AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118540 MtrunA17_Chr1g0176041 99.013 608 4 1 1 606 1 608 0.0 1236
Msa0118540 MtrunA17_Chr3g0121351 71.746 630 128 9 8 606 3 613 0.0 799
Msa0118540 MtrunA17_Chr4g0063551 59.516 578 206 9 8 571 3 566 0.0 637
Msa0118540 MtrunA17_Chr2g0330401 43.880 433 213 8 139 563 83 493 1.79e-112 345
Msa0118540 MtrunA17_Chr6g0449911 43.868 424 218 6 139 559 152 558 4.74e-111 348
Msa0118540 MtrunA17_Chr3g0107851 45.363 399 202 5 136 527 101 490 5.92e-109 338
Msa0118540 MtrunA17_Chr2g0293631 43.427 426 221 7 139 562 483 890 3.25e-101 332
Msa0118540 MtrunA17_Chr4g0076491 39.514 453 242 8 113 545 244 684 2.71e-99 317
Msa0118540 MtrunA17_Chr7g0270131 41.099 455 238 10 115 556 184 621 3.71e-97 313
Msa0118540 MtrunA17_Chr6g0449741 40.330 424 229 6 135 545 232 644 3.99e-97 311
Msa0118540 MtrunA17_Chr1g0157691 39.066 407 227 5 141 540 136 528 1.77e-91 294
Msa0118540 MtrunA17_Chr1g0200181 39.558 407 225 6 141 540 134 526 2.44e-91 293
Msa0118540 MtrunA17_Chr2g0277821 39.659 411 230 5 137 544 489 884 1.01e-86 292
Msa0118540 MtrunA17_Chr4g0058591 41.775 383 201 8 108 485 156 521 3.09e-86 278
Msa0118540 MtrunA17_Chr5g0409981 39.462 446 238 11 128 562 77 501 4.57e-86 278
Msa0118540 MtrunA17_Chr6g0461751 35.266 414 252 5 146 556 134 534 3.13e-78 257
Msa0118540 MtrunA17_Chr5g0442191 38.462 364 207 8 153 515 82 429 1.07e-72 244
Msa0118540 MtrunA17_Chr7g0271121 40.960 354 188 8 176 525 130 466 1.14e-72 248
Msa0118540 MtrunA17_Chr1g0193491 35.408 466 261 13 121 568 87 530 2.77e-71 241
Msa0118540 MtrunA17_Chr3g0095031 39.595 346 192 7 173 517 111 440 1.64e-69 235
Msa0118540 MtrunA17_Chr6g0483491 34.615 390 235 6 150 538 8 378 1.53e-64 218
Msa0118540 MtrunA17_Chr7g0236841 32.880 441 265 9 150 581 8 426 3.37e-64 217
Msa0118540 MtrunA17_Chr2g0300291 37.403 385 210 9 151 526 140 502 1.83e-62 220
Msa0118540 MtrunA17_Chr3g0098121 36.856 388 207 7 151 526 151 512 2.81e-62 219
Msa0118540 MtrunA17_Chr7g0263771 31.042 451 279 8 100 541 75 502 1.80e-61 214
Msa0118540 MtrunA17_Chr2g0297261 30.976 410 251 9 133 537 17 399 8.78e-57 196
Msa0118540 MtrunA17_Chr2g0310581 33.333 402 241 8 135 530 36 416 8.90e-57 199
Msa0118540 MtrunA17_Chr4g0070981 31.701 388 245 5 151 538 40 407 1.47e-55 193
Msa0118540 MtrunA17_Chr2g0299681 30.345 435 267 8 105 538 8 407 2.90e-55 192
Msa0118540 MtrunA17_Chr4g0040761 34.987 383 221 9 153 525 20 384 4.34e-55 200
Msa0118540 MtrunA17_Chr6g0475251 34.383 381 225 9 151 523 102 465 8.98e-55 197
Msa0118540 MtrunA17_Chr8g0342861 30.926 443 254 11 105 538 8 407 1.30e-54 191
Msa0118540 MtrunA17_Chr1g0204391 35.101 396 216 12 144 515 36 414 2.09e-54 194
Msa0118540 MtrunA17_Chr2g0329931 33.165 395 230 9 151 538 40 407 3.83e-54 189
Msa0118540 MtrunA17_Chr3g0114081 35.635 362 195 10 175 514 39 384 1.08e-52 190
Msa0118540 MtrunA17_Chr7g0236831 29.434 530 295 13 122 589 136 648 1.98e-51 189
Msa0118540 MtrunA17_Chr4g0003441 35.143 350 204 7 171 517 127 456 9.65e-51 182
Msa0118540 MtrunA17_Chr8g0386451 35.509 383 222 13 171 536 307 681 1.50e-50 186
Msa0118540 MtrunA17_Chr7g0247191 31.768 362 223 8 151 511 149 487 5.50e-50 181
Msa0118540 MtrunA17_Chr6g0466611 31.436 404 261 9 150 546 140 534 7.32e-50 184
Msa0118540 MtrunA17_Chr7g0247221 30.939 362 226 7 151 511 142 480 2.08e-49 179
Msa0118540 MtrunA17_Chr7g0247181 31.215 362 225 8 151 511 139 477 2.58e-49 179
Msa0118540 MtrunA17_Chr1g0149251 36.145 332 189 7 190 518 2 313 7.54e-49 173
Msa0118540 MtrunA17_Chr8g0347161 34.375 352 212 10 166 508 116 457 1.61e-48 178
Msa0118540 MtrunA17_Chr8g0347151 35.925 373 219 10 164 525 213 576 1.43e-47 177
Msa0118540 MtrunA17_Chr4g0034411 31.566 415 246 9 149 543 73 469 1.85e-47 177
Msa0118540 MtrunA17_Chr5g0443991 31.807 415 245 11 149 543 73 469 9.49e-46 172
Msa0118540 MtrunA17_Chr8g0347171 33.516 364 225 10 153 508 161 515 1.30e-44 168
Msa0118540 MtrunA17_Chr4g0062301 33.038 339 196 9 175 503 120 437 3.06e-43 163
Msa0118540 MtrunA17_Chr2g0307471 31.332 383 234 8 152 525 91 453 5.58e-43 162
Msa0118540 MtrunA17_Chr2g0301281 29.186 442 236 13 152 525 41 473 1.17e-42 162
Msa0118540 MtrunA17_Chr4g0029191 28.450 471 257 15 152 554 44 502 1.28e-42 162
Msa0118540 MtrunA17_Chr2g0309551 27.051 451 284 9 119 530 82 526 4.82e-36 142
Msa0118540 MtrunA17_Chr1g0179761 29.358 436 244 15 116 515 40 447 1.05e-35 140
Msa0118540 MtrunA17_Chr3g0145781 29.340 409 240 15 150 527 130 520 1.61e-34 137
Msa0118540 MtrunA17_Chr1g0192021 27.187 423 246 10 140 515 11 418 4.52e-33 134
Msa0118540 MtrunA17_Chr5g0429221 27.419 372 240 9 150 515 1 348 2.57e-29 120
Msa0118540 MtrunA17_Chr4g0074521 30.303 396 226 13 137 503 67 441 2.14e-28 119
Msa0118540 MtrunA17_Chr3g0137901 42.424 132 69 1 387 518 25 149 1.14e-26 107
Msa0118540 MtrunA17_Chr1g0169331 25.000 400 245 10 173 537 12 391 6.05e-26 110
Msa0118540 MtrunA17_Chr4g0004301 25.187 401 217 10 189 525 70 451 4.78e-24 105
Msa0118540 MtrunA17_Chr8g0349951 34.591 159 94 3 150 307 8 157 2.80e-23 96.7
Msa0118540 MtrunA17_Chr4g0039471 31.579 209 124 4 152 356 223 416 5.92e-23 101
Msa0118540 MtrunA17_Chr4g0039471 29.952 207 93 6 152 358 2 156 2.70e-17 84.7
Msa0118540 MtrunA17_Chr5g0434301 24.938 401 218 10 189 525 70 451 8.82e-23 102
Msa0118540 MtrunA17_Chr8g0342851 24.033 362 221 6 181 538 2 313 1.64e-22 99.0
Msa0118540 MtrunA17_Chr4g0062321 32.018 228 132 7 262 481 23 235 3.85e-21 93.2
Msa0118540 MtrunA17_Chr1g0155201 29.299 314 182 12 282 580 14 302 2.00e-19 90.1
Msa0118540 MtrunA17_Chr8g0354761 25.762 361 225 10 175 519 31 364 2.70e-19 90.9
Msa0118540 MtrunA17_Chr4g0025141 33.333 189 105 5 340 515 15 195 6.39e-19 86.7
Msa0118540 MtrunA17_Chr3g0137891 34.463 177 101 5 190 364 2 165 9.20e-18 82.8
Msa0118540 MtrunA17_Chr8g0364251 33.951 162 95 5 378 534 400 554 1.41e-17 86.3
Msa0118540 MtrunA17_Chr8g0364251 25.641 234 144 8 112 331 59 276 5.01e-11 65.5
Msa0118540 MtrunA17_Chr0c30g0494091 31.441 229 135 6 137 355 67 283 6.82e-16 80.1
Msa0118540 MtrunA17_Chr4g0058601 46.269 67 36 0 475 541 9 75 4.19e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118540 AT2G42520.2 73.860 570 118 7 7 554 2 562 0.0 823
Msa0118540 AT2G42520.1 73.860 570 118 7 7 554 2 562 0.0 823
Msa0118540 AT2G42520.3 73.860 570 118 7 7 554 2 562 0.0 823
Msa0118540 AT3G58570.1 73.070 557 135 5 5 554 1 549 0.0 790
Msa0118540 AT3G58510.1 71.870 583 127 10 7 570 2 566 0.0 777
Msa0118540 AT3G58510.3 71.870 583 127 10 7 570 2 566 0.0 777
Msa0118540 AT3G58510.2 71.870 583 127 10 7 570 2 566 0.0 777
Msa0118540 AT5G63120.2 46.229 411 195 8 136 541 152 541 3.69e-114 353
Msa0118540 AT1G55150.1 42.459 431 221 7 139 561 87 498 1.49e-111 343
Msa0118540 AT1G55150.2 42.691 431 220 8 139 561 112 523 1.18e-110 342
Msa0118540 AT5G14610.6 44.391 419 212 7 139 555 149 548 3.33e-109 342
Msa0118540 AT5G14610.2 44.391 419 212 7 139 555 149 548 3.93e-109 342
Msa0118540 AT5G14610.5 44.391 419 212 7 139 555 157 556 6.17e-109 342
Msa0118540 AT3G01540.1 44.869 419 210 7 139 555 146 545 6.82e-108 338
Msa0118540 AT3G01540.4 44.869 419 210 7 139 555 146 545 7.97e-108 337
Msa0118540 AT3G01540.2 44.869 419 210 7 139 555 146 545 7.97e-108 337
Msa0118540 AT3G01540.3 44.869 419 210 7 139 555 146 545 7.97e-108 337
Msa0118540 AT5G14610.7 45.736 387 189 7 171 555 50 417 3.33e-103 322
Msa0118540 AT5G14610.3 45.736 387 189 7 171 555 50 417 3.33e-103 322
Msa0118540 AT5G14610.1 44.146 410 208 7 148 555 226 616 1.69e-102 326
Msa0118540 AT3G06480.1 43.415 410 213 6 139 546 423 815 1.16e-97 322
Msa0118540 AT2G47330.1 41.822 428 228 7 121 546 202 610 1.26e-94 307
Msa0118540 AT2G33730.1 39.387 424 235 5 135 545 297 711 3.16e-94 305
Msa0118540 AT5G51280.1 39.558 407 225 6 141 540 136 528 1.84e-91 294
Msa0118540 AT1G20920.2 38.592 412 235 4 136 544 176 572 2.12e-90 297
Msa0118540 AT4G33370.1 38.537 410 229 6 139 540 85 479 2.66e-90 290
Msa0118540 AT1G20920.4 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT1G20920.6 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT1G20920.3 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT1G20920.7 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT1G20920.5 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT1G20920.1 38.835 412 234 5 136 544 514 910 9.00e-89 298
Msa0118540 AT5G63120.1 45.640 344 161 8 136 474 152 474 3.11e-88 282
Msa0118540 AT5G63120.3 45.640 344 161 8 136 474 152 474 3.38e-88 282
Msa0118540 AT5G63120.4 45.640 344 161 8 136 474 152 474 3.38e-88 282
Msa0118540 AT5G63120.5 45.640 344 161 8 136 474 152 474 3.38e-88 282
Msa0118540 AT1G31970.1 39.480 423 224 10 150 562 115 515 6.24e-85 275
Msa0118540 AT5G14610.4 38.688 442 245 10 43 476 56 479 3.10e-83 270
Msa0118540 AT3G02065.3 35.322 419 258 5 136 553 95 501 2.68e-78 257
Msa0118540 AT3G02065.2 35.322 419 258 5 136 553 95 501 2.68e-78 257
Msa0118540 AT3G09620.1 37.284 405 207 6 136 537 381 741 3.03e-77 265
Msa0118540 AT3G09620.2 37.284 405 207 6 136 537 382 742 3.39e-77 265
Msa0118540 AT3G06480.2 43.228 347 178 6 139 483 423 752 3.96e-77 261
Msa0118540 AT1G28180.1 40.701 371 194 6 181 545 3 353 4.17e-77 249
Msa0118540 AT5G60990.1 34.521 449 268 6 150 583 8 445 1.27e-73 243
Msa0118540 AT3G22330.1 36.856 369 212 7 173 538 126 476 1.10e-69 237
Msa0118540 AT5G26742.1 38.522 379 210 8 153 525 104 465 2.45e-69 239
Msa0118540 AT5G26742.2 38.522 379 210 8 153 525 104 465 2.49e-69 239
Msa0118540 AT3G22310.2 35.864 382 224 8 173 551 138 501 1.20e-68 234
Msa0118540 AT3G02065.1 34.492 374 232 5 181 553 3 364 1.42e-68 227
Msa0118540 AT3G22310.1 35.864 382 224 8 173 551 138 501 1.64e-68 234
Msa0118540 AT5G26742.3 40.634 347 183 8 185 525 43 372 6.33e-67 231
Msa0118540 AT3G09720.2 30.870 460 287 9 87 540 76 510 3.59e-65 223
Msa0118540 AT3G09720.1 30.870 460 287 9 87 540 76 510 3.59e-65 223
Msa0118540 AT4G16630.1 35.765 425 247 8 109 526 123 528 3.21e-64 226
Msa0118540 AT1G16280.1 35.598 368 213 7 166 527 70 419 9.11e-61 210
Msa0118540 AT1G51380.1 29.798 396 252 6 149 541 20 392 7.43e-58 199
Msa0118540 AT3G19760.1 29.923 391 250 6 149 537 33 401 1.55e-57 199
Msa0118540 AT1G77030.1 34.293 382 225 7 153 525 30 394 8.04e-56 203
Msa0118540 AT1G72730.1 31.328 399 254 5 140 538 30 408 1.27e-54 191
Msa0118540 AT3G13920.1 30.184 434 268 8 105 538 8 406 1.55e-54 191
Msa0118540 AT3G13920.2 30.935 417 253 8 105 521 8 389 6.95e-54 189
Msa0118540 AT3G13920.5 30.935 417 253 8 105 521 12 393 9.47e-54 189
Msa0118540 AT4G00660.1 31.215 362 225 7 151 511 131 469 1.70e-53 191
Msa0118540 AT4G00660.2 31.215 362 225 7 151 511 131 469 1.70e-53 191
Msa0118540 AT1G54270.1 33.159 383 228 8 162 538 46 406 2.04e-53 188
Msa0118540 AT3G13920.3 30.882 408 250 7 131 538 21 396 2.10e-53 187
Msa0118540 AT1G54270.2 33.245 379 228 8 162 538 46 401 2.20e-53 188
Msa0118540 AT3G13920.4 30.184 434 263 10 105 538 8 401 3.68e-53 187
Msa0118540 AT2G45810.1 31.492 362 224 6 151 511 154 492 3.77e-52 187
Msa0118540 AT5G11170.1 35.549 346 200 7 171 513 66 391 1.86e-51 183
Msa0118540 AT5G11200.1 35.549 346 200 7 171 513 66 391 1.86e-51 183
Msa0118540 AT3G61240.2 30.663 362 227 6 151 511 124 462 2.85e-51 184
Msa0118540 AT3G61240.1 30.663 362 227 6 151 511 124 462 2.85e-51 184
Msa0118540 AT5G05450.1 35.279 394 212 15 140 514 13 382 4.55e-51 186
Msa0118540 AT4G09730.1 31.387 411 259 9 150 547 111 511 1.24e-50 185
Msa0118540 AT1G71370.1 34.783 391 225 12 135 514 2 373 6.14e-50 182
Msa0118540 AT5G08610.1 35.613 351 209 8 166 508 397 738 6.26e-48 180
Msa0118540 AT5G11170.2 35.780 327 187 7 190 513 2 308 4.97e-47 169
Msa0118540 AT5G08620.1 34.699 366 211 11 175 525 104 456 2.05e-46 172
Msa0118540 AT5G11200.3 32.817 387 196 9 171 513 66 432 2.30e-46 170
Msa0118540 AT5G62190.1 33.046 348 224 5 176 523 121 459 3.88e-46 173
Msa0118540 AT5G54910.1 32.614 417 236 13 150 543 70 464 4.91e-46 174
Msa0118540 AT5G11200.2 30.864 405 198 9 171 513 66 450 7.24e-46 169
Msa0118540 AT5G65900.1 33.983 359 212 8 151 503 154 493 7.90e-46 172
Msa0118540 AT5G63630.1 34.844 353 209 8 166 508 69 410 2.64e-44 166
Msa0118540 AT1G63250.1 35.159 347 205 9 172 508 349 685 2.77e-44 169
Msa0118540 AT5G63630.2 34.844 353 209 8 166 508 263 604 3.43e-44 168
Msa0118540 AT2G40700.1 28.668 443 239 11 152 525 31 465 4.40e-44 166
Msa0118540 AT3G18600.1 30.667 375 239 8 132 503 71 427 7.87e-43 162
Msa0118540 AT2G07750.1 34.682 346 208 9 172 508 396 732 8.55e-43 165
Msa0118540 AT3G16840.1 28.510 463 254 12 117 514 156 606 2.97e-41 160
Msa0118540 AT3G16840.2 29.138 429 227 12 151 514 191 607 1.39e-40 158
Msa0118540 AT3G53110.1 31.343 402 226 14 136 515 76 449 1.01e-39 152
Msa0118540 AT1G12770.2 26.403 481 288 12 97 525 56 522 1.28e-36 144
Msa0118540 AT1G12770.1 26.403 481 288 12 97 525 56 522 1.28e-36 144
Msa0118540 AT3G06980.1 31.122 392 222 15 152 514 375 747 3.11e-34 139
Msa0118540 AT1G71280.2 32.958 355 179 13 135 477 2 309 5.69e-34 132
Msa0118540 AT1G71280.1 32.687 361 182 15 135 482 2 314 1.20e-33 134
Msa0118540 AT4G34910.1 27.525 396 234 8 151 504 46 430 1.24e-29 124
Msa0118540 AT1G51380.2 28.287 251 161 4 149 398 20 252 2.70e-26 109
Msa0118540 AT5G19210.2 28.650 363 205 13 171 503 96 434 3.65e-26 112
Msa0118540 AT1G51380.4 29.439 214 135 3 149 361 20 218 1.81e-25 107
Msa0118540 AT4G15850.1 26.768 396 204 15 189 519 73 447 2.58e-25 110
Msa0118540 AT1G51380.3 29.439 214 135 3 149 361 20 218 2.82e-25 107
Msa0118540 AT1G28180.2 44.828 116 62 1 181 296 3 116 1.21e-22 94.0
Msa0118540 AT5G19210.1 27.236 246 141 9 282 503 46 277 6.65e-15 76.6
Msa0118540 AT5G19210.3 27.236 246 141 9 282 503 46 277 6.65e-15 76.6
Msa0118540 AT1G59990.1 32.773 119 77 2 413 530 427 543 1.36e-13 74.3
Msa0118540 AT1G59990.2 32.773 119 77 2 413 530 427 543 1.39e-13 74.3

Find 230 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCTAGTTATATCTTTC+TGG 0.065066 1_3:-41403917 Msa0118540:CDS
TTAATATGTGCATGCTAATT+AGG 0.082344 1_3:+41401805 None:intergenic
ATAGGGGTTTGGGTAATAAT+TGG 0.216352 1_3:-41406678 Msa0118540:CDS
ACAAATTACCTGTATCTCTT+TGG 0.227870 1_3:+41405592 None:intergenic
TCCGGCCGAGCCACCTTCTT+TGG 0.231327 1_3:-41406710 Msa0118540:CDS
ACGTTTGCGGAAATAGATTT+AGG 0.245357 1_3:-41406385 Msa0118540:CDS
TTGGCTGTATGTAACTTAAT+AGG 0.280325 1_3:-41401690 Msa0118540:three_prime_UTR
AGCAGATCGGATGCTGGATA+TGG 0.291721 1_3:-41405705 Msa0118540:CDS
AGTAAGGAATGCATGGATTT+AGG 0.296210 1_3:+41402031 None:intergenic
TAATATGTGCATGCTAATTA+GGG 0.298326 1_3:+41401806 None:intergenic
CTTCTTTGGTGGCTAATGAT+AGG 0.307197 1_3:-41406696 Msa0118540:CDS
AACAGGACGAGCTGGTAAAA+TGG 0.309296 1_3:-41402447 Msa0118540:CDS
TCAACTATCTTTCTTATTTG+AGG 0.314818 1_3:+41405674 None:intergenic
TGAGAGAGGTGTTGATATTC+TGG 0.320367 1_3:-41405810 Msa0118540:CDS
ACAGCCAACCGAGATAAAAT+TGG 0.324225 1_3:+41401705 None:intergenic
GGAGGATACGGTGGTGGTGG+TGG 0.324429 1_3:-41406604 Msa0118540:CDS
TGTTTGATAAGAAAACTTCT+TGG 0.325171 1_3:+41405997 None:intergenic
TAGGGGTTTGGGTAATAATT+GGG 0.327406 1_3:-41406677 Msa0118540:CDS
GCTATACCGATTTCGCTTGC+TGG 0.327789 1_3:-41406298 Msa0118540:CDS
GGTGGCTAATGATAGGGGTT+TGG 0.328176 1_3:-41406689 Msa0118540:CDS
GGAACATAAGCCGGCTTGAC+TGG 0.329541 1_3:+41406763 None:intergenic
TGTAAACTACTATATTGTTT+TGG 0.331556 1_3:-41401923 Msa0118540:three_prime_UTR
GCTTGCTGGGAGAGATTTGA+TGG 0.333161 1_3:-41406284 Msa0118540:CDS
CGATTATAAGCGGAATCCTT+AGG 0.336460 1_3:-41406216 Msa0118540:CDS
TTTCCTGCAACTTGCATTCA+TGG 0.338462 1_3:-41403505 Msa0118540:CDS
CAAATTACCTGTATCTCTTT+GGG 0.339534 1_3:+41405593 None:intergenic
GCTTGTGCTCAGACGGGTTC+AGG 0.340784 1_3:-41406262 Msa0118540:CDS
GTCAAGGTCGTAGTTGCTTA+TGG 0.341012 1_3:-41405971 Msa0118540:CDS
TTCTTTGGTGGCTAATGATA+GGG 0.344987 1_3:-41406695 Msa0118540:CDS
TGTAACAAGTGCTTGGGATT+AGG 0.346044 1_3:-41402147 Msa0118540:exon
GGGGAATGGGAGGGAGCGTG+TGG 0.349109 1_3:-41406551 Msa0118540:CDS
ACCATACCCTCCGCCATAAC+TGG 0.352232 1_3:+41402175 None:intergenic
CACATAATCATCAATGTCAT+TGG 0.353409 1_3:+41402484 None:intergenic
GAGGAGGAGCGGGGAATGGG+AGG 0.354579 1_3:-41406561 Msa0118540:CDS
AATGGGAGGGAGCGTGTGGG+TGG 0.354702 1_3:-41406547 Msa0118540:CDS
ACATCCGTTGCCACTAGAAT+TGG 0.361842 1_3:+41402563 None:intergenic
TGGATTTGCTTGAGAGGGCT+AGG 0.362367 1_3:-41405766 Msa0118540:CDS
GTGGCTAATGATAGGGGTTT+GGG 0.364803 1_3:-41406688 Msa0118540:CDS
CGCTAATTCATTCTCATGTT+GGG 0.367537 1_3:-41402112 Msa0118540:three_prime_UTR
GGTGGAAACGGTGGTGGTTA+TGG 0.369732 1_3:-41402206 Msa0118540:CDS
AACATCACGGCCACCAAAAC+GGG 0.371256 1_3:+41402268 None:intergenic
GGTGGTGGTGGTGGCTTTGG+TGG 0.377367 1_3:-41406592 Msa0118540:CDS
AATAAAGGAAATGATTACTA+TGG 0.381802 1_3:-41402227 Msa0118540:CDS
GACAAAGATTTCCTGTAGTA+AGG 0.382851 1_3:+41402015 None:intergenic
AGTTATATCTTTCTGGCTGT+TGG 0.386936 1_3:-41403910 Msa0118540:CDS
AGGTCTGACTTTAGTGTTTG+TGG 0.388354 1_3:-41403578 Msa0118540:CDS
TTTCTGGCTGTTGGAAGGGT+TGG 0.391022 1_3:-41403901 Msa0118540:CDS
GTGGTGGTGGTGGCTTTGGT+GGG 0.394661 1_3:-41406591 Msa0118540:CDS
CTTTGTCAATGATCCACAAC+TGG 0.399349 1_3:-41401999 Msa0118540:three_prime_UTR
GTGGTAGAAACAAGCGGACT+GGG 0.409015 1_3:-41402295 Msa0118540:CDS
CTAAGGATTCCGCTTATAAT+CGG 0.410751 1_3:+41406217 None:intergenic
TCGCCATGAATGCAAGTTGC+AGG 0.411185 1_3:+41403502 None:intergenic
TCTCTCCCAGCAAGCGAAAT+CGG 0.417914 1_3:+41406292 None:intergenic
AAGGAGAGCTCATATAATAA+AGG 0.419864 1_3:-41402242 Msa0118540:CDS
ATATTACTGGTTTATGTTGT+GGG 0.422901 1_3:-41401884 Msa0118540:three_prime_UTR
GGGAGGGAGCGTGTGGGTGG+AGG 0.429438 1_3:-41406544 Msa0118540:CDS
GGGTTTAACAGAGGAGGAGC+GGG 0.430268 1_3:-41406571 Msa0118540:CDS
CACTTATCCTATCCCCTACT+CGG 0.431850 1_3:-41406144 Msa0118540:CDS
AGGAGTCCTTGCTGCATAAC+GGG 0.432387 1_3:+41402325 None:intergenic
CTCGTCCTGTTCTTCCTATC+CGG 0.432877 1_3:+41402459 None:intergenic
GCCAGTTATGGCGGAGGGTA+TGG 0.434353 1_3:-41402176 Msa0118540:CDS
GAACACTGCTTGTGTGTTAA+CGG 0.434525 1_3:-41403529 Msa0118540:CDS
AACACTGCTTGTGTGTTAAC+GGG 0.434919 1_3:-41403528 Msa0118540:CDS
CAAATTACTGTCATTGAAGA+AGG 0.435697 1_3:+41402412 None:intergenic
ACAGAGGAGGAGCGGGGAAT+GGG 0.437491 1_3:-41406564 Msa0118540:CDS
AAGAAAGATAGTTGAACAAA+TGG 0.437695 1_3:-41405666 Msa0118540:CDS
TACTCGGGAGCTCTCTTGTC+AGG 0.438746 1_3:-41406128 Msa0118540:intron
ACCAAAGAAGGTGGCTCGGC+CGG 0.440213 1_3:+41406709 None:intergenic
TAACATCACGGCCACCAAAA+CGG 0.440534 1_3:+41402267 None:intergenic
TCGCTAATTCATTCTCATGT+TGG 0.441868 1_3:-41402113 Msa0118540:three_prime_UTR
GGATACGGTGGTGGTGGTGG+TGG 0.448116 1_3:-41406601 Msa0118540:CDS
TATGGTGTTCCTGCCAGTTA+TGG 0.448820 1_3:-41402188 Msa0118540:CDS
GATATTACTGGTTTATGTTG+TGG 0.448938 1_3:-41401885 Msa0118540:three_prime_UTR
AACATTTCCCAAAGAGATAC+AGG 0.451243 1_3:-41405600 Msa0118540:intron
GGCCGCGCGCCCAGTCAAGC+CGG 0.452642 1_3:-41406773 Msa0118540:CDS
GCGTGTGGGTGGAGGAAGAC+GGG 0.453713 1_3:-41406536 Msa0118540:CDS
ATATCTTTCTGGCTGTTGGA+AGG 0.455309 1_3:-41403906 Msa0118540:CDS
GGTGGAGGATACGGTGGTGG+TGG 0.456825 1_3:-41406607 Msa0118540:CDS
CAATGACAGTAATTTGTCAA+TGG 0.461949 1_3:-41402405 Msa0118540:CDS
GTATTCTCTTGCTCAGTAAA+CGG 0.462472 1_3:+41406481 None:intergenic
GGCCGAGCCACCTTCTTTGG+TGG 0.465097 1_3:-41406707 Msa0118540:CDS
ACAGGACGAGCTGGTAAAAT+GGG 0.466923 1_3:-41402446 Msa0118540:CDS
GACAAGAGAGCTCCCGAGTA+GGG 0.467329 1_3:+41406131 None:intergenic
GTTTACTGAGCAAGAGAATA+CGG 0.468139 1_3:-41406479 Msa0118540:CDS
GATTATAAGCGGAATCCTTA+GGG 0.468514 1_3:-41406215 Msa0118540:CDS
AACAGAGGAGGAGCGGGGAA+TGG 0.469033 1_3:-41406565 Msa0118540:CDS
TTTGGGGCTGGGAGACAAGT+AGG 0.470337 1_3:-41406628 Msa0118540:CDS
GATATTCTGGTGGCAACTCC+AGG 0.472374 1_3:-41405797 Msa0118540:CDS
GTCAAGGTGTAACAAGTGCT+TGG 0.472671 1_3:-41402154 Msa0118540:CDS
TATGCAGCAAGGACTCCTTA+TGG 0.473458 1_3:-41402320 Msa0118540:CDS
GCCTCCCGTGAATACGTTTG+CGG 0.476065 1_3:-41406398 Msa0118540:CDS
TAACCGATCAATGGCTGCTC+CGG 0.476102 1_3:-41406728 Msa0118540:CDS
TTTGTCAATGGCTAAACCAT+TGG 0.477577 1_3:-41402393 Msa0118540:CDS
ATCCATGCATTCCTTACTAC+AGG 0.480935 1_3:-41402026 Msa0118540:three_prime_UTR
TATCTTTCTGGCTGTTGGAA+GGG 0.484079 1_3:-41403905 Msa0118540:CDS
TTTGATGGCTTGTGCTCAGA+CGG 0.484435 1_3:-41406269 Msa0118540:CDS
GAAGAAAGGTGCTGATGCAT+TGG 0.489379 1_3:-41403551 Msa0118540:CDS
GGTGGTAGAAACAAGCGGAC+TGG 0.489930 1_3:-41402296 Msa0118540:CDS
AAAGGAAATGATTACTATGG+TGG 0.493627 1_3:-41402224 Msa0118540:CDS
CAACTTTGAGAACAGCTACA+TGG 0.493651 1_3:-41406831 Msa0118540:CDS
GGTAGTTATTAATGAAGTGT+AGG 0.495637 1_3:+41401754 None:intergenic
GTCTGTCTCATGCCTGGAGG+AGG 0.495808 1_3:+41405638 None:intergenic
GTGCACCGGATAGGAAGAAC+AGG 0.496326 1_3:-41402464 Msa0118540:CDS
CTATACCGATTTCGCTTGCT+GGG 0.497481 1_3:-41406297 Msa0118540:CDS
GCAGATCGGATGCTGGATAT+GGG 0.498479 1_3:-41405704 Msa0118540:CDS
AGGAGGAGCGGGGAATGGGA+GGG 0.498506 1_3:-41406560 Msa0118540:CDS
AGCAGCGTCTGTCTCATGCC+TGG 0.502465 1_3:+41405632 None:intergenic
GCATAACGGGTGAGCCATGC+AGG 0.503294 1_3:+41402338 None:intergenic
TTGTTTCTACCACCACCATA+AGG 0.503855 1_3:+41402305 None:intergenic
ACATAATCATCAATGTCATT+GGG 0.504262 1_3:+41402485 None:intergenic
CAATGCAGCTAATGCTTCAT+CGG 0.504871 1_3:-41406794 Msa0118540:CDS
TTCTTATCAAACAGGGGTCA+AGG 0.505657 1_3:-41405987 Msa0118540:CDS
GTTTGAAATTCTGTAGAAGA+GGG 0.512689 1_3:-41401950 Msa0118540:three_prime_UTR
TCATCAACATCATTCTCAAA+CGG 0.513975 1_3:+41406505 None:intergenic
CTATCATTAGCCACCAAAGA+AGG 0.514585 1_3:+41406697 None:intergenic
TCATCTTCGTAACCGATCAA+TGG 0.515937 1_3:-41406737 Msa0118540:CDS
AGCAAATCCACCAATCGTCC+TGG 0.519237 1_3:+41405779 None:intergenic
GGTATAGCATACCTCTGAAC+CGG 0.519441 1_3:+41406313 None:intergenic
AGGAGCACCGATCACCCAAC+AGG 0.519807 1_3:-41405948 Msa0118540:intron
GGATTTGCTTGAGAGGGCTA+GGG 0.520609 1_3:-41405765 Msa0118540:CDS
GATTGGTGGATTTGCTTGAG+AGG 0.520897 1_3:-41405772 Msa0118540:CDS
GTAGTTATTAATGAAGTGTA+GGG 0.522761 1_3:+41401755 None:intergenic
GGTGGCAACTCCAGGACGAT+TGG 0.523074 1_3:-41405789 Msa0118540:CDS
TTCTCCCCACTCGTCTCCAC+AGG 0.523767 1_3:+41406427 None:intergenic
AGACAAGTAGGTGGAGGATA+CGG 0.524332 1_3:-41406616 Msa0118540:CDS
GAACATAAGCCGGCTTGACT+GGG 0.524981 1_3:+41406764 None:intergenic
TTTACTGAGCAAGAGAATAC+GGG 0.527137 1_3:-41406478 Msa0118540:CDS
AGCCGGCTTGACTGGGCGCG+CGG 0.527297 1_3:+41406771 None:intergenic
TGATGAAGCAGATCGGATGC+TGG 0.527612 1_3:-41405711 Msa0118540:CDS
GATGATTATGTGCACCGGAT+AGG 0.527907 1_3:-41402473 Msa0118540:CDS
CAGCAAAAGCAAACCAGTTG+TGG 0.528401 1_3:+41401986 None:intergenic
AGAGCTCCCGAGTAGGGGAT+AGG 0.529713 1_3:+41406137 None:intergenic
TTCCTGTAGTAAGGAATGCA+TGG 0.531327 1_3:+41402024 None:intergenic
CGGCCGGAGCAGCCATTGAT+CGG 0.531645 1_3:+41406725 None:intergenic
CAAATGGACATGCCTCCTCC+AGG 0.531714 1_3:-41405650 Msa0118540:CDS
TCAAGGTGTAACAAGTGCTT+GGG 0.532427 1_3:-41402153 Msa0118540:CDS
AAGGAGTCCTTGCTGCATAA+CGG 0.532448 1_3:+41402324 None:intergenic
GTTCCTGCCAGTTATGGCGG+AGG 0.540492 1_3:-41402182 Msa0118540:CDS
AGCGTGTGGGTGGAGGAAGA+CGG 0.544917 1_3:-41406537 Msa0118540:CDS
AGGGGTTTGGGTAATAATTG+GGG 0.545276 1_3:-41406676 Msa0118540:CDS
TTGATGGCTTGTGCTCAGAC+GGG 0.545968 1_3:-41406268 Msa0118540:CDS
GTGTTTGTGGAAACGAAGAA+AGG 0.546167 1_3:-41403565 Msa0118540:CDS
TACCCTCCGCCATAACTGGC+AGG 0.546471 1_3:+41402179 None:intergenic
TATTTCCGCAAACGTATTCA+CGG 0.546694 1_3:+41406393 None:intergenic
TCTTTGGTGGCTAATGATAG+GGG 0.550688 1_3:-41406694 Msa0118540:CDS
AATGATTACTATGGTGGAAA+CGG 0.551471 1_3:-41402218 Msa0118540:CDS
GGCAACTCCAGGACGATTGG+TGG 0.553332 1_3:-41405786 Msa0118540:CDS
TTTATGTTGTGGGTAGTATG+TGG 0.553930 1_3:-41401874 Msa0118540:three_prime_UTR
GGCTTTGGTGGGTTTAACAG+AGG 0.554691 1_3:-41406580 Msa0118540:CDS
TGGTGGCCGTGATGTTAGGA+AGG 0.558530 1_3:-41402261 Msa0118540:CDS
CACTCCAATTCTAGTGGCAA+CGG 0.558952 1_3:-41402567 Msa0118540:CDS
TGACAAGAGAAGCCACCTCA+TGG 0.560777 1_3:-41403830 Msa0118540:CDS
GAAATTCTGTAGAAGAGGGA+GGG 0.562680 1_3:-41401946 Msa0118540:three_prime_UTR
GCAAGGACTCCTTATGGTGG+TGG 0.564052 1_3:-41402314 Msa0118540:CDS
CTCAAAGACCACGTGTGGCA+CGG 0.564315 1_3:-41406183 Msa0118540:CDS
ATAGGAAGAACAGGACGAGC+TGG 0.564587 1_3:-41402455 Msa0118540:CDS
ATATTCCTGTGGAGACGAGT+GGG 0.566423 1_3:-41406432 Msa0118540:CDS
AGATGAGGAGGAACATAAGC+CGG 0.566852 1_3:+41406754 None:intergenic
AACTTTGAGAACAGCTACAT+GGG 0.566954 1_3:-41406830 Msa0118540:CDS
AGCCACCAAAGAAGGTGGCT+CGG 0.568542 1_3:+41406705 None:intergenic
AAAATAACCTGTTGGGTGAT+CGG 0.572239 1_3:+41405941 None:intergenic
TGAAATTCTGTAGAAGAGGG+AGG 0.573097 1_3:-41401947 Msa0118540:three_prime_UTR
GCATTGAGATCATTCAAGAC+TGG 0.575269 1_3:-41402593 Msa0118540:CDS
TACTCTTTGAGCAATTAGAT+CGG 0.575437 1_3:+41403870 None:intergenic
TTTGAGCATACTGCTCCCTA+AGG 0.575748 1_3:+41406200 None:intergenic
GTAGGTGGAGGATACGGTGG+TGG 0.578316 1_3:-41406610 Msa0118540:CDS
GGTTTGAAATTCTGTAGAAG+AGG 0.578896 1_3:-41401951 Msa0118540:three_prime_UTR
TGAAACCGACACCGGTTCAG+AGG 0.581133 1_3:-41406324 Msa0118540:CDS
ATTTCCGCAAACGTATTCAC+GGG 0.581521 1_3:+41406394 None:intergenic
ATTGGTGGATTTGCTTGAGA+GGG 0.582228 1_3:-41405771 Msa0118540:CDS
CAGTTGCGGGAGCTTGAGAG+AGG 0.583458 1_3:-41405824 Msa0118540:CDS
TTTGGTGGGTTTAACAGAGG+AGG 0.585863 1_3:-41406577 Msa0118540:CDS
GGGAATGGGAGGGAGCGTGT+GGG 0.587644 1_3:-41406550 Msa0118540:CDS
TACTATGGTGGAAACGGTGG+TGG 0.589805 1_3:-41402212 Msa0118540:CDS
GGTGTTCCTGCCAGTTATGG+CGG 0.592814 1_3:-41402185 Msa0118540:CDS
TTTCTCTCTGAGCATGAAGG+AGG 0.593891 1_3:+41403806 None:intergenic
GGCTCACCCGTTATGCAGCA+AGG 0.594047 1_3:-41402331 Msa0118540:CDS
CAGAGAGAAAATGATGTGAA+TGG 0.597153 1_3:-41403793 Msa0118540:CDS
GGTAGAAACAAGCGGACTGG+GGG 0.597859 1_3:-41402293 Msa0118540:CDS
TTCCTGCCAGTTATGGCGGA+GGG 0.597902 1_3:-41402181 Msa0118540:CDS
TGGGTTTAACAGAGGAGGAG+CGG 0.599864 1_3:-41406572 Msa0118540:CDS
GCAACGGATGTTGCAGCACG+TGG 0.601102 1_3:-41402551 Msa0118540:CDS
GCAAACGTATTCACGGGAGG+CGG 0.604661 1_3:+41406400 None:intergenic
TCAAAGAGTAGAATATGTGC+TGG 0.606920 1_3:-41403857 Msa0118540:CDS
TGACAAGAGAGCTCCCGAGT+AGG 0.612221 1_3:+41406130 None:intergenic
AGAAAATGATGTGAATGGCA+AGG 0.613108 1_3:-41403788 Msa0118540:intron
ACAAGAGAGCTCCCGAGTAG+GGG 0.617221 1_3:+41406132 None:intergenic
TGGTAGAAACAAGCGGACTG+GGG 0.618436 1_3:-41402294 Msa0118540:CDS
GGGGATAGGATAAGTGCGAG+AGG 0.619384 1_3:+41406151 None:intergenic
GCTGGGAGACAAGTAGGTGG+AGG 0.620887 1_3:-41406622 Msa0118540:CDS
TAGCTCTTGATGAAGCAGAT+CGG 0.621564 1_3:-41405718 Msa0118540:CDS
TGTAACTTAATAGGTTCTGA+TGG 0.623195 1_3:-41401681 None:intergenic
GCATACCTCTGAACCGGTGT+CGG 0.624694 1_3:+41406319 None:intergenic
TCTTGCATCAGATCAGCCAA+TGG 0.629103 1_3:+41402377 None:intergenic
AGCTCTCCTTCCTAACATCA+CGG 0.629638 1_3:+41402255 None:intergenic
GAATCGTTGATTAAGAAGCG+TGG 0.631655 1_3:-41406914 Msa0118540:five_prime_UTR
TGTGGGTGGAGGAAGACGGG+AGG 0.633411 1_3:-41406533 Msa0118540:CDS
TATGGCGGAGGGTATGGTCA+AGG 0.633849 1_3:-41402170 Msa0118540:CDS
ATTGATCGGTTACGAAGATG+AGG 0.637149 1_3:+41406739 None:intergenic
TCCGCAAACGTATTCACGGG+AGG 0.641164 1_3:+41406397 None:intergenic
ATTGGCTGATCTGATGCAAG+AGG 0.641218 1_3:-41402375 Msa0118540:CDS
TCATTAGCCACCAAAGAAGG+TGG 0.641664 1_3:+41406700 None:intergenic
GCATGGATTTAGGAAAACCA+TGG 0.643218 1_3:+41402041 None:intergenic
TATTCCACGTGTAGCACATG+TGG 0.646595 1_3:-41402522 Msa0118540:CDS
TGCTTATGATGATATTCCTG+TGG 0.648043 1_3:-41406443 Msa0118540:CDS
GTAGTGGAAAATAACCTGTT+GGG 0.649862 1_3:+41405934 None:intergenic
CATGAAGGAGGTCCATGAGG+TGG 0.651399 1_3:+41403818 None:intergenic
ACATTGATGATTATGTGCAC+CGG 0.653916 1_3:-41402478 Msa0118540:CDS
CAAATCAAGAAGTACCTGCA+TGG 0.655342 1_3:-41402352 Msa0118540:CDS
GGTTTAACAGAGGAGGAGCG+GGG 0.655998 1_3:-41406570 Msa0118540:CDS
TGGAAACACTCCAATTCTAG+TGG 0.656487 1_3:-41402573 Msa0118540:CDS
TAAGCAGTCCGTGCCACACG+TGG 0.659665 1_3:+41406175 None:intergenic
ACTTATCCTATCCCCTACTC+GGG 0.663829 1_3:-41406143 Msa0118540:CDS
GATATTCCTGTGGAGACGAG+TGG 0.666031 1_3:-41406433 Msa0118540:CDS
GTATGCTCAAAGACCACGTG+TGG 0.668416 1_3:-41406188 Msa0118540:CDS
GGGGCTGGGAGACAAGTAGG+TGG 0.673887 1_3:-41406625 Msa0118540:CDS
GATCGGTTACGAAGATGAGG+AGG 0.675869 1_3:+41406742 None:intergenic
TGTTTCACAGATACATGACG+AGG 0.678920 1_3:-41406020 Msa0118540:intron
AGCGTCTGTCTCATGCCTGG+AGG 0.679639 1_3:+41405635 None:intergenic
GAGCATGAAGGAGGTCCATG+AGG 0.681402 1_3:+41403815 None:intergenic
TAAGTATGTGAAACCGACAC+CGG 0.684063 1_3:-41406332 Msa0118540:CDS
AAGGTCGTAGTTGCTTATGG+AGG 0.686644 1_3:-41405968 Msa0118540:CDS
GCAGCAAGGACTCCTTATGG+TGG 0.693000 1_3:-41402317 Msa0118540:CDS
CAAGTAGGTGGAGGATACGG+TGG 0.693155 1_3:-41406613 Msa0118540:CDS
GATTACTATGGTGGAAACGG+TGG 0.697976 1_3:-41402215 Msa0118540:CDS
TATTCCTGTGGAGACGAGTG+GGG 0.710004 1_3:-41406431 Msa0118540:CDS
TTACTGAGCAAGAGAATACG+GGG 0.714021 1_3:-41406477 Msa0118540:CDS
GAGAGGTGTTGATATTCTGG+TGG 0.718235 1_3:-41405807 Msa0118540:CDS
TTTACCACATGTGCTACACG+TGG 0.724158 1_3:+41402518 None:intergenic
ATGGTGGTGGTAGAAACAAG+CGG 0.731166 1_3:-41402301 Msa0118540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAATAAAAAATT+AGG + chr1_3:41401911-41401930 None:intergenic 0.0%
!!! ATTTGAGTTTTAAATTTATA+AGG - chr1_3:41406025-41406044 Msa0118540:intron 10.0%
!! AAACAATAAAAACAAAACAT+TGG + chr1_3:41403017-41403036 None:intergenic 15.0%
!!! ACATACTTTTTACAATAAAT+GGG + chr1_3:41403573-41403592 None:intergenic 15.0%
!!! AACATACTTTTTACAATAAA+TGG + chr1_3:41403574-41403593 None:intergenic 15.0%
!!! TTGTTTCTTTAATTTAGAAT+TGG - chr1_3:41403614-41403633 Msa0118540:intron 15.0%
!!! AAAATAGCTTTTGATTTAAA+AGG - chr1_3:41403773-41403792 Msa0118540:intron 15.0%
!!! AAATAGCTTTTGATTTAAAA+GGG - chr1_3:41403774-41403793 Msa0118540:intron 15.0%
!!! AATTGATTTTTGAAGTATTT+TGG - chr1_3:41404065-41404084 Msa0118540:intron 15.0%
!!! ATGTTAATCTTTACTTATTT+TGG - chr1_3:41404215-41404234 Msa0118540:intron 15.0%
!!! TTTTTGAAATAATTATAGTC+AGG - chr1_3:41404807-41404826 Msa0118540:intron 15.0%
!! TGATAGAATTTAATAACTAA+TGG + chr1_3:41406321-41406340 None:intergenic 15.0%
!!! TTTCAATTTTATTTCAGCTT+AGG - chr1_3:41401976-41401995 Msa0118540:three_prime_UTR 20.0%
!! CTTACTAAAACTCAATAAAA+AGG + chr1_3:41403170-41403189 None:intergenic 20.0%
!!! CTTTTTATTGAGTTTTAGTA+AGG - chr1_3:41403168-41403187 Msa0118540:intron 20.0%
!!! TATTGTAAAAAGTATGTTTC+TGG - chr1_3:41403576-41403595 Msa0118540:CDS 20.0%
!!! CTTTAATTTAGAATTGGTAT+AGG - chr1_3:41403620-41403639 Msa0118540:intron 20.0%
!!! AATAGCTTTTGATTTAAAAG+GGG - chr1_3:41403775-41403794 Msa0118540:intron 20.0%
!!! CAATTTGTTTTATTTAACTG+TGG - chr1_3:41403802-41403821 Msa0118540:CDS 20.0%
!!! TTAATCTTTACTTATTTTGG+AGG - chr1_3:41404218-41404237 Msa0118540:intron 20.0%
!!! AATGAGACAAATTTTGAATA+TGG + chr1_3:41404566-41404585 None:intergenic 20.0%
!! ATTCAAAATTTGTCTCATTA+AGG - chr1_3:41404567-41404586 Msa0118540:intron 20.0%
!! ATATTATTACATATTACGAG+TGG - chr1_3:41404674-41404693 Msa0118540:intron 20.0%
!! TCTAATTAATTAACAGAGTT+TGG - chr1_3:41404987-41405006 Msa0118540:intron 20.0%
!! AATATCAGATGTTAGTAAAA+AGG + chr1_3:41405699-41405718 None:intergenic 20.0%
!!! AATTTGCGTTTTTTCTTTTT+TGG - chr1_3:41406179-41406198 Msa0118540:CDS 20.0%
!!! ATTTGCGTTTTTTCTTTTTT+GGG - chr1_3:41406180-41406199 Msa0118540:CDS 20.0%
!! AATAAAGGAAATGATTACTA+TGG - chr1_3:41406825-41406844 Msa0118540:CDS 20.0%
!!! TGTAAACTACTATATTGTTT+TGG - chr1_3:41407129-41407148 Msa0118540:intron 20.0%
!! TGGAAAGGAAAAATAATATT+AGG + chr1_3:41407322-41407341 None:intergenic 20.0%
!!! ATAAAATTGGTTTTATGGAA+AGG + chr1_3:41407337-41407356 None:intergenic 20.0%
! AAAATTAGGATTATGCGAAT+CGG + chr1_3:41401897-41401916 None:intergenic 25.0%
! TTCATAATCTGTATATGACT+AGG - chr1_3:41402973-41402992 Msa0118540:intron 25.0%
! TGTTTGATAAGAAAACTTCT+TGG + chr1_3:41403058-41403077 None:intergenic 25.0%
!! AAGAAGTTTTCTTATCAAAC+AGG - chr1_3:41403057-41403076 Msa0118540:intron 25.0%
!! AGAAGTTTTCTTATCAAACA+GGG - chr1_3:41403058-41403077 Msa0118540:intron 25.0%
!! ATACTATTTGATTTCAGTTG+CGG - chr1_3:41403214-41403233 Msa0118540:intron 25.0%
!! TCAACTATCTTTCTTATTTG+AGG + chr1_3:41403381-41403400 None:intergenic 25.0%
! AAGAAAGATAGTTGAACAAA+TGG - chr1_3:41403386-41403405 Msa0118540:intron 25.0%
! AAAAAAACACAAATGTTCCA+GGG + chr1_3:41403537-41403556 None:intergenic 25.0%
! TAAAAAAACACAAATGTTCC+AGG + chr1_3:41403538-41403557 None:intergenic 25.0%
! TATTGTATGTATTGAATCGA+AGG + chr1_3:41403875-41403894 None:intergenic 25.0%
!!! GTTTGGTTTTGATTGAATTA+AGG - chr1_3:41404013-41404032 Msa0118540:intron 25.0%
! ATAAATAAGACTCAGTTTCA+TGG + chr1_3:41404197-41404216 None:intergenic 25.0%
! TCTATAGATTGATAAGAGTA+TGG + chr1_3:41404409-41404428 None:intergenic 25.0%
!! GTTGAAGAAATAGTTCTTTT+TGG - chr1_3:41404532-41404551 Msa0118540:intron 25.0%
! TTATAGTCAGGATTAAATGA+TGG - chr1_3:41404819-41404838 Msa0118540:intron 25.0%
!!! CTCAATTAAGCATTTTTTTG+TGG - chr1_3:41405440-41405459 Msa0118540:intron 25.0%
!! AAAACAAAAGAAGCTTCTTT+TGG + chr1_3:41405876-41405895 None:intergenic 25.0%
! AAAAAAAAATCCTCCAAAGT+AGG + chr1_3:41405964-41405983 None:intergenic 25.0%
! AAATTGAAATTTCGAAGCAT+CGG + chr1_3:41406164-41406183 None:intergenic 25.0%
! TGAGCGAATTTAATAACTAA+TGG + chr1_3:41406358-41406377 None:intergenic 25.0%
! AAAAGTCCTAACACAATATT+GGG + chr1_3:41406387-41406406 None:intergenic 25.0%
! ACATAATCATCAATGTCATT+GGG + chr1_3:41406570-41406589 None:intergenic 25.0%
!!! ATATTACTGGTTTATGTTGT+GGG - chr1_3:41407168-41407187 Msa0118540:intron 25.0%
! TAATATGTGCATGCTAATTA+GGG + chr1_3:41407249-41407268 None:intergenic 25.0%
! TTAATATGTGCATGCTAATT+AGG + chr1_3:41407250-41407269 None:intergenic 25.0%
! GTAGTTATTAATGAAGTGTA+GGG + chr1_3:41407300-41407319 None:intergenic 25.0%
!! CCATAAAACCAATTTTATCT+CGG - chr1_3:41407339-41407358 Msa0118540:five_prime_UTR 25.0%
AAAAATCTTCATCTCCTTCA+AGG - chr1_3:41401837-41401856 Msa0118540:three_prime_UTR 30.0%
! TCGAATTTTAAGCAGGATTT+TGG - chr1_3:41402406-41402425 Msa0118540:CDS 30.0%
! CGAATTTTAAGCAGGATTTT+GGG - chr1_3:41402407-41402426 Msa0118540:CDS 30.0%
! GAATTTTAAGCAGGATTTTG+GGG - chr1_3:41402408-41402427 Msa0118540:CDS 30.0%
TCATCAACATCATTCTCAAA+CGG + chr1_3:41402550-41402569 None:intergenic 30.0%
! TTTTGCTTTCCGATTATAAG+CGG - chr1_3:41402826-41402845 Msa0118540:intron 30.0%
! GAAGTTTTCTTATCAAACAG+GGG - chr1_3:41403059-41403078 Msa0118540:intron 30.0%
! TACTATTTGATTTCAGTTGC+GGG - chr1_3:41403215-41403234 Msa0118540:intron 30.0%
CAAATTACCTGTATCTCTTT+GGG + chr1_3:41403462-41403481 None:intergenic 30.0%
ACAAATTACCTGTATCTCTT+TGG + chr1_3:41403463-41403482 None:intergenic 30.0%
!!! GACTTGTTATTTTTTGCATG+AGG - chr1_3:41403502-41403521 Msa0118540:CDS 30.0%
AATTGAGATTGCCATAATTC+AGG - chr1_3:41403676-41403695 Msa0118540:intron 30.0%
ATGTTCAAACACCTGAATTA+TGG + chr1_3:41403690-41403709 None:intergenic 30.0%
AACATAACTCCAAGATAACT+AGG + chr1_3:41403996-41404015 None:intergenic 30.0%
AGTTATCTTGGAGTTATGTT+TGG - chr1_3:41403996-41404015 Msa0118540:intron 30.0%
CGATACATGATTCAAAAAAG+TGG - chr1_3:41404136-41404155 Msa0118540:intron 30.0%
!!! TCTTTACTTATTTTGGAGGA+AGG - chr1_3:41404222-41404241 Msa0118540:intron 30.0%
!!! CTTTACTTATTTTGGAGGAA+GGG - chr1_3:41404223-41404242 Msa0118540:intron 30.0%
ACCTATTCTAATAATCCTCA+AGG - chr1_3:41404340-41404359 Msa0118540:intron 30.0%
TCCTTGAGGATTATTAGAAT+AGG + chr1_3:41404344-41404363 None:intergenic 30.0%
! GAACTATTTCTTCAACTCTA+AGG + chr1_3:41404528-41404547 None:intergenic 30.0%
CAAAATTTGTCTCATTAAGG+TGG - chr1_3:41404570-41404589 Msa0118540:intron 30.0%
AATGAATGAAGCATGGTTAT+AGG + chr1_3:41404730-41404749 None:intergenic 30.0%
ATAACCATGCTTCATTCATT+TGG - chr1_3:41404730-41404749 Msa0118540:intron 30.0%
!! AAATGATGGTGATGTAGTTT+TGG - chr1_3:41404833-41404852 Msa0118540:intron 30.0%
!! AATGATGGTGATGTAGTTTT+GGG - chr1_3:41404834-41404853 Msa0118540:intron 30.0%
!! GGGATAAGTTGAAGTTTTTA+TGG - chr1_3:41404855-41404874 Msa0118540:intron 30.0%
TCTTGCTAGTTATATCTTTC+TGG - chr1_3:41405135-41405154 Msa0118540:intron 30.0%
TACTCTTTGAGCAATTAGAT+CGG + chr1_3:41405185-41405204 None:intergenic 30.0%
ATTCAAACTTGTACATGTGT+TGG - chr1_3:41405314-41405333 Msa0118540:intron 30.0%
CACTAACAAAATGTAAACTG+CGG + chr1_3:41405340-41405359 None:intergenic 30.0%
ACAGTCGTTTATTTAAGAGT+AGG - chr1_3:41405396-41405415 Msa0118540:intron 30.0%
TTTAAGAGTAGGAAGATTTC+TGG - chr1_3:41405407-41405426 Msa0118540:intron 30.0%
! ATGTAGAACTTAAAAGCACA+AGG + chr1_3:41405723-41405742 None:intergenic 30.0%
CATTCTCAATGAGACTTTAA+CGG - chr1_3:41405740-41405759 Msa0118540:CDS 30.0%
ATTCTCAATGAGACTTTAAC+GGG - chr1_3:41405741-41405760 Msa0118540:CDS 30.0%
TTCACTATAGTTGAAATGAC+AGG - chr1_3:41405894-41405913 Msa0118540:intron 30.0%
ATGCGCTAAGAAATTTCAAT+AGG + chr1_3:41406083-41406102 None:intergenic 30.0%
ATTGAAATTTCTTAGCGCAT+TGG - chr1_3:41406083-41406102 Msa0118540:intron 30.0%
!!! TTTTTTCTTTTTTGGGTGCA+TGG - chr1_3:41406187-41406206 Msa0118540:CDS 30.0%
!!! TTTTTAGTTGTTGTCAACCA+TGG - chr1_3:41406217-41406236 Msa0118540:CDS 30.0%
AATGGAACATCATAATACCA+TGG + chr1_3:41406237-41406256 None:intergenic 30.0%
!! TATGATGTTCCATTGTTTTG+TGG - chr1_3:41406243-41406262 Msa0118540:CDS 30.0%
!! ATGATGTTCCATTGTTTTGT+GGG - chr1_3:41406244-41406263 Msa0118540:CDS 30.0%
ATTCAATTCCCACAAAACAA+TGG + chr1_3:41406255-41406274 None:intergenic 30.0%
CAAAAGTCCTAACACAATAT+TGG + chr1_3:41406388-41406407 None:intergenic 30.0%
AATGTAATTGTTCTGTTTGC+AGG - chr1_3:41406425-41406444 Msa0118540:CDS 30.0%
CACATAATCATCAATGTCAT+TGG + chr1_3:41406571-41406590 None:intergenic 30.0%
CAAATTACTGTCATTGAAGA+AGG + chr1_3:41406643-41406662 None:intergenic 30.0%
! CAATGACAGTAATTTGTCAA+TGG - chr1_3:41406647-41406666 Msa0118540:CDS 30.0%
AAGGAGAGCTCATATAATAA+AGG - chr1_3:41406810-41406829 Msa0118540:CDS 30.0%
AAAGGAAATGATTACTATGG+TGG - chr1_3:41406828-41406847 Msa0118540:CDS 30.0%
! AATGATTACTATGGTGGAAA+CGG - chr1_3:41406834-41406853 Msa0118540:CDS 30.0%
! AAGTTGTATTTTCTCAACCA+TGG - chr1_3:41406994-41407013 Msa0118540:intron 30.0%
! GTTTGAAATTCTGTAGAAGA+GGG - chr1_3:41407102-41407121 Msa0118540:intron 30.0%
!!! TATATTGTTTTGGAGACTCA+AGG - chr1_3:41407139-41407158 Msa0118540:intron 30.0%
!!! ATATTGTTTTGGAGACTCAA+GGG - chr1_3:41407140-41407159 Msa0118540:intron 30.0%
!! GATATTACTGGTTTATGTTG+TGG - chr1_3:41407167-41407186 Msa0118540:intron 30.0%
!! TGTGGTGTTTTGAATTTGAT+AGG - chr1_3:41407196-41407215 Msa0118540:intron 30.0%
!! GTGGTGTTTTGAATTTGATA+GGG - chr1_3:41407197-41407216 Msa0118540:intron 30.0%
GGTAGTTATTAATGAAGTGT+AGG + chr1_3:41407301-41407320 None:intergenic 30.0%
!!! CCGAGATAAAATTGGTTTTA+TGG + chr1_3:41407342-41407361 None:intergenic 30.0%
! AAAACCAATTTTATCTCGGT+TGG - chr1_3:41407343-41407362 Msa0118540:five_prime_UTR 30.0%
TTGGCTGTATGTAACTTAAT+AGG - chr1_3:41407362-41407381 Msa0118540:five_prime_UTR 30.0%
!! TTTGAGAGCGTGTTTTTCAA+AGG + chr1_3:41401820-41401839 None:intergenic 35.0%
! GTTTGGATTTTGTACCTTGA+AGG + chr1_3:41401854-41401873 None:intergenic 35.0%
! AACTTTGAGAACAGCTACAT+GGG - chr1_3:41402222-41402241 Msa0118540:CDS 35.0%
! TTCTTTGGTGGCTAATGATA+GGG - chr1_3:41402357-41402376 Msa0118540:CDS 35.0%
ATAGGGGTTTGGGTAATAAT+TGG - chr1_3:41402374-41402393 Msa0118540:CDS 35.0%
TAGGGGTTTGGGTAATAATT+GGG - chr1_3:41402375-41402394 Msa0118540:CDS 35.0%
! TAGTTCGTCGAATTTTAAGC+AGG - chr1_3:41402399-41402418 Msa0118540:CDS 35.0%
GTATTCTCTTGCTCAGTAAA+CGG + chr1_3:41402574-41402593 None:intergenic 35.0%
GTTTACTGAGCAAGAGAATA+CGG - chr1_3:41402573-41402592 Msa0118540:CDS 35.0%
TTTACTGAGCAAGAGAATAC+GGG - chr1_3:41402574-41402593 Msa0118540:CDS 35.0%
TGCTTATGATGATATTCCTG+TGG - chr1_3:41402609-41402628 Msa0118540:intron 35.0%
TATTTCCGCAAACGTATTCA+CGG + chr1_3:41402662-41402681 None:intergenic 35.0%
ACGTTTGCGGAAATAGATTT+AGG - chr1_3:41402667-41402686 Msa0118540:intron 35.0%
CTAAGGATTCCGCTTATAAT+CGG + chr1_3:41402838-41402857 None:intergenic 35.0%
GATTATAAGCGGAATCCTTA+GGG - chr1_3:41402837-41402856 Msa0118540:intron 35.0%
AAAATAACCTGTTGGGTGAT+CGG + chr1_3:41403114-41403133 None:intergenic 35.0%
! GTAGTGGAAAATAACCTGTT+GGG + chr1_3:41403121-41403140 None:intergenic 35.0%
! TGTAGTGGAAAATAACCTGT+TGG + chr1_3:41403122-41403141 None:intergenic 35.0%
CAAACAAACATTGCATGTAG+TGG + chr1_3:41403137-41403156 None:intergenic 35.0%
AACATTTCCCAAAGAGATAC+AGG - chr1_3:41403452-41403471 Msa0118540:intron 35.0%
ATACAGAGTAAGATACGTAC+CGG + chr1_3:41403930-41403949 None:intergenic 35.0%
CTAAAACCTCCTAGTTATCT+TGG - chr1_3:41403984-41404003 Msa0118540:intron 35.0%
ATAACTCCAAGATAACTAGG+AGG + chr1_3:41403993-41404012 None:intergenic 35.0%
AGGGTTACTACTATAGTGTA+AGG - chr1_3:41404242-41404261 Msa0118540:intron 35.0%
CTATAGTGTAAGGATTGAAC+AGG - chr1_3:41404252-41404271 Msa0118540:intron 35.0%
! ATAATCCTCAAGGAAAGTGT+AGG - chr1_3:41404350-41404369 Msa0118540:intron 35.0%
CAATCTATAGAACCTCAATC+TGG - chr1_3:41404418-41404437 Msa0118540:intron 35.0%
!! TTGTTTTTCTGCCAACATCA+AGG + chr1_3:41404448-41404467 None:intergenic 35.0%
ATAACAGAGTCAGACACAAT+TGG + chr1_3:41404613-41404632 None:intergenic 35.0%
! CTCTGTTATGTGGACTAATA+TGG - chr1_3:41404624-41404643 Msa0118540:intron 35.0%
!! ATGATGGTGATGTAGTTTTG+GGG - chr1_3:41404835-41404854 Msa0118540:intron 35.0%
GTCATAGAAACTGTTTGCTT+AGG - chr1_3:41404937-41404956 Msa0118540:intron 35.0%
!! AGTTATATCTTTCTGGCTGT+TGG - chr1_3:41405142-41405161 Msa0118540:intron 35.0%
TCAAAGAGTAGAATATGTGC+TGG - chr1_3:41405195-41405214 Msa0118540:intron 35.0%
CAGAGAGAAAATGATGTGAA+TGG - chr1_3:41405259-41405278 Msa0118540:intron 35.0%
AGAAAATGATGTGAATGGCA+AGG - chr1_3:41405264-41405283 Msa0118540:intron 35.0%
ATTCAAAAACTATGCTGCAC+TGG - chr1_3:41405372-41405391 Msa0118540:intron 35.0%
! TTTTTGTGGTTTTTGCAGCA+AGG - chr1_3:41405454-41405473 Msa0118540:intron 35.0%
TTCTCAATGAGACTTTAACG+GGG - chr1_3:41405742-41405761 Msa0118540:CDS 35.0%
AGTTTATACTGCCACAGAAA+TGG - chr1_3:41405817-41405836 Msa0118540:CDS 35.0%
GTTTATACTGCCACAGAAAT+GGG - chr1_3:41405818-41405837 Msa0118540:CDS 35.0%
!! AAGAAGCTTCTTTTGGAAGA+GGG + chr1_3:41405869-41405888 None:intergenic 35.0%
!! AAAGAAGCTTCTTTTGGAAG+AGG + chr1_3:41405870-41405889 None:intergenic 35.0%
AAAATCCTCCAAAGTAGGAA+GGG + chr1_3:41405959-41405978 None:intergenic 35.0%
AAAAATCCTCCAAAGTAGGA+AGG + chr1_3:41405960-41405979 None:intergenic 35.0%
GTGGGAATTGAATTTCTCTA+TGG - chr1_3:41406262-41406281 Msa0118540:CDS 35.0%
AGCTTTCCCAATATTGTGTT+AGG - chr1_3:41406378-41406397 Msa0118540:CDS 35.0%
! ACATTGATGATTATGTGCAC+CGG - chr1_3:41406574-41406593 Msa0118540:CDS 35.0%
TTTGTCAATGGCTAAACCAT+TGG - chr1_3:41406659-41406678 Msa0118540:CDS 35.0%
TCGCTAATTCATTCTCATGT+TGG - chr1_3:41406939-41406958 Msa0118540:five_prime_UTR 35.0%
CGCTAATTCATTCTCATGTT+GGG - chr1_3:41406940-41406959 Msa0118540:five_prime_UTR 35.0%
AGTAAGGAATGCATGGATTT+AGG + chr1_3:41407024-41407043 None:intergenic 35.0%
GACAAAGATTTCCTGTAGTA+AGG + chr1_3:41407040-41407059 None:intergenic 35.0%
! GGTTTGAAATTCTGTAGAAG+AGG - chr1_3:41407101-41407120 Msa0118540:intron 35.0%
!!! TATTGTTTTGGAGACTCAAG+GGG - chr1_3:41407141-41407160 Msa0118540:intron 35.0%
TTTATGTTGTGGGTAGTATG+TGG - chr1_3:41407178-41407197 Msa0118540:intron 35.0%
GAATCGGATAAGATTGAAGG+AGG + chr1_3:41401881-41401900 None:intergenic 40.0%
TGCGAATCGGATAAGATTGA+AGG + chr1_3:41401884-41401903 None:intergenic 40.0%
! GAATCGTTGATTAAGAAGCG+TGG - chr1_3:41402138-41402157 Msa0118540:exon 40.0%
! CAACTTTGAGAACAGCTACA+TGG - chr1_3:41402221-41402240 Msa0118540:CDS 40.0%
CAATGCAGCTAATGCTTCAT+CGG - chr1_3:41402258-41402277 Msa0118540:CDS 40.0%
ATTGATCGGTTACGAAGATG+AGG + chr1_3:41402316-41402335 None:intergenic 40.0%
TCATCTTCGTAACCGATCAA+TGG - chr1_3:41402315-41402334 Msa0118540:CDS 40.0%
CTATCATTAGCCACCAAAGA+AGG + chr1_3:41402358-41402377 None:intergenic 40.0%
! CTTCTTTGGTGGCTAATGAT+AGG - chr1_3:41402356-41402375 Msa0118540:CDS 40.0%
! TCTTTGGTGGCTAATGATAG+GGG - chr1_3:41402358-41402377 Msa0118540:CDS 40.0%
AGGGGTTTGGGTAATAATTG+GGG - chr1_3:41402376-41402395 Msa0118540:CDS 40.0%
TTACTGAGCAAGAGAATACG+GGG - chr1_3:41402575-41402594 Msa0118540:CDS 40.0%
ATTTCCGCAAACGTATTCAC+GGG + chr1_3:41402661-41402680 None:intergenic 40.0%
TAAGTATGTGAAACCGACAC+CGG - chr1_3:41402720-41402739 Msa0118540:intron 40.0%
CGATTATAAGCGGAATCCTT+AGG - chr1_3:41402836-41402855 Msa0118540:intron 40.0%
TGTTTCACAGATACATGACG+AGG - chr1_3:41403032-41403051 Msa0118540:intron 40.0%
TTCTTATCAAACAGGGGTCA+AGG - chr1_3:41403065-41403084 Msa0118540:intron 40.0%
!! TGAGAGAGGTGTTGATATTC+TGG - chr1_3:41403242-41403261 Msa0118540:intron 40.0%
!! ATTGGTGGATTTGCTTGAGA+GGG - chr1_3:41403281-41403300 Msa0118540:intron 40.0%
TAGCTCTTGATGAAGCAGAT+CGG - chr1_3:41403334-41403353 Msa0118540:intron 40.0%
AAAACACAAATGTTCCAGGG+AGG + chr1_3:41403534-41403553 None:intergenic 40.0%
! TCAAGGTTGGCTATTTGTTG+GGG + chr1_3:41403743-41403762 None:intergenic 40.0%
! CTCAAGGTTGGCTATTTGTT+GGG + chr1_3:41403744-41403763 None:intergenic 40.0%
! TCTCAAGGTTGGCTATTTGT+TGG + chr1_3:41403745-41403764 None:intergenic 40.0%
AAATAGCCAACCTTGAGAGT+AGG - chr1_3:41403747-41403766 Msa0118540:intron 40.0%
AATAGCCAACCTTGAGAGTA+GGG - chr1_3:41403748-41403767 Msa0118540:intron 40.0%
!! CTATTTTTCCCCTACTCTCA+AGG + chr1_3:41403760-41403779 None:intergenic 40.0%
TGTATTGCAAAACACCCAAC+TGG - chr1_3:41403945-41403964 Msa0118540:intron 40.0%
AAACACCCAACTGGTGAATA+TGG - chr1_3:41403954-41403973 Msa0118540:intron 40.0%
CCTTACCATATTCACCAGTT+GGG + chr1_3:41403962-41403981 None:intergenic 40.0%
CCAACTGGTGAATATGGTAA+GGG - chr1_3:41403960-41403979 Msa0118540:intron 40.0%
GAATAGGTTGTCGCTAAACA+CGG + chr1_3:41404328-41404347 None:intergenic 40.0%
CTATAGAACCTCAATCTGGA+TGG - chr1_3:41404422-41404441 Msa0118540:intron 40.0%
TGTCTCATTAAGGTGGAAAG+CGG - chr1_3:41404577-41404596 Msa0118540:intron 40.0%
TTGTGTCTGACTCTGTTATG+TGG - chr1_3:41404614-41404633 Msa0118540:intron 40.0%
CTGCAGTGCATTCAAATGAA+GGG + chr1_3:41405098-41405117 None:intergenic 40.0%
TCTGCAGTGCATTCAAATGA+AGG + chr1_3:41405099-41405118 None:intergenic 40.0%
!! ATATCTTTCTGGCTGTTGGA+AGG - chr1_3:41405146-41405165 Msa0118540:intron 40.0%
!! TATCTTTCTGGCTGTTGGAA+GGG - chr1_3:41405147-41405166 Msa0118540:intron 40.0%
! CATTTTCTCTCTGAGCATGA+AGG + chr1_3:41405252-41405271 None:intergenic 40.0%
AGGTCTGACTTTAGTGTTTG+TGG - chr1_3:41405474-41405493 Msa0118540:intron 40.0%
GTGTTTGTGGAAACGAAGAA+AGG - chr1_3:41405487-41405506 Msa0118540:intron 40.0%
GAACACTGCTTGTGTGTTAA+CGG - chr1_3:41405523-41405542 Msa0118540:intron 40.0%
AACACTGCTTGTGTGTTAAC+GGG - chr1_3:41405524-41405543 Msa0118540:intron 40.0%
TTTCCTGCAACTTGCATTCA+TGG - chr1_3:41405547-41405566 Msa0118540:intron 40.0%
!! TTTTGGAAGAGGGGGAAATT+AGG + chr1_3:41405859-41405878 None:intergenic 40.0%
!! AGAAGCTTCTTTTGGAAGAG+GGG + chr1_3:41405868-41405887 None:intergenic 40.0%
! GATGGGCTTTCATGGTAATT+TGG + chr1_3:41405922-41405941 None:intergenic 40.0%
TCTTAGCGCATTGGATATGT+AGG - chr1_3:41406092-41406111 Msa0118540:intron 40.0%
!! GCATCGGTTCTATGGTTTAA+TGG + chr1_3:41406148-41406167 None:intergenic 40.0%
!! ATTTCGAAGCATCGGTTCTA+TGG + chr1_3:41406156-41406175 None:intergenic 40.0%
!!! TTTCTTTTTTGGGTGCATGG+TGG - chr1_3:41406190-41406209 Msa0118540:CDS 40.0%
GCATTGAGATCATTCAAGAC+TGG - chr1_3:41406459-41406478 Msa0118540:CDS 40.0%
TGGAAACACTCCAATTCTAG+TGG - chr1_3:41406479-41406498 Msa0118540:CDS 40.0%
!! CAAATCAAGAAGTACCTGCA+TGG - chr1_3:41406700-41406719 Msa0118540:CDS 40.0%
!! TTGTTTCTACCACCACCATA+AGG + chr1_3:41406750-41406769 None:intergenic 40.0%
TCAAGGTGTAACAAGTGCTT+GGG - chr1_3:41406899-41406918 Msa0118540:five_prime_UTR 40.0%
TGTAACAAGTGCTTGGGATT+AGG - chr1_3:41406905-41406924 Msa0118540:five_prime_UTR 40.0%
GCATGGATTTAGGAAAACCA+TGG + chr1_3:41407014-41407033 None:intergenic 40.0%
ATCCATGCATTCCTTACTAC+AGG - chr1_3:41407026-41407045 Msa0118540:intron 40.0%
TTCCTGTAGTAAGGAATGCA+TGG + chr1_3:41407031-41407050 None:intergenic 40.0%
CTTTGTCAATGATCCACAAC+TGG - chr1_3:41407053-41407072 Msa0118540:intron 40.0%
TGAAATTCTGTAGAAGAGGG+AGG - chr1_3:41407105-41407124 Msa0118540:intron 40.0%
GAAATTCTGTAGAAGAGGGA+GGG - chr1_3:41407106-41407125 Msa0118540:intron 40.0%
!!! ATTGTTTTGGAGACTCAAGG+GGG - chr1_3:41407142-41407161 Msa0118540:intron 40.0%
!! AGGGTTCTTAGCTTTTGACT+CGG - chr1_3:41407216-41407235 Msa0118540:five_prime_UTR 40.0%
ACAGCCAACCGAGATAAAAT+TGG + chr1_3:41407350-41407369 None:intergenic 40.0%
! TGCGCAACAAAAAGCGTGTT+TGG - chr1_3:41401711-41401730 Msa0118540:three_prime_UTR 45.0%
AGATTGAAGGAGGAGAGGTT+TGG + chr1_3:41401871-41401890 None:intergenic 45.0%
GGATAAGATTGAAGGAGGAG+AGG + chr1_3:41401876-41401895 None:intergenic 45.0%
AGATGAGGAGGAACATAAGC+CGG + chr1_3:41402301-41402320 None:intergenic 45.0%
TCATTAGCCACCAAAGAAGG+TGG + chr1_3:41402355-41402374 None:intergenic 45.0%
GTGGCTAATGATAGGGGTTT+GGG - chr1_3:41402364-41402383 Msa0118540:CDS 45.0%
!!! TTTAAGCAGGATTTTGGGGC+TGG - chr1_3:41402412-41402431 Msa0118540:CDS 45.0%
!!! TTAAGCAGGATTTTGGGGCT+GGG - chr1_3:41402413-41402432 Msa0118540:CDS 45.0%
AGACAAGTAGGTGGAGGATA+CGG - chr1_3:41402436-41402455 Msa0118540:CDS 45.0%
!! TTTGGTGGGTTTAACAGAGG+AGG - chr1_3:41402475-41402494 Msa0118540:CDS 45.0%
ATATTCCTGTGGAGACGAGT+GGG - chr1_3:41402620-41402639 Msa0118540:intron 45.0%
GGTATAGCATACCTCTGAAC+CGG + chr1_3:41402742-41402761 None:intergenic 45.0%
!! CTATACCGATTTCGCTTGCT+GGG - chr1_3:41402755-41402774 Msa0118540:intron 45.0%
! TTTGATGGCTTGTGCTCAGA+CGG - chr1_3:41402783-41402802 Msa0118540:intron 45.0%
TTTGAGCATACTGCTCCCTA+AGG + chr1_3:41402855-41402874 None:intergenic 45.0%
CACTTATCCTATCCCCTACT+CGG - chr1_3:41402908-41402927 Msa0118540:intron 45.0%
ACTTATCCTATCCCCTACTC+GGG - chr1_3:41402909-41402928 Msa0118540:intron 45.0%
GTCAAGGTCGTAGTTGCTTA+TGG - chr1_3:41403081-41403100 Msa0118540:intron 45.0%
AAGGTCGTAGTTGCTTATGG+AGG - chr1_3:41403084-41403103 Msa0118540:intron 45.0%
!! GAGAGGTGTTGATATTCTGG+TGG - chr1_3:41403245-41403264 Msa0118540:intron 45.0%
!! GATTGGTGGATTTGCTTGAG+AGG - chr1_3:41403280-41403299 Msa0118540:intron 45.0%
TAACGTCACTTCTGTACTCG+TGG - chr1_3:41403652-41403671 Msa0118540:intron 45.0%
ATAGCCAACCTTGAGAGTAG+GGG - chr1_3:41403749-41403768 Msa0118540:intron 45.0%
! TTTTCCCCTACTCTCAAGGT+TGG + chr1_3:41403756-41403775 None:intergenic 45.0%
GATACGAAAACACCCATCAC+CGG - chr1_3:41403908-41403927 Msa0118540:CDS 45.0%
! GTAAGATACGTACCGGTGAT+GGG + chr1_3:41403923-41403942 None:intergenic 45.0%
! AGTAAGATACGTACCGGTGA+TGG + chr1_3:41403924-41403943 None:intergenic 45.0%
CCCAACTGGTGAATATGGTA+AGG - chr1_3:41403959-41403978 Msa0118540:intron 45.0%
CCCTTACCATATTCACCAGT+TGG + chr1_3:41403963-41403982 None:intergenic 45.0%
! GGAAAGTGTAGGCGTGAATT+TGG - chr1_3:41404361-41404380 Msa0118540:intron 45.0%
! AATCTGGATGGCCTTGATGT+TGG - chr1_3:41404434-41404453 Msa0118540:intron 45.0%
CCTGCCAAATGAATGAAGCA+TGG + chr1_3:41404737-41404756 None:intergenic 45.0%
CCATGCTTCATTCATTTGGC+AGG - chr1_3:41404734-41404753 Msa0118540:intron 45.0%
TTTCTCTCTGAGCATGAAGG+AGG + chr1_3:41405249-41405268 None:intergenic 45.0%
TGAATAGCAGCAGTATGCAG+AGG + chr1_3:41405299-41405318 None:intergenic 45.0%
!! GAAGAAAGGTGCTGATGCAT+TGG - chr1_3:41405501-41405520 Msa0118540:intron 45.0%
ACTGCCACAGAAATGGGATT+TGG - chr1_3:41405824-41405843 Msa0118540:CDS 45.0%
GAAGCCAAATCCCATTTCTG+TGG + chr1_3:41405831-41405850 None:intergenic 45.0%
!! GAAGCTTCTTTTGGAAGAGG+GGG + chr1_3:41405867-41405886 None:intergenic 45.0%
! GTGAAAGAGATGGGCTTTCA+TGG + chr1_3:41405930-41405949 None:intergenic 45.0%
CACTCCAATTCTAGTGGCAA+CGG - chr1_3:41406485-41406504 Msa0118540:CDS 45.0%
ACATCCGTTGCCACTAGAAT+TGG + chr1_3:41406492-41406511 None:intergenic 45.0%
TATTCCACGTGTAGCACATG+TGG - chr1_3:41406530-41406549 Msa0118540:CDS 45.0%
TTTACCACATGTGCTACACG+TGG + chr1_3:41406537-41406556 None:intergenic 45.0%
GATGATTATGTGCACCGGAT+AGG - chr1_3:41406579-41406598 Msa0118540:CDS 45.0%
AACAGGACGAGCTGGTAAAA+TGG - chr1_3:41406605-41406624 Msa0118540:CDS 45.0%
ACAGGACGAGCTGGTAAAAT+GGG - chr1_3:41406606-41406625 Msa0118540:CDS 45.0%
AAGGAGTCCTTGCTGCATAA+CGG + chr1_3:41406731-41406750 None:intergenic 45.0%
TATGCAGCAAGGACTCCTTA+TGG - chr1_3:41406732-41406751 Msa0118540:CDS 45.0%
!! ATGGTGGTGGTAGAAACAAG+CGG - chr1_3:41406751-41406770 Msa0118540:CDS 45.0%
TAACATCACGGCCACCAAAA+CGG + chr1_3:41406788-41406807 None:intergenic 45.0%
AGCTCTCCTTCCTAACATCA+CGG + chr1_3:41406800-41406819 None:intergenic 45.0%
! GATTACTATGGTGGAAACGG+TGG - chr1_3:41406837-41406856 Msa0118540:CDS 45.0%
TATGGTGTTCCTGCCAGTTA+TGG - chr1_3:41406864-41406883 Msa0118540:five_prime_UTR 45.0%
GTCAAGGTGTAACAAGTGCT+TGG - chr1_3:41406898-41406917 Msa0118540:five_prime_UTR 45.0%
CAGCAAAAGCAAACCAGTTG+TGG + chr1_3:41407069-41407088 None:intergenic 45.0%
!!! CACAACTGGTTTGCTTTTGC+TGG - chr1_3:41407067-41407086 Msa0118540:intron 45.0%
!!! CTGGTTTGCTTTTGCTGGTT+AGG - chr1_3:41407072-41407091 Msa0118540:intron 45.0%
!! CTTTTGCTGGTTAGGCACAT+AGG - chr1_3:41407080-41407099 Msa0118540:intron 45.0%
!! GGGTTCTTAGCTTTTGACTC+GGG - chr1_3:41407217-41407236 Msa0118540:five_prime_UTR 45.0%
!!! AATATTATTTTAAAACAATT+TGG + chr1_3:41404659-41404678 None:intergenic 5.0%
!! GAACATAAGCCGGCTTGACT+GGG + chr1_3:41402291-41402310 None:intergenic 50.0%
GATCGGTTACGAAGATGAGG+AGG + chr1_3:41402313-41402332 None:intergenic 50.0%
TAACCGATCAATGGCTGCTC+CGG - chr1_3:41402324-41402343 Msa0118540:CDS 50.0%
GGTGGCTAATGATAGGGGTT+TGG - chr1_3:41402363-41402382 Msa0118540:CDS 50.0%
!! GGCTTTGGTGGGTTTAACAG+AGG - chr1_3:41402472-41402491 Msa0118540:CDS 50.0%
TGGGTTTAACAGAGGAGGAG+CGG - chr1_3:41402480-41402499 Msa0118540:CDS 50.0%
GATATTCCTGTGGAGACGAG+TGG - chr1_3:41402619-41402638 Msa0118540:intron 50.0%
TATTCCTGTGGAGACGAGTG+GGG - chr1_3:41402621-41402640 Msa0118540:intron 50.0%
!! GCTATACCGATTTCGCTTGC+TGG - chr1_3:41402754-41402773 Msa0118540:intron 50.0%
TCTCTCCCAGCAAGCGAAAT+CGG + chr1_3:41402763-41402782 None:intergenic 50.0%
! GCTTGCTGGGAGAGATTTGA+TGG - chr1_3:41402768-41402787 Msa0118540:intron 50.0%
! TTGATGGCTTGTGCTCAGAC+GGG - chr1_3:41402784-41402803 Msa0118540:intron 50.0%
GTATGCTCAAAGACCACGTG+TGG - chr1_3:41402864-41402883 Msa0118540:intron 50.0%
GATATTCTGGTGGCAACTCC+AGG - chr1_3:41403255-41403274 Msa0118540:intron 50.0%
AGCAAATCCACCAATCGTCC+TGG + chr1_3:41403276-41403295 None:intergenic 50.0%
! TGGATTTGCTTGAGAGGGCT+AGG - chr1_3:41403286-41403305 Msa0118540:intron 50.0%
! GGATTTGCTTGAGAGGGCTA+GGG - chr1_3:41403287-41403306 Msa0118540:intron 50.0%
TGATGAAGCAGATCGGATGC+TGG - chr1_3:41403341-41403360 Msa0118540:intron 50.0%
AGCAGATCGGATGCTGGATA+TGG - chr1_3:41403347-41403366 Msa0118540:intron 50.0%
GCAGATCGGATGCTGGATAT+GGG - chr1_3:41403348-41403367 Msa0118540:intron 50.0%
GTGGAAATCCTGCTCTGTCA+TGG - chr1_3:41403821-41403840 Msa0118540:CDS 50.0%
ATGCATGACCATGACAGAGC+AGG + chr1_3:41403832-41403851 None:intergenic 50.0%
TCACGCCTACACTTTCCTTG+AGG + chr1_3:41404358-41404377 None:intergenic 50.0%
CATCAAGGCCATCCAGATTG+AGG + chr1_3:41404433-41404452 None:intergenic 50.0%
!! TTTCTGGCTGTTGGAAGGGT+TGG - chr1_3:41405151-41405170 Msa0118540:intron 50.0%
TGACAAGAGAAGCCACCTCA+TGG - chr1_3:41405222-41405241 Msa0118540:intron 50.0%
TCGCCATGAATGCAAGTTGC+AGG + chr1_3:41405553-41405572 None:intergenic 50.0%
GGGAGCAAGGTGAAAGAGAT+GGG + chr1_3:41405939-41405958 None:intergenic 50.0%
AGGGAGCAAGGTGAAAGAGA+TGG + chr1_3:41405940-41405959 None:intergenic 50.0%
ACCTTGCTCCCTTCCTACTT+TGG - chr1_3:41405948-41405967 Msa0118540:intron 50.0%
TCCAAAGTAGGAAGGGAGCA+AGG + chr1_3:41405952-41405971 None:intergenic 50.0%
TTGCTCCCTTCCTACTTTGG+AGG - chr1_3:41405951-41405970 Msa0118540:CDS 50.0%
CTCGTCCTGTTCTTCCTATC+CGG + chr1_3:41406596-41406615 None:intergenic 50.0%
ATAGGAAGAACAGGACGAGC+TGG - chr1_3:41406597-41406616 Msa0118540:CDS 50.0%
AGGAGTCCTTGCTGCATAAC+GGG + chr1_3:41406730-41406749 None:intergenic 50.0%
! GTGGTAGAAACAAGCGGACT+GGG - chr1_3:41406757-41406776 Msa0118540:CDS 50.0%
!! TGGTAGAAACAAGCGGACTG+GGG - chr1_3:41406758-41406777 Msa0118540:CDS 50.0%
AACATCACGGCCACCAAAAC+GGG + chr1_3:41406787-41406806 None:intergenic 50.0%
!! GTTTTGGTGGCCGTGATGTT+AGG - chr1_3:41406787-41406806 Msa0118540:CDS 50.0%
! TACTATGGTGGAAACGGTGG+TGG - chr1_3:41406840-41406859 Msa0118540:CDS 50.0%
CTCAAGGGGGCAGATATTAC+TGG - chr1_3:41407155-41407174 Msa0118540:intron 50.0%
!! GGAACATAAGCCGGCTTGAC+TGG + chr1_3:41402292-41402311 None:intergenic 55.0%
AGCCACCAAAGAAGGTGGCT+CGG + chr1_3:41402350-41402369 None:intergenic 55.0%
! TTTGGGGCTGGGAGACAAGT+AGG - chr1_3:41402424-41402443 Msa0118540:CDS 55.0%
CAAGTAGGTGGAGGATACGG+TGG - chr1_3:41402439-41402458 Msa0118540:CDS 55.0%
GGGTTTAACAGAGGAGGAGC+GGG - chr1_3:41402481-41402500 Msa0118540:CDS 55.0%
GGTTTAACAGAGGAGGAGCG+GGG - chr1_3:41402482-41402501 Msa0118540:CDS 55.0%
GCAAACGTATTCACGGGAGG+CGG + chr1_3:41402655-41402674 None:intergenic 55.0%
GCCTCCCGTGAATACGTTTG+CGG - chr1_3:41402654-41402673 Msa0118540:intron 55.0%
TCCGCAAACGTATTCACGGG+AGG + chr1_3:41402658-41402677 None:intergenic 55.0%
!! TGAAACCGACACCGGTTCAG+AGG - chr1_3:41402728-41402747 Msa0118540:intron 55.0%
GCATACCTCTGAACCGGTGT+CGG + chr1_3:41402736-41402755 None:intergenic 55.0%
CTCAAAGACCACGTGTGGCA+CGG - chr1_3:41402869-41402888 Msa0118540:intron 55.0%
GGGGATAGGATAAGTGCGAG+AGG + chr1_3:41402904-41402923 None:intergenic 55.0%
ACAAGAGAGCTCCCGAGTAG+GGG + chr1_3:41402923-41402942 None:intergenic 55.0%
GACAAGAGAGCTCCCGAGTA+GGG + chr1_3:41402924-41402943 None:intergenic 55.0%
TGACAAGAGAGCTCCCGAGT+AGG + chr1_3:41402925-41402944 None:intergenic 55.0%
TACTCGGGAGCTCTCTTGTC+AGG - chr1_3:41402924-41402943 Msa0118540:intron 55.0%
GGGAGCTCTCTTGTCAGGTT+GGG - chr1_3:41402929-41402948 Msa0118540:intron 55.0%
! GGAGCTCTCTTGTCAGGTTG+GGG - chr1_3:41402930-41402949 Msa0118540:intron 55.0%
CAAATGGACATGCCTCCTCC+AGG - chr1_3:41403402-41403421 Msa0118540:intron 55.0%
CATGAAGGAGGTCCATGAGG+TGG + chr1_3:41405237-41405256 None:intergenic 55.0%
GAGCATGAAGGAGGTCCATG+AGG + chr1_3:41405240-41405259 None:intergenic 55.0%
GTGCACCGGATAGGAAGAAC+AGG - chr1_3:41406588-41406607 Msa0118540:CDS 55.0%
GCAGCAAGGACTCCTTATGG+TGG - chr1_3:41406735-41406754 Msa0118540:CDS 55.0%
GCAAGGACTCCTTATGGTGG+TGG - chr1_3:41406738-41406757 Msa0118540:CDS 55.0%
GGTGGTAGAAACAAGCGGAC+TGG - chr1_3:41406756-41406775 Msa0118540:CDS 55.0%
!! GGTAGAAACAAGCGGACTGG+GGG - chr1_3:41406759-41406778 Msa0118540:CDS 55.0%
TGGTGGCCGTGATGTTAGGA+AGG - chr1_3:41406791-41406810 Msa0118540:CDS 55.0%
! GGTGGAAACGGTGGTGGTTA+TGG - chr1_3:41406846-41406865 Msa0118540:exon 55.0%
GGTGTTCCTGCCAGTTATGG+CGG - chr1_3:41406867-41406886 Msa0118540:five_prime_UTR 55.0%
! TTCCTGCCAGTTATGGCGGA+GGG - chr1_3:41406871-41406890 Msa0118540:five_prime_UTR 55.0%
ACCATACCCTCCGCCATAAC+TGG + chr1_3:41406880-41406899 None:intergenic 55.0%
! TATGGCGGAGGGTATGGTCA+AGG - chr1_3:41406882-41406901 Msa0118540:five_prime_UTR 55.0%
! ACCAAAGAAGGTGGCTCGGC+CGG + chr1_3:41402346-41402365 None:intergenic 60.0%
GCTGGGAGACAAGTAGGTGG+AGG - chr1_3:41402430-41402449 Msa0118540:CDS 60.0%
GTAGGTGGAGGATACGGTGG+TGG - chr1_3:41402442-41402461 Msa0118540:CDS 60.0%
!! GTGGTGGTGGTGGCTTTGGT+GGG - chr1_3:41402461-41402480 Msa0118540:CDS 60.0%
AACAGAGGAGGAGCGGGGAA+TGG - chr1_3:41402487-41402506 Msa0118540:CDS 60.0%
ACAGAGGAGGAGCGGGGAAT+GGG - chr1_3:41402488-41402507 Msa0118540:CDS 60.0%
AGCGTGTGGGTGGAGGAAGA+CGG - chr1_3:41402515-41402534 Msa0118540:CDS 60.0%
TTCTCCCCACTCGTCTCCAC+AGG + chr1_3:41402628-41402647 None:intergenic 60.0%
! GCTTGTGCTCAGACGGGTTC+AGG - chr1_3:41402790-41402809 Msa0118540:intron 60.0%
TAAGCAGTCCGTGCCACACG+TGG + chr1_3:41402880-41402899 None:intergenic 60.0%
AGAGCTCCCGAGTAGGGGAT+AGG + chr1_3:41402918-41402937 None:intergenic 60.0%
CGGGAGCTCTCTTGTCAGGT+TGG - chr1_3:41402928-41402947 Msa0118540:intron 60.0%
!! AGGAGCACCGATCACCCAAC+AGG - chr1_3:41403104-41403123 Msa0118540:intron 60.0%
CAGTTGCGGGAGCTTGAGAG+AGG - chr1_3:41403228-41403247 Msa0118540:intron 60.0%
GGTGGCAACTCCAGGACGAT+TGG - chr1_3:41403263-41403282 Msa0118540:intron 60.0%
GGCAACTCCAGGACGATTGG+TGG - chr1_3:41403266-41403285 Msa0118540:intron 60.0%
GTCTGTCTCATGCCTGGAGG+AGG + chr1_3:41403417-41403436 None:intergenic 60.0%
AGCGTCTGTCTCATGCCTGG+AGG + chr1_3:41403420-41403439 None:intergenic 60.0%
AGCAGCGTCTGTCTCATGCC+TGG + chr1_3:41403423-41403442 None:intergenic 60.0%
GCATGAGGATCTGTCCTCCC+TGG - chr1_3:41403517-41403536 Msa0118540:CDS 60.0%
GCAACGGATGTTGCAGCACG+TGG - chr1_3:41406501-41406520 Msa0118540:CDS 60.0%
!! GCATAACGGGTGAGCCATGC+AGG + chr1_3:41406717-41406736 None:intergenic 60.0%
GGCTCACCCGTTATGCAGCA+AGG - chr1_3:41406721-41406740 Msa0118540:CDS 60.0%
GTTCCTGCCAGTTATGGCGG+AGG - chr1_3:41406870-41406889 Msa0118540:five_prime_UTR 60.0%
TACCCTCCGCCATAACTGGC+AGG + chr1_3:41406876-41406895 None:intergenic 60.0%
! GCCAGTTATGGCGGAGGGTA+TGG - chr1_3:41406876-41406895 Msa0118540:five_prime_UTR 60.0%
CGGCCGGAGCAGCCATTGAT+CGG + chr1_3:41402330-41402349 None:intergenic 65.0%
TCCGGCCGAGCCACCTTCTT+TGG - chr1_3:41402342-41402361 Msa0118540:CDS 65.0%
GGCCGAGCCACCTTCTTTGG+TGG - chr1_3:41402345-41402364 Msa0118540:CDS 65.0%
GGGGCTGGGAGACAAGTAGG+TGG - chr1_3:41402427-41402446 Msa0118540:CDS 65.0%
! GGTGGAGGATACGGTGGTGG+TGG - chr1_3:41402445-41402464 Msa0118540:CDS 65.0%
!! GGAGGATACGGTGGTGGTGG+TGG - chr1_3:41402448-41402467 Msa0118540:CDS 65.0%
!! GGATACGGTGGTGGTGGTGG+TGG - chr1_3:41402451-41402470 Msa0118540:CDS 65.0%
!! GGTGGTGGTGGTGGTGGCTT+TGG - chr1_3:41402457-41402476 Msa0118540:CDS 65.0%
!! GGTGGTGGTGGTGGCTTTGG+TGG - chr1_3:41402460-41402479 Msa0118540:CDS 65.0%
AGGAGGAGCGGGGAATGGGA+GGG - chr1_3:41402492-41402511 Msa0118540:CDS 65.0%
! GGGAATGGGAGGGAGCGTGT+GGG - chr1_3:41402502-41402521 Msa0118540:CDS 65.0%
! AATGGGAGGGAGCGTGTGGG+TGG - chr1_3:41402505-41402524 Msa0118540:CDS 65.0%
GCGTGTGGGTGGAGGAAGAC+GGG - chr1_3:41402516-41402535 Msa0118540:CDS 65.0%
TGTGGGTGGAGGAAGACGGG+AGG - chr1_3:41402519-41402538 Msa0118540:CDS 65.0%
! ACTGGGGGAGCCCGTTTTGG+TGG - chr1_3:41406774-41406793 Msa0118540:CDS 65.0%
GAGGAGGAGCGGGGAATGGG+AGG - chr1_3:41402491-41402510 Msa0118540:CDS 70.0%
! GGGGAATGGGAGGGAGCGTG+TGG - chr1_3:41402501-41402520 Msa0118540:CDS 70.0%
!! CGGACTGGGGGAGCCCGTTT+TGG - chr1_3:41406771-41406790 Msa0118540:CDS 70.0%
!! AGCCGGCTTGACTGGGCGCG+CGG + chr1_3:41402284-41402303 None:intergenic 75.0%
! GGGAGGGAGCGTGTGGGTGG+AGG - chr1_3:41402508-41402527 Msa0118540:CDS 75.0%
! GGCCGCGCGCCCAGTCAAGC+CGG - chr1_3:41402279-41402298 Msa0118540:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41401683 41407391 41401683 ID=Msa0118540;Name=Msa0118540
chr1_3 mRNA 41401683 41407391 41401683 ID=Msa0118540-mRNA-1;Parent=Msa0118540;Name=Msa0118540-mRNA-1;_AED=0.09;_eAED=0.09;_QI=282|1|1|1|0.83|0.71|7|465|606
chr1_3 exon 41401683 41402627 41401683 ID=Msa0118540-mRNA-1:exon:12564;Parent=Msa0118540-mRNA-1
chr1_3 exon 41403489 41403602 41403489 ID=Msa0118540-mRNA-1:exon:12563;Parent=Msa0118540-mRNA-1
chr1_3 exon 41403789 41403956 41403789 ID=Msa0118540-mRNA-1:exon:12562;Parent=Msa0118540-mRNA-1
chr1_3 exon 41405601 41405843 41405601 ID=Msa0118540-mRNA-1:exon:12561;Parent=Msa0118540-mRNA-1
chr1_3 exon 41405949 41406032 41405949 ID=Msa0118540-mRNA-1:exon:12560;Parent=Msa0118540-mRNA-1
chr1_3 exon 41406129 41406966 41406129 ID=Msa0118540-mRNA-1:exon:12559;Parent=Msa0118540-mRNA-1
chr1_3 exon 41407216 41407391 41407216 ID=Msa0118540-mRNA-1:exon:12558;Parent=Msa0118540-mRNA-1
chr1_3 five_prime_UTR 41407216 41407391 41407216 ID=Msa0118540-mRNA-1:five_prime_utr;Parent=Msa0118540-mRNA-1
chr1_3 five_prime_UTR 41406861 41406966 41406861 ID=Msa0118540-mRNA-1:five_prime_utr;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41406129 41406860 41406129 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41405949 41406032 41405949 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41405601 41405843 41405601 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41403789 41403956 41403789 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41403489 41403602 41403489 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 CDS 41402148 41402627 41402148 ID=Msa0118540-mRNA-1:cds;Parent=Msa0118540-mRNA-1
chr1_3 three_prime_UTR 41401683 41402147 41401683 ID=Msa0118540-mRNA-1:three_prime_utr;Parent=Msa0118540-mRNA-1
Gene Sequence

>Msa0118540

ATGTCTGCAACTTTGAGAACAGCTACATGGGCAGATGCTGCTGACAATGCAGCTAATGCTTCATCGGCCGCGCGCCCAGTCAAGCCGGCTTATGTTCCTCCTCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGATACGGTGGTGGTGGTGGTGGCTTTGGTGGGTTTAACAGAGGAGGAGCGGGGAATGGGAGGGAGCGTGTGGGTGGAGGAAGACGGGAGGCGAATCCGTTTGAGAATGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCCGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTCGCACTTATCCTATCCCCTACTCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACAGGGGTCAAGGTCGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTCCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCACGTGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG
Protein sequence

>Msa0118540

MSATLRTATWADAADNAANASSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGFGGFNRGGAGNGRERVGGGRREANPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD*