AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070650 MtrunA17_Chr1g0176041 95.635 252 9 1 1 250 1 252 2.71e-174 496
Msa0070650 MtrunA17_Chr3g0121351 57.088 261 75 7 8 250 3 244 2.39e-72 234
Msa0070650 MtrunA17_Chr4g0063551 45.565 248 114 7 8 245 3 239 1.30e-51 180
Msa0070650 MtrunA17_Chr3g0107851 37.313 134 75 2 136 269 101 225 2.66e-21 94.4
Msa0070650 MtrunA17_Chr6g0461751 46.667 105 53 1 146 250 134 235 3.52e-19 88.2
Msa0070650 MtrunA17_Chr4g0058591 33.793 145 85 4 108 248 156 293 5.77e-19 87.4
Msa0070650 MtrunA17_Chr7g0270131 35.664 143 76 4 114 245 183 320 8.15e-19 87.0
Msa0070650 MtrunA17_Chr2g0330401 35.455 110 66 1 139 248 83 187 1.30e-17 83.2
Msa0070650 MtrunA17_Chr2g0277821 35.714 112 67 1 137 248 489 595 1.85e-16 80.5
Msa0070650 MtrunA17_Chr4g0076491 31.724 145 87 4 111 248 242 381 2.08e-16 80.1
Msa0070650 MtrunA17_Chr6g0449741 32.479 117 71 2 135 248 232 343 6.58e-16 78.6
Msa0070650 MtrunA17_Chr6g0449911 33.636 110 67 1 139 248 152 255 2.19e-15 77.0
Msa0070650 MtrunA17_Chr1g0200181 36.792 106 65 2 139 244 132 235 4.18e-15 75.9
Msa0070650 MtrunA17_Chr2g0293631 37.273 110 63 2 139 248 483 586 7.62e-15 75.5
Msa0070650 MtrunA17_Chr1g0157691 34.906 106 67 1 139 244 134 237 1.85e-14 73.9
Msa0070650 MtrunA17_Chr5g0409981 37.302 126 66 5 128 247 77 195 1.17e-13 71.6
Msa0070650 MtrunA17_Chr3g0098121 41.237 97 50 2 151 247 151 240 4.29e-13 70.1
Msa0070650 MtrunA17_Chr2g0300291 40.816 98 49 2 151 247 140 229 9.51e-13 68.9
Msa0070650 MtrunA17_Chr1g0193491 35.606 132 76 4 121 250 87 211 1.14e-12 68.6
Msa0070650 MtrunA17_Chr4g0039471 36.697 109 60 3 152 260 2 101 1.75e-12 67.8
Msa0070650 MtrunA17_Chr1g0192021 32.773 119 72 3 140 255 11 124 2.15e-12 67.8
Msa0070650 MtrunA17_Chr0c30g0494091 37.838 111 59 1 137 247 67 167 3.18e-12 66.6
Msa0070650 MtrunA17_Chr4g0074521 37.838 111 59 1 137 247 67 167 3.76e-12 66.6
Msa0070650 MtrunA17_Chr8g0349951 35.514 107 57 3 150 256 8 102 1.19e-11 62.0
Msa0070650 MtrunA17_Chr7g0236841 36.735 98 54 2 150 247 8 97 1.66e-11 64.7
Msa0070650 MtrunA17_Chr6g0483491 36.735 98 54 2 150 247 8 97 2.09e-11 64.3
Msa0070650 MtrunA17_Chr8g0386451 40.909 88 48 2 171 257 307 391 2.44e-11 64.7
Msa0070650 MtrunA17_Chr5g0443991 38.554 83 45 1 163 245 87 163 4.34e-11 63.9
Msa0070650 MtrunA17_Chr4g0040761 41.304 92 46 2 153 244 20 103 5.49e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070650 AT2G42520.2 57.895 266 81 7 7 250 2 258 2.46e-84 266
Msa0070650 AT2G42520.1 57.895 266 81 7 7 250 2 258 2.46e-84 266
Msa0070650 AT2G42520.3 57.895 266 81 7 7 250 2 258 2.46e-84 266
Msa0070650 AT3G58510.1 57.795 263 78 8 7 250 2 250 2.82e-78 250
Msa0070650 AT3G58510.3 57.795 263 78 8 7 250 2 250 2.82e-78 250
Msa0070650 AT3G58510.2 57.795 263 78 8 7 250 2 250 2.82e-78 250
Msa0070650 AT3G58570.1 55.731 253 97 5 5 250 1 245 3.81e-73 238
Msa0070650 AT2G47330.1 40.000 125 66 2 121 245 202 317 1.57e-19 89.7
Msa0070650 AT3G02065.3 46.087 115 60 2 136 250 95 207 1.63e-19 89.4
Msa0070650 AT3G02065.2 46.087 115 60 2 136 250 95 207 1.63e-19 89.4
Msa0070650 AT1G55150.1 32.727 110 69 1 139 248 87 191 9.19e-18 84.0
Msa0070650 AT1G55150.2 32.727 110 69 1 139 248 112 216 1.09e-17 84.0
Msa0070650 AT5G63120.2 36.522 115 66 2 136 250 152 259 1.54e-17 83.6
Msa0070650 AT5G63120.1 36.522 115 66 2 136 250 152 259 1.60e-17 83.2
Msa0070650 AT5G63120.3 36.522 115 66 2 136 250 152 259 1.75e-17 83.2
Msa0070650 AT5G63120.4 36.522 115 66 2 136 250 152 259 1.75e-17 83.2
Msa0070650 AT5G63120.5 36.522 115 66 2 136 250 152 259 1.75e-17 83.2
Msa0070650 AT3G09720.2 33.529 170 93 5 87 250 76 231 3.07e-17 82.8
Msa0070650 AT3G09720.1 33.529 170 93 5 87 250 76 231 3.07e-17 82.8
Msa0070650 AT2G33730.1 35.965 114 71 1 135 248 297 408 1.25e-16 80.9
Msa0070650 AT1G20920.2 33.628 113 70 1 136 248 176 283 2.47e-16 80.1
Msa0070650 AT5G60990.1 40.000 100 58 1 150 247 8 107 6.79e-16 78.6
Msa0070650 AT4G16630.1 35.461 141 82 3 109 247 123 256 7.47e-16 79.0
Msa0070650 AT4G33370.1 34.862 109 69 1 139 247 85 191 7.98e-16 78.6
Msa0070650 AT3G09620.1 33.628 113 70 1 136 248 381 488 1.74e-15 77.8
Msa0070650 AT3G09620.2 33.628 113 70 1 136 248 382 489 1.74e-15 77.8
Msa0070650 AT1G20920.4 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT1G20920.6 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT1G20920.3 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT1G20920.7 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT1G20920.5 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT1G20920.1 33.628 113 70 1 136 248 514 621 2.83e-15 77.0
Msa0070650 AT5G51280.1 36.538 104 64 1 141 244 136 237 7.20e-15 75.5
Msa0070650 AT5G54910.1 42.105 95 49 1 150 244 70 158 1.15e-14 75.1
Msa0070650 AT3G01540.4 37.273 110 63 2 139 248 146 249 2.77e-14 73.9
Msa0070650 AT3G01540.2 37.273 110 63 2 139 248 146 249 2.77e-14 73.9
Msa0070650 AT3G01540.3 37.273 110 63 2 139 248 146 249 2.77e-14 73.9
Msa0070650 AT3G01540.1 37.273 110 63 2 139 248 146 249 2.79e-14 73.9
Msa0070650 AT5G14610.2 35.514 107 63 2 139 245 149 249 3.03e-13 70.9
Msa0070650 AT5G14610.6 35.514 107 63 2 139 245 149 249 3.14e-13 70.9
Msa0070650 AT5G14610.5 35.514 107 63 2 139 245 157 257 3.16e-13 70.9
Msa0070650 AT5G14610.4 35.514 107 63 2 139 245 157 257 6.63e-13 69.7
Msa0070650 AT1G31970.1 38.835 103 50 4 150 247 115 209 6.76e-13 69.7
Msa0070650 AT3G06480.1 37.273 110 63 2 139 248 423 526 8.59e-13 69.7
Msa0070650 AT1G16280.1 41.573 89 39 2 166 251 70 148 1.07e-12 68.9
Msa0070650 AT3G06480.2 37.273 110 63 2 139 248 423 526 1.41e-12 68.9
Msa0070650 AT1G77030.1 42.391 92 45 2 153 244 30 113 2.08e-12 68.6
Msa0070650 AT4G00660.1 37.500 96 50 1 151 246 131 216 5.70e-12 66.6
Msa0070650 AT4G00660.2 37.500 96 50 1 151 246 131 216 5.70e-12 66.6
Msa0070650 AT2G40700.1 38.947 95 53 2 152 245 31 121 1.08e-11 65.9
Msa0070650 AT4G34910.1 34.286 105 65 1 151 255 46 146 9.26e-11 63.2

Find 118 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGGGTTTGGGTAATAAT+TGG 0.216352 1_2:-41290946 Msa0070650:CDS
TCCGGCCGAGCCACCTTCTT+TGG 0.231327 1_2:-41290978 Msa0070650:CDS
ACGTTTGCGGAAATAGATTT+AGG 0.245357 1_2:-41290653 Msa0070650:CDS
CTTCTTTGGTGGCTAATGAT+AGG 0.307197 1_2:-41290964 Msa0070650:CDS
GGAGGATACGGTGGTGGTGG+TGG 0.324429 1_2:-41290872 Msa0070650:CDS
TAGGGGTTTGGGTAATAATT+GGG 0.327406 1_2:-41290945 Msa0070650:CDS
GCTATACCGATTTCGCTTGC+TGG 0.327789 1_2:-41290566 Msa0070650:CDS
GGTGGCTAATGATAGGGGTT+TGG 0.328176 1_2:-41290957 Msa0070650:CDS
GGAACATAAGCCGGCTTGAC+TGG 0.329541 1_2:+41291031 None:intergenic
GCTTGCTGGGAGAGATTTGA+TGG 0.333161 1_2:-41290552 Msa0070650:CDS
CGATTATAAGCGGAATCCTT+AGG 0.336460 1_2:-41290484 Msa0070650:CDS
CTTACTCACCATGGCGAGTT+GGG 0.337802 1_2:+41285372 None:intergenic
GCTTGTGCTCAGACGGGTTC+AGG 0.340784 1_2:-41290530 Msa0070650:CDS
TTCTTTGGTGGCTAATGATA+GGG 0.344987 1_2:-41290963 Msa0070650:CDS
GGGGAATGGGAGGGAGCGTG+TGG 0.349109 1_2:-41290819 Msa0070650:CDS
GAGGAGGAGCGGGGAATGGG+AGG 0.354579 1_2:-41290829 Msa0070650:CDS
AATGGGAGGGAGCGTGTGGG+TGG 0.354702 1_2:-41290815 Msa0070650:CDS
GTGGCTAATGATAGGGGTTT+GGG 0.364803 1_2:-41290956 Msa0070650:CDS
GGTGGTGGTGGTGGCTTTGG+TGG 0.377367 1_2:-41290860 Msa0070650:CDS
GGCGAGCTAGAAGGTCGAAC+AGG 0.387202 1_2:-41285409 Msa0070650:CDS
GTGGTGGTGGTGGCTTTGGT+GGG 0.394661 1_2:-41290859 Msa0070650:CDS
CTAAGGATTCCGCTTATAAT+CGG 0.410751 1_2:+41290485 None:intergenic
TCTCTCCCAGCAAGCGAAAT+CGG 0.417914 1_2:+41290560 None:intergenic
GGGAGGGAGCGTGTGGGTGG+AGG 0.429438 1_2:-41290812 Msa0070650:CDS
GGGTTTAACAGAGGAGGAGC+GGG 0.430268 1_2:-41290839 Msa0070650:CDS
CACTTATCCTATCCCCTACT+CGG 0.431850 1_2:-41290412 Msa0070650:CDS
ATAGGTTTCTAATGATCCTA+AGG 0.433858 1_2:-41285539 Msa0070650:intron
ACAGAGGAGGAGCGGGGAAT+GGG 0.437491 1_2:-41290832 Msa0070650:CDS
TACTCGGGAGCTCTCTTGTC+AGG 0.438746 1_2:-41290396 Msa0070650:intron
ACCAAAGAAGGTGGCTCGGC+CGG 0.440213 1_2:+41290977 None:intergenic
GGATACGGTGGTGGTGGTGG+TGG 0.448116 1_2:-41290869 Msa0070650:CDS
GGCCGCGCGCCCAGTCAAGC+CGG 0.452642 1_2:-41291041 Msa0070650:CDS
GCGTGTGGGTGGAGGAAGAC+GGG 0.453713 1_2:-41290804 Msa0070650:CDS
TTGTTCGCCTCAGGTCGTTT+CGG 0.455914 1_2:-41285287 Msa0070650:intron
ACTTGGTGATGCTTGGTTTG+AGG 0.456492 1_2:-41285506 Msa0070650:CDS
GGTGGAGGATACGGTGGTGG+TGG 0.456825 1_2:-41290875 Msa0070650:CDS
TAATGATCCTAAGGGTCATA+TGG 0.457112 1_2:-41285530 Msa0070650:CDS
GTATTCTCTTGCTCAGTAAA+CGG 0.462472 1_2:+41290749 None:intergenic
GGCCGAGCCACCTTCTTTGG+TGG 0.465097 1_2:-41290975 Msa0070650:CDS
GACAAGAGAGCTCCCGAGTA+GGG 0.467329 1_2:+41290399 None:intergenic
GTTTACTGAGCAAGAGAATA+CGG 0.468139 1_2:-41290747 Msa0070650:CDS
GATTATAAGCGGAATCCTTA+GGG 0.468514 1_2:-41290483 Msa0070650:CDS
AACAGAGGAGGAGCGGGGAA+TGG 0.469033 1_2:-41290833 Msa0070650:CDS
ATATGGCACTTGGTGATGCT+TGG 0.470274 1_2:-41285513 Msa0070650:CDS
TTTGGGGCTGGGAGACAAGT+AGG 0.470337 1_2:-41290896 Msa0070650:CDS
GCCTCCCGTGAATACGTTTG+CGG 0.476065 1_2:-41290666 Msa0070650:CDS
TAACCGATCAATGGCTGCTC+CGG 0.476102 1_2:-41290996 Msa0070650:CDS
TTTGATGGCTTGTGCTCAGA+CGG 0.484435 1_2:-41290537 Msa0070650:CDS
CAACTTTGAGAACAGCTACA+TGG 0.493651 1_2:-41291099 Msa0070650:CDS
CTATACCGATTTCGCTTGCT+GGG 0.497481 1_2:-41290565 Msa0070650:CDS
TGCTCGCAAGGCGAGCTAGA+AGG 0.497893 1_2:-41285418 Msa0070650:CDS
AGGAGGAGCGGGGAATGGGA+GGG 0.498506 1_2:-41290828 Msa0070650:CDS
CAATGCAGCTAATGCTTCAT+CGG 0.504871 1_2:-41291062 Msa0070650:CDS
CCAAGTGCCATATGACCCTT+AGG 0.509679 1_2:+41285523 None:intergenic
TCATCAACATCATTCTCAAA+CGG 0.513975 1_2:+41290773 None:intergenic
CTATCATTAGCCACCAAAGA+AGG 0.514585 1_2:+41290965 None:intergenic
TCATCTTCGTAACCGATCAA+TGG 0.515937 1_2:-41291005 Msa0070650:CDS
TTACTCACCATGGCGAGTTG+GGG 0.517810 1_2:+41285373 None:intergenic
GGTATAGCATACCTCTGAAC+CGG 0.519441 1_2:+41290581 None:intergenic
TTCTCCCCACTCGTCTCCAC+AGG 0.523767 1_2:+41290695 None:intergenic
AGACAAGTAGGTGGAGGATA+CGG 0.524332 1_2:-41290884 Msa0070650:CDS
GAACATAAGCCGGCTTGACT+GGG 0.524981 1_2:+41291032 None:intergenic
TTTACTGAGCAAGAGAATAC+GGG 0.527137 1_2:-41290746 Msa0070650:CDS
AGCCGGCTTGACTGGGCGCG+CGG 0.527297 1_2:+41291039 None:intergenic
AGAGCTCCCGAGTAGGGGAT+AGG 0.529713 1_2:+41290405 None:intergenic
CGGCCGGAGCAGCCATTGAT+CGG 0.531645 1_2:+41290993 None:intergenic
CCTAAGGGTCATATGGCACT+TGG 0.539604 1_2:-41285523 Msa0070650:CDS
AGCGTGTGGGTGGAGGAAGA+CGG 0.544917 1_2:-41290805 Msa0070650:CDS
AGGGGTTTGGGTAATAATTG+GGG 0.545276 1_2:-41290944 Msa0070650:CDS
TTGATGGCTTGTGCTCAGAC+GGG 0.545968 1_2:-41290536 Msa0070650:CDS
TATTTCCGCAAACGTATTCA+CGG 0.546694 1_2:+41290661 None:intergenic
TCTTTGGTGGCTAATGATAG+GGG 0.550688 1_2:-41290962 Msa0070650:CDS
GAGCTAGAAGGTCGAACAGG+GGG 0.552505 1_2:-41285406 Msa0070650:CDS
GCGAGCTAGAAGGTCGAACA+GGG 0.554659 1_2:-41285408 Msa0070650:CDS
GGCTTTGGTGGGTTTAACAG+AGG 0.554691 1_2:-41290848 Msa0070650:CDS
TCTTACTCACCATGGCGAGT+TGG 0.559277 1_2:+41285371 None:intergenic
TAGGTTTCTAATGATCCTAA+GGG 0.560913 1_2:-41285538 Msa0070650:CDS
CTCAAAGACCACGTGTGGCA+CGG 0.564315 1_2:-41290451 Msa0070650:CDS
ATATTCCTGTGGAGACGAGT+GGG 0.566423 1_2:-41290700 Msa0070650:CDS
AGATGAGGAGGAACATAAGC+CGG 0.566852 1_2:+41291022 None:intergenic
AACTTTGAGAACAGCTACAT+GGG 0.566954 1_2:-41291098 Msa0070650:CDS
CGGCGAGTAAACTGCTCGCA+AGG 0.567760 1_2:-41285430 Msa0070650:CDS
AGCCACCAAAGAAGGTGGCT+CGG 0.568542 1_2:+41290973 None:intergenic
TCGTTTCGGCATTTCGCGAG+CGG 0.573510 1_2:-41285273 Msa0070650:CDS
TTTGAGCATACTGCTCCCTA+AGG 0.575748 1_2:+41290468 None:intergenic
GTAGGTGGAGGATACGGTGG+TGG 0.578316 1_2:-41290878 Msa0070650:CDS
TGAAACCGACACCGGTTCAG+AGG 0.581133 1_2:-41290592 Msa0070650:CDS
ATTTCCGCAAACGTATTCAC+GGG 0.581521 1_2:+41290662 None:intergenic
TTTGGTGGGTTTAACAGAGG+AGG 0.585863 1_2:-41290845 Msa0070650:CDS
GGGAATGGGAGGGAGCGTGT+GGG 0.587644 1_2:-41290818 Msa0070650:CDS
TGGGTTTAACAGAGGAGGAG+CGG 0.599864 1_2:-41290840 Msa0070650:CDS
GCAAACGTATTCACGGGAGG+CGG 0.604661 1_2:+41290668 None:intergenic
TGACAAGAGAGCTCCCGAGT+AGG 0.609561 1_2:+41290398 None:intergenic
TACTCACCATGGCGAGTTGG+GGG 0.613906 1_2:+41285374 None:intergenic
ACAAGAGAGCTCCCGAGTAG+GGG 0.617221 1_2:+41290400 None:intergenic
GGGGATAGGATAAGTGCGAG+AGG 0.619384 1_2:+41290419 None:intergenic
GCTGGGAGACAAGTAGGTGG+AGG 0.620887 1_2:-41290890 Msa0070650:CDS
GCATACCTCTGAACCGGTGT+CGG 0.624694 1_2:+41290587 None:intergenic
GAATCGTTGATTAAGAAGCG+TGG 0.631655 1_2:-41291182 Msa0070650:five_prime_UTR
TGTGGGTGGAGGAAGACGGG+AGG 0.633411 1_2:-41290801 Msa0070650:CDS
ATTGATCGGTTACGAAGATG+AGG 0.637149 1_2:+41291007 None:intergenic
TCCGCAAACGTATTCACGGG+AGG 0.641164 1_2:+41290665 None:intergenic
TCATTAGCCACCAAAGAAGG+TGG 0.641664 1_2:+41290968 None:intergenic
TGCTTATGATGATATTCCTG+TGG 0.648043 1_2:-41290711 Msa0070650:CDS
CGAGCTAGAAGGTCGAACAG+GGG 0.651304 1_2:-41285407 Msa0070650:CDS
GGTTTAACAGAGGAGGAGCG+GGG 0.655998 1_2:-41290838 Msa0070650:CDS
TAAGCAGTCCGTGCCACACG+TGG 0.659665 1_2:+41290443 None:intergenic
ACTTATCCTATCCCCTACTC+GGG 0.663829 1_2:-41290411 Msa0070650:CDS
GATATTCCTGTGGAGACGAG+TGG 0.666031 1_2:-41290701 Msa0070650:CDS
GTATGCTCAAAGACCACGTG+TGG 0.668416 1_2:-41290456 Msa0070650:CDS
GGGGCTGGGAGACAAGTAGG+TGG 0.673887 1_2:-41290893 Msa0070650:CDS
AGCTAGAAGGTCGAACAGGG+GGG 0.675247 1_2:-41285405 Msa0070650:CDS
GATCGGTTACGAAGATGAGG+AGG 0.675869 1_2:+41291010 None:intergenic
TGGACTGTCACAGCTCGTCA+CGG 0.676568 1_2:-41285450 Msa0070650:CDS
TAAGTATGTGAAACCGACAC+CGG 0.684063 1_2:-41290600 Msa0070650:CDS
CAAGTAGGTGGAGGATACGG+TGG 0.693155 1_2:-41290881 Msa0070650:CDS
TATTCCTGTGGAGACGAGTG+GGG 0.710004 1_2:-41290699 Msa0070650:CDS
TTACTGAGCAAGAGAATACG+GGG 0.714021 1_2:-41290745 Msa0070650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAATAAAAAATT+AGG + chr1_2:41285474-41285493 None:intergenic 0.0%
!! TTTATCAATTTCATAAAAAT+GGG + chr1_2:41286823-41286842 None:intergenic 10.0%
!! ATTTATCAATTTCATAAAAA+TGG + chr1_2:41286824-41286843 None:intergenic 10.0%
!!! TTACTTCTATTATTTTTTAA+TGG - chr1_2:41287932-41287951 Msa0070650:intron 10.0%
!! AATAAAAATGTAGATAAATT+AGG - chr1_2:41289749-41289768 Msa0070650:intron 10.0%
!!! ATTTTTTTTTTAATGAAAGA+TGG - chr1_2:41290119-41290138 Msa0070650:intron 10.0%
!! NNACAATAAAAACAAAACAT+TGG + chr1_2:41286580-41286599 None:intergenic 15.0%
!! ATCACATAAATAAAGTAAAT+TGG + chr1_2:41288107-41288126 None:intergenic 15.0%
!! ATTACTTATGAATATATGTA+TGG - chr1_2:41289186-41289205 Msa0070650:intron 15.0%
!!! TATCTACATTTTTATTGATT+TGG + chr1_2:41289745-41289764 None:intergenic 15.0%
!! AAAAGTTAAATAAAATCAAG+AGG - chr1_2:41289831-41289850 Msa0070650:intron 15.0%
!!! ATTTTAAATAATTCCAAGTT+AGG + chr1_2:41290080-41290099 None:intergenic 15.0%
!!! TTTTTTAAGTTTGTATTTCT+TGG + chr1_2:41290809-41290828 None:intergenic 15.0%
!! TAATTTCATTTGAAAATTTG+TGG + chr1_2:41290907-41290926 None:intergenic 15.0%
!!! TTTCAATTTTATTTCAGCTT+AGG - chr1_2:41285539-41285558 Msa0070650:intron 20.0%
!!! CATATTTCAAAAGTTCATTT+TGG + chr1_2:41287147-41287166 None:intergenic 20.0%
!!! TTTGACTTGAAAATGATTTA+TGG - chr1_2:41287560-41287579 Msa0070650:intron 20.0%
!!! TTTATGGATTTTAAGTTATG+AGG - chr1_2:41287576-41287595 Msa0070650:intron 20.0%
!!! TTTTCAAACTATGATTTGTT+GGG - chr1_2:41287722-41287741 Msa0070650:intron 20.0%
!!! AAATTTCTTGAAAAGTGTTT+CGG - chr1_2:41287772-41287791 Msa0070650:intron 20.0%
!!! TATTTTTTAATGGAGACTTT+TGG - chr1_2:41287942-41287961 Msa0070650:intron 20.0%
!!! CTTTATTTATGTGATGTAAA+TGG - chr1_2:41288112-41288131 Msa0070650:intron 20.0%
!!! TCTATTTGATGATAATTGAT+TGG - chr1_2:41288789-41288808 Msa0070650:intron 20.0%
!! ATATGTATATACATAAGATG+TGG - chr1_2:41288837-41288856 Msa0070650:intron 20.0%
!!! TATATATGCATGATATCTTT+TGG - chr1_2:41289623-41289642 Msa0070650:intron 20.0%
!!! TTTTACTGCTTAATAGAAAT+AGG - chr1_2:41289699-41289718 Msa0070650:intron 20.0%
!! TTTACTGCTTAATAGAAATA+GGG - chr1_2:41289700-41289719 Msa0070650:intron 20.0%
!!! TACATTTTTATTGATTTGGA+AGG + chr1_2:41289741-41289760 None:intergenic 20.0%
!!! TTCAAATACCACATTTTTTA+GGG + chr1_2:41289930-41289949 None:intergenic 20.0%
!! ATGATTCATGTTAATTAACA+AGG + chr1_2:41291232-41291251 None:intergenic 20.0%
!! TGAATCATATGATAATTTCT+AGG - chr1_2:41291244-41291263 Msa0070650:intron 20.0%
!! GAATCATATGATAATTTCTA+GGG - chr1_2:41291245-41291264 Msa0070650:intron 20.0%
!!! CAAAAATATCAATTTTGAAG+TGG - chr1_2:41291409-41291428 Msa0070650:intron 20.0%
! AAAATTAGGATTATGCGAAT+CGG + chr1_2:41285460-41285479 None:intergenic 25.0%
! TTCATAATCTGTATATGACT+AGG - chr1_2:41286536-41286555 Msa0070650:intron 25.0%
!!! TTTGTTGATTTTGCTCAAAA+TGG - chr1_2:41286963-41286982 Msa0070650:intron 25.0%
!! TAATTTCTGTTTTCATGTTG+TGG - chr1_2:41287215-41287234 Msa0070650:intron 25.0%
! ATAAAATTCAAACCGTTAAC+CGG + chr1_2:41287290-41287309 None:intergenic 25.0%
!!! TAATTTTGTTAGCTTTCCAA+TGG - chr1_2:41287531-41287550 Msa0070650:intron 25.0%
! GGATTCTATAAGTTCAATTA+TGG - chr1_2:41287699-41287718 Msa0070650:intron 25.0%
!!! GTTTTCAAACTATGATTTGT+TGG - chr1_2:41287721-41287740 Msa0070650:intron 25.0%
!!! AACTTGTTTTGCTTAGAAAA+TGG - chr1_2:41287748-41287767 Msa0070650:intron 25.0%
!!! ACTTGTTTTGCTTAGAAAAT+GGG - chr1_2:41287749-41287768 Msa0070650:intron 25.0%
!! TCTTATGAATCTTTTGTGAA+TGG - chr1_2:41288003-41288022 Msa0070650:intron 25.0%
!! TTGAGTTGTTGAAATGTAAA+AGG - chr1_2:41288231-41288250 Msa0070650:intron 25.0%
!!! TGTTTTGATAGTTGTTATGT+TGG - chr1_2:41288270-41288289 Msa0070650:intron 25.0%
!! TGTTGTTGTTGAAATGTAAA+AGG - chr1_2:41288342-41288361 Msa0070650:intron 25.0%
!! TTTTACATAGTTGTTGTAAG+AGG - chr1_2:41288373-41288392 Msa0070650:intron 25.0%
! TTGTGACATTTGGAAATTAA+TGG - chr1_2:41288582-41288601 Msa0070650:intron 25.0%
!! ATTTGTGTATTGGTGAAATT+TGG - chr1_2:41288644-41288663 Msa0070650:intron 25.0%
!!! TTTGTTGATGACTTAATTAG+AGG - chr1_2:41288991-41289010 Msa0070650:intron 25.0%
! ATAATAATGATCATGTGATG+CGG - chr1_2:41289074-41289093 Msa0070650:intron 25.0%
!!! TAGTGTCTATTTGTTGTTTT+TGG - chr1_2:41289443-41289462 Msa0070650:intron 25.0%
!! TAGAGTACTACGAATATTTA+GGG - chr1_2:41289860-41289879 Msa0070650:intron 25.0%
!!! ATTTTTTAGGGATTAAGGTT+CGG + chr1_2:41289918-41289937 None:intergenic 25.0%
!!! GTTCAAATACCACATTTTTT+AGG + chr1_2:41289931-41289950 None:intergenic 25.0%
!!! TTTAATTTGCACTTGTATCA+CGG + chr1_2:41290591-41290610 None:intergenic 25.0%
!!! TTTGTGGTTCTATTTTCAAA+AGG + chr1_2:41290891-41290910 None:intergenic 25.0%
! NNNTTGAACAAGAAAGCAAA+AGG - chr1_2:41291094-41291113 Msa0070650:CDS 25.0%
AAAAATCTTCATCTCCTTCA+AGG - chr1_2:41285400-41285419 Msa0070650:CDS 30.0%
! TCGAATTTTAAGCAGGATTT+TGG - chr1_2:41285969-41285988 Msa0070650:intron 30.0%
! CGAATTTTAAGCAGGATTTT+GGG - chr1_2:41285970-41285989 Msa0070650:intron 30.0%
! GAATTTTAAGCAGGATTTTG+GGG - chr1_2:41285971-41285990 Msa0070650:intron 30.0%
TCATCAACATCATTCTCAAA+CGG + chr1_2:41286113-41286132 None:intergenic 30.0%
! TTTTGCTTTCCGATTATAAG+CGG - chr1_2:41286389-41286408 Msa0070650:intron 30.0%
CTAAATTGAGGCTTGAATTA+AGG - chr1_2:41286734-41286753 Msa0070650:intron 30.0%
! GATTGTTGTTGTTATGTTTG+AGG - chr1_2:41286872-41286891 Msa0070650:intron 30.0%
! GGTATAAATTAGTGTTGTTG+TGG - chr1_2:41286984-41287003 Msa0070650:intron 30.0%
TTCACAAAATGGAATACTCA+TGG + chr1_2:41287081-41287100 None:intergenic 30.0%
CAAACAACAACTTCACAAAA+TGG + chr1_2:41287092-41287111 None:intergenic 30.0%
!! CATTTTGTGAAGTTGTTGTT+TGG - chr1_2:41287090-41287109 Msa0070650:intron 30.0%
! TTTGAATTTTATGCGCGAAA+TGG - chr1_2:41287298-41287317 Msa0070650:intron 30.0%
AAATGGTGAAAACGGAAAAA+CGG - chr1_2:41287315-41287334 Msa0070650:intron 30.0%
AACTTTCATGTTTACACCAA+AGG + chr1_2:41287506-41287525 None:intergenic 30.0%
TCGACTTAAAAGTAGTTATG+CGG + chr1_2:41287643-41287662 None:intergenic 30.0%
TAGAATCCAAGTTTGAAAGT+AGG + chr1_2:41287687-41287706 None:intergenic 30.0%
!! TTTCTTGAATTCGTCGTTTT+TGG - chr1_2:41287813-41287832 Msa0070650:intron 30.0%
AGGATACATAAGCATTTCAT+CGG + chr1_2:41287839-41287858 None:intergenic 30.0%
TATTCTCACAAGTCACTTAT+AGG + chr1_2:41287870-41287889 None:intergenic 30.0%
TAACTGTGTTTGAATGATTG+TGG - chr1_2:41288041-41288060 Msa0070650:intron 30.0%
AGATGTGATTGTTGAATGTA+TGG - chr1_2:41288182-41288201 Msa0070650:intron 30.0%
GATGTGATTGTTGAATGTAT+GGG - chr1_2:41288183-41288202 Msa0070650:intron 30.0%
AGTTGTTGAAATGTAAAAGG+AGG - chr1_2:41288234-41288253 Msa0070650:intron 30.0%
ACATTTCAACAACAACAACA+TGG + chr1_2:41288339-41288358 None:intergenic 30.0%
TGTTGTTGAAATGTAAAAGG+AGG - chr1_2:41288345-41288364 Msa0070650:intron 30.0%
! GTACTCTTACTTAGATGTTT+TGG - chr1_2:41288424-41288443 Msa0070650:intron 30.0%
GAATACATACTTGTGACATT+TGG - chr1_2:41288572-41288591 Msa0070650:intron 30.0%
CTTGCTTATACTTATACACT+TGG - chr1_2:41288762-41288781 Msa0070650:intron 30.0%
! TTGATTGGATGATAATGATG+AGG - chr1_2:41288804-41288823 Msa0070650:intron 30.0%
! ATGATGATAATGTGATAGCT+TGG - chr1_2:41289034-41289053 Msa0070650:intron 30.0%
ATAGCTTGGAATGTAAATGA+TGG - chr1_2:41289048-41289067 Msa0070650:intron 30.0%
TAGCTTGGAATGTAAATGAT+GGG - chr1_2:41289049-41289068 Msa0070650:intron 30.0%
TAATAATGATCATGTGATGC+GGG - chr1_2:41289075-41289094 Msa0070650:intron 30.0%
!! ACTTGGAGTATTTTCATATG+AGG - chr1_2:41289504-41289523 Msa0070650:intron 30.0%
ACTTCAACATATACATGTCA+TGG + chr1_2:41289540-41289559 None:intergenic 30.0%
!! AACTCGCTTGCTTTAAAAAA+TGG + chr1_2:41289803-41289822 None:intergenic 30.0%
! GTAGAGTACTACGAATATTT+AGG - chr1_2:41289859-41289878 Msa0070650:intron 30.0%
!!! TTTTTTAGGGATTAAGGTTC+GGG + chr1_2:41289917-41289936 None:intergenic 30.0%
ACCTTAATCCCTAAAAAATG+TGG - chr1_2:41289919-41289938 Msa0070650:intron 30.0%
!!! ACCACATTTTTTAGGGATTA+AGG + chr1_2:41289923-41289942 None:intergenic 30.0%
GTGATCGTGTTATAAACTTA+AGG + chr1_2:41289953-41289972 None:intergenic 30.0%
!!! GTCATTTTTCAGACTTTCAA+AGG + chr1_2:41290007-41290026 None:intergenic 30.0%
ACTTGAGGGAAATATAAGAT+AGG - chr1_2:41290219-41290238 Msa0070650:intron 30.0%
CTTGAGGGAAATATAAGATA+GGG - chr1_2:41290220-41290239 Msa0070650:intron 30.0%
TTGAGGGAAATATAAGATAG+GGG - chr1_2:41290221-41290240 Msa0070650:intron 30.0%
!! TTAATTTGCACTTGTATCAC+GGG + chr1_2:41290590-41290609 None:intergenic 30.0%
! TTTTCTCATCAAAACATCGA+AGG - chr1_2:41290729-41290748 Msa0070650:CDS 30.0%
TTTGTTAAGAACTTCTTCCT+TGG - chr1_2:41290854-41290873 Msa0070650:CDS 30.0%
TGTTATCGAAAGATTTGTCA+AGG + chr1_2:41290956-41290975 None:intergenic 30.0%
AGAAACCTATAAAACAGTCA+TGG + chr1_2:41291334-41291353 None:intergenic 30.0%
ATAGGTTTCTAATGATCCTA+AGG - chr1_2:41291344-41291363 Msa0070650:intron 30.0%
TAGGTTTCTAATGATCCTAA+GGG - chr1_2:41291345-41291364 Msa0070650:intron 30.0%
!!! AATATCAATTTTGAAGTGGC+TGG - chr1_2:41291413-41291432 Msa0070650:intron 30.0%
!! TTTGAGAGCGTGTTTTTCAA+AGG + chr1_2:41285383-41285402 None:intergenic 35.0%
! GTTTGGATTTTGTACCTTGA+AGG + chr1_2:41285417-41285436 None:intergenic 35.0%
! AACTTTGAGAACAGCTACAT+GGG - chr1_2:41285785-41285804 Msa0070650:intron 35.0%
! TTCTTTGGTGGCTAATGATA+GGG - chr1_2:41285920-41285939 Msa0070650:intron 35.0%
ATAGGGGTTTGGGTAATAAT+TGG - chr1_2:41285937-41285956 Msa0070650:intron 35.0%
TAGGGGTTTGGGTAATAATT+GGG - chr1_2:41285938-41285957 Msa0070650:intron 35.0%
! TAGTTCGTCGAATTTTAAGC+AGG - chr1_2:41285962-41285981 Msa0070650:intron 35.0%
GTATTCTCTTGCTCAGTAAA+CGG + chr1_2:41286137-41286156 None:intergenic 35.0%
GTTTACTGAGCAAGAGAATA+CGG - chr1_2:41286136-41286155 Msa0070650:intron 35.0%
TTTACTGAGCAAGAGAATAC+GGG - chr1_2:41286137-41286156 Msa0070650:intron 35.0%
TGCTTATGATGATATTCCTG+TGG - chr1_2:41286172-41286191 Msa0070650:intron 35.0%
TATTTCCGCAAACGTATTCA+CGG + chr1_2:41286225-41286244 None:intergenic 35.0%
ACGTTTGCGGAAATAGATTT+AGG - chr1_2:41286230-41286249 Msa0070650:intron 35.0%
CTAAGGATTCCGCTTATAAT+CGG + chr1_2:41286401-41286420 None:intergenic 35.0%
GATTATAAGCGGAATCCTTA+GGG - chr1_2:41286400-41286419 Msa0070650:intron 35.0%
AGGCTTGAATTAAGGATTCT+TGG - chr1_2:41286742-41286761 Msa0070650:intron 35.0%
!! TTAAGGATTCTTGGTGTTAG+AGG - chr1_2:41286751-41286770 Msa0070650:intron 35.0%
!! ATTCTTGGTGTTAGAGGTAA+GGG - chr1_2:41286757-41286776 Msa0070650:intron 35.0%
TTGTTGTGGTTGAATAGTGA+TGG - chr1_2:41286998-41287017 Msa0070650:intron 35.0%
! GATGGATTCATGTTTGAATG+AGG - chr1_2:41287016-41287035 Msa0070650:intron 35.0%
! GACTGAGTTTTTGATGTTGT+TGG - chr1_2:41287175-41287194 Msa0070650:intron 35.0%
GTTGTTGGATGAATTTGACT+TGG - chr1_2:41287190-41287209 Msa0070650:intron 35.0%
! AAAGGTACAGAAAGTTAGCA+CGG + chr1_2:41287383-41287402 None:intergenic 35.0%
! TGCTAACTTTCTGTACCTTT+TGG - chr1_2:41287383-41287402 Msa0070650:intron 35.0%
! CACCCATTTATGCTTTGAAT+TGG - chr1_2:41287480-41287499 Msa0070650:intron 35.0%
GGCCAATTCAAAGCATAAAT+GGG + chr1_2:41287485-41287504 None:intergenic 35.0%
AGGCCAATTCAAAGCATAAA+TGG + chr1_2:41287486-41287505 None:intergenic 35.0%
!! TTATGCTTTGAATTGGCCTT+TGG - chr1_2:41287487-41287506 Msa0070650:intron 35.0%
GTTATGAGGAAAACACTCTA+AGG - chr1_2:41287590-41287609 Msa0070650:intron 35.0%
AAAGTAGGAAGCAATCCATA+AGG + chr1_2:41287672-41287691 None:intergenic 35.0%
TTGCTTCCTACTTTCAAACT+TGG - chr1_2:41287678-41287697 Msa0070650:intron 35.0%
! AAGTGACTTGTGAGAATACA+TGG - chr1_2:41287872-41287891 Msa0070650:intron 35.0%
TGTGTTTGAATGATTGTGGA+AGG - chr1_2:41288045-41288064 Msa0070650:intron 35.0%
TCATCAACATTCATCGACAT+CGG + chr1_2:41288152-41288171 None:intergenic 35.0%
CAACAACATGGTATAATGCA+TGG + chr1_2:41288327-41288346 None:intergenic 35.0%
TACATAGTTGTTGTAAGAGG+AGG - chr1_2:41288376-41288395 Msa0070650:intron 35.0%
!! CTCTTACTTAGATGTTTTGG+TGG - chr1_2:41288427-41288446 Msa0070650:intron 35.0%
! GGCATCTATTGTTGTTGATT+TGG - chr1_2:41288448-41288467 Msa0070650:intron 35.0%
ACTTGACACATATATGCATG+TGG + chr1_2:41288476-41288495 None:intergenic 35.0%
TGCATATATGTGTCAAGTCT+AGG - chr1_2:41288478-41288497 Msa0070650:intron 35.0%
ATCTCGTTGTTGCATATGAA+TGG - chr1_2:41288522-41288541 Msa0070650:intron 35.0%
GACTTGACGAATTTGTGTAT+TGG - chr1_2:41288634-41288653 Msa0070650:intron 35.0%
!! ACATAGGTGGATTTTGTTGA+TGG - chr1_2:41288701-41288720 Msa0070650:intron 35.0%
AGCATGCTAAATGAGTAATG+AGG - chr1_2:41288926-41288945 Msa0070650:intron 35.0%
AGCTTGGAATGTAAATGATG+GGG - chr1_2:41289050-41289069 Msa0070650:intron 35.0%
ATACGTGTATGATACACTTG+TGG - chr1_2:41289128-41289147 Msa0070650:intron 35.0%
!!! TGTTGCTATTTTCCACTTGT+CGG - chr1_2:41289481-41289500 Msa0070650:intron 35.0%
TAATATTTCAACGGTCACAG+CGG + chr1_2:41289577-41289596 None:intergenic 35.0%
!! TTTTTAGGGATTAAGGTTCG+GGG + chr1_2:41289916-41289935 None:intergenic 35.0%
ATAACACGATCACGAAAAAG+CGG - chr1_2:41289960-41289979 Msa0070650:intron 35.0%
CTTTCAAAGGCCATTTGATT+TGG + chr1_2:41289994-41290013 None:intergenic 35.0%
ATAGAAATGACGACTTCACT+GGG - chr1_2:41290030-41290049 Msa0070650:intron 35.0%
TGGGGATAACAAAAGTAAGA+GGG - chr1_2:41290049-41290068 Msa0070650:intron 35.0%
TCTTATATTTCCCTCAAGTC+CGG + chr1_2:41290218-41290237 None:intergenic 35.0%
TGTGAGATAACCACAATTAG+CGG - chr1_2:41290292-41290311 Msa0070650:intron 35.0%
!! GATGGGTTAAAGGTAACTAA+AGG + chr1_2:41290398-41290417 None:intergenic 35.0%
TAGTTACCTTTAACCCATCT+TGG - chr1_2:41290399-41290418 Msa0070650:CDS 35.0%
TCTCGGTATCCGATAAAATT+CGG - chr1_2:41290532-41290551 Msa0070650:CDS 35.0%
AAACCATAGTCCTTACCAAA+TGG - chr1_2:41290608-41290627 Msa0070650:CDS 35.0%
AAAAGGTAAGAACGAAACCA+AGG + chr1_2:41290874-41290893 None:intergenic 35.0%
TAAACATAATCCCAAAGGGA+GGG + chr1_2:41291207-41291226 None:intergenic 35.0%
TTAAACATAATCCCAAAGGG+AGG + chr1_2:41291208-41291227 None:intergenic 35.0%
GGCTTAAACATAATCCCAAA+GGG + chr1_2:41291211-41291230 None:intergenic 35.0%
AGGCTTAAACATAATCCCAA+AGG + chr1_2:41291212-41291231 None:intergenic 35.0%
ACATACAAGTATAGCAAGCA+TGG + chr1_2:41291304-41291323 None:intergenic 35.0%
! TCGTTCCATGACTGTTTTAT+AGG - chr1_2:41291326-41291345 Msa0070650:intron 35.0%
TAATGATCCTAAGGGTCATA+TGG - chr1_2:41291353-41291372 Msa0070650:intron 35.0%
GAATCGGATAAGATTGAAGG+AGG + chr1_2:41285444-41285463 None:intergenic 40.0%
TGCGAATCGGATAAGATTGA+AGG + chr1_2:41285447-41285466 None:intergenic 40.0%
! GAATCGTTGATTAAGAAGCG+TGG - chr1_2:41285701-41285720 Msa0070650:intron 40.0%
! CAACTTTGAGAACAGCTACA+TGG - chr1_2:41285784-41285803 Msa0070650:intron 40.0%
CAATGCAGCTAATGCTTCAT+CGG - chr1_2:41285821-41285840 Msa0070650:intron 40.0%
ATTGATCGGTTACGAAGATG+AGG + chr1_2:41285879-41285898 None:intergenic 40.0%
TCATCTTCGTAACCGATCAA+TGG - chr1_2:41285878-41285897 Msa0070650:intron 40.0%
CTATCATTAGCCACCAAAGA+AGG + chr1_2:41285921-41285940 None:intergenic 40.0%
! CTTCTTTGGTGGCTAATGAT+AGG - chr1_2:41285919-41285938 Msa0070650:intron 40.0%
! TCTTTGGTGGCTAATGATAG+GGG - chr1_2:41285921-41285940 Msa0070650:intron 40.0%
AGGGGTTTGGGTAATAATTG+GGG - chr1_2:41285939-41285958 Msa0070650:intron 40.0%
TTACTGAGCAAGAGAATACG+GGG - chr1_2:41286138-41286157 Msa0070650:intron 40.0%
ATTTCCGCAAACGTATTCAC+GGG + chr1_2:41286224-41286243 None:intergenic 40.0%
TAAGTATGTGAAACCGACAC+CGG - chr1_2:41286283-41286302 Msa0070650:intron 40.0%
CGATTATAAGCGGAATCCTT+AGG - chr1_2:41286399-41286418 Msa0070650:intron 40.0%
AACACCTAGGAGCTAAATTG+AGG - chr1_2:41286722-41286741 Msa0070650:intron 40.0%
!! GATTCTTGGTGTTAGAGGTA+AGG - chr1_2:41286756-41286775 Msa0070650:intron 40.0%
!! TTCTTGGTGTTAGAGGTAAG+GGG - chr1_2:41286758-41286777 Msa0070650:intron 40.0%
GTGCTAAGATGTTCATGTGA+AGG - chr1_2:41287120-41287139 Msa0070650:intron 40.0%
TTGTGTTAGTCGAGTCGTTT+GGG - chr1_2:41287238-41287257 Msa0070650:intron 40.0%
TATGCGCGAAATGGTGAAAA+CGG - chr1_2:41287307-41287326 Msa0070650:intron 40.0%
!! TGTTAGCTTTCCAATGGCTT+TGG - chr1_2:41287537-41287556 Msa0070650:intron 40.0%
TCAAGTCAAACCAAAGCCAT+TGG + chr1_2:41287550-41287569 None:intergenic 40.0%
TTAAGTCGACGCAAACCTTA+TGG - chr1_2:41287654-41287673 Msa0070650:intron 40.0%
CTTGTGAGAATACATGGCAT+AGG - chr1_2:41287878-41287897 Msa0070650:intron 40.0%
!! TGAGCTTGTGGAATTGGTTT+TGG - chr1_2:41287905-41287924 Msa0070650:intron 40.0%
GGTGTACTCTTACATGTAAG+AGG - chr1_2:41288397-41288416 Msa0070650:intron 40.0%
GTACTCTTACATGTAAGAGG+AGG - chr1_2:41288400-41288419 Msa0070650:intron 40.0%
TGGTGAATGTTGTGATTGTG+CGG - chr1_2:41288664-41288683 Msa0070650:intron 40.0%
AATGTTGTGATTGTGCGGAT+TGG - chr1_2:41288669-41288688 Msa0070650:intron 40.0%
! GGATTGGTGTATAGGTACAT+AGG - chr1_2:41288685-41288704 Msa0070650:intron 40.0%
TTGGTGTATAGGTACATAGG+TGG - chr1_2:41288688-41288707 Msa0070650:intron 40.0%
GCTTGGAATGTAAATGATGG+GGG - chr1_2:41289051-41289070 Msa0070650:intron 40.0%
TACACTTGTGGAGATGAACT+TGG - chr1_2:41289140-41289159 Msa0070650:intron 40.0%
! GAGTTTGCTTGTTGGATGTT+TGG - chr1_2:41289360-41289379 Msa0070650:intron 40.0%
! GTAGTATCTAGGCTCTGATT+AGG - chr1_2:41289418-41289437 Msa0070650:intron 40.0%
! TATTTTCCACTTGTCGGACT+TGG - chr1_2:41289487-41289506 Msa0070650:intron 40.0%
!! GGGTTGGTTATATTTAGGGA+AGG + chr1_2:41289895-41289914 None:intergenic 40.0%
!! TCGGGGGTTGGTTATATTTA+GGG + chr1_2:41289899-41289918 None:intergenic 40.0%
!! TTCGGGGGTTGGTTATATTT+AGG + chr1_2:41289900-41289919 None:intergenic 40.0%
!! TTTTAGGGATTAAGGTTCGG+GGG + chr1_2:41289915-41289934 None:intergenic 40.0%
TAACACGATCACGAAAAAGC+GGG - chr1_2:41289961-41289980 Msa0070650:intron 40.0%
GATAGAAATGACGACTTCAC+TGG - chr1_2:41290029-41290048 Msa0070650:intron 40.0%
TAGAAATGACGACTTCACTG+GGG - chr1_2:41290031-41290050 Msa0070650:intron 40.0%
CTGGGGATAACAAAAGTAAG+AGG - chr1_2:41290048-41290067 Msa0070650:intron 40.0%
TAAGAGGGTTAAGCCTAACT+TGG - chr1_2:41290064-41290083 Msa0070650:intron 40.0%
! CTCGTTTCTTTTAACGTGAG+TGG - chr1_2:41290176-41290195 Msa0070650:intron 40.0%
CTTATATTTCCCTCAAGTCC+GGG + chr1_2:41290217-41290236 None:intergenic 40.0%
AGGGAAATATAAGATAGGGG+TGG - chr1_2:41290224-41290243 Msa0070650:intron 40.0%
TCAAGACACGAGAATACTCT+CGG + chr1_2:41290268-41290287 None:intergenic 40.0%
CTAAAGGTTCTTAGCTTCGA+CGG + chr1_2:41290382-41290401 None:intergenic 40.0%
!! AAAAGGCCAAGATGGGTTAA+AGG + chr1_2:41290408-41290427 None:intergenic 40.0%
!! TTAACCCATCTTGGCCTTTT+AGG - chr1_2:41290408-41290427 Msa0070650:CDS 40.0%
ACTATTTCCGAGAAAACACC+CGG + chr1_2:41290452-41290471 None:intergenic 40.0%
GACTTTCCTACTAACGTTGT+TGG - chr1_2:41290498-41290517 Msa0070650:CDS 40.0%
GGTATCCGATAAAATTCGGA+GGG - chr1_2:41290536-41290555 Msa0070650:CDS 40.0%
GTATCCGATAAAATTCGGAG+GGG - chr1_2:41290537-41290556 Msa0070650:CDS 40.0%
TATCCGATAAAATTCGGAGG+GGG - chr1_2:41290538-41290557 Msa0070650:CDS 40.0%
GATAACAACGCCATTTGGTA+AGG + chr1_2:41290621-41290640 None:intergenic 40.0%
TTATCCTTGGCTCCAACATA+TGG - chr1_2:41290636-41290655 Msa0070650:CDS 40.0%
CGAGGTTTAAGTCCATATGT+TGG + chr1_2:41290651-41290670 None:intergenic 40.0%
CTACACAAACAGTGAAAACG+TGG + chr1_2:41290674-41290693 None:intergenic 40.0%
CAGAGATATTCCACCTTGAA+AGG - chr1_2:41290776-41290795 Msa0070650:CDS 40.0%
AGATATTCCACCTTGAAAGG+AGG - chr1_2:41290779-41290798 Msa0070650:CDS 40.0%
ACAAGAAAGCAAAAGGAGCA+AGG - chr1_2:41291101-41291120 Msa0070650:CDS 40.0%
!! GGTTTGGTTTGTTGATGCTT+AGG - chr1_2:41291130-41291149 Msa0070650:five_prime_UTR 40.0%
! TGTTGATGCTTAGGAGCTTT+TGG - chr1_2:41291139-41291158 Msa0070650:five_prime_UTR 40.0%
! GTTGATGCTTAGGAGCTTTT+GGG - chr1_2:41291140-41291159 Msa0070650:five_prime_UTR 40.0%
GAATCAAGTGCAATCATGCT+TGG - chr1_2:41291162-41291181 Msa0070650:five_prime_UTR 40.0%
AAAGGGAGGGAAACTAACTA+AGG + chr1_2:41291194-41291213 None:intergenic 40.0%
! TTAGTTAGTTTCCCTCCCTT+TGG - chr1_2:41291193-41291212 Msa0070650:five_prime_UTR 40.0%
! TAGTTAGTTTCCCTCCCTTT+GGG - chr1_2:41291194-41291213 Msa0070650:five_prime_UTR 40.0%
AGCAAGCATGGCAAGAAAAA+GGG + chr1_2:41291292-41291311 None:intergenic 40.0%
TAGCAAGCATGGCAAGAAAA+AGG + chr1_2:41291293-41291312 None:intergenic 40.0%
CTAGGCGAGTAAAATTACTG+GGG + chr1_2:41291546-41291565 None:intergenic 40.0%
CCTAGGCGAGTAAAATTACT+GGG + chr1_2:41291547-41291566 None:intergenic 40.0%
! TGCGCAACAAAAAGCGTGTT+TGG - chr1_2:41285274-41285293 Msa0070650:CDS 45.0%
AGATTGAAGGAGGAGAGGTT+TGG + chr1_2:41285434-41285453 None:intergenic 45.0%
GGATAAGATTGAAGGAGGAG+AGG + chr1_2:41285439-41285458 None:intergenic 45.0%
AGATGAGGAGGAACATAAGC+CGG + chr1_2:41285864-41285883 None:intergenic 45.0%
TCATTAGCCACCAAAGAAGG+TGG + chr1_2:41285918-41285937 None:intergenic 45.0%
GTGGCTAATGATAGGGGTTT+GGG - chr1_2:41285927-41285946 Msa0070650:intron 45.0%
!!! TTTAAGCAGGATTTTGGGGC+TGG - chr1_2:41285975-41285994 Msa0070650:intron 45.0%
!!! TTAAGCAGGATTTTGGGGCT+GGG - chr1_2:41285976-41285995 Msa0070650:intron 45.0%
AGACAAGTAGGTGGAGGATA+CGG - chr1_2:41285999-41286018 Msa0070650:intron 45.0%
!! TTTGGTGGGTTTAACAGAGG+AGG - chr1_2:41286038-41286057 Msa0070650:intron 45.0%
ATATTCCTGTGGAGACGAGT+GGG - chr1_2:41286183-41286202 Msa0070650:intron 45.0%
GGTATAGCATACCTCTGAAC+CGG + chr1_2:41286305-41286324 None:intergenic 45.0%
!! CTATACCGATTTCGCTTGCT+GGG - chr1_2:41286318-41286337 Msa0070650:intron 45.0%
! TTTGATGGCTTGTGCTCAGA+CGG - chr1_2:41286346-41286365 Msa0070650:intron 45.0%
TTTGAGCATACTGCTCCCTA+AGG + chr1_2:41286418-41286437 None:intergenic 45.0%
CACTTATCCTATCCCCTACT+CGG - chr1_2:41286471-41286490 Msa0070650:intron 45.0%
ACTTATCCTATCCCCTACTC+GGG - chr1_2:41286472-41286491 Msa0070650:intron 45.0%
! CAAGCCTCAATTTAGCTCCT+AGG + chr1_2:41286729-41286748 None:intergenic 45.0%
!! TCTTGGTGTTAGAGGTAAGG+GGG - chr1_2:41286759-41286778 Msa0070650:intron 45.0%
!!! GAGGTAAGGGGGTTAGTTTT+TGG - chr1_2:41286770-41286789 Msa0070650:intron 45.0%
GTTGTGTTAGTCGAGTCGTT+TGG - chr1_2:41287237-41287256 Msa0070650:intron 45.0%
TCGAGTCGTTTGGGAGAAAA+TGG - chr1_2:41287247-41287266 Msa0070650:intron 45.0%
CGAGTCGTTTGGGAGAAAAT+GGG - chr1_2:41287248-41287267 Msa0070650:intron 45.0%
TACAGAAAGTTAGCACGGCA+CGG + chr1_2:41287378-41287397 None:intergenic 45.0%
GTCACTTATAGGTGCAGTAG+AGG + chr1_2:41287859-41287878 None:intergenic 45.0%
GGCAATTGAGCTTGTGGAAT+TGG - chr1_2:41287899-41287918 Msa0070650:intron 45.0%
!! GATTGTGCGGATTGGTGTAT+AGG - chr1_2:41288677-41288696 Msa0070650:intron 45.0%
AATCTAATGCTTACCCCCAG+TGG - chr1_2:41289277-41289296 Msa0070650:intron 45.0%
TTGTTGGATGTTTGGACGAC+AGG - chr1_2:41289368-41289387 Msa0070650:intron 45.0%
GTGTCAGTGTCGTAGTATCT+AGG - chr1_2:41289407-41289426 Msa0070650:intron 45.0%
AATACTCCAAGTCCGACAAG+TGG + chr1_2:41289496-41289515 None:intergenic 45.0%
TGGTGAGATAAGTCCTAACC+CGG - chr1_2:41290196-41290215 Msa0070650:intron 45.0%
GAGATAACCACAATTAGCGG+AGG - chr1_2:41290295-41290314 Msa0070650:intron 45.0%
ACGTCCTAAAAGGCCAAGAT+GGG + chr1_2:41290415-41290434 None:intergenic 45.0%
TACGTCCTAAAAGGCCAAGA+TGG + chr1_2:41290416-41290435 None:intergenic 45.0%
TCCTACTAACGTTGTTGGAC+CGG - chr1_2:41290503-41290522 Msa0070650:CDS 45.0%
CGGTATCCGATAAAATTCGG+AGG - chr1_2:41290535-41290554 Msa0070650:CDS 45.0%
! CAACCCCCTCCGAATTTTAT+CGG + chr1_2:41290544-41290563 None:intergenic 45.0%
! GGTTGTAGACTTTGGGAACT+TGG - chr1_2:41290559-41290578 Msa0070650:CDS 45.0%
ACGCCATTTGGTAAGGACTA+TGG + chr1_2:41290614-41290633 None:intergenic 45.0%
CCAAGGATAACAACGCCATT+TGG + chr1_2:41290626-41290645 None:intergenic 45.0%
CCAAATGGCGTTGTTATCCT+TGG - chr1_2:41290623-41290642 Msa0070650:CDS 45.0%
AAGTCCATATGTTGGAGCCA+AGG + chr1_2:41290643-41290662 None:intergenic 45.0%
!! TCTTGGTGTTCCTCCTTTCA+AGG + chr1_2:41290792-41290811 None:intergenic 45.0%
!! ATATGGCACTTGGTGATGCT+TGG - chr1_2:41291370-41291389 Msa0070650:intron 45.0%
!! ACTTGGTGATGCTTGGTTTG+AGG - chr1_2:41291377-41291396 Msa0070650:intron 45.0%
! CCCAGTAATTTTACTCGCCT+AGG - chr1_2:41291544-41291563 Msa0070650:five_prime_UTR 45.0%
GCCTAGGCGAGTAAAATTAC+TGG + chr1_2:41291548-41291567 None:intergenic 45.0%
CCTGAGGCGAACAAAACAAT+GGG + chr1_2:41291590-41291609 None:intergenic 45.0%
ACCTGAGGCGAACAAAACAA+TGG + chr1_2:41291591-41291610 None:intergenic 45.0%
!! ATATATATATAATATTTCAA+CGG + chr1_2:41289586-41289605 None:intergenic 5.0%
!! GAACATAAGCCGGCTTGACT+GGG + chr1_2:41285854-41285873 None:intergenic 50.0%
GATCGGTTACGAAGATGAGG+AGG + chr1_2:41285876-41285895 None:intergenic 50.0%
TAACCGATCAATGGCTGCTC+CGG - chr1_2:41285887-41285906 Msa0070650:intron 50.0%
GGTGGCTAATGATAGGGGTT+TGG - chr1_2:41285926-41285945 Msa0070650:intron 50.0%
!! GGCTTTGGTGGGTTTAACAG+AGG - chr1_2:41286035-41286054 Msa0070650:intron 50.0%
TGGGTTTAACAGAGGAGGAG+CGG - chr1_2:41286043-41286062 Msa0070650:intron 50.0%
GATATTCCTGTGGAGACGAG+TGG - chr1_2:41286182-41286201 Msa0070650:intron 50.0%
TATTCCTGTGGAGACGAGTG+GGG - chr1_2:41286184-41286203 Msa0070650:intron 50.0%
!! GCTATACCGATTTCGCTTGC+TGG - chr1_2:41286317-41286336 Msa0070650:intron 50.0%
TCTCTCCCAGCAAGCGAAAT+CGG + chr1_2:41286326-41286345 None:intergenic 50.0%
! GCTTGCTGGGAGAGATTTGA+TGG - chr1_2:41286331-41286350 Msa0070650:intron 50.0%
! TTGATGGCTTGTGCTCAGAC+GGG - chr1_2:41286347-41286366 Msa0070650:intron 50.0%
GTATGCTCAAAGACCACGTG+TGG - chr1_2:41286427-41286446 Msa0070650:intron 50.0%
GAAGAGGGGATTCAACACCT+AGG - chr1_2:41286709-41286728 Msa0070650:intron 50.0%
! GGGTTTTTCGTGTGAGATGC+CGG - chr1_2:41287268-41287287 Msa0070650:intron 50.0%
! TCGTGTGAGATGCCGGTTAA+CGG - chr1_2:41287275-41287294 Msa0070650:intron 50.0%
GTTGTGCTGTCAATCGAGCA+CGG - chr1_2:41287352-41287371 Msa0070650:intron 50.0%
CGAAGTTCTGTCAACACGCA+CGG + chr1_2:41287436-41287455 None:intergenic 50.0%
! CGTGCGTGTTGACAGAACTT+CGG - chr1_2:41287434-41287453 Msa0070650:intron 50.0%
GGCATAGGCAATTGAGCTTG+TGG - chr1_2:41287893-41287912 Msa0070650:intron 50.0%
TCATGTGATGCGGGTGTTCT+AGG - chr1_2:41289084-41289103 Msa0070650:intron 50.0%
CATCCATACAGACAGGTAGG+CGG + chr1_2:41289309-41289328 None:intergenic 50.0%
GCCTACCTGTCTGTATGGAT+GGG - chr1_2:41289308-41289327 Msa0070650:intron 50.0%
ACCCATCCATACAGACAGGT+AGG + chr1_2:41289312-41289331 None:intergenic 50.0%
GTCTACCCATCCATACAGAC+AGG + chr1_2:41289316-41289335 None:intergenic 50.0%
! CGCTTGGTGAGTTTGCTTGT+TGG - chr1_2:41289352-41289371 Msa0070650:intron 50.0%
CTACGACACTGACACGACAA+CGG + chr1_2:41289402-41289421 None:intergenic 50.0%
GGGTCGAACGCCAAATCAAA+TGG - chr1_2:41289981-41290000 Msa0070650:intron 50.0%
TAAGTCCTAACCCGGACTTG+AGG - chr1_2:41290204-41290223 Msa0070650:intron 50.0%
AAGTCCTAACCCGGACTTGA+GGG - chr1_2:41290205-41290224 Msa0070650:intron 50.0%
ATTTCCCTCAAGTCCGGGTT+AGG + chr1_2:41290212-41290231 None:intergenic 50.0%
TAGGGGTGGTAGACTCATAG+TGG - chr1_2:41290238-41290257 Msa0070650:intron 50.0%
TCAAGCTCCTCCGCTAATTG+TGG + chr1_2:41290305-41290324 None:intergenic 50.0%
CCATCGCACTACGTCCTAAA+AGG + chr1_2:41290425-41290444 None:intergenic 50.0%
!!! CCTTTTAGGACGTAGTGCGA+TGG - chr1_2:41290422-41290441 Msa0070650:CDS 50.0%
! TGGCTAACCGGGTGTTTTCT+CGG - chr1_2:41290442-41290461 Msa0070650:CDS 50.0%
CCTACTAACGTTGTTGGACC+GGG - chr1_2:41290504-41290523 Msa0070650:CDS 50.0%
! TGTTGGACCGGGTGTTTTCT+CGG - chr1_2:41290515-41290534 Msa0070650:CDS 50.0%
TCGGATACCGAGAAAACACC+CGG + chr1_2:41290525-41290544 None:intergenic 50.0%
CAAACAGTGAAAACGTGGCG+AGG + chr1_2:41290669-41290688 None:intergenic 50.0%
TGGTGTTCCTCCTTTCAAGG+TGG + chr1_2:41290789-41290808 None:intergenic 50.0%
AGCAAAAGGAGCAAGGAGCT+AGG - chr1_2:41291108-41291127 Msa0070650:CDS 50.0%
GCAAAAGGAGCAAGGAGCTA+GGG - chr1_2:41291109-41291128 Msa0070650:CDS 50.0%
CCAAGTGCCATATGACCCTT+AGG + chr1_2:41291363-41291382 None:intergenic 50.0%
CCTAAGGGTCATATGGCACT+TGG - chr1_2:41291360-41291379 Msa0070650:intron 50.0%
TTACTCACCATGGCGAGTTG+GGG + chr1_2:41291513-41291532 None:intergenic 50.0%
CTTACTCACCATGGCGAGTT+GGG + chr1_2:41291514-41291533 None:intergenic 50.0%
TCTTACTCACCATGGCGAGT+TGG + chr1_2:41291515-41291534 None:intergenic 50.0%
AGGCGAGATCTTACTCACCA+TGG + chr1_2:41291523-41291542 None:intergenic 50.0%
GGCGAGTAAAATTACTGGGG+AGG + chr1_2:41291543-41291562 None:intergenic 50.0%
!! CCCATTGTTTTGTTCGCCTC+AGG - chr1_2:41291587-41291606 Msa0070650:five_prime_UTR 50.0%
TTGTTCGCCTCAGGTCGTTT+CGG - chr1_2:41291596-41291615 Msa0070650:five_prime_UTR 50.0%
!! GGAACATAAGCCGGCTTGAC+TGG + chr1_2:41285855-41285874 None:intergenic 55.0%
AGCCACCAAAGAAGGTGGCT+CGG + chr1_2:41285913-41285932 None:intergenic 55.0%
! TTTGGGGCTGGGAGACAAGT+AGG - chr1_2:41285987-41286006 Msa0070650:intron 55.0%
CAAGTAGGTGGAGGATACGG+TGG - chr1_2:41286002-41286021 Msa0070650:intron 55.0%
GGGTTTAACAGAGGAGGAGC+GGG - chr1_2:41286044-41286063 Msa0070650:intron 55.0%
GGTTTAACAGAGGAGGAGCG+GGG - chr1_2:41286045-41286064 Msa0070650:intron 55.0%
GCAAACGTATTCACGGGAGG+CGG + chr1_2:41286218-41286237 None:intergenic 55.0%
GCCTCCCGTGAATACGTTTG+CGG - chr1_2:41286217-41286236 Msa0070650:intron 55.0%
TCCGCAAACGTATTCACGGG+AGG + chr1_2:41286221-41286240 None:intergenic 55.0%
!! TGAAACCGACACCGGTTCAG+AGG - chr1_2:41286291-41286310 Msa0070650:intron 55.0%
GCATACCTCTGAACCGGTGT+CGG + chr1_2:41286299-41286318 None:intergenic 55.0%
CTCAAAGACCACGTGTGGCA+CGG - chr1_2:41286432-41286451 Msa0070650:intron 55.0%
GGGGATAGGATAAGTGCGAG+AGG + chr1_2:41286467-41286486 None:intergenic 55.0%
ACAAGAGAGCTCCCGAGTAG+GGG + chr1_2:41286486-41286505 None:intergenic 55.0%
GACAAGAGAGCTCCCGAGTA+GGG + chr1_2:41286487-41286506 None:intergenic 55.0%
TGACAAGAGAGCTCCCGAGT+AGG + chr1_2:41286488-41286507 None:intergenic 55.0%
TACTCGGGAGCTCTCTTGTC+AGG - chr1_2:41286487-41286506 Msa0070650:intron 55.0%
! TGTGATGCGGGTGTTCTAGG+AGG - chr1_2:41289087-41289106 Msa0070650:intron 55.0%
!! GTGATGCGGGTGTTCTAGGA+GGG - chr1_2:41289088-41289107 Msa0070650:intron 55.0%
CGCCTACCTGTCTGTATGGA+TGG - chr1_2:41289307-41289326 Msa0070650:intron 55.0%
TGGATGGGTAGACGTTGTGC+AGG - chr1_2:41289323-41289342 Msa0070650:intron 55.0%
GTTGTGCAGGACTAGACGCT+TGG - chr1_2:41289336-41289355 Msa0070650:intron 55.0%
AGGGATTAAGGTTCGGGGGT+TGG + chr1_2:41289911-41289930 None:intergenic 55.0%
GACGTAGTGCGATGGCTAAC+CGG - chr1_2:41290430-41290449 Msa0070650:CDS 55.0%
ACGTAGTGCGATGGCTAACC+GGG - chr1_2:41290431-41290450 Msa0070650:CDS 55.0%
CCCGGTCCAACAACGTTAGT+AGG + chr1_2:41290507-41290526 None:intergenic 55.0%
TCGGAGGGGGTTGTAGACTT+TGG - chr1_2:41290551-41290570 Msa0070650:CDS 55.0%
CGGAGGGGGTTGTAGACTTT+GGG - chr1_2:41290552-41290571 Msa0070650:CDS 55.0%
AGGAGCAAGGAGCTAGGGTT+TGG - chr1_2:41291114-41291133 Msa0070650:exon 55.0%
TGGACTGTCACAGCTCGTCA+CGG - chr1_2:41291433-41291452 Msa0070650:intron 55.0%
GCGAGCTAGAAGGTCGAACA+GGG - chr1_2:41291475-41291494 Msa0070650:intron 55.0%
CGAGCTAGAAGGTCGAACAG+GGG - chr1_2:41291476-41291495 Msa0070650:intron 55.0%
GAGCTAGAAGGTCGAACAGG+GGG - chr1_2:41291477-41291496 Msa0070650:intron 55.0%
AGCTAGAAGGTCGAACAGGG+GGG - chr1_2:41291478-41291497 Msa0070650:intron 55.0%
! TACTCACCATGGCGAGTTGG+GGG + chr1_2:41291512-41291531 None:intergenic 55.0%
CGAAATGCCGAAACGACCTG+AGG + chr1_2:41291606-41291625 None:intergenic 55.0%
TCGTTTCGGCATTTCGCGAG+CGG - chr1_2:41291610-41291629 Msa0070650:five_prime_UTR 55.0%
! ACCAAAGAAGGTGGCTCGGC+CGG + chr1_2:41285909-41285928 None:intergenic 60.0%
GCTGGGAGACAAGTAGGTGG+AGG - chr1_2:41285993-41286012 Msa0070650:intron 60.0%
GTAGGTGGAGGATACGGTGG+TGG - chr1_2:41286005-41286024 Msa0070650:intron 60.0%
!! GTGGTGGTGGTGGCTTTGGT+GGG - chr1_2:41286024-41286043 Msa0070650:intron 60.0%
AACAGAGGAGGAGCGGGGAA+TGG - chr1_2:41286050-41286069 Msa0070650:intron 60.0%
ACAGAGGAGGAGCGGGGAAT+GGG - chr1_2:41286051-41286070 Msa0070650:intron 60.0%
AGCGTGTGGGTGGAGGAAGA+CGG - chr1_2:41286078-41286097 Msa0070650:intron 60.0%
TTCTCCCCACTCGTCTCCAC+AGG + chr1_2:41286191-41286210 None:intergenic 60.0%
! GCTTGTGCTCAGACGGGTTC+AGG - chr1_2:41286353-41286372 Msa0070650:intron 60.0%
TAAGCAGTCCGTGCCACACG+TGG + chr1_2:41286443-41286462 None:intergenic 60.0%
AGAGCTCCCGAGTAGGGGAT+AGG + chr1_2:41286481-41286500 None:intergenic 60.0%
CGGGAGCTCTCTTGTCAGGT+CGG - chr1_2:41286491-41286510 Msa0070650:intron 60.0%
GGGAGCTCTCTTGTCAGGTC+GGG - chr1_2:41286492-41286511 Msa0070650:intron 60.0%
GGAGCTCTCTTGTCAGGTCG+GGG - chr1_2:41286493-41286512 Msa0070650:intron 60.0%
!! ATGCGGGTGTTCTAGGAGGG+AGG - chr1_2:41289091-41289110 Msa0070650:intron 60.0%
TAGGCGGTCGAAACCACTGG+GGG + chr1_2:41289293-41289312 None:intergenic 60.0%
GTAGGCGGTCGAAACCACTG+GGG + chr1_2:41289294-41289313 None:intergenic 60.0%
GGTAGGCGGTCGAAACCACT+GGG + chr1_2:41289295-41289314 None:intergenic 60.0%
AGGTAGGCGGTCGAAACCAC+TGG + chr1_2:41289296-41289315 None:intergenic 60.0%
CGACCGCCTACCTGTCTGTA+TGG - chr1_2:41289303-41289322 Msa0070650:intron 60.0%
CGGCGAGTAAACTGCTCGCA+AGG - chr1_2:41291453-41291472 Msa0070650:intron 60.0%
TGCTCGCAAGGCGAGCTAGA+AGG - chr1_2:41291465-41291484 Msa0070650:intron 60.0%
GGCGAGCTAGAAGGTCGAAC+AGG - chr1_2:41291474-41291493 Msa0070650:intron 60.0%
GCCTAGGCGAGCAACACAGT+GGG - chr1_2:41291560-41291579 Msa0070650:five_prime_UTR 60.0%
CCTAGGCGAGCAACACAGTG+GGG - chr1_2:41291561-41291580 Msa0070650:five_prime_UTR 60.0%
CTAGGCGAGCAACACAGTGG+GGG - chr1_2:41291562-41291581 Msa0070650:five_prime_UTR 60.0%
CGGCCGGAGCAGCCATTGAT+CGG + chr1_2:41285893-41285912 None:intergenic 65.0%
TCCGGCCGAGCCACCTTCTT+TGG - chr1_2:41285905-41285924 Msa0070650:intron 65.0%
GGCCGAGCCACCTTCTTTGG+TGG - chr1_2:41285908-41285927 Msa0070650:intron 65.0%
GGGGCTGGGAGACAAGTAGG+TGG - chr1_2:41285990-41286009 Msa0070650:intron 65.0%
! GGTGGAGGATACGGTGGTGG+TGG - chr1_2:41286008-41286027 Msa0070650:intron 65.0%
!! GGAGGATACGGTGGTGGTGG+TGG - chr1_2:41286011-41286030 Msa0070650:intron 65.0%
!! GGATACGGTGGTGGTGGTGG+TGG - chr1_2:41286014-41286033 Msa0070650:intron 65.0%
!! GGTGGTGGTGGTGGTGGCTT+TGG - chr1_2:41286020-41286039 Msa0070650:intron 65.0%
!! GGTGGTGGTGGTGGCTTTGG+TGG - chr1_2:41286023-41286042 Msa0070650:intron 65.0%
AGGAGGAGCGGGGAATGGGA+GGG - chr1_2:41286055-41286074 Msa0070650:intron 65.0%
! GGGAATGGGAGGGAGCGTGT+GGG - chr1_2:41286065-41286084 Msa0070650:intron 65.0%
! AATGGGAGGGAGCGTGTGGG+TGG - chr1_2:41286068-41286087 Msa0070650:intron 65.0%
GCGTGTGGGTGGAGGAAGAC+GGG - chr1_2:41286079-41286098 Msa0070650:intron 65.0%
TGTGGGTGGAGGAAGACGGG+AGG - chr1_2:41286082-41286101 Msa0070650:intron 65.0%
! ATGGCGAGTTGGGGGCGAGT+AGG + chr1_2:41291504-41291523 None:intergenic 65.0%
TACTCGCCCCCAACTCGCCA+TGG - chr1_2:41291503-41291522 Msa0070650:five_prime_UTR 65.0%
CGCCTAGGCGAGCAACACAG+TGG - chr1_2:41291559-41291578 Msa0070650:five_prime_UTR 65.0%
! CCCCACTGTGTTGCTCGCCT+AGG + chr1_2:41291564-41291583 None:intergenic 65.0%
GAGGAGGAGCGGGGAATGGG+AGG - chr1_2:41286054-41286073 Msa0070650:intron 70.0%
! GGGGAATGGGAGGGAGCGTG+TGG - chr1_2:41286064-41286083 Msa0070650:intron 70.0%
ACGGGCACGGGCGTGCCAAA+AGG + chr1_2:41287401-41287420 None:intergenic 70.0%
!! AGCCGGCTTGACTGGGCGCG+CGG + chr1_2:41285847-41285866 None:intergenic 75.0%
! GGGAGGGAGCGTGTGGGTGG+AGG - chr1_2:41286071-41286090 Msa0070650:intron 75.0%
! GGCCGCGCGCCCAGTCAAGC+CGG - chr1_2:41285842-41285861 Msa0070650:intron 80.0%
! GCCCGTGCCCGTGCGTGGCA+CGG - chr1_2:41287409-41287428 Msa0070650:intron 80.0%
! CCCGTGCCACGCACGGGCAC+GGG + chr1_2:41287413-41287432 None:intergenic 80.0%
! CCCGTGCCCGTGCGTGGCAC+GGG - chr1_2:41287410-41287429 Msa0070650:intron 80.0%
! GCCCGTGCCACGCACGGGCA+CGG + chr1_2:41287414-41287433 None:intergenic 80.0%
! GCACGGCCCGTGCCACGCAC+GGG + chr1_2:41287419-41287438 None:intergenic 80.0%
! CGCACGGCCCGTGCCACGCA+CGG + chr1_2:41287420-41287439 None:intergenic 80.0%
! GGCACGCCCGTGCCCGTGCG+TGG - chr1_2:41287404-41287423 Msa0070650:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 41285246 41291659 41285246 ID=Msa0070650;Name=Msa0070650
chr1_2 mRNA 41285246 41291659 41285246 ID=Msa0070650-mRNA-1;Parent=Msa0070650;Name=Msa0070650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=282|0.33|0.25|0.5|0.66|0.5|4|0|319
chr1_2 exon 41285246 41285296 41285246 ID=Msa0070650-mRNA-1:exon:12639;Parent=Msa0070650-mRNA-1
chr1_2 exon 41285381 41285557 41285381 ID=Msa0070650-mRNA-1:exon:12638;Parent=Msa0070650-mRNA-1
chr1_2 exon 41290397 41291234 41290397 ID=Msa0070650-mRNA-1:exon:12637;Parent=Msa0070650-mRNA-1
chr1_2 exon 41291484 41291659 41291484 ID=Msa0070650-mRNA-1:exon:12636;Parent=Msa0070650-mRNA-1
chr1_2 five_prime_UTR 41291484 41291659 41291484 ID=Msa0070650-mRNA-1:five_prime_utr;Parent=Msa0070650-mRNA-1
chr1_2 five_prime_UTR 41291129 41291234 41291129 ID=Msa0070650-mRNA-1:five_prime_utr;Parent=Msa0070650-mRNA-1
chr1_2 CDS 41290397 41291128 41290397 ID=Msa0070650-mRNA-1:cds;Parent=Msa0070650-mRNA-1
chr1_2 CDS 41285381 41285557 41285381 ID=Msa0070650-mRNA-1:cds;Parent=Msa0070650-mRNA-1
chr1_2 CDS 41285246 41285296 41285246 ID=Msa0070650-mRNA-1:cds;Parent=Msa0070650-mRNA-1
Gene Sequence

>Msa0070650

ATGTCTGCAACTTTGAGAACAGCTACATGGGCAGATGCTGCTGACAATGCAGCTAATGCTTCATCGGCCGCGCGCCCAGTCAAGCCGGCTTATGTTCCTCCTCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGATACGGTGGTGGTGGTGGTGGCTTTGGTGGGTTTAACAGAGGAGGAGCGGGGAATGGGAGGGAGCGTGTGGGTGGAGGAAGACGGGAGGCGAATCCGTTTGAGAATGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCCGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTCGCACTTATCCTATCCCCTACTCGGGAGCTCTCTTGTCAGGTTTCTAATGATCCTAAGGGTCATATGGCACTTGGTGATGCTTGGTTTGAGGTTTTTAAGTCAAAAATATCAATTTTGAAGTGGCTGGACTGTCACAGCTCGTCACGGCGAGTAAACTGCTCGCAAGGCGAGCTAGAAGGTCGAACAGGGGGGCCTACTCGCCCCCAACTCGCCATGGTCGTTTCGGCATTTCGCGAGCGGTTTTTCTTGTGCAGTCTTTTTAAGTGA
Protein sequence

>Msa0070650

MSATLRTATWADAADNAANASSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGFGGFNRGGAGNGRERVGGGRREANPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQVSNDPKGHMALGDAWFEVFKSKISILKWLDCHSSSRRVNCSQGELEGRTGGPTRPQLAMVVSAFRERFFLCSLFK*