181 128 343 4.07e-27 105

Find 115 sgRNAs with CRISPR-Local

Find 681 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAAGATGTTGCATTAA+TGG 0.159802 1_3:+50964673 Msa0123640:CDS
GGCGAACCTTCATATATATT+TGG 0.186512 1_3:+50965910 Msa0123640:CDS
TTACGCGAACAGAAAATTAT+TGG 0.220068 1_3:-50961202 None:intergenic
ATGCCATTCCTTAAGTTATA+AGG 0.255044 1_3:+50967096 Msa0123640:three_prime_UTR
GATTCTGAGACATAGATATT+TGG 0.283473 1_3:-50961634 None:intergenic
TTCCCTTATGCTGTTTAAAC+CGG 0.310944 1_3:+50966861 Msa0123640:three_prime_UTR
AAATGACGAGGGGAGTTAAC+TGG 0.330730 1_3:+50961561 Msa0123640:CDS
AATTGATTCAACACATAGAT+TGG 0.347912 1_3:-50958016 None:intergenic
GTTCAATAAAGTTGATATTC+CGG 0.350862 1_3:+50964718 Msa0123640:CDS
GATACCATAGCTATTGCTTC+TGG 0.358686 1_3:+50958298 Msa0123640:five_prime_UTR
GCGAAGCATCTTCGCATTGA+TGG 0.362197 1_3:+50958268 Msa0123640:five_prime_UTR
GGGATCAAGTGTATGTCAAT+AGG 0.367929 1_3:+50961260 Msa0123640:CDS
TCTCAGAATCTGCAACTATC+AGG 0.373762 1_3:+50961647 Msa0123640:CDS
TCTGTAGTTTCTAGAGCATA+TGG 0.381576 1_3:+50966710 Msa0123640:CDS
TGGGGCCTCTCCAGACGATC+GGG 0.385203 1_3:-50961304 None:intergenic
TGATTCCCATTGATAGTTAC+GGG 0.385809 1_3:+50961240 Msa0123640:CDS
AGAAGAATGCCCCGATCGTC+TGG 0.396775 1_3:+50961294 Msa0123640:CDS
GTGTCGATGTTCATCATGAT+AGG 0.396838 1_3:-50960270 None:intergenic
TACCACTGGAAGTGGAGATC+AGG 0.399284 1_3:+50966642 Msa0123640:CDS
GATATACCTTGAGTGACTTC+AGG 0.399695 1_3:-50960297 None:intergenic
GCTCTAGAAACTACAGAATC+AGG 0.405926 1_3:-50966704 None:intergenic
ACCCCGGTTTAAACAGCATA+AGG 0.410359 1_3:-50966864 None:intergenic
GTAAGTTCCAATTGAAGGTT+GGG 0.411148 1_3:+50960214 Msa0123640:five_prime_UTR
GGTTGTGTTGGATGCATTGT+GGG 0.419268 1_3:+50967131 Msa0123640:three_prime_UTR
TGCAAGTAAGTTCCAATTGA+AGG 0.420623 1_3:+50960209 Msa0123640:five_prime_UTR
CAAGTAACCCAACCTTCAAT+TGG 0.422756 1_3:-50960221 None:intergenic
TCATAGCACAGCCACTGAAA+TGG 0.425764 1_3:+50965945 Msa0123640:CDS
ATGATTCCCATTGATAGTTA+CGG 0.432104 1_3:+50961239 Msa0123640:CDS
TTAATTTAACTTAAATATTG+AGG 0.432443 1_3:+50967039 Msa0123640:three_prime_UTR
GTTCATCATGATAGGAATGT+TGG 0.432777 1_3:-50960262 None:intergenic
CTTGATCCCGTAACTATCAA+TGG 0.438569 1_3:-50961246 None:intergenic
CATAGCACAGCCACTGAAAT+GGG 0.443169 1_3:+50965946 Msa0123640:CDS
ATTGATTCAACACATAGATT+GGG 0.450290 1_3:-50958015 None:intergenic
ATCAGGGAAGCTTGTGATCA+AGG 0.450807 1_3:+50966659 Msa0123640:CDS
GGATCAAGTGTATGTCAATA+GGG 0.458082 1_3:+50961261 Msa0123640:CDS
TCCCTTATGCTGTTTAAACC+GGG 0.460863 1_3:+50966862 Msa0123640:three_prime_UTR
TTACTTGATGCTGATGTGTA+TGG 0.464843 1_3:+50960237 Msa0123640:five_prime_UTR
ATATGGAAATATAGCTGAAA+AGG 0.465410 1_3:+50966727 Msa0123640:CDS
ATAGCTATTGCTTCTGGTAA+AGG 0.466248 1_3:+50958304 Msa0123640:five_prime_UTR
ACATTTCATAGTAAAATCTC+TGG 0.468648 1_3:-50966782 None:intergenic
TCAGGTGCGGCCAACACTAT+CGG 0.472607 1_3:-50966686 None:intergenic
TTCATCATGATAGGAATGTT+GGG 0.479590 1_3:-50960261 None:intergenic
CCTTTACCAAATATATATGA+AGG 0.479977 1_3:-50965916 None:intergenic
CAGGTGCGGCCAACACTATC+GGG 0.485473 1_3:-50966685 None:intergenic
TGCATTAATGGATGCGAGAA+GGG 0.486805 1_3:+50964685 Msa0123640:CDS
GCACTTTGTTTAGTTTGAGT+TGG 0.486889 1_3:-50957945 None:intergenic
AATGACGAGGGGAGTTAACT+GGG 0.488841 1_3:+50961562 Msa0123640:CDS
ATAGATATGCCTCCTGGCAC+TGG 0.493130 1_3:+50961605 Msa0123640:CDS
TGGTTGTGTTGGATGCATTG+TGG 0.497597 1_3:+50967130 Msa0123640:three_prime_UTR
AGTAAGTTCCAATTGAAGGT+TGG 0.499750 1_3:+50960213 Msa0123640:five_prime_UTR
ATGGGGCCTCTCCAGACGAT+CGG 0.500251 1_3:-50961305 None:intergenic
ATTCAAGATACCACTGGAAG+TGG 0.501090 1_3:+50966634 Msa0123640:intron
CCTTCATATATATTTGGTAA+AGG 0.504163 1_3:+50965916 Msa0123640:CDS
CATATATATTTGGTAAAGGA+GGG 0.512882 1_3:+50965920 Msa0123640:CDS
CTCAGGGGATCTTCTAATCG+TGG 0.513747 1_3:-50958089 None:intergenic
CATCAAAGTTGATGAGGCCG+AGG 0.513994 1_3:+50958122 Msa0123640:five_prime_UTR
TTGATCCCGTAACTATCAAT+GGG 0.516228 1_3:-50961245 None:intergenic
TCCATTAATGCAACATCTTG+AGG 0.518038 1_3:-50964674 None:intergenic
TTTGTTTAATAAGCAGTTGG+TGG 0.522953 1_3:+50966979 Msa0123640:three_prime_UTR
TCATATATATTTGGTAAAGG+AGG 0.524591 1_3:+50965919 Msa0123640:CDS
GTGTTGGATGCATTGTGGGA+AGG 0.525014 1_3:+50967135 Msa0123640:three_prime_UTR
CTGGTGATAGATATGCCTCC+TGG 0.527506 1_3:+50961599 Msa0123640:CDS
ATGGCATAACAAAACACTGC+TGG 0.543288 1_3:-50967080 None:intergenic
GTCGGCAAATCAACAACTGC+TGG 0.546887 1_3:+50958331 Msa0123640:five_prime_UTR
TACAATTACATTCAACAGCA+AGG 0.547823 1_3:-50957991 None:intergenic
AAAATTTAATCCCATTTCAG+TGG 0.548951 1_3:-50965956 None:intergenic
TCAGGGAAGCTTGTGATCAA+GGG 0.553420 1_3:+50966660 Msa0123640:CDS
CCCCGGTTTAAACAGCATAA+GGG 0.553597 1_3:-50966863 None:intergenic
GATCGTCTGGAGAGGCCCCA+TGG 0.554959 1_3:+50961307 Msa0123640:CDS
ATTTGGACATCACCAGTGCC+AGG 0.555591 1_3:-50961617 None:intergenic
GTGGTTCTTCGACGTCACAT+AGG 0.557029 1_3:+50966998 Msa0123640:three_prime_UTR
GAACCTTATAACTTAAGGAA+TGG 0.558375 1_3:-50967099 None:intergenic
TTTCATTCTGATCAGTGGCT+AGG 0.565317 1_3:+50958229 Msa0123640:intron
GCTTCTGGTAAAGGCGGTGT+CGG 0.565622 1_3:+50958313 Msa0123640:five_prime_UTR
ACCACTGGAAGTGGAGATCA+GGG 0.566063 1_3:+50966643 Msa0123640:CDS
TGCTTTAAATGTCCACATTG+TGG 0.569694 1_3:+50965889 Msa0123640:CDS
TATTCTTGACCTGGTAGATG+TGG 0.570381 1_3:+50967197 Msa0123640:three_prime_UTR
TTATCGATTCAAGATACCAC+TGG 0.571247 1_3:+50966628 Msa0123640:intron
TTGCATTAATGGATGCGAGA+AGG 0.572149 1_3:+50964684 Msa0123640:CDS
TGTAGTATAAGATAAGATGC+AGG 0.574515 1_3:+50966914 Msa0123640:three_prime_UTR
GGAAGAAAAGAGGACCGAGC+TGG 0.574856 1_3:+50966838 Msa0123640:three_prime_UTR
ATATATATTTGGTAAAGGAG+GGG 0.592261 1_3:+50965921 Msa0123640:CDS
TTTGATTTCGCGTCTTGTCG+CGG 0.593000 1_3:+50957892 Msa0123640:five_prime_UTR
CAGGGACTGGAGTGTTATGA+CGG 0.594469 1_3:-50966814 None:intergenic
GCATTAATGGATGCGAGAAG+GGG 0.600484 1_3:+50964686 Msa0123640:CDS
CCCTTATGCTGTTTAAACCG+GGG 0.602722 1_3:+50966863 Msa0123640:three_prime_UTR
TCCCTGATCTCCACTTCCAG+TGG 0.604175 1_3:-50966644 None:intergenic
ATTTAAAAGTAAGCAAACCC+CGG 0.612515 1_3:-50966880 None:intergenic
ACAGCATAAGGGAACCAGCT+CGG 0.613099 1_3:-50966852 None:intergenic
AAAGAGATTTATTCTTGACC+TGG 0.613729 1_3:+50967188 Msa0123640:three_prime_UTR
TTACATTCAACAGCAAGGAA+TGG 0.615847 1_3:-50957986 None:intergenic
TTTACCAGAAGCAATAGCTA+TGG 0.617990 1_3:-50958302 None:intergenic
AAAGGTTGTTCAGAAACTCA+AGG 0.620310 1_3:+50966745 Msa0123640:CDS
CAGTCCCTGAGGAAGAAAAG+AGG 0.624588 1_3:+50966828 Msa0123640:three_prime_UTR
GGGGCCTCTCCAGACGATCG+GGG 0.629673 1_3:-50961303 None:intergenic
CATTCACATCAAAGTTGATG+AGG 0.635095 1_3:+50958116 Msa0123640:five_prime_UTR
TCAAGGGCACCCGATAGTGT+TGG 0.640121 1_3:+50966676 Msa0123640:CDS
AATGCCCCGATCGTCTGGAG+AGG 0.641120 1_3:+50961299 Msa0123640:CDS
AGCTCTTGAGAAAATGACGA+GGG 0.641120 1_3:+50961550 Msa0123640:CDS
TATCTATCACCAGAATGTCA+AGG 0.659018 1_3:-50961589 None:intergenic
ATCAAAGTTGATGAGGCCGA+GGG 0.661654 1_3:+50958123 Msa0123640:five_prime_UTR
ACAAATCTAAATCATACGTG+AGG 0.668985 1_3:-50966937 None:intergenic
GCTATTGCTTCTGGTAAAGG+CGG 0.674617 1_3:+50958307 Msa0123640:five_prime_UTR
ACAAAGCCTGAAGTCACTCA+AGG 0.675264 1_3:+50960291 Msa0123640:five_prime_UTR
TATGAAGGTTCGCCACAATG+TGG 0.675582 1_3:-50965901 None:intergenic
ATGACGAGGGGAGTTAACTG+GGG 0.676508 1_3:+50961563 Msa0123640:CDS
TCATAACACTCCAGTCCCTG+AGG 0.694999 1_3:+50966817 Msa0123640:three_prime_UTR
TCGGGGCATTCTTCTCCACA+AGG 0.698186 1_3:-50961286 None:intergenic
AGAAACTACAGAATCAGGTG+CGG 0.700617 1_3:-50966699 None:intergenic
AAGCTCTTGAGAAAATGACG+AGG 0.702011 1_3:+50961549 Msa0123640:CDS
GCTCTTGAGAAAATGACGAG+GGG 0.708702 1_3:+50961551 Msa0123640:CDS
TTCGTCGTCTAAGTGCGGCG+TGG 0.713118 1_3:+50957857 None:intergenic
TATGTCAATAGGGTTCCTTG+TGG 0.727496 1_3:+50961271 Msa0123640:CDS
TGACGAGGGGAGTTAACTGG+GGG 0.736165 1_3:+50961564 Msa0123640:CDS
TGGACATCACCAGTGCCAGG+AGG 0.736378 1_3:-50961614 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTTTTTTTTTTTTC+CGG + chr1_3:50959160-50959179 Msa0123640:intron 10.0%
!!! TTAATTTAACTTAAATATTG+AGG + chr1_3:50967039-50967058 Msa0123640:three_prime_UTR 10.0%
!!! TAAAAATATTGACTAAATAG+AGG + chr1_3:50959524-50959543 Msa0123640:intron 15.0%
!!! AATTATTAAGCTTTGTTTTA+TGG + chr1_3:50961145-50961164 Msa0123640:intron 15.0%
!! AATAGTTAATGAAAATGAAA+AGG - chr1_3:50961374-50961393 None:intergenic 15.0%
!!! TTTATTTGAATTTTTATTGC+TGG + chr1_3:50961509-50961528 Msa0123640:intron 15.0%
!! AAAACTAAAGTAAAAAGATA+AGG - chr1_3:50963410-50963429 None:intergenic 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG + chr1_3:50963409-50963428 Msa0123640:intron 15.0%
!!! ATTTGTTTTTACTTATTTCA+CGG + chr1_3:50965676-50965695 Msa0123640:intron 15.0%
!!! TGTCTTTCTTAATTAATTTT+GGG - chr1_3:50966222-50966241 None:intergenic 15.0%
!!! ATGTCTTTCTTAATTAATTT+TGG - chr1_3:50966223-50966242 None:intergenic 15.0%
!! AAATTAATTAAGAAAGACAT+AGG + chr1_3:50966223-50966242 Msa0123640:intron 15.0%
!! TATATTTCATTTAGAAGAAA+AGG - chr1_3:50966318-50966337 None:intergenic 15.0%
!!! CAAATTAGAAACAATTTTAG+AGG - chr1_3:50958520-50958539 None:intergenic 20.0%
!!! ATTGTTTCTAATTTGAAGTT+AGG + chr1_3:50958525-50958544 Msa0123640:intron 20.0%
!! TGACGAAAAAATATGTATTT+AGG + chr1_3:50958754-50958773 Msa0123640:intron 20.0%
!! GACGAAAAAATATGTATTTA+GGG + chr1_3:50958755-50958774 Msa0123640:intron 20.0%
!!! TTTAATTTATGTTGTTCTTG+TGG - chr1_3:50958940-50958959 None:intergenic 20.0%
!! AAACTTAAGGTAACAAAATA+TGG - chr1_3:50959226-50959245 None:intergenic 20.0%
!!! CGTAAATATTTTAACAATAG+TGG - chr1_3:50959253-50959272 None:intergenic 20.0%
!! ATTGTTAAAATATTTACGAG+AGG + chr1_3:50959255-50959274 Msa0123640:intron 20.0%
!!! TTTTTTTCAATTAAGATTGC+AGG + chr1_3:50959642-50959661 Msa0123640:intron 20.0%
!!! TTTTTTCAATTAAGATTGCA+GGG + chr1_3:50959643-50959662 Msa0123640:intron 20.0%
!! AATATTTCTCTATAATGTAC+TGG + chr1_3:50960324-50960343 Msa0123640:intron 20.0%
!! TCTCAAAAAAAAGTTAAAGT+GGG - chr1_3:50960597-50960616 None:intergenic 20.0%
!! TTCTCAAAAAAAAGTTAAAG+TGG - chr1_3:50960598-50960617 None:intergenic 20.0%
!! TAATCAGCAAATATTACATA+TGG - chr1_3:50960879-50960898 None:intergenic 20.0%
!!! TATTTGCTGATTATCATAAA+TGG + chr1_3:50960886-50960905 Msa0123640:intron 20.0%
!! TTAAAATCTAGACAAAGTAA+AGG - chr1_3:50961775-50961794 None:intergenic 20.0%
!! ACAAAAATAACCAATGAAAA+AGG - chr1_3:50964614-50964633 None:intergenic 20.0%
!! ATTTACAAAAACTCATAATC+AGG - chr1_3:50964775-50964794 None:intergenic 20.0%
!!! GATTATGAGTTTTTGTAAAT+TGG + chr1_3:50964775-50964794 Msa0123640:intron 20.0%
!! TTATTTCAGTTTATTGTTGT+CGG + chr1_3:50965165-50965184 Msa0123640:intron 20.0%
!! AATAAATATGTAAATACACC+TGG + chr1_3:50965593-50965612 Msa0123640:intron 20.0%
!!! TGCTTCTATTATATGTTTTA+AGG + chr1_3:50965652-50965671 Msa0123640:intron 20.0%
!!! TGAAATGGGATTAAATTTTT+TGG + chr1_3:50965960-50965979 Msa0123640:CDS 20.0%
!!! GAAATGGGATTAAATTTTTT+GGG + chr1_3:50965961-50965980 Msa0123640:CDS 20.0%
!! AATGAAAAGTTTAGCAATAT+CGG + chr1_3:50966103-50966122 Msa0123640:intron 20.0%
!! AAAAAAAACTAAATAATGCC+AGG + chr1_3:50966154-50966173 Msa0123640:intron 20.0%
!! AAAAAAACTAAATAATGCCA+GGG + chr1_3:50966155-50966174 Msa0123640:intron 20.0%
!! TAAAACGAGAAAATGATTAT+CGG - chr1_3:50966349-50966368 None:intergenic 20.0%
!!! TAATCATTTTCTCGTTTTAT+TGG + chr1_3:50966350-50966369 Msa0123640:intron 20.0%
!!! AATCATTTTCTCGTTTTATT+GGG + chr1_3:50966351-50966370 Msa0123640:intron 20.0%
!!! AATTTTGTTTAATAAGCAGT+TGG + chr1_3:50966976-50966995 Msa0123640:three_prime_UTR 20.0%
!! AAAAAGAACCTTATAACTTA+AGG - chr1_3:50967107-50967126 None:intergenic 20.0%
!! ATTGATTCAACACATAGATT+GGG - chr1_3:50958018-50958037 None:intergenic 25.0%
!! AATTGATTCAACACATAGAT+TGG - chr1_3:50958019-50958038 None:intergenic 25.0%
!!! TTTTGATTAGGTTGAATTTG+AGG - chr1_3:50958061-50958080 None:intergenic 25.0%
! AACATAGGCTTATATCTTAT+AGG - chr1_3:50958460-50958479 None:intergenic 25.0%
!! TATACGTGATTTTTACACTT+AGG + chr1_3:50958566-50958585 Msa0123640:intron 25.0%
!! CTTTGTTTGGTAAAGAATAT+CGG + chr1_3:50958589-50958608 Msa0123640:intron 25.0%
! GTAGTGTTTGATAAAATTAG+CGG + chr1_3:50958707-50958726 Msa0123640:intron 25.0%
! ACATCTTTCTAACTTACTAA+AGG + chr1_3:50959002-50959021 Msa0123640:intron 25.0%
! CAATAGATCTGGATATAAAA+TGG - chr1_3:50959050-50959069 None:intergenic 25.0%
! TAGAAAAAATTAACCTTGTC+AGG + chr1_3:50959131-50959150 Msa0123640:intron 25.0%
! TAAGGTAACAAAATATGGTT+TGG - chr1_3:50959221-50959240 None:intergenic 25.0%
! CAATAGTGGTATTAAACTTA+AGG - chr1_3:50959239-50959258 None:intergenic 25.0%
! AGAGGAGAATTAAAAAAGAA+TGG + chr1_3:50959273-50959292 Msa0123640:intron 25.0%
! TAGTGAGAACATATAAGATA+AGG + chr1_3:50959457-50959476 Msa0123640:intron 25.0%
!! TTTGCAGACATATTAATTTG+AGG + chr1_3:50959484-50959503 Msa0123640:intron 25.0%
! AGTATGGACCTTAAAAATAA+GGG - chr1_3:50959592-50959611 None:intergenic 25.0%
! TAGTATGGACCTTAAAAATA+AGG - chr1_3:50959593-50959612 None:intergenic 25.0%
!!! TTATTTTTAAGGTCCATACT+AGG + chr1_3:50959592-50959611 Msa0123640:intron 25.0%
!!! TATTTTTAAGGTCCATACTA+GGG + chr1_3:50959593-50959612 Msa0123640:intron 25.0%
!!! TTTTTCAATTAAGATTGCAG+GGG + chr1_3:50959644-50959663 Msa0123640:intron 25.0%
! GGGTTGAACAATAAATTTAA+GGG - chr1_3:50959843-50959862 None:intergenic 25.0%
!! TGGGTTGAACAATAAATTTA+AGG - chr1_3:50959844-50959863 None:intergenic 25.0%
!! ATTGTTTTCATAAGTTCTCT+CGG + chr1_3:50960045-50960064 Msa0123640:intron 25.0%
! ATATCTATCATCGACAATTT+AGG - chr1_3:50960565-50960584 None:intergenic 25.0%
!! AGTGATAATGTTAAAGCAAT+AGG + chr1_3:50960737-50960756 Msa0123640:intron 25.0%
!! TTTTAAATCATCCACTTCAT+TGG + chr1_3:50960926-50960945 Msa0123640:intron 25.0%
!! TCTCAACACATGATATTTTT+AGG + chr1_3:50961009-50961028 Msa0123640:intron 25.0%
! CAAATAAAAAACAGTAGAAG+TGG - chr1_3:50961497-50961516 None:intergenic 25.0%
!! TTTTATTGCTGGATTATCAT+AGG + chr1_3:50961520-50961539 Msa0123640:intron 25.0%
! TGGGATTTATTGAATATATC+AGG - chr1_3:50961825-50961844 None:intergenic 25.0%
! TTCAATAAATCCCATAAAGA+AGG + chr1_3:50961831-50961850 Msa0123640:intron 25.0%
!!! TTGAAAGTGTTGTCAAATAT+CGG + chr1_3:50961896-50961915 Msa0123640:intron 25.0%
!! AGATTGATTTCTTTCTCATT+AGG + chr1_3:50962012-50962031 Msa0123640:intron 25.0%
!!! AGAGAGATTGTTTTAAAGAT+TGG + chr1_3:50962396-50962415 Msa0123640:intron 25.0%
! CTTATATTTATCCCAAGTTT+CGG - chr1_3:50962438-50962457 None:intergenic 25.0%
! AAAGAGATATTAAGGATAGA+TGG + chr1_3:50962651-50962670 Msa0123640:intron 25.0%
! TTCCACAACTTATTTAATGA+AGG + chr1_3:50962683-50962702 Msa0123640:intron 25.0%
! ATCCTTCATTAAATAAGTTG+TGG - chr1_3:50962688-50962707 None:intergenic 25.0%
! GTTCTTAAAGATTGGAATTA+AGG - chr1_3:50962963-50962982 None:intergenic 25.0%
!! AATTCCAATCTTTAAGAACA+AGG + chr1_3:50962964-50962983 Msa0123640:intron 25.0%
!! ATTCCAATCTTTAAGAACAA+GGG + chr1_3:50962965-50962984 Msa0123640:intron 25.0%
!!! ACACTTAGTTTTCATTGATT+TGG + chr1_3:50963196-50963215 Msa0123640:intron 25.0%
! TATTGTTATGGGAAAATCTA+CGG - chr1_3:50963360-50963379 None:intergenic 25.0%
! AGTAAAAAGATAAGGACTTA+GGG - chr1_3:50963402-50963421 None:intergenic 25.0%
! AAGTAAAAAGATAAGGACTT+AGG - chr1_3:50963403-50963422 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_3:50964011-50964030 Msa0123640:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr1_3:50964146-50964165 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_3:50964153-50964172 Msa0123640:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_3:50964193-50964212 None:intergenic 25.0%
! TCAAAGGACAATTAGTAATT+TGG - chr1_3:50964557-50964576 None:intergenic 25.0%
! AATGAAAAAGGTTAAGTGAA+TGG - chr1_3:50964602-50964621 None:intergenic 25.0%
!!! ATTCACTTAACCTTTTTCAT+TGG + chr1_3:50964601-50964620 Msa0123640:intron 25.0%
!!! TTCATTGGTTATTTTTGTCA+TGG + chr1_3:50964616-50964635 Msa0123640:intron 25.0%
!!! GTTCAATAAAGTTGATATTC+CGG + chr1_3:50964718-50964737 Msa0123640:CDS 25.0%
!! ACAATATAAACATTTTGCCT+TGG - chr1_3:50964963-50964982 None:intergenic 25.0%
! ATAAACTGAAATAAGCCATT+AGG - chr1_3:50965159-50965178 None:intergenic 25.0%
!! CATTAGGATTTTTAAATGCA+TGG - chr1_3:50965213-50965232 None:intergenic 25.0%
! CATGCATTTAAAAATCCTAA+TGG + chr1_3:50965211-50965230 Msa0123640:intron 25.0%
!! ATTAGGATTTCTAGATTTAG+AGG - chr1_3:50965358-50965377 None:intergenic 25.0%
! TCTAAATCTAGAAATCCTAA+TGG + chr1_3:50965357-50965376 Msa0123640:intron 25.0%
! ATAAACTGAAATAAGCCATT+AGG - chr1_3:50965159-50965178 None:intergenic 25.0%
! AGTTGCTAAAATTAGAGTTT+AGG + chr1_3:50965498-50965517 Msa0123640:intron 25.0%
! CATTAAGATTTCTAAATGCA+TGG - chr1_3:50965532-50965551 None:intergenic 25.0%
! CATGCATTTAGAAATCTTAA+TGG + chr1_3:50965530-50965549 Msa0123640:intron 25.0%
! TCATTATCAGTAACCTATAT+TGG - chr1_3:50965713-50965732 None:intergenic 25.0%
! CCTTTACCAAATATATATGA+AGG - chr1_3:50965919-50965938 None:intergenic 25.0%
! CCTTCATATATATTTGGTAA+AGG + chr1_3:50965916-50965935 Msa0123640:CDS 25.0%
! TCATATATATTTGGTAAAGG+AGG + chr1_3:50965919-50965938 Msa0123640:CDS 25.0%
! CATATATATTTGGTAAAGGA+GGG + chr1_3:50965920-50965939 Msa0123640:CDS 25.0%
! ATATATATTTGGTAAAGGAG+GGG + chr1_3:50965921-50965940 Msa0123640:CDS 25.0%
! AAAATTTAATCCCATTTCAG+TGG - chr1_3:50965959-50965978 None:intergenic 25.0%
!! ATTATAATTTTGCAGATCAC+CGG + chr1_3:50966026-50966045 Msa0123640:intron 25.0%
! AAAAAACTAAATAATGCCAG+GGG + chr1_3:50966156-50966175 Msa0123640:intron 25.0%
!!! ACCGTTCAGTTTTTTTTTTT+TGG + chr1_3:50966454-50966473 Msa0123640:intron 25.0%
! CCCAAAAAAAAAAAACTGAA+CGG - chr1_3:50966458-50966477 None:intergenic 25.0%
!!! CCGTTCAGTTTTTTTTTTTT+GGG + chr1_3:50966455-50966474 Msa0123640:intron 25.0%
!!! GTGCTGTTTTCAATAATTTA+AGG - chr1_3:50966539-50966558 None:intergenic 25.0%
! ATATGGAAATATAGCTGAAA+AGG + chr1_3:50966727-50966746 Msa0123640:CDS 25.0%
! ACATTTCATAGTAAAATCTC+TGG - chr1_3:50966785-50966804 None:intergenic 25.0%
!!! GTTATAAGGTTCTTTTTTTG+TGG + chr1_3:50967110-50967129 Msa0123640:three_prime_UTR 25.0%
TACAATTACATTCAACAGCA+AGG - chr1_3:50957994-50958013 None:intergenic 30.0%
!!! GTGGATTTGAGATTTTGATT+AGG - chr1_3:50958073-50958092 None:intergenic 30.0%
! TTGATGTGAATGTTTTCTCA+GGG - chr1_3:50958108-50958127 None:intergenic 30.0%
! TTTGATGTGAATGTTTTCTC+AGG - chr1_3:50958109-50958128 None:intergenic 30.0%
GATATAAGCCTATGTTTGAT+AGG + chr1_3:50958464-50958483 Msa0123640:intron 30.0%
!!! TTTTACACTTAGGCTTTGTT+TGG + chr1_3:50958576-50958595 Msa0123640:intron 30.0%
TATTGAGCTTGGATTGAATT+TGG + chr1_3:50959065-50959084 Msa0123640:intron 30.0%
TTTGAGCGACTGAAATAAAA+TGG - chr1_3:50959104-50959123 None:intergenic 30.0%
ATAATCACTTGAGATGTTGA+TGG - chr1_3:50959389-50959408 None:intergenic 30.0%
!!! ATTTTTAAGGTCCATACTAG+GGG + chr1_3:50959594-50959613 Msa0123640:intron 30.0%
GAAAATGACAATTACCAAAC+AGG + chr1_3:50959750-50959769 Msa0123640:intron 30.0%
AAGACACATATTTGAGCTTA+TGG - chr1_3:50959810-50959829 None:intergenic 30.0%
AAATATGTGTCTTACCAAAC+AGG + chr1_3:50959817-50959836 Msa0123640:intron 30.0%
AATAAATTTAAGGGCCTGTT+TGG - chr1_3:50959834-50959853 None:intergenic 30.0%
GGATACATTTACACAAAAGT+GGG - chr1_3:50959863-50959882 None:intergenic 30.0%
AATGTAAAGTGGTTTCTGTT+CGG - chr1_3:50959884-50959903 None:intergenic 30.0%
AAAGTGAGAAGAATGTAAAG+TGG - chr1_3:50959895-50959914 None:intergenic 30.0%
! TCAACTAATAAGAGCTTGTT+TGG - chr1_3:50960126-50960145 None:intergenic 30.0%
TTCATCATGATAGGAATGTT+GGG - chr1_3:50960264-50960283 None:intergenic 30.0%
! TCATCGACAATTTAGGTTAA+AGG - chr1_3:50960558-50960577 None:intergenic 30.0%
! ATTTCTACATGTGTGCTTTT+AGG + chr1_3:50960641-50960660 Msa0123640:intron 30.0%
AAAATTGCTTGAATGTAGAG+TGG - chr1_3:50960717-50960736 None:intergenic 30.0%
AATCCAAAAAACCAATGAAG+TGG - chr1_3:50960940-50960959 None:intergenic 30.0%
!!! ACTTCATTGGTTTTTTGGAT+TGG + chr1_3:50960939-50960958 Msa0123640:intron 30.0%
ATCCAATACATAACTAGAAG+AGG + chr1_3:50960967-50960986 Msa0123640:intron 30.0%
TTACGCGAACAGAAAATTAT+TGG - chr1_3:50961205-50961224 None:intergenic 30.0%
! ATGATTCCCATTGATAGTTA+CGG + chr1_3:50961239-50961258 Msa0123640:CDS 30.0%
!! GATTCTGAGACATAGATATT+TGG - chr1_3:50961637-50961656 None:intergenic 30.0%
TATCAGGTAACTAACCATTT+AGG + chr1_3:50961663-50961682 Msa0123640:intron 30.0%
GTAACTAACCATTTAGGAAT+CGG + chr1_3:50961669-50961688 Msa0123640:intron 30.0%
TAACTAACCATTTAGGAATC+GGG + chr1_3:50961670-50961689 Msa0123640:intron 30.0%
! CTATAGCAAATACGTGTTTT+AGG + chr1_3:50961940-50961959 Msa0123640:intron 30.0%
ATTTAAAGGGTGACAAACAA+AGG + chr1_3:50962183-50962202 Msa0123640:intron 30.0%
ATTCCAACACAAGATATTAG+AGG + chr1_3:50962208-50962227 Msa0123640:intron 30.0%
TTCCAACACAAGATATTAGA+GGG + chr1_3:50962209-50962228 Msa0123640:intron 30.0%
GGGATAAATATAAGATAGCT+AGG + chr1_3:50962444-50962463 Msa0123640:intron 30.0%
ATATAAGATAGCTAGGAAAG+AGG + chr1_3:50962451-50962470 Msa0123640:intron 30.0%
GAAGGATTATACCAATCTTT+AGG + chr1_3:50962512-50962531 Msa0123640:intron 30.0%
GACGATAATAGTTATAGTTC+CGG - chr1_3:50962757-50962776 None:intergenic 30.0%
GGAACTATAACTATTATCGT+CGG + chr1_3:50962756-50962775 Msa0123640:intron 30.0%
! TTCCAATCTTTAAGAACAAG+GGG + chr1_3:50962966-50962985 Msa0123640:intron 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + chr1_3:50963202-50963221 Msa0123640:intron 30.0%
! GTAGATTTTCCCATAACAAT+AGG + chr1_3:50963359-50963378 Msa0123640:intron 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG + chr1_3:50963421-50963440 Msa0123640:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_3:50964007-50964026 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_3:50964077-50964096 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_3:50964078-50964097 Msa0123640:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_3:50964136-50964155 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_3:50964158-50964177 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_3:50964197-50964216 Msa0123640:intron 30.0%
!! AGATTTTTCAATAACCACCA+TGG + chr1_3:50964290-50964309 Msa0123640:intron 30.0%
! AGCTTAAAATGATGAGCTTT+TGG + chr1_3:50964352-50964371 Msa0123640:intron 30.0%
GAATGGAAACTTGATAAGAA+AGG - chr1_3:50964585-50964604 None:intergenic 30.0%
TTTGCCTTGGAAAAACAATT+GGG - chr1_3:50964950-50964969 None:intergenic 30.0%
! TTTTGCCTTGGAAAAACAAT+TGG - chr1_3:50964951-50964970 None:intergenic 30.0%
CATTGTACCATTACTACATT+TGG + chr1_3:50964996-50965015 Msa0123640:intron 30.0%
CATTAGGATTTCTAAATGCA+TGG - chr1_3:50965143-50965162 None:intergenic 30.0%
CATGCATTTAGAAATCCTAA+TGG + chr1_3:50965141-50965160 Msa0123640:intron 30.0%
TGGTTTATCATAGAACACTA+TGG - chr1_3:50965314-50965333 None:intergenic 30.0%
GTTCTATGATAAACCATGTT+TGG + chr1_3:50965318-50965337 Msa0123640:intron 30.0%
ATCAGCCATTTCTTCTTATT+TGG + chr1_3:50965757-50965776 Msa0123640:intron 30.0%
GAACACCAAATAAGAAGAAA+TGG - chr1_3:50965765-50965784 None:intergenic 30.0%
TATGATTCCCAAAATCTGTA+AGG - chr1_3:50965857-50965876 None:intergenic 30.0%
!! GACTAAATTTTGAGAGATTG+AGG + chr1_3:50966271-50966290 Msa0123640:intron 30.0%
ATTTAAAAGTAAGCAAACCC+CGG - chr1_3:50966883-50966902 None:intergenic 30.0%
TGTAGTATAAGATAAGATGC+AGG + chr1_3:50966914-50966933 Msa0123640:three_prime_UTR 30.0%
ACAAATCTAAATCATACGTG+AGG - chr1_3:50966940-50966959 None:intergenic 30.0%
TTTGTTTAATAAGCAGTTGG+TGG + chr1_3:50966979-50966998 Msa0123640:three_prime_UTR 30.0%
ATGCCATTCCTTAAGTTATA+AGG + chr1_3:50967096-50967115 Msa0123640:three_prime_UTR 30.0%
GAACCTTATAACTTAAGGAA+TGG - chr1_3:50967102-50967121 None:intergenic 30.0%
!!! TTCTTTTTTTGTGGTTGTGT+TGG + chr1_3:50967119-50967138 Msa0123640:three_prime_UTR 30.0%
AAAGAGATTTATTCTTGACC+TGG + chr1_3:50967188-50967207 Msa0123640:three_prime_UTR 30.0%
!! GCACTTTGTTTAGTTTGAGT+TGG - chr1_3:50957948-50957967 None:intergenic 35.0%
TTACATTCAACAGCAAGGAA+TGG - chr1_3:50957989-50958008 None:intergenic 35.0%
! TGATGTGAATGTTTTCTCAG+GGG - chr1_3:50958107-50958126 None:intergenic 35.0%
!! CATTCACATCAAAGTTGATG+AGG + chr1_3:50958116-50958135 Msa0123640:five_prime_UTR 35.0%
TATCGTTTCATTCTGATCAG+TGG + chr1_3:50958224-50958243 Msa0123640:intron 35.0%
TTTACCAGAAGCAATAGCTA+TGG - chr1_3:50958305-50958324 None:intergenic 35.0%
ATAGCTATTGCTTCTGGTAA+AGG + chr1_3:50958304-50958323 Msa0123640:five_prime_UTR 35.0%
GCTATAAGCTGCAAATTGAA+GGG - chr1_3:50958365-50958384 None:intergenic 35.0%
TGCTATAAGCTGCAAATTGA+AGG - chr1_3:50958366-50958385 None:intergenic 35.0%
AAGCCTATGTTTGATAGGTT+TGG + chr1_3:50958469-50958488 Msa0123640:intron 35.0%
CAACCAAACCTATCAAACAT+AGG - chr1_3:50958475-50958494 None:intergenic 35.0%
! CTATGTTTGATAGGTTTGGT+TGG + chr1_3:50958473-50958492 Msa0123640:intron 35.0%
!!! TGGTTGGTTTTGAGTTGAAT+TGG + chr1_3:50958489-50958508 Msa0123640:intron 35.0%
!!! TGTTTTAGGGGTGCATATTA+GGG - chr1_3:50958784-50958803 None:intergenic 35.0%
!!! TTGTTTTAGGGGTGCATATT+AGG - chr1_3:50958785-50958804 None:intergenic 35.0%
AATATGCACCCCTAAAACAA+AGG + chr1_3:50958785-50958804 Msa0123640:intron 35.0%
TTGTGGTAGGTCATTTGTAT+TGG - chr1_3:50958823-50958842 None:intergenic 35.0%
AAATTGTGAGCAACAGATTG+TGG - chr1_3:50958840-50958859 None:intergenic 35.0%
TTGTCTCTTTGTCATCTCTA+AGG + chr1_3:50958963-50958982 Msa0123640:intron 35.0%
ATATCCAGATCTATTGAGCT+TGG + chr1_3:50959054-50959073 Msa0123640:intron 35.0%
AGAAAAAAAAAGGCCTGACA+AGG - chr1_3:50959147-50959166 None:intergenic 35.0%
!!! TTTGGCTTTTTGTTTCTGTG+AGG - chr1_3:50959203-50959222 None:intergenic 35.0%
! GCATCGAGATCAATGATTTT+GGG - chr1_3:50959302-50959321 None:intergenic 35.0%
AAAATCATTGATCTCGATGC+CGG + chr1_3:50959302-50959321 Msa0123640:intron 35.0%
TATTGCAGTGACATTTCATC+AGG + chr1_3:50959332-50959351 Msa0123640:intron 35.0%
ATTGCAGTGACATTTCATCA+GGG + chr1_3:50959333-50959352 Msa0123640:intron 35.0%
! ATTCATCTATTTGTGGACTG+TGG + chr1_3:50959360-50959379 Msa0123640:intron 35.0%
AAGTGATTATACTGCTCTCT+TGG + chr1_3:50959399-50959418 Msa0123640:intron 35.0%
ATTGACTAAATAGAGGCAAC+TGG + chr1_3:50959531-50959550 Msa0123640:intron 35.0%
! CAGTAGTAGGTAATTTGTAG+TGG + chr1_3:50959554-50959573 Msa0123640:intron 35.0%
! GGTAATTTGTAGTGGTTCAT+TGG + chr1_3:50959562-50959581 Msa0123640:intron 35.0%
AATTTGTAGTGGTTCATTGG+TGG + chr1_3:50959565-50959584 Msa0123640:intron 35.0%
!!! TTGGTGGACCCTTATTTTTA+AGG + chr1_3:50959581-50959600 Msa0123640:intron 35.0%
ATGACTGAAAAAGACCTGTT+TGG - chr1_3:50959767-50959786 None:intergenic 35.0%
CGGATACATTTACACAAAAG+TGG - chr1_3:50959864-50959883 None:intergenic 35.0%
! AAGCTACTCTGAAGAACTTA+TGG + chr1_3:50959999-50960018 Msa0123640:intron 35.0%
TGCAAGTAAGTTCCAATTGA+AGG + chr1_3:50960209-50960228 Msa0123640:five_prime_UTR 35.0%
AGTAAGTTCCAATTGAAGGT+TGG + chr1_3:50960213-50960232 Msa0123640:five_prime_UTR 35.0%
GTAAGTTCCAATTGAAGGTT+GGG + chr1_3:50960214-50960233 Msa0123640:five_prime_UTR 35.0%
TTACTTGATGCTGATGTGTA+TGG + chr1_3:50960237-50960256 Msa0123640:five_prime_UTR 35.0%
GTTCATCATGATAGGAATGT+TGG - chr1_3:50960265-50960284 None:intergenic 35.0%
! TCTCTATAATGTACTGGTAC+AGG + chr1_3:50960330-50960349 Msa0123640:intron 35.0%
TCAAATGTGATCACACATGT+CGG + chr1_3:50960502-50960521 Msa0123640:intron 35.0%
!! TGAGAAGCATTCATCTTCAA+TGG + chr1_3:50960612-50960631 Msa0123640:intron 35.0%
!!! CATCCACTTCATTGGTTTTT+TGG + chr1_3:50960934-50960953 Msa0123640:intron 35.0%
!!! CATTGGTTTTTTGGATTGGA+CGG + chr1_3:50960943-50960962 Msa0123640:intron 35.0%
! CTCCTCTTCTAGTTATGTAT+TGG - chr1_3:50960972-50960991 None:intergenic 35.0%
ATTATTGGCATGAACTGCAA+TGG - chr1_3:50961190-50961209 None:intergenic 35.0%
! TGATTCCCATTGATAGTTAC+GGG + chr1_3:50961240-50961259 Msa0123640:CDS 35.0%
TTGATCCCGTAACTATCAAT+GGG - chr1_3:50961248-50961267 None:intergenic 35.0%
GGATCAAGTGTATGTCAATA+GGG + chr1_3:50961261-50961280 Msa0123640:CDS 35.0%
AATTTCTGCTTTCCCTTGAT+TGG + chr1_3:50961345-50961364 Msa0123640:intron 35.0%
ATGAAAAGGAGACCAATCAA+GGG - chr1_3:50961360-50961379 None:intergenic 35.0%
AATGAAAAGGAGACCAATCA+AGG - chr1_3:50961361-50961380 None:intergenic 35.0%
!! CCAAGAACTAAAGTTCTAGA+AGG - chr1_3:50961419-50961438 None:intergenic 35.0%
!! CCTTCTAGAACTTTAGTTCT+TGG + chr1_3:50961416-50961435 Msa0123640:intron 35.0%
TATCTATCACCAGAATGTCA+AGG - chr1_3:50961592-50961611 None:intergenic 35.0%
!! AGTTCTAGTTGGATGCTTTT+TGG + chr1_3:50961698-50961717 Msa0123640:intron 35.0%
!! GTTCTAGTTGGATGCTTTTT+GGG + chr1_3:50961699-50961718 Msa0123640:intron 35.0%
!! TTCTAGTTGGATGCTTTTTG+GGG + chr1_3:50961700-50961719 Msa0123640:intron 35.0%
TTGTCAAATATCGGCATCAT+CGG + chr1_3:50961905-50961924 Msa0123640:intron 35.0%
!!! TACGTGTTTTAGGAAAAGAG+AGG + chr1_3:50961950-50961969 Msa0123640:intron 35.0%
ATCTCATCACTTACAAGAGT+GGG + chr1_3:50961976-50961995 Msa0123640:intron 35.0%
GAAATCAATCTGAGAACATG+AGG - chr1_3:50962003-50962022 None:intergenic 35.0%
TTCTCATTAGGAAAACAGAC+AGG + chr1_3:50962024-50962043 Msa0123640:intron 35.0%
TTAGACTGTAAAGTCATACC+TGG + chr1_3:50962056-50962075 Msa0123640:intron 35.0%
AACTACCCAACATAGAGTAA+TGG + chr1_3:50962088-50962107 Msa0123640:intron 35.0%
CATCACCATTACTCTATGTT+GGG - chr1_3:50962096-50962115 None:intergenic 35.0%
!! AGTAATGGTGATGGATGTAA+GGG + chr1_3:50962103-50962122 Msa0123640:intron 35.0%
AATCAAGTGGTGGCATTTAA+AGG + chr1_3:50962169-50962188 Msa0123640:intron 35.0%
ATCAAGTGGTGGCATTTAAA+GGG + chr1_3:50962170-50962189 Msa0123640:intron 35.0%
ACAGTGTTCAGAGTAAAGTT+CGG + chr1_3:50962369-50962388 Msa0123640:intron 35.0%
AGTGTAAAAATGCCGAAACT+TGG + chr1_3:50962423-50962442 Msa0123640:intron 35.0%
GTGTAAAAATGCCGAAACTT+GGG + chr1_3:50962424-50962443 Msa0123640:intron 35.0%
ATACCAATCTTTAGGTACCA+AGG + chr1_3:50962520-50962539 Msa0123640:intron 35.0%
AAGTGTATTAAGGACGAAGA+GGG + chr1_3:50962611-50962630 Msa0123640:intron 35.0%
GGTGCAAGAAAGAGATATTA+AGG + chr1_3:50962643-50962662 Msa0123640:intron 35.0%
TAACTATTATCGTCGGATTC+AGG + chr1_3:50962763-50962782 Msa0123640:intron 35.0%
!! AGGTGAAAGAAGCATTGAAA+AGG + chr1_3:50962792-50962811 Msa0123640:intron 35.0%
GCATTGAAAAGGATGAGTAA+TGG + chr1_3:50962803-50962822 Msa0123640:intron 35.0%
! AACTTTTCAGCGAGATTATG+AGG + chr1_3:50962903-50962922 Msa0123640:intron 35.0%
! TCCAATCTTTAAGAACAAGG+GGG + chr1_3:50962967-50962986 Msa0123640:intron 35.0%
TGAGTCATACCATGAAGTTA+TGG + chr1_3:50963029-50963048 Msa0123640:intron 35.0%
GAGTCATACCATGAAGTTAT+GGG + chr1_3:50963030-50963049 Msa0123640:intron 35.0%
ATACCATGAAGTTATGGGAA+AGG + chr1_3:50963035-50963054 Msa0123640:intron 35.0%
TACCATGAAGTTATGGGAAA+GGG + chr1_3:50963036-50963055 Msa0123640:intron 35.0%
AAGAAAAGAGACTCACGTTA+CGG + chr1_3:50963075-50963094 Msa0123640:intron 35.0%
!!! AACCAATTTGGTTTTATGCC+TGG + chr1_3:50963100-50963119 Msa0123640:intron 35.0%
!!! ACCAATTTGGTTTTATGCCT+GGG + chr1_3:50963101-50963120 Msa0123640:intron 35.0%
GATTTCCACAAAATCTCTCT+AGG - chr1_3:50963242-50963261 None:intergenic 35.0%
! AGAGATTTTGTGGAAATCCT+TGG + chr1_3:50963244-50963263 Msa0123640:intron 35.0%
ATCCTGGATAGCTCTTATAT+AGG - chr1_3:50963291-50963310 None:intergenic 35.0%
! TCTGCAAAAAGCATACATCT+CGG - chr1_3:50963467-50963486 None:intergenic 35.0%
TGGAATGTAACTTCAGCAAA+AGG + chr1_3:50963600-50963619 Msa0123640:intron 35.0%
ATATCTAAACCGCGTAACTT+GGG - chr1_3:50963672-50963691 None:intergenic 35.0%
TTACGCGGTTTAGATATCTT+GGG + chr1_3:50963675-50963694 Msa0123640:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - chr1_3:50963702-50963721 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG + chr1_3:50963735-50963754 Msa0123640:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr1_3:50963800-50963819 Msa0123640:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_3:50963809-50963828 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr1_3:50963813-50963832 Msa0123640:intron 35.0%
AAACTAGACAGGATAGGATT+AGG + chr1_3:50963948-50963967 Msa0123640:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_3:50964000-50964019 Msa0123640:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_3:50964020-50964039 Msa0123640:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_3:50964025-50964044 Msa0123640:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr1_3:50964081-50964100 Msa0123640:intron 35.0%
! TCAGTGTTATTGATTGCAGA+TGG - chr1_3:50964394-50964413 None:intergenic 35.0%
!! GAACTGAAGTGTCGTAATAT+TGG + chr1_3:50964515-50964534 Msa0123640:intron 35.0%
GATAAGAAAGGTCATCTCAA+AGG - chr1_3:50964573-50964592 None:intergenic 35.0%
! TTTTGTCATGGCTTCTTCTA+TGG + chr1_3:50964628-50964647 Msa0123640:intron 35.0%
TCCTCAAGATGTTGCATTAA+TGG + chr1_3:50964673-50964692 Msa0123640:CDS 35.0%
TCCATTAATGCAACATCTTG+AGG - chr1_3:50964677-50964696 None:intergenic 35.0%
TGAATGAAACCAGTAGTGTT+TGG - chr1_3:50964856-50964875 None:intergenic 35.0%
!! TCATCCCAATTGTTTTTCCA+AGG + chr1_3:50964943-50964962 Msa0123640:intron 35.0%
TACCATTACTACATTTGGCA+TGG + chr1_3:50965001-50965020 Msa0123640:intron 35.0%
ATCCATGCCAAATGTAGTAA+TGG - chr1_3:50965006-50965025 None:intergenic 35.0%
GGATTTCAACCAACTTAATG+AGG - chr1_3:50965063-50965082 None:intergenic 35.0%
! ATCAGGAGATTGCATTTTGT+CGG + chr1_3:50965095-50965114 Msa0123640:intron 35.0%
! TTTTGTCGGAATCAGAGTTT+AGG + chr1_3:50965109-50965128 Msa0123640:intron 35.0%
! TGTTGTTGTTGTATGCCATT+AGG - chr1_3:50965229-50965248 None:intergenic 35.0%
CAATTCTTATCCCACTAAGT+GGG + chr1_3:50965264-50965283 Msa0123640:intron 35.0%
AATTCTTATCCCACTAAGTG+GGG + chr1_3:50965265-50965284 Msa0123640:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr1_3:50965346-50965365 None:intergenic 35.0%
AATGGCTGATATATCAATGC+AGG - chr1_3:50965747-50965766 None:intergenic 35.0%
GATTATCAGACATCAAAGCT+AGG - chr1_3:50965818-50965837 None:intergenic 35.0%
! CAACTGTCCTTACAGATTTT+GGG + chr1_3:50965847-50965866 Msa0123640:intron 35.0%
! TGCTTTAAATGTCCACATTG+TGG + chr1_3:50965889-50965908 Msa0123640:CDS 35.0%
GGCGAACCTTCATATATATT+TGG + chr1_3:50965910-50965929 Msa0123640:CDS 35.0%
TTGAAGCAAGCAATTGAACA+CGG + chr1_3:50966055-50966074 Msa0123640:intron 35.0%
!! ATTTTCTCGTTTTATTGGGC+TGG + chr1_3:50966355-50966374 Msa0123640:intron 35.0%
TGCTATTGCTGTATCTTTCA+TGG + chr1_3:50966419-50966438 Msa0123640:intron 35.0%
GCTATTGCTGTATCTTTCAT+GGG + chr1_3:50966420-50966439 Msa0123640:intron 35.0%
TCACTTAATACCAGGAATAG+AGG - chr1_3:50966564-50966583 None:intergenic 35.0%
TGCAAATCTCACTTAATACC+AGG - chr1_3:50966572-50966591 None:intergenic 35.0%
!! TTATCGATTCAAGATACCAC+TGG + chr1_3:50966628-50966647 Msa0123640:intron 35.0%
!! TCTGTAGTTTCTAGAGCATA+TGG + chr1_3:50966710-50966729 Msa0123640:CDS 35.0%
AAAGGTTGTTCAGAAACTCA+AGG + chr1_3:50966745-50966764 Msa0123640:CDS 35.0%
! TTCCCTTATGCTGTTTAAAC+CGG + chr1_3:50966861-50966880 Msa0123640:three_prime_UTR 35.0%
!! GTGGGAAGGTTATCATTTTT+AGG + chr1_3:50967149-50967168 Msa0123640:three_prime_UTR 35.0%
TTTCATTCTGATCAGTGGCT+AGG + chr1_3:50958229-50958248 Msa0123640:intron 40.0%
GATACCATAGCTATTGCTTC+TGG + chr1_3:50958298-50958317 Msa0123640:five_prime_UTR 40.0%
!!! GTTTTAGGGGTGCATATTAG+GGG - chr1_3:50958783-50958802 None:intergenic 40.0%
!!! ATCGGTGGACCTTTGTTTTA+GGG - chr1_3:50958797-50958816 None:intergenic 40.0%
! GGTCATTTGTATTGGTCCAT+CGG - chr1_3:50958815-50958834 None:intergenic 40.0%
TGATGCGTCAAGAAAGAAGA+AGG - chr1_3:50958913-50958932 None:intergenic 40.0%
CAATCCAAGCTCAATAGATC+TGG - chr1_3:50959061-50959080 None:intergenic 40.0%
!! GGCATCGAGATCAATGATTT+TGG - chr1_3:50959303-50959322 None:intergenic 40.0%
TTGCAGTGACATTTCATCAG+GGG + chr1_3:50959334-50959353 Msa0123640:intron 40.0%
CTCTTGGTATCCATCTATTG+AGG + chr1_3:50959415-50959434 Msa0123640:intron 40.0%
GTATCCATCTATTGAGGTTC+TGG + chr1_3:50959421-50959440 Msa0123640:intron 40.0%
TTCACCAGAACCTCAATAGA+TGG - chr1_3:50959428-50959447 None:intergenic 40.0%
CAAGTAACCCAACCTTCAAT+TGG - chr1_3:50960224-50960243 None:intergenic 40.0%
! GTGTCGATGTTCATCATGAT+AGG - chr1_3:50960273-50960292 None:intergenic 40.0%
GATATACCTTGAGTGACTTC+AGG - chr1_3:50960300-50960319 None:intergenic 40.0%
TACTGGTACAGGCACAATAT+GGG + chr1_3:50960341-50960360 Msa0123640:intron 40.0%
! TGTCAGTTTCGTAAGAGTGT+CGG - chr1_3:50960444-50960463 None:intergenic 40.0%
!!! ATCACACATGTCGGTTTTGT+AGG + chr1_3:50960511-50960530 Msa0123640:intron 40.0%
GCATTCATCTTCAATGGCAT+TGG + chr1_3:50960618-50960637 Msa0123640:intron 40.0%
AACTGCAATGGAAGATGGAA+AGG - chr1_3:50961178-50961197 None:intergenic 40.0%
CTTGATCCCGTAACTATCAA+TGG - chr1_3:50961249-50961268 None:intergenic 40.0%
GGGATCAAGTGTATGTCAAT+AGG + chr1_3:50961260-50961279 Msa0123640:CDS 40.0%
TATGTCAATAGGGTTCCTTG+TGG + chr1_3:50961271-50961290 Msa0123640:CDS 40.0%
TACAGCTACATGCATACCAT+GGG - chr1_3:50961326-50961345 None:intergenic 40.0%
TTACAGCTACATGCATACCA+TGG - chr1_3:50961327-50961346 None:intergenic 40.0%
AAGCTCTTGAGAAAATGACG+AGG + chr1_3:50961549-50961568 Msa0123640:CDS 40.0%
AGCTCTTGAGAAAATGACGA+GGG + chr1_3:50961550-50961569 Msa0123640:CDS 40.0%
TCTCAGAATCTGCAACTATC+AGG + chr1_3:50961647-50961666 Msa0123640:CDS 40.0%
CTATCTTCCCGATTCCTAAA+TGG - chr1_3:50961680-50961699 None:intergenic 40.0%
!! ATCGGGAAGATAGTTCTAGT+TGG + chr1_3:50961687-50961706 Msa0123640:intron 40.0%
!! TCTAGTTGGATGCTTTTTGG+GGG + chr1_3:50961701-50961720 Msa0123640:intron 40.0%
TTGCATTAGACATCACCAAC+AGG - chr1_3:50961731-50961750 None:intergenic 40.0%
CAAAACTTAGCCAAACAGCT+TGG + chr1_3:50961748-50961767 Msa0123640:intron 40.0%
AAGTAAAGGTCCAAGCTGTT+TGG - chr1_3:50961761-50961780 None:intergenic 40.0%
CCTAGCACAACCTTCTTTAT+GGG - chr1_3:50961844-50961863 None:intergenic 40.0%
ACCTAGCACAACCTTCTTTA+TGG - chr1_3:50961845-50961864 None:intergenic 40.0%
CATCTCATCACTTACAAGAG+TGG + chr1_3:50961975-50961994 Msa0123640:intron 40.0%
TCTCATCACTTACAAGAGTG+GGG + chr1_3:50961977-50961996 Msa0123640:intron 40.0%
TGTAAAGTCATACCTGGAGA+GGG + chr1_3:50962062-50962081 Msa0123640:intron 40.0%
CCATCACCATTACTCTATGT+TGG - chr1_3:50962097-50962116 None:intergenic 40.0%
CCAACATAGAGTAATGGTGA+TGG + chr1_3:50962094-50962113 Msa0123640:intron 40.0%
!! GAGTAATGGTGATGGATGTA+AGG + chr1_3:50962102-50962121 Msa0123640:intron 40.0%
! TGATGGATGTAAGGGTTAAG+AGG + chr1_3:50962111-50962130 Msa0123640:intron 40.0%
CTCCCTCTAATATCTTGTGT+TGG - chr1_3:50962214-50962233 None:intergenic 40.0%
CAACACAAGATATTAGAGGG+AGG + chr1_3:50962212-50962231 Msa0123640:intron 40.0%
AGATATTAGAGGGAGGTTTC+AGG + chr1_3:50962219-50962238 Msa0123640:intron 40.0%
ATATCATTAGCGCTTCCATG+TGG - chr1_3:50962248-50962267 None:intergenic 40.0%
!! ATGGAAGCGCTAATGATATG+TGG + chr1_3:50962249-50962268 Msa0123640:intron 40.0%
!! TGGAAGCGCTAATGATATGT+GGG + chr1_3:50962250-50962269 Msa0123640:intron 40.0%
TAATGATATGTGGGAGAGGA+TGG + chr1_3:50962259-50962278 Msa0123640:intron 40.0%
GATGGCTCATGAGATTAAGA+AGG + chr1_3:50962277-50962296 Msa0123640:intron 40.0%
! TTGGGAGAATCTAGAGGTTT+TGG + chr1_3:50962314-50962333 Msa0123640:intron 40.0%
!!! AATCTAGAGGTTTTGGACCT+AGG + chr1_3:50962321-50962340 Msa0123640:intron 40.0%
!!! ATCTAGAGGTTTTGGACCTA+GGG + chr1_3:50962322-50962341 Msa0123640:intron 40.0%
CAATCTTTAGGTACCAAGGA+GGG + chr1_3:50962524-50962543 Msa0123640:intron 40.0%
AATCTTTAGGTACCAAGGAG+GGG + chr1_3:50962525-50962544 Msa0123640:intron 40.0%
TAATACACTTCACTTGGTCC+AGG - chr1_3:50962601-50962620 None:intergenic 40.0%
GGACCAAGTGAAGTGTATTA+AGG + chr1_3:50962601-50962620 Msa0123640:intron 40.0%
CGTCCTTAATACACTTCACT+TGG - chr1_3:50962607-50962626 None:intergenic 40.0%
GAAGTGTATTAAGGACGAAG+AGG + chr1_3:50962610-50962629 Msa0123640:intron 40.0%
ATGTCTAACCTGTTAGAGTC+GGG - chr1_3:50962722-50962741 None:intergenic 40.0%
GATGTCTAACCTGTTAGAGT+CGG - chr1_3:50962723-50962742 None:intergenic 40.0%
TAACAGGTTAGACATCAGAG+AGG + chr1_3:50962727-50962746 Msa0123640:intron 40.0%
GAAAAGGATGAGTAATGGCA+AGG + chr1_3:50962808-50962827 Msa0123640:intron 40.0%
ACTTCGATAGGTATGTTGTC+CGG - chr1_3:50962842-50962861 None:intergenic 40.0%
ACAACATACCTATCGAAGTG+TGG + chr1_3:50962843-50962862 Msa0123640:intron 40.0%
! AGACTTTTCCACACTTCGAT+AGG - chr1_3:50962854-50962873 None:intergenic 40.0%
ATCGAAGTGTGGAAAAGTCT+TGG + chr1_3:50962854-50962873 Msa0123640:intron 40.0%
TCCCCCTTGTTCTTAAAGAT+TGG - chr1_3:50962971-50962990 None:intergenic 40.0%
CAACATTGCGCGAATTATAG+AGG + chr1_3:50962995-50963014 Msa0123640:intron 40.0%
TACCCTTTCCCATAACTTCA+TGG - chr1_3:50963041-50963060 None:intergenic 40.0%
CACGTTACGGATAACCAATT+TGG + chr1_3:50963088-50963107 Msa0123640:intron 40.0%
TCCCAGGCATAAAACCAAAT+TGG - chr1_3:50963105-50963124 None:intergenic 40.0%
!!! AATTTGGTTTTATGCCTGGG+AGG + chr1_3:50963104-50963123 Msa0123640:intron 40.0%
! GAGTACCTAGAGAGATTTTG+TGG + chr1_3:50963234-50963253 Msa0123640:intron 40.0%
TGGAAATCCTTGGAGAAGAA+AGG + chr1_3:50963254-50963273 Msa0123640:intron 40.0%
GGAAATCCTTGGAGAAGAAA+GGG + chr1_3:50963255-50963274 Msa0123640:intron 40.0%
GAAATCCTTGGAGAAGAAAG+GGG + chr1_3:50963256-50963275 Msa0123640:intron 40.0%
TGCCTATATAAGAGCTATCC+AGG + chr1_3:50963286-50963305 Msa0123640:intron 40.0%
AGCTATCCAGGATATGTATG+AGG + chr1_3:50963298-50963317 Msa0123640:intron 40.0%
GCTATCCAGGATATGTATGA+GGG + chr1_3:50963299-50963318 Msa0123640:intron 40.0%
CTATCCAGGATATGTATGAG+GGG + chr1_3:50963300-50963319 Msa0123640:intron 40.0%
TATCCAGGATATGTATGAGG+GGG + chr1_3:50963301-50963320 Msa0123640:intron 40.0%
TGGTGCAGTCCTATTGTTAT+GGG - chr1_3:50963371-50963390 None:intergenic 40.0%
TTGGTGCAGTCCTATTGTTA+TGG - chr1_3:50963372-50963391 None:intergenic 40.0%
ATAACAATAGGACTGCACCA+AGG + chr1_3:50963371-50963390 Msa0123640:intron 40.0%
TAACAATAGGACTGCACCAA+GGG + chr1_3:50963372-50963391 Msa0123640:intron 40.0%
TAGAAGCAAGACGGAGTATA+TGG + chr1_3:50963580-50963599 Msa0123640:intron 40.0%
AACTTCAGCAAAAGGAGAAG+TGG + chr1_3:50963608-50963627 Msa0123640:intron 40.0%
ACTTCAGCAAAAGGAGAAGT+GGG + chr1_3:50963609-50963628 Msa0123640:intron 40.0%
ATATCATACCCCAAGTTACG+CGG + chr1_3:50963660-50963679 Msa0123640:intron 40.0%
TATCTAAACCGCGTAACTTG+GGG - chr1_3:50963671-50963690 None:intergenic 40.0%
GATATCTAAACCGCGTAACT+TGG - chr1_3:50963673-50963692 None:intergenic 40.0%
GTTACGCGGTTTAGATATCT+TGG + chr1_3:50963674-50963693 Msa0123640:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG + chr1_3:50963695-50963714 Msa0123640:intron 40.0%
GTACATCATCGTATTCAAGC+TGG + chr1_3:50963734-50963753 Msa0123640:intron 40.0%
GATGAGTGGTAAAACTAGAC+AGG + chr1_3:50963937-50963956 Msa0123640:intron 40.0%
GTGGTAAAACTAGACAGGAT+AGG + chr1_3:50963942-50963961 Msa0123640:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_3:50964068-50964087 None:intergenic 40.0%
! TTCCTCTACCTCTTTTAACC+TGG - chr1_3:50964111-50964130 None:intergenic 40.0%
AGATTTAGAGGTCAATGAGC+TGG + chr1_3:50964165-50964184 Msa0123640:intron 40.0%
CAATGAGCTGGATCCAAATA+TGG + chr1_3:50964177-50964196 Msa0123640:intron 40.0%
! GTGTTATTGATTGCAGATGG+TGG - chr1_3:50964391-50964410 None:intergenic 40.0%
! TTGCATTAATGGATGCGAGA+AGG + chr1_3:50964684-50964703 Msa0123640:CDS 40.0%
! TGCATTAATGGATGCGAGAA+GGG + chr1_3:50964685-50964704 Msa0123640:CDS 40.0%
ATTCCGGTAAAATGCTCACT+TGG + chr1_3:50964734-50964753 Msa0123640:intron 40.0%
! AAGCCAAGTGAGCATTTTAC+CGG - chr1_3:50964740-50964759 None:intergenic 40.0%
TAAGATGCACCAAACACTAC+TGG + chr1_3:50964844-50964863 Msa0123640:intron 40.0%
!! TCAATTAGAGTATCGCCTCA+TGG + chr1_3:50964910-50964929 Msa0123640:intron 40.0%
AACCAACTTAATGAGGTCAG+TGG - chr1_3:50965056-50965075 None:intergenic 40.0%
AATCCCAGTTCTGCTTAATC+AGG + chr1_3:50965078-50965097 Msa0123640:intron 40.0%
TCTCCTGATTAAGCAGAACT+GGG - chr1_3:50965084-50965103 None:intergenic 40.0%
ATCTCCTGATTAAGCAGAAC+TGG - chr1_3:50965085-50965104 None:intergenic 40.0%
TGTTGTCGGAATCAGAGTTT+AGG + chr1_3:50965179-50965198 Msa0123640:intron 40.0%
CCACTTAGTGGGATAAGAAT+TGG - chr1_3:50965266-50965285 None:intergenic 40.0%
CCAATTCTTATCCCACTAAG+TGG + chr1_3:50965263-50965282 Msa0123640:intron 40.0%
! CAATGAGTTGGATCCAAACA+TGG - chr1_3:50965334-50965353 None:intergenic 40.0%
GGAACTTGTGTGTCCAATAT+AGG + chr1_3:50965697-50965716 Msa0123640:intron 40.0%
CCAAAATCTGTAAGGACAGT+TGG - chr1_3:50965849-50965868 None:intergenic 40.0%
! CCAACTGTCCTTACAGATTT+TGG + chr1_3:50965846-50965865 Msa0123640:intron 40.0%
!!! GGGATTAAATTTTTTGGGCG+AGG + chr1_3:50965966-50965985 Msa0123640:CDS 40.0%
TTGCTTGCTTCAATAGAGTC+CGG - chr1_3:50966048-50966067 None:intergenic 40.0%
TAAATAATGCCAGGGGAAGA+GGG + chr1_3:50966163-50966182 Msa0123640:intron 40.0%
ATTCAAGATACCACTGGAAG+TGG + chr1_3:50966634-50966653 Msa0123640:intron 40.0%
AGAAACTACAGAATCAGGTG+CGG - chr1_3:50966702-50966721 None:intergenic 40.0%
!! GCTCTAGAAACTACAGAATC+AGG - chr1_3:50966707-50966726 None:intergenic 40.0%
! TCCCTTATGCTGTTTAAACC+GGG + chr1_3:50966862-50966881 Msa0123640:three_prime_UTR 40.0%
ATGGCATAACAAAACACTGC+TGG - chr1_3:50967083-50967102 None:intergenic 40.0%
TATTCTTGACCTGGTAGATG+TGG + chr1_3:50967197-50967216 Msa0123640:three_prime_UTR 40.0%
! TTTGATTTCGCGTCTTGTCG+CGG + chr1_3:50957892-50957911 Msa0123640:five_prime_UTR 45.0%
!! ATCAAAGTTGATGAGGCCGA+GGG + chr1_3:50958123-50958142 Msa0123640:five_prime_UTR 45.0%
AAATGTCTCAGTCTCACCCT+CGG - chr1_3:50958142-50958161 None:intergenic 45.0%
GCTATTGCTTCTGGTAAAGG+CGG + chr1_3:50958307-50958326 Msa0123640:five_prime_UTR 45.0%
!!! TCGGTGGACCTTTGTTTTAG+GGG - chr1_3:50958796-50958815 None:intergenic 45.0%
!!! CATCGGTGGACCTTTGTTTT+AGG - chr1_3:50958798-50958817 None:intergenic 45.0%
CTAAAACAAAGGTCCACCGA+TGG + chr1_3:50958796-50958815 Msa0123640:intron 45.0%
! CATTTGTATTGGTCCATCGG+TGG - chr1_3:50958812-50958831 None:intergenic 45.0%
TGTGAGCAACAGATTGTGGT+AGG - chr1_3:50958836-50958855 None:intergenic 45.0%
GGCAGCAAGAGATTACAATC+CGG - chr1_3:50959182-50959201 None:intergenic 45.0%
GTCACTGCAATACCATTAGC+CGG - chr1_3:50959324-50959343 None:intergenic 45.0%
TGCAGTGACATTTCATCAGG+GGG + chr1_3:50959335-50959354 Msa0123640:intron 45.0%
GGGGGGAATTCATCTATTTG+TGG + chr1_3:50959353-50959372 Msa0123640:intron 45.0%
ATACATGGGATCCCCTAGTA+TGG - chr1_3:50959608-50959627 None:intergenic 45.0%
ACAAAGCCTGAAGTCACTCA+AGG + chr1_3:50960291-50960310 Msa0123640:five_prime_UTR 45.0%
! GTACTGGTACAGGCACAATA+TGG + chr1_3:50960340-50960359 Msa0123640:intron 45.0%
!!! TGTCGGTTTTGTAGGAGTGT+TGG + chr1_3:50960519-50960538 Msa0123640:intron 45.0%
!! TGTAGGAGTGTTGGAAACTC+TGG + chr1_3:50960528-50960547 Msa0123640:intron 45.0%
GCATGAACTGCAATGGAAGA+TGG - chr1_3:50961183-50961202 None:intergenic 45.0%
ACAGCTACATGCATACCATG+GGG - chr1_3:50961325-50961344 None:intergenic 45.0%
GCTCTTGAGAAAATGACGAG+GGG + chr1_3:50961551-50961570 Msa0123640:CDS 45.0%
AAATGACGAGGGGAGTTAAC+TGG + chr1_3:50961561-50961580 Msa0123640:CDS 45.0%
AATGACGAGGGGAGTTAACT+GGG + chr1_3:50961562-50961581 Msa0123640:CDS 45.0%
CCCATAAAGAAGGTTGTGCT+AGG + chr1_3:50961841-50961860 Msa0123640:intron 45.0%
CTGTAAAGTCATACCTGGAG+AGG + chr1_3:50962061-50962080 Msa0123640:intron 45.0%
TGGATGTAAGGGTTAAGAGG+AGG + chr1_3:50962114-50962133 Msa0123640:intron 45.0%
GGATGTAAGGGTTAAGAGGA+GGG + chr1_3:50962115-50962134 Msa0123640:intron 45.0%
! AAATGCCACCACTTGATTCG+CGG - chr1_3:50962167-50962186 None:intergenic 45.0%
GGCTCATGAGATTAAGAAGG+TGG + chr1_3:50962280-50962299 Msa0123640:intron 45.0%
AAGGTGGCAAAAGAGACGTT+GGG + chr1_3:50962296-50962315 Msa0123640:intron 45.0%
!!! TCTAGAGGTTTTGGACCTAG+GGG + chr1_3:50962323-50962342 Msa0123640:intron 45.0%
GACCTAGGGGTAAAGAATCT+TGG + chr1_3:50962336-50962355 Msa0123640:intron 45.0%
CACCAAGATTCTTTACCCCT+AGG - chr1_3:50962341-50962360 None:intergenic 45.0%
CTAGGGGTAAAGAATCTTGG+TGG + chr1_3:50962339-50962358 Msa0123640:intron 45.0%
AGCTAGGAAAGAGGCTAAGA+AGG + chr1_3:50962460-50962479 Msa0123640:intron 45.0%
TAGGAAAGAGGCTAAGAAGG+CGG + chr1_3:50962463-50962482 Msa0123640:intron 45.0%
GCGAGAACTCAAGCATTTGA+AGG + chr1_3:50962494-50962513 Msa0123640:intron 45.0%
CCTCCTTGGTACCTAAAGAT+TGG - chr1_3:50962526-50962545 None:intergenic 45.0%
CCAATCTTTAGGTACCAAGG+AGG + chr1_3:50962523-50962542 Msa0123640:intron 45.0%
ATCTTTAGGTACCAAGGAGG+GGG + chr1_3:50962526-50962545 Msa0123640:intron 45.0%
TATAGATTTCTCCCCCTCCT+TGG - chr1_3:50962540-50962559 None:intergenic 45.0%
AGAACGAAAGACAAGAGACC+TGG + chr1_3:50962580-50962599 Msa0123640:intron 45.0%
AGATCTTACCCGACTCTAAC+AGG + chr1_3:50962711-50962730 Msa0123640:intron 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + chr1_3:50962815-50962834 Msa0123640:intron 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + chr1_3:50962816-50962835 Msa0123640:intron 45.0%
TGGAAAAGTCTTGGCGATAG+AGG + chr1_3:50962863-50962882 Msa0123640:intron 45.0%
TTGGCGATAGAGGAATTGTG+TGG + chr1_3:50962873-50962892 Msa0123640:intron 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - chr1_3:50963454-50963473 None:intergenic 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + chr1_3:50963482-50963501 Msa0123640:intron 45.0%
TCTACCTTGGAGGTGAAAGT+TGG + chr1_3:50963632-50963651 Msa0123640:intron 45.0%
ATCTCCAACTTTCACCTCCA+AGG - chr1_3:50963639-50963658 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr1_3:50963738-50963757 Msa0123640:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr1_3:50963747-50963766 Msa0123640:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr1_3:50963761-50963780 Msa0123640:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr1_3:50963780-50963799 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr1_3:50963847-50963866 Msa0123640:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr1_3:50963851-50963870 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr1_3:50963855-50963874 Msa0123640:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr1_3:50963856-50963875 Msa0123640:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr1_3:50963892-50963911 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + chr1_3:50963895-50963914 Msa0123640:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr1_3:50963973-50963992 Msa0123640:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr1_3:50963974-50963993 Msa0123640:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr1_3:50963975-50963994 Msa0123640:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_3:50964067-50964086 None:intergenic 45.0%
AGCCAGGTTAAAAGAGGTAG+AGG + chr1_3:50964106-50964125 Msa0123640:intron 45.0%
TCTACCACCACAATCTGTCA+TGG - chr1_3:50964273-50964292 None:intergenic 45.0%
! ACCACCATGGCCAATTTTGA+AGG + chr1_3:50964303-50964322 Msa0123640:intron 45.0%
TCCTTCAAAATTGGCCATGG+TGG - chr1_3:50964307-50964326 None:intergenic 45.0%
CCATCCTTCAAAATTGGCCA+TGG - chr1_3:50964310-50964329 None:intergenic 45.0%
!! CCATGGCCAATTTTGAAGGA+TGG + chr1_3:50964307-50964326 Msa0123640:intron 45.0%
ACGACGCCATCCTTCAAAAT+TGG - chr1_3:50964316-50964335 None:intergenic 45.0%
!! TTGATTGCAGATGGTGGACA+TGG - chr1_3:50964385-50964404 None:intergenic 45.0%
GTCATGGCTTCTTCTATGGT+AGG + chr1_3:50964632-50964651 Msa0123640:intron 45.0%
! GCATTAATGGATGCGAGAAG+GGG + chr1_3:50964686-50964705 Msa0123640:CDS 45.0%
TGCCACTGACCTCATTAAGT+TGG + chr1_3:50965051-50965070 Msa0123640:intron 45.0%
ACACCTGGTCTCAAATGTTG+TGG + chr1_3:50965608-50965627 Msa0123640:intron 45.0%
! GTTCCACAACATTTGAGACC+AGG - chr1_3:50965614-50965633 None:intergenic 45.0%
GGTCTCAAATGTTGTGGAAC+TGG + chr1_3:50965614-50965633 Msa0123640:intron 45.0%
TATGAAGGTTCGCCACAATG+TGG - chr1_3:50965904-50965923 None:intergenic 45.0%
TCATAGCACAGCCACTGAAA+TGG + chr1_3:50965945-50965964 Msa0123640:CDS 45.0%
CATAGCACAGCCACTGAAAT+GGG + chr1_3:50965946-50965965 Msa0123640:CDS 45.0%
CTAAATAATGCCAGGGGAAG+AGG + chr1_3:50966162-50966181 Msa0123640:intron 45.0%
!! TTCTCGTTTTATTGGGCTGG+TGG + chr1_3:50966358-50966377 Msa0123640:intron 45.0%
AACAGCACAACCTCTATTCC+TGG + chr1_3:50966551-50966570 Msa0123640:intron 45.0%
ATCAGGGAAGCTTGTGATCA+AGG + chr1_3:50966659-50966678 Msa0123640:CDS 45.0%
TCAGGGAAGCTTGTGATCAA+GGG + chr1_3:50966660-50966679 Msa0123640:CDS 45.0%
CCCCGGTTTAAACAGCATAA+GGG - chr1_3:50966866-50966885 None:intergenic 45.0%
! CCCTTATGCTGTTTAAACCG+GGG + chr1_3:50966863-50966882 Msa0123640:three_prime_UTR 45.0%
ACCCCGGTTTAAACAGCATA+AGG - chr1_3:50966867-50966886 None:intergenic 45.0%
TGGTTGTGTTGGATGCATTG+TGG + chr1_3:50967130-50967149 Msa0123640:three_prime_UTR 45.0%
GGTTGTGTTGGATGCATTGT+GGG + chr1_3:50967131-50967150 Msa0123640:three_prime_UTR 45.0%
!! AAAAAAAAAAAGAAAAAAAA+AGG - chr1_3:50959157-50959176 None:intergenic 5.0%
!! TAAATATTAATTAAATACAT+GGG - chr1_3:50959622-50959641 None:intergenic 5.0%
!! ATAAATATTAATTAAATACA+TGG - chr1_3:50959623-50959642 None:intergenic 5.0%
CTCAGGGGATCTTCTAATCG+TGG - chr1_3:50958092-50958111 None:intergenic 50.0%
!! CATCAAAGTTGATGAGGCCG+AGG + chr1_3:50958122-50958141 Msa0123640:five_prime_UTR 50.0%
! GCGAAGCATCTTCGCATTGA+TGG + chr1_3:50958268-50958287 Msa0123640:five_prime_UTR 50.0%
GTCGGCAAATCAACAACTGC+TGG + chr1_3:50958331-50958350 Msa0123640:five_prime_UTR 50.0%
! TTGATCTCGATGCCGGCTAA+TGG + chr1_3:50959309-50959328 Msa0123640:intron 50.0%
GCAGTGACATTTCATCAGGG+GGG + chr1_3:50959336-50959355 Msa0123640:intron 50.0%
TAGAGGCAACTGGCAGTAGT+AGG + chr1_3:50959541-50959560 Msa0123640:intron 50.0%
GTACAGGCACAATATGGGCA+TGG + chr1_3:50960346-50960365 Msa0123640:intron 50.0%
!! TAAGAGTGTCGGACATCGAC+AGG - chr1_3:50960433-50960452 None:intergenic 50.0%
ATGACGAGGGGAGTTAACTG+GGG + chr1_3:50961563-50961582 Msa0123640:CDS 50.0%
CTGGTGATAGATATGCCTCC+TGG + chr1_3:50961599-50961618 Msa0123640:CDS 50.0%
ATAGATATGCCTCCTGGCAC+TGG + chr1_3:50961605-50961624 Msa0123640:CDS 50.0%
ATTTGGACATCACCAGTGCC+AGG - chr1_3:50961620-50961639 None:intergenic 50.0%
GCAAAGAGAAGAGACCGTAG+TGG + chr1_3:50962137-50962156 Msa0123640:intron 50.0%
GCGCTAATGATATGTGGGAG+AGG + chr1_3:50962255-50962274 Msa0123640:intron 50.0%
GAAGGTGGCAAAAGAGACGT+TGG + chr1_3:50962295-50962314 Msa0123640:intron 50.0%
GAGACGTTGGGAGAATCTAG+AGG + chr1_3:50962308-50962327 Msa0123640:intron 50.0%
GGGGTAAAGAATCTTGGTGG+TGG + chr1_3:50962342-50962361 Msa0123640:intron 50.0%
! GGACGAAGAGGGTAGAGTTT+TGG + chr1_3:50962622-50962641 Msa0123640:intron 50.0%
CAGGTTAGACATCAGAGAGG+AGG + chr1_3:50962730-50962749 Msa0123640:intron 50.0%
TAGACATCAGAGAGGAGGAC+CGG + chr1_3:50962735-50962754 Msa0123640:intron 50.0%
CGAAGAAAATGCCAGACGAG+TGG + chr1_3:50962927-50962946 Msa0123640:intron 50.0%
CTACTTACTTCGACGCGTGA+TGG + chr1_3:50963144-50963163 Msa0123640:intron 50.0%
AAGCCCCCTCATACATATCC+TGG - chr1_3:50963307-50963326 None:intergenic 50.0%
AAGGACTTAGGGTTGACCCT+TGG - chr1_3:50963391-50963410 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + chr1_3:50963492-50963511 Msa0123640:intron 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + chr1_3:50963493-50963512 Msa0123640:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+TGG + chr1_3:50963545-50963564 Msa0123640:intron 50.0%
ACTCCGTCTTGCTTCTACTC+AGG - chr1_3:50963577-50963596 None:intergenic 50.0%
AAGGAGAAGTGGGTCTACCT+TGG + chr1_3:50963619-50963638 Msa0123640:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr1_3:50963842-50963861 Msa0123640:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + chr1_3:50963903-50963922 Msa0123640:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr1_3:50963923-50963942 Msa0123640:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr1_3:50963976-50963995 Msa0123640:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr1_3:50963981-50964000 None:intergenic 50.0%
AGATCAAATGGAGGAGAGCC+AGG + chr1_3:50964090-50964109 Msa0123640:intron 50.0%
GAGGAGAGCCAGGTTAAAAG+AGG + chr1_3:50964100-50964119 Msa0123640:intron 50.0%
AGCCGACCCCACTTAGATAT+CGG + chr1_3:50964237-50964256 Msa0123640:intron 50.0%
TGCCGATATCTAAGTGGGGT+CGG - chr1_3:50964242-50964261 None:intergenic 50.0%
ACCCCACTTAGATATCGGCA+TGG + chr1_3:50964242-50964261 Msa0123640:intron 50.0%
GCCATGCCGATATCTAAGTG+GGG - chr1_3:50964246-50964265 None:intergenic 50.0%
CGCCATGCCGATATCTAAGT+GGG - chr1_3:50964247-50964266 None:intergenic 50.0%
CCACTTAGATATCGGCATGG+CGG + chr1_3:50964245-50964264 Msa0123640:intron 50.0%
TTTGAAGGATGGCGTCGTCA+TGG + chr1_3:50964318-50964337 Msa0123640:intron 50.0%
!! ATTGCAGATGGTGGACATGG+TGG - chr1_3:50964382-50964401 None:intergenic 50.0%
!! AGAGTATCGCCTCATGGTCA+TGG + chr1_3:50964916-50964935 Msa0123640:intron 50.0%
! GAGTATCGCCTCATGGTCAT+GGG + chr1_3:50964917-50964936 Msa0123640:intron 50.0%
AGTATCGCCTCATGGTCATG+GGG + chr1_3:50964918-50964937 Msa0123640:intron 50.0%
GATGAATCCCCATGACCATG+AGG - chr1_3:50964928-50964947 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_3:50965269-50965288 Msa0123640:intron 50.0%
GTTCCACAGCATTTGCGACT+GGG - chr1_3:50965441-50965460 None:intergenic 50.0%
AGTTCCACAGCATTTGCGAC+TGG - chr1_3:50965442-50965461 None:intergenic 50.0%
TACCACTGGAAGTGGAGATC+AGG + chr1_3:50966642-50966661 Msa0123640:CDS 50.0%
ACCACTGGAAGTGGAGATCA+GGG + chr1_3:50966643-50966662 Msa0123640:CDS 50.0%
! CAGGGACTGGAGTGTTATGA+CGG - chr1_3:50966817-50966836 None:intergenic 50.0%
TCATAACACTCCAGTCCCTG+AGG + chr1_3:50966817-50966836 Msa0123640:three_prime_UTR 50.0%
! CTCTTTTCTTCCTCAGGGAC+TGG - chr1_3:50966830-50966849 None:intergenic 50.0%
CAGTCCCTGAGGAAGAAAAG+AGG + chr1_3:50966828-50966847 Msa0123640:three_prime_UTR 50.0%
! CGGTCCTCTTTTCTTCCTCA+GGG - chr1_3:50966835-50966854 None:intergenic 50.0%
! TCGGTCCTCTTTTCTTCCTC+AGG - chr1_3:50966836-50966855 None:intergenic 50.0%
ACAGCATAAGGGAACCAGCT+CGG - chr1_3:50966855-50966874 None:intergenic 50.0%
GTGGTTCTTCGACGTCACAT+AGG + chr1_3:50966998-50967017 Msa0123640:three_prime_UTR 50.0%
GTGTTGGATGCATTGTGGGA+AGG + chr1_3:50967135-50967154 Msa0123640:three_prime_UTR 50.0%
GCTTCTGGTAAAGGCGGTGT+CGG + chr1_3:50958313-50958332 Msa0123640:five_prime_UTR 55.0%
TGTCGGACATCGACAGGTGT+TGG - chr1_3:50960427-50960446 None:intergenic 55.0%
! TCGGGGCATTCTTCTCCACA+AGG - chr1_3:50961289-50961308 None:intergenic 55.0%
AGAAGAATGCCCCGATCGTC+TGG + chr1_3:50961294-50961313 Msa0123640:CDS 55.0%
TGACGAGGGGAGTTAACTGG+GGG + chr1_3:50961564-50961583 Msa0123640:CDS 55.0%
CTGGGGGAACCTTGACATTC+TGG + chr1_3:50961580-50961599 Msa0123640:CDS 55.0%
!! CTTTTTGGGGGATCGCCTGT+TGG + chr1_3:50961713-50961732 Msa0123640:intron 55.0%
TGGGTAGTTAAGCCCTCTCC+AGG - chr1_3:50962077-50962096 None:intergenic 55.0%
TGATTCGCGGAACGCCACTA+CGG - chr1_3:50962154-50962173 None:intergenic 55.0%
GGAGGTTTCAGGCAACCACA+TGG + chr1_3:50962230-50962249 Msa0123640:intron 55.0%
TAATGGCAAGGCAGTTGGGC+CGG + chr1_3:50962820-50962839 Msa0123640:intron 55.0%
GTGCTTCTTCTCCACTCGTC+TGG - chr1_3:50962941-50962960 None:intergenic 55.0%
TATGCCTGGGAGGTCGACTA+TGG + chr1_3:50963114-50963133 Msa0123640:intron 55.0%
CCTCACCCCTTTCTTCTCCA+AGG - chr1_3:50963264-50963283 None:intergenic 55.0%
CCTTGGAGAAGAAAGGGGTG+AGG + chr1_3:50963261-50963280 Msa0123640:intron 55.0%
TTCGACTAGTGTGAGGACGC+AGG + chr1_3:50963325-50963344 Msa0123640:intron 55.0%
ACTAGTGTGAGGACGCAGGA+TGG + chr1_3:50963329-50963348 Msa0123640:intron 55.0%
CTAGTGTGAGGACGCAGGAT+GGG + chr1_3:50963330-50963349 Msa0123640:intron 55.0%
TAGTGTGAGGACGCAGGATG+GGG + chr1_3:50963331-50963350 Msa0123640:intron 55.0%
GAGTCGAGGGAGGAGTTAAG+CGG + chr1_3:50963506-50963525 Msa0123640:intron 55.0%
AGTCGAGGGAGGAGTTAAGC+GGG + chr1_3:50963507-50963526 Msa0123640:intron 55.0%
TAAGCGGGAGGCTAGAGACT+TGG + chr1_3:50963522-50963541 Msa0123640:intron 55.0%
GCGGAAGCCATACGCTTCTA+AGG - chr1_3:50963555-50963574 None:intergenic 55.0%
CCGTCTTGCTTCTACTCAGG+CGG - chr1_3:50963574-50963593 None:intergenic 55.0%
CCGCCTGAGTAGAAGCAAGA+CGG + chr1_3:50963571-50963590 Msa0123640:intron 55.0%
GAGAAGTGGGTCTACCTTGG+AGG + chr1_3:50963622-50963641 Msa0123640:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr1_3:50963829-50963848 Msa0123640:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr1_3:50963859-50963878 Msa0123640:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr1_3:50963915-50963934 Msa0123640:intron 55.0%
TCTAAGTGGGGTCGGCTACA+TGG - chr1_3:50964234-50964253 None:intergenic 55.0%
CCGCCATGCCGATATCTAAG+TGG - chr1_3:50964248-50964267 None:intergenic 55.0%
! GGTGCCATGACAGATTGTGG+TGG + chr1_3:50964266-50964285 Msa0123640:intron 55.0%
! GGCGTCGTCATGGCGTTTTA+TGG + chr1_3:50964328-50964347 Msa0123640:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_3:50965277-50965296 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_3:50964233-50964252 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_3:50965277-50965296 Msa0123640:intron 55.0%
ACACCCAGTCGCAAATGCTG+TGG + chr1_3:50965435-50965454 Msa0123640:intron 55.0%
GACATTGTACCCTCTTCCCC+TGG - chr1_3:50966175-50966194 None:intergenic 55.0%
TCCCTGATCTCCACTTCCAG+TGG - chr1_3:50966647-50966666 None:intergenic 55.0%
!! TCAAGGGCACCCGATAGTGT+TGG + chr1_3:50966676-50966695 Msa0123640:CDS 55.0%
TCAGGTGCGGCCAACACTAT+CGG - chr1_3:50966689-50966708 None:intergenic 55.0%
GGAAGAAAAGAGGACCGAGC+TGG + chr1_3:50966838-50966857 Msa0123640:three_prime_UTR 55.0%
AATGCCCCGATCGTCTGGAG+AGG + chr1_3:50961299-50961318 Msa0123640:CDS 60.0%
ATGGGGCCTCTCCAGACGAT+CGG - chr1_3:50961308-50961327 None:intergenic 60.0%
TGGACATCACCAGTGCCAGG+AGG - chr1_3:50961617-50961636 None:intergenic 60.0%
GTGGCGTTCCGCGAATCAAG+TGG + chr1_3:50962156-50962175 Msa0123640:intron 60.0%
GCGTTCCGCGAATCAAGTGG+TGG + chr1_3:50962159-50962178 Msa0123640:intron 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + chr1_3:50962772-50962791 Msa0123640:intron 60.0%
GCTTCCATAGTCGACCTCCC+AGG - chr1_3:50963121-50963140 None:intergenic 60.0%
AGGGGGCTTCGACTAGTGTG+AGG + chr1_3:50963318-50963337 Msa0123640:intron 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + chr1_3:50963496-50963515 Msa0123640:intron 60.0%
!! GGCGGTGCCATGACAGATTG+TGG + chr1_3:50964263-50964282 Msa0123640:intron 60.0%
CAGGTGCGGCCAACACTATC+GGG - chr1_3:50966688-50966707 None:intergenic 60.0%
TGGGGCCTCTCCAGACGATC+GGG - chr1_3:50961307-50961326 None:intergenic 65.0%
GATCGTCTGGAGAGGCCCCA+TGG + chr1_3:50961307-50961326 Msa0123640:CDS 65.0%
CGAGGGAGGAGTTAAGCGGG+AGG + chr1_3:50963510-50963529 Msa0123640:intron 65.0%
GCGGGAGGCTAGAGACTTGG+AGG + chr1_3:50963525-50963544 Msa0123640:intron 65.0%
GGGGCCTCTCCAGACGATCG+GGG - chr1_3:50961306-50961325 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50957869 50967220 50957869 ID=Msa0123640;Name=Msa0123640
chr1_3 mRNA 50957869 50967220 50957869 ID=Msa0123640-mRNA-1;Parent=Msa0123640;Name=Msa0123640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=551|1|1|1|0.85|0.87|8|421|195
chr1_3 exon 50957869 50958144 50957869 ID=Msa0123640-mRNA-1:exon:15538;Parent=Msa0123640-mRNA-1
chr1_3 exon 50958244 50958352 50958244 ID=Msa0123640-mRNA-1:exon:15539;Parent=Msa0123640-mRNA-1
chr1_3 exon 50960190 50960312 50960190 ID=Msa0123640-mRNA-1:exon:15540;Parent=Msa0123640-mRNA-1
chr1_3 exon 50961196 50961328 50961196 ID=Msa0123640-mRNA-1:exon:15541;Parent=Msa0123640-mRNA-1
chr1_3 exon 50961542 50961668 50961542 ID=Msa0123640-mRNA-1:exon:15542;Parent=Msa0123640-mRNA-1
chr1_3 exon 50964654 50964739 50964654 ID=Msa0123640-mRNA-1:exon:15543;Parent=Msa0123640-mRNA-1
chr1_3 exon 50965862 50965987 50965862 ID=Msa0123640-mRNA-1:exon:15544;Parent=Msa0123640-mRNA-1
chr1_3 exon 50966641 50967220 50966641 ID=Msa0123640-mRNA-1:exon:15545;Parent=Msa0123640-mRNA-1
chr1_3 five_prime_UTR 50957869 50958144 50957869 ID=Msa0123640-mRNA-1:five_prime_utr;Parent=Msa0123640-mRNA-1
chr1_3 five_prime_UTR 50958244 50958352 50958244 ID=Msa0123640-mRNA-1:five_prime_utr;Parent=Msa0123640-mRNA-1
chr1_3 five_prime_UTR 50960190 50960312 50960190 ID=Msa0123640-mRNA-1:five_prime_utr;Parent=Msa0123640-mRNA-1
chr1_3 five_prime_UTR 50961196 50961238 50961196 ID=Msa0123640-mRNA-1:five_prime_utr;Parent=Msa0123640-mRNA-1
chr1_3 CDS 50961239 50961328 50961239 ID=Msa0123640-mRNA-1:cds;Parent=Msa0123640-mRNA-1
chr1_3 CDS 50961542 50961668 50961542 ID=Msa0123640-mRNA-1:cds;Parent=Msa0123640-mRNA-1
chr1_3 CDS 50964654 50964739 50964654 ID=Msa0123640-mRNA-1:cds;Parent=Msa0123640-mRNA-1
chr1_3 CDS 50965862 50965987 50965862 ID=Msa0123640-mRNA-1:cds;Parent=Msa0123640-mRNA-1
chr1_3 CDS 50966641 50966799 50966641 ID=Msa0123640-mRNA-1:cds;Parent=Msa0123640-mRNA-1
chr1_3 three_prime_UTR 50966800 50967220 50966800 ID=Msa0123640-mRNA-1:three_prime_utr;Parent=Msa0123640-mRNA-1
Gene Sequence

>Msa0123640

ATGATTCCCATTGATAGTTACGGGATCAAGTGTATGTCAATAGGGTTCCTTGTGGAGAAGAATGCCCCGATCGTCTGGAGAGGCCCCATGGTATCAAAAGCTCTTGAGAAAATGACGAGGGGAGTTAACTGGGGGAACCTTGACATTCTGGTGATAGATATGCCTCCTGGCACTGGTGATGTCCAAATATCTATGTCTCAGAATCTGCAACTATCAGGTGCGCTGATTGTTTCAACTCCTCAAGATGTTGCATTAATGGATGCGAGAAGGGGAGTACAAATGTTCAATAAAGTTGATATTCCGATTTTGGGAATCATAGAGAATATGAGCTGCTTTAAATGTCCACATTGTGGCGAACCTTCATATATATTTGGTAAAGGAGGGGCTCATAGCACAGCCACTGAAATGGGATTAAATTTTTTGGGCGAGATACCACTGGAAGTGGAGATCAGGGAAGCTTGTGATCAAGGGCACCCGATAGTGTTGGCCGCACCTGATTCTGTAGTTTCTAGAGCATATGGAAATATAGCTGAAAAGGTTGTTCAGAAACTCAAGGAGAAACAATTTCAACCAGAGATTTTACTATGA
Protein sequence

>Msa0123640

MIPIDSYGIKCMSIGFLVEKNAPIVWRGPMVSKALEKMTRGVNWGNLDILVIDMPPGTGDVQISMSQNLQLSGALIVSTPQDVALMDARRGVQMFNKVDIPILGIIENMSCFKCPHCGEPSYIFGKGGAHSTATEMGLNFLGEIPLEVEIREACDQGHPIVLAAPDSVVSRAYGNIAEKVVQKLKEKQFQPEILL*