AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382370 MtrunA17_Chr3g0137081 99.273 275 2 0 100 374 1 275 0.0 564
Msa0382370 MtrunA17_Chr4g0001271 81.887 265 47 1 108 371 7 271 2.43e-162 456
Msa0382370 MtrunA17_Chr7g0267081 54.851 268 112 5 112 371 22 288 6.29e-94 282
Msa0382370 MtrunA17_Chr8g0386691 50.752 266 127 4 109 370 5 270 3.44e-89 270
Msa0382370 MtrunA17_Chr8g0386681 50.746 268 124 5 109 370 5 270 4.86e-87 264
Msa0382370 MtrunA17_Chr1g0177961 46.497 314 111 5 112 368 15 328 4.59e-85 261
Msa0382370 MtrunA17_Chr5g0418281 49.281 278 131 6 103 372 7 282 1.25e-81 251
Msa0382370 MtrunA17_Chr5g0447661 48.276 261 131 4 113 370 13 272 2.54e-80 247
Msa0382370 MtrunA17_Chr2g0321651 47.703 283 132 8 100 370 1 279 3.31e-74 231
Msa0382370 MtrunA17_Chr3g0144801 42.491 273 122 6 103 371 6 247 1.39e-67 213
Msa0382370 MtrunA17_Chr7g0228321 76.786 56 13 0 223 278 10 65 5.68e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382370 AT2G32070.1 78.030 264 57 1 109 371 6 269 1.28e-153 434
Msa0382370 AT5G10960.1 76.806 263 61 0 109 371 6 268 1.57e-152 431
Msa0382370 AT1G80780.3 77.567 263 59 0 109 371 6 268 2.37e-152 431
Msa0382370 AT1G80780.1 77.567 263 59 0 109 371 6 268 2.39e-152 431
Msa0382370 AT1G80780.2 77.567 263 59 0 109 371 6 268 2.39e-152 431
Msa0382370 AT1G15920.2 62.547 267 94 1 108 368 9 275 2.09e-118 345
Msa0382370 AT1G15920.1 62.547 267 94 1 108 368 9 275 2.09e-118 345
Msa0382370 AT3G44260.1 53.846 273 118 7 105 370 8 279 4.72e-91 275
Msa0382370 AT5G22250.1 52.985 268 118 7 111 370 10 277 5.78e-88 267
Msa0382370 AT1G06450.1 36.680 259 146 7 116 369 10 255 7.22e-45 158
Msa0382370 AT1G61470.1 35.743 249 140 6 117 359 4 238 3.76e-36 133
Msa0382370 AT3G44240.1 37.719 228 128 6 129 353 3 219 7.11e-35 129
Msa0382370 AT1G27820.1 34.034 238 141 6 117 349 8 234 4.70e-30 117
Msa0382370 AT1G27890.1 34.454 238 140 6 117 349 3 229 1.87e-27 110

Find 78 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGTGGTTATGATTT+TGG 0.162019 3_1:-84894794 Msa0382370:CDS
TCCTCGACGAAGATCGATTT+TGG 0.237909 3_1:+84895721 None:intergenic
AAGAAAGAACAAAGTATAAT+TGG 0.288547 3_1:-84894452 Msa0382370:three_prime_UTR
TACTCACAGCTTGTACATTT+AGG 0.316594 3_1:-84894565 Msa0382370:CDS
CACTTCTGCCAGAAAGAAAA+TGG 0.325996 3_1:-84894379 Msa0382370:three_prime_UTR
AAAATGACGTCGTTTACAAT+TGG 0.327114 3_1:+84895857 None:intergenic
GGAATCGACGTGAACAGATT+TGG 0.350401 3_1:-84894872 Msa0382370:CDS
GAGAGAGAAGAACGAAGGTT+GGG 0.357475 3_1:+84895778 None:intergenic
GAACAAGCTTGCGGAATTGC+TGG 0.383855 3_1:-84894633 Msa0382370:CDS
AGAGAGAGAAGAACGAAGGT+TGG 0.387895 3_1:+84895777 None:intergenic
AGAGGTATGGAACGATAATC+TGG 0.393193 3_1:-84895236 Msa0382370:CDS
TTTGACGTGCAGGGCTTTGC+CGG 0.395764 3_1:-84894756 Msa0382370:CDS
AGTTTCCTGGTGTTGTTCTT+CGG 0.398208 3_1:-84895150 Msa0382370:CDS
GGCGAAACAGAGAAATATTC+TGG 0.400040 3_1:-84894518 Msa0382370:CDS
CGTCGTTTACAATTGGGCCT+GGG 0.407925 3_1:+84895864 None:intergenic
TGGGGTGCGAGGGTTGAGTC+TGG 0.408850 3_1:+84895797 None:intergenic
TATACTTATCAACAATTTCA+CGG 0.412664 3_1:+84895194 None:intergenic
AACTATCCGATCCAGCTTGA+TGG 0.415822 3_1:+84894588 None:intergenic
TCTGGTGTGTTGTATGGATT+AGG 0.418411 3_1:-84894500 Msa0382370:CDS
AAGTTCTGTAACAGTCTTCA+TGG 0.419529 3_1:-84894662 Msa0382370:CDS
GGTGTTGTTCTTCGGCCTGT+TGG 0.419609 3_1:-84895142 Msa0382370:CDS
AAATGACGTCGTTTACAATT+GGG 0.420982 3_1:+84895858 None:intergenic
AAATATTCTGGTGTGTTGTA+TGG 0.424598 3_1:-84894506 Msa0382370:CDS
GGAGAACTTCTGATGTCATC+CGG 0.426593 3_1:-84894851 Msa0382370:CDS
GTGTTGTTCTTCGGCCTGTT+GGG 0.429390 3_1:-84895141 Msa0382370:CDS
ACGTCGTTTACAATTGGGCC+TGG 0.432005 3_1:+84895863 None:intergenic
CGGAATTGCTGGAAGTTGAG+AGG 0.432657 3_1:-84894622 Msa0382370:CDS
GTCAACGAAGCAAAGGGATT+GGG 0.433233 3_1:+84895745 None:intergenic
ATGTTGAAGCTGATTCAGTT+AGG 0.437086 3_1:-84895064 Msa0382370:CDS
TGTTGAATGATAATGTTCAT+TGG 0.444197 3_1:-84894823 Msa0382370:CDS
GAAGCAAAGGGATTGGGAAA+TGG 0.457781 3_1:+84895751 None:intergenic
ATATGCTTAAAATTCCCAAC+AGG 0.468744 3_1:+84895127 None:intergenic
TGTTTGATATCATACACAAT+CGG 0.482779 3_1:+84894692 None:intergenic
TTGTACATTTAGGAAGTTGA+GGG 0.486839 3_1:-84894555 Msa0382370:CDS
TTAACGAAGGATTTACAGAA+AGG 0.493060 3_1:-84895277 Msa0382370:CDS
GTTGAATGATAATGTTCATT+GGG 0.498652 3_1:-84894822 Msa0382370:CDS
GTTTGATATCATACACAATC+GGG 0.509746 3_1:+84894693 None:intergenic
GCACTGATAGTCCTTGCATC+TGG 0.511115 3_1:-84895000 Msa0382370:CDS
CGATTCAAATCAGAGAGGTA+TGG 0.516845 3_1:-84895249 Msa0382370:CDS
GTTGGTGTGTGCCATCAAGC+TGG 0.516903 3_1:-84894599 Msa0382370:CDS
TTTGGAGTCAACGAAGCAAA+GGG 0.519348 3_1:+84895739 None:intergenic
TCTTAAAATCAATTCCGCAT+TGG 0.519845 3_1:+84894909 None:intergenic
GCGATGGATACAGAGTTTCC+TGG 0.522554 3_1:-84895163 Msa0382370:CDS
AGAACGAAGGTTGGGGTGCG+AGG 0.534010 3_1:+84895786 None:intergenic
GTCGTTTACAATTGGGCCTG+GGG 0.534292 3_1:+84895865 None:intergenic
AGTCAACGAAGCAAAGGGAT+TGG 0.535953 3_1:+84895744 None:intergenic
AGAGAGAAGAACGAAGGTTG+GGG 0.537636 3_1:+84895779 None:intergenic
CAAGCTAACAAAACAAGCTA+AGG 0.539782 3_1:+84894301 None:intergenic
GAGAACTTCTGATGTCATCC+GGG 0.551352 3_1:-84894850 Msa0382370:CDS
TTTAAGAAGAACAGCGAGCA+AGG 0.554251 3_1:-84894893 Msa0382370:CDS
ATTTGTACTCGGTGAGAACG+TGG 0.555563 3_1:+84895820 None:intergenic
CTTGTACATTTAGGAAGTTG+AGG 0.555789 3_1:-84894556 Msa0382370:CDS
AATCGATCTTCGTCGAGGAT+CGG 0.557321 3_1:-84895717 Msa0382370:CDS
GCTTTGCCGGATACACAAGC+TGG 0.557400 3_1:-84894743 Msa0382370:CDS
ATGGAACGATAATCTGGAAG+AGG 0.557973 3_1:-84895230 Msa0382370:CDS
GCAAGGACTATCAGTGCCAC+AGG 0.564639 3_1:+84895006 None:intergenic
TGGTGGTTTGAACAAGCTTG+CGG 0.579595 3_1:-84894642 Msa0382370:CDS
TTTGTACTCGGTGAGAACGT+GGG 0.579728 3_1:+84895821 None:intergenic
GAAGAGAGAGAGAAGAACGA+AGG 0.584387 3_1:+84895773 None:intergenic
GAACGAAGGTTGGGGTGCGA+GGG 0.586799 3_1:+84895787 None:intergenic
GTTGAGTCTGGATTTGTACT+CGG 0.590132 3_1:+84895809 None:intergenic
AAATTGAATTGCCAGATGCA+AGG 0.592828 3_1:+84894989 None:intergenic
TAAGTATAACTATGTTGCGA+TGG 0.597473 3_1:-84895179 Msa0382370:CDS
TTGCTGGAAGTTGAGAGGGT+TGG 0.602040 3_1:-84894617 Msa0382370:CDS
ATTATCATTCAACACAATCC+CGG 0.602210 3_1:+84894832 None:intergenic
TTGAGGGAAACATTCTTCAA+CGG 0.604445 3_1:-84894539 Msa0382370:CDS
TTGTACTCGGTGAGAACGTG+GGG 0.612039 3_1:+84895822 None:intergenic
ACAGGCCGAAGAACAACACC+AGG 0.618032 3_1:+84895145 None:intergenic
GGAATTGCTGGAAGTTGAGA+GGG 0.625969 3_1:-84894621 Msa0382370:CDS
GGACTATCAGTGCCACAGGT+AGG 0.632411 3_1:+84895010 None:intergenic
TGAAATGACGGATTTAACGA+AGG 0.651784 3_1:-84895290 Msa0382370:CDS
TGTGTGCCATCAAGCTGGAT+CGG 0.653723 3_1:-84894594 Msa0382370:CDS
TTCTGTAACAGTCTTCATGG+TGG 0.661335 3_1:-84894659 Msa0382370:CDS
TCCAAAATCGATCTTCGTCG+AGG 0.661811 3_1:-84895722 Msa0382370:CDS
AATGGAAATTTACCTACCTG+TGG 0.695151 3_1:-84895022 Msa0382370:CDS
CCTTGTAGTGAAGAAAACGA+AGG 0.744080 3_1:+84895683 None:intergenic
AGATTCGATTCAAATCAGAG+AGG 0.775869 3_1:-84895254 Msa0382370:CDS
GATTTGATAACAGATCTGAG+TGG 0.798204 3_1:-84895349 Msa0382370:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTATCAACAATTTCA+CGG + chr3_1:84894960-84894979 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG - chr3_1:84895699-84895718 Msa0382370:CDS 20.0%
!! TATACTTATCAACAATTTCA+CGG + chr3_1:84894960-84894979 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG - chr3_1:84895699-84895718 Msa0382370:CDS 20.0%
! AGTTAATAGAGTGAAGAAAA+CGG + chr3_1:84894504-84894523 None:intergenic 25.0%
!!! TTTTGATTTGGATTTGGATT+TGG - chr3_1:84894825-84894844 Msa0382370:CDS 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG - chr3_1:84895053-84895072 Msa0382370:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG - chr3_1:84895111-84895130 Msa0382370:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG - chr3_1:84895328-84895347 Msa0382370:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG - chr3_1:84895329-84895348 Msa0382370:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG + chr3_1:84895462-84895481 None:intergenic 25.0%
! AGTTAATAGAGTGAAGAAAA+CGG + chr3_1:84894504-84894523 None:intergenic 25.0%
!!! TTTTGATTTGGATTTGGATT+TGG - chr3_1:84894825-84894844 Msa0382370:CDS 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG - chr3_1:84895053-84895072 Msa0382370:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG - chr3_1:84895111-84895130 Msa0382370:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG - chr3_1:84895328-84895347 Msa0382370:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG - chr3_1:84895329-84895348 Msa0382370:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG + chr3_1:84895462-84895481 None:intergenic 25.0%
AAATGACGTCGTTTACAATT+GGG + chr3_1:84894296-84894315 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG + chr3_1:84894297-84894316 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG + chr3_1:84894567-84894586 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG + chr3_1:84894568-84894587 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG - chr3_1:84894751-84894770 Msa0382370:CDS 30.0%
TTAACGAAGGATTTACAGAA+AGG - chr3_1:84894874-84894893 Msa0382370:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG - chr3_1:84894972-84894991 Msa0382370:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG + chr3_1:84895027-84895046 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG + chr3_1:84895245-84895264 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG + chr3_1:84895322-84895341 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG - chr3_1:84895357-84895376 Msa0382370:intron 30.0%
GTTTGATATCATACACAATC+GGG + chr3_1:84895461-84895480 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG - chr3_1:84895596-84895615 Msa0382370:intron 30.0%
AAATATTCTGGTGTGTTGTA+TGG - chr3_1:84895645-84895664 Msa0382370:intron 30.0%
! AACAACAACCATTTTCTTTC+TGG + chr3_1:84895783-84895802 None:intergenic 30.0%
AAATGACGTCGTTTACAATT+GGG + chr3_1:84894296-84894315 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG + chr3_1:84894297-84894316 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG + chr3_1:84894567-84894586 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG + chr3_1:84894568-84894587 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG - chr3_1:84894751-84894770 Msa0382370:CDS 30.0%
TTAACGAAGGATTTACAGAA+AGG - chr3_1:84894874-84894893 Msa0382370:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG - chr3_1:84894972-84894991 Msa0382370:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG + chr3_1:84895027-84895046 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG + chr3_1:84895245-84895264 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG + chr3_1:84895322-84895341 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG - chr3_1:84895357-84895376 Msa0382370:intron 30.0%
GTTTGATATCATACACAATC+GGG + chr3_1:84895461-84895480 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG - chr3_1:84895596-84895615 Msa0382370:intron 30.0%
AAATATTCTGGTGTGTTGTA+TGG - chr3_1:84895645-84895664 Msa0382370:intron 30.0%
! AACAACAACCATTTTCTTTC+TGG + chr3_1:84895783-84895802 None:intergenic 30.0%
! TAACTACTACTTCGTTTTCC+AGG - chr3_1:84894519-84894538 Msa0382370:CDS 35.0%
! AACTACTACTTCGTTTTCCA+GGG - chr3_1:84894520-84894539 Msa0382370:CDS 35.0%
ACTGAATTTGAAGATTCTGC+AGG - chr3_1:84894691-84894710 Msa0382370:CDS 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG - chr3_1:84894768-84894787 Msa0382370:CDS 35.0%
! GATTTGATAACAGATCTGAG+TGG - chr3_1:84894802-84894821 Msa0382370:CDS 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG - chr3_1:84894813-84894832 Msa0382370:CDS 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG - chr3_1:84894819-84894838 Msa0382370:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG - chr3_1:84894849-84894868 Msa0382370:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG - chr3_1:84894861-84894880 Msa0382370:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG - chr3_1:84894897-84894916 Msa0382370:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG - chr3_1:84895087-84895106 Msa0382370:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG - chr3_1:84895129-84895148 Msa0382370:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG + chr3_1:84895165-84895184 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG + chr3_1:84895417-84895436 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG - chr3_1:84895426-84895445 Msa0382370:intron 35.0%
!! CTGGATTTTTCGATTTGATC+GGG - chr3_1:84895427-84895446 Msa0382370:intron 35.0%
AAGTTCTGTAACAGTCTTCA+TGG - chr3_1:84895489-84895508 Msa0382370:intron 35.0%
TACTCACAGCTTGTACATTT+AGG - chr3_1:84895586-84895605 Msa0382370:intron 35.0%
CTTGTACATTTAGGAAGTTG+AGG - chr3_1:84895595-84895614 Msa0382370:intron 35.0%
TTGAGGGAAACATTCTTCAA+CGG - chr3_1:84895612-84895631 Msa0382370:intron 35.0%
CAAGCTAACAAAACAAGCTA+AGG + chr3_1:84895853-84895872 None:intergenic 35.0%
! TAACTACTACTTCGTTTTCC+AGG - chr3_1:84894519-84894538 Msa0382370:CDS 35.0%
! AACTACTACTTCGTTTTCCA+GGG - chr3_1:84894520-84894539 Msa0382370:CDS 35.0%
ACTGAATTTGAAGATTCTGC+AGG - chr3_1:84894691-84894710 Msa0382370:CDS 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG - chr3_1:84894768-84894787 Msa0382370:CDS 35.0%
! GATTTGATAACAGATCTGAG+TGG - chr3_1:84894802-84894821 Msa0382370:CDS 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG - chr3_1:84894813-84894832 Msa0382370:CDS 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG - chr3_1:84894819-84894838 Msa0382370:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG - chr3_1:84894849-84894868 Msa0382370:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG - chr3_1:84894861-84894880 Msa0382370:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG - chr3_1:84894897-84894916 Msa0382370:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG - chr3_1:84895087-84895106 Msa0382370:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG - chr3_1:84895129-84895148 Msa0382370:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG + chr3_1:84895165-84895184 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG + chr3_1:84895417-84895436 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG - chr3_1:84895426-84895445 Msa0382370:intron 35.0%
!! CTGGATTTTTCGATTTGATC+GGG - chr3_1:84895427-84895446 Msa0382370:intron 35.0%
AAGTTCTGTAACAGTCTTCA+TGG - chr3_1:84895489-84895508 Msa0382370:intron 35.0%
TACTCACAGCTTGTACATTT+AGG - chr3_1:84895586-84895605 Msa0382370:intron 35.0%
CTTGTACATTTAGGAAGTTG+AGG - chr3_1:84895595-84895614 Msa0382370:intron 35.0%
TTGAGGGAAACATTCTTCAA+CGG - chr3_1:84895612-84895631 Msa0382370:intron 35.0%
CAAGCTAACAAAACAAGCTA+AGG + chr3_1:84895853-84895872 None:intergenic 35.0%
ACCAAAAATTATCACACCCC+AGG - chr3_1:84894270-84894289 Msa0382370:three_prime_UTR 40.0%
GTTGAGTCTGGATTTGTACT+CGG + chr3_1:84894345-84894364 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG + chr3_1:84894415-84894434 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG + chr3_1:84894416-84894435 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG + chr3_1:84894471-84894490 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG - chr3_1:84894468-84894487 Msa0382370:exon 40.0%
TTGAAGTGAACTAGGGTTTG+AGG + chr3_1:84894560-84894579 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG + chr3_1:84894665-84894684 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG - chr3_1:84894902-84894921 Msa0382370:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG - chr3_1:84894915-84894934 Msa0382370:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG - chr3_1:84894921-84894940 Msa0382370:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG - chr3_1:84895001-84895020 Msa0382370:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG - chr3_1:84895258-84895277 Msa0382370:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG - chr3_1:84895345-84895364 Msa0382370:intron 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG - chr3_1:84895385-84895404 Msa0382370:intron 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG - chr3_1:84895386-84895405 Msa0382370:intron 40.0%
TTCTGTAACAGTCTTCATGG+TGG - chr3_1:84895492-84895511 Msa0382370:intron 40.0%
GGCGAAACAGAGAAATATTC+TGG - chr3_1:84895633-84895652 Msa0382370:intron 40.0%
TCTGGTGTGTTGTATGGATT+AGG - chr3_1:84895651-84895670 Msa0382370:intron 40.0%
CACTTCTGCCAGAAAGAAAA+TGG - chr3_1:84895772-84895791 Msa0382370:CDS 40.0%
ACCAAAAATTATCACACCCC+AGG - chr3_1:84894270-84894289 Msa0382370:three_prime_UTR 40.0%
GTTGAGTCTGGATTTGTACT+CGG + chr3_1:84894345-84894364 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG + chr3_1:84894415-84894434 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG + chr3_1:84894416-84894435 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG + chr3_1:84894471-84894490 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG - chr3_1:84894468-84894487 Msa0382370:exon 40.0%
TTGAAGTGAACTAGGGTTTG+AGG + chr3_1:84894560-84894579 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG + chr3_1:84894665-84894684 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG - chr3_1:84894902-84894921 Msa0382370:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG - chr3_1:84894915-84894934 Msa0382370:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG - chr3_1:84894921-84894940 Msa0382370:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG - chr3_1:84895001-84895020 Msa0382370:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG - chr3_1:84895258-84895277 Msa0382370:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG - chr3_1:84895345-84895364 Msa0382370:intron 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG - chr3_1:84895385-84895404 Msa0382370:intron 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG - chr3_1:84895386-84895405 Msa0382370:intron 40.0%
TTCTGTAACAGTCTTCATGG+TGG - chr3_1:84895492-84895511 Msa0382370:intron 40.0%
GGCGAAACAGAGAAATATTC+TGG - chr3_1:84895633-84895652 Msa0382370:intron 40.0%
TCTGGTGTGTTGTATGGATT+AGG - chr3_1:84895651-84895670 Msa0382370:intron 40.0%
CACTTCTGCCAGAAAGAAAA+TGG - chr3_1:84895772-84895791 Msa0382370:CDS 40.0%
! GCCTGGGGTGTGATAATTTT+TGG + chr3_1:84894274-84894293 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG + chr3_1:84894333-84894352 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG + chr3_1:84894334-84894353 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG + chr3_1:84894375-84894394 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG + chr3_1:84894376-84894395 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG + chr3_1:84894377-84894396 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG + chr3_1:84894381-84894400 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG + chr3_1:84894403-84894422 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG + chr3_1:84894409-84894428 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG + chr3_1:84894410-84894429 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG - chr3_1:84894429-84894448 Msa0382370:three_prime_UTR 45.0%
!! TCCTCGACGAAGATCGATTT+TGG + chr3_1:84894433-84894452 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG - chr3_1:84894434-84894453 Msa0382370:three_prime_UTR 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG + chr3_1:84894540-84894559 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG - chr3_1:84895279-84895298 Msa0382370:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG - chr3_1:84895300-84895319 Msa0382370:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG - chr3_1:84895301-84895320 Msa0382370:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG - chr3_1:84895509-84895528 Msa0382370:intron 45.0%
GGAATTGCTGGAAGTTGAGA+GGG - chr3_1:84895530-84895549 Msa0382370:intron 45.0%
AACTATCCGATCCAGCTTGA+TGG + chr3_1:84895566-84895585 None:intergenic 45.0%
! GCCTGGGGTGTGATAATTTT+TGG + chr3_1:84894274-84894293 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG + chr3_1:84894333-84894352 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG + chr3_1:84894334-84894353 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG + chr3_1:84894375-84894394 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG + chr3_1:84894376-84894395 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG + chr3_1:84894377-84894396 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG + chr3_1:84894381-84894400 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG + chr3_1:84894403-84894422 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG + chr3_1:84894409-84894428 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG + chr3_1:84894410-84894429 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG - chr3_1:84894429-84894448 Msa0382370:three_prime_UTR 45.0%
!! TCCTCGACGAAGATCGATTT+TGG + chr3_1:84894433-84894452 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG - chr3_1:84894434-84894453 Msa0382370:three_prime_UTR 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG + chr3_1:84894540-84894559 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG - chr3_1:84895279-84895298 Msa0382370:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG - chr3_1:84895300-84895319 Msa0382370:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG - chr3_1:84895301-84895320 Msa0382370:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG - chr3_1:84895509-84895528 Msa0382370:intron 45.0%
GGAATTGCTGGAAGTTGAGA+GGG - chr3_1:84895530-84895549 Msa0382370:intron 45.0%
AACTATCCGATCCAGCTTGA+TGG + chr3_1:84895566-84895585 None:intergenic 45.0%
GTCGTTTACAATTGGGCCTG+GGG + chr3_1:84894289-84894308 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG + chr3_1:84894290-84894309 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG + chr3_1:84894291-84894310 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG + chr3_1:84894332-84894351 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG - chr3_1:84894988-84895007 Msa0382370:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG - chr3_1:84895010-84895029 Msa0382370:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG - chr3_1:84895151-84895170 Msa0382370:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG - chr3_1:84895228-84895247 Msa0382370:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG - chr3_1:84895518-84895537 Msa0382370:intron 50.0%
CGGAATTGCTGGAAGTTGAG+AGG - chr3_1:84895529-84895548 Msa0382370:intron 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG - chr3_1:84895534-84895553 Msa0382370:intron 50.0%
TGTGTGCCATCAAGCTGGAT+CGG - chr3_1:84895557-84895576 Msa0382370:intron 50.0%
GTCGTTTACAATTGGGCCTG+GGG + chr3_1:84894289-84894308 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG + chr3_1:84894290-84894309 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG + chr3_1:84894291-84894310 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG + chr3_1:84894332-84894351 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG - chr3_1:84894988-84895007 Msa0382370:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG - chr3_1:84895010-84895029 Msa0382370:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG - chr3_1:84895151-84895170 Msa0382370:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG - chr3_1:84895228-84895247 Msa0382370:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG - chr3_1:84895518-84895537 Msa0382370:intron 50.0%
CGGAATTGCTGGAAGTTGAG+AGG - chr3_1:84895529-84895548 Msa0382370:intron 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG - chr3_1:84895534-84895553 Msa0382370:intron 50.0%
TGTGTGCCATCAAGCTGGAT+CGG - chr3_1:84895557-84895576 Msa0382370:intron 50.0%
ACAGGCCGAAGAACAACACC+AGG + chr3_1:84895009-84895028 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG - chr3_1:84895009-84895028 Msa0382370:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG + chr3_1:84895144-84895163 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG + chr3_1:84895148-84895167 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG - chr3_1:84895395-84895414 Msa0382370:intron 55.0%
GCTTTGCCGGATACACAAGC+TGG - chr3_1:84895408-84895427 Msa0382370:intron 55.0%
GTTGGTGTGTGCCATCAAGC+TGG - chr3_1:84895552-84895571 Msa0382370:intron 55.0%
ACAGGCCGAAGAACAACACC+AGG + chr3_1:84895009-84895028 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG - chr3_1:84895009-84895028 Msa0382370:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG + chr3_1:84895144-84895163 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG + chr3_1:84895148-84895167 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG - chr3_1:84895395-84895414 Msa0382370:intron 55.0%
GCTTTGCCGGATACACAAGC+TGG - chr3_1:84895408-84895427 Msa0382370:intron 55.0%
GTTGGTGTGTGCCATCAAGC+TGG - chr3_1:84895552-84895571 Msa0382370:intron 55.0%
GAACGAAGGTTGGGGTGCGA+GGG + chr3_1:84894367-84894386 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG + chr3_1:84894368-84894387 None:intergenic 60.0%
GAACGAAGGTTGGGGTGCGA+GGG + chr3_1:84894367-84894386 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG + chr3_1:84894368-84894387 None:intergenic 60.0%
TGGGGTGCGAGGGTTGAGTC+TGG + chr3_1:84894357-84894376 None:intergenic 65.0%
TGGGGTGCGAGGGTTGAGTC+TGG + chr3_1:84894357-84894376 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84894243 84895930 84894243 ID=Msa0382370;Name=Msa0382370
chr3_1 mRNA 84894243 84895930 84894243 ID=Msa0382370-mRNA-1;Parent=Msa0382370;Name=Msa0382370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|0|0.5|2|238|374
chr3_1 exon 84894243 84895358 84894243 ID=Msa0382370-mRNA-1:exon:22223;Parent=Msa0382370-mRNA-1
chr3_1 exon 84895684 84895930 84895684 ID=Msa0382370-mRNA-1:exon:22222;Parent=Msa0382370-mRNA-1
chr3_1 CDS 84895684 84895930 84895684 ID=Msa0382370-mRNA-1:cds;Parent=Msa0382370-mRNA-1
chr3_1 CDS 84894481 84895358 84894481 ID=Msa0382370-mRNA-1:cds;Parent=Msa0382370-mRNA-1
chr3_1 three_prime_UTR 84894243 84894480 84894243 ID=Msa0382370-mRNA-1:three_prime_utr;Parent=Msa0382370-mRNA-1
Gene Sequence

>Msa0382370

TTAACGACTGATATCTTATTGTCGCATACCAAAAATTATCACACCCCAGGCCCAATTGTAAACGACGTCATTTTTAATCAAAACGACCCCACGTTCTCACCGAGTACAAATCCAGACTCAACCCTCGCACCCCAACCTTCGTTCTTCTCTCTCTCTTCCATTTCCCAATCCCTTTGCTTCGTTGACTCCAAAATCGATCTTCGTCGAGGATCGGTGATACTTCAACCTTCGTTTTCTTCACTACAAGATCTGAGTGGTTTTGATTTGGATTTGGATTTGGATTTTGCTGTGTGTGAAATGACGGATTTAACGAAGGATTTACAGAAAGGAGATTCGATTCAAATCAGAGAGGTATGGAACGATAATCTGGAAGAGGAATTTGTGTTGATCCGTGAAATTGTTGATAAGTATAACTATGTTGCGATGGATACAGAGTTTCCTGGTGTTGTTCTTCGGCCTGTTGGGAATTTTAAGCATATTAACGATTTTAACTATCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAGAATGGAAATTTACCTACCTGTGGCACTGATAGTCCTTGCATCTGGCAATTCAATTTTCGCGAGTTTAATGTTAGCGAAGATATTTTCGCTGCTGATTCGATCGAGCTTTTGCGCCAATGCGGAATTGATTTTAAGAAGAACAGCGAGCAAGGAATCGACGTGAACAGATTTGGAGAACTTCTGATGTCATCCGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTTTTGAAGCTTTTGACGTGCAGGGCTTTGCCGGATACACAAGCTGGATTTTTCGATTTGATCGGGATTTATTTCCCGATTGTGTATGATATCAAACATTTGATGAAGTTCTGTAACAGTCTTCATGGTGGTTTGAACAAGCTTGCGGAATTGCTGGAAGTTGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCGGATAGTTTACTCACAGCTTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAAACAGACTAA

Protein sequence

>Msa0382370

LTTDILLSHTKNYHTPGPIVNDVIFNQNDPTFSPSTNPDSTLAPQPSFFSLSSISQSLCFVDSKIDLRRGSVILQPSFSSLQDLSGFDLDLDLDFAVCEMTDLTKDLQKGDSIQIREVWNDNLEEEFVLIREIVDKYNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSPCIWQFNFREFNVSEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRALPDTQAGFFDLIGIYFPIVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKTD*