Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071970 | XP_024634118.1 | 69.231 | 325 | 75 | 6 | 1 | 306 | 1 | 319 | 4.32e-136 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071970 | sp|Q8RYD3|Y3158_ARATH | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 9.34e-44 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071970 | A0A396JQN5 | 69.231 | 325 | 75 | 6 | 1 | 306 | 1 | 319 | 2.07e-136 | 399 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0071970 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024260 | Msa0071970 | 0.814364 | 1.599491e-51 | -8.615850e-47 |
| Msa0071970 | Msa0119930 | 0.820700 | 5.973049e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071970 | MtrunA17_Chr1g0178071 | 69.231 | 325 | 75 | 6 | 1 | 306 | 1 | 319 | 3.98e-140 | 399 |
| Msa0071970 | MtrunA17_Chr7g0266821 | 46.000 | 250 | 96 | 8 | 80 | 307 | 64 | 296 | 4.20e-51 | 171 |
| Msa0071970 | MtrunA17_Chr8g0345771 | 62.037 | 108 | 28 | 3 | 77 | 173 | 172 | 277 | 8.63e-36 | 134 |
| Msa0071970 | MtrunA17_Chr7g0276471 | 61.111 | 108 | 29 | 3 | 77 | 173 | 118 | 223 | 1.55e-34 | 130 |
| Msa0071970 | MtrunA17_Chr5g0422501 | 55.833 | 120 | 38 | 2 | 68 | 172 | 227 | 346 | 3.43e-33 | 126 |
| Msa0071970 | MtrunA17_Chr1g0198661 | 41.081 | 185 | 70 | 6 | 73 | 236 | 188 | 354 | 1.92e-31 | 120 |
| Msa0071970 | MtrunA17_Chr1g0213701 | 42.202 | 109 | 43 | 3 | 58 | 157 | 149 | 246 | 1.15e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071970 | AT3G11580.4 | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 2.59e-45 | 154 |
| Msa0071970 | AT3G11580.2 | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 2.59e-45 | 154 |
| Msa0071970 | AT3G11580.5 | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 2.59e-45 | 154 |
| Msa0071970 | AT3G11580.1 | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 9.49e-45 | 153 |
| Msa0071970 | AT3G11580.3 | 65.833 | 120 | 23 | 3 | 71 | 172 | 23 | 142 | 7.16e-44 | 154 |
| Msa0071970 | AT5G06250.4 | 66.372 | 113 | 21 | 2 | 77 | 172 | 46 | 158 | 5.84e-43 | 149 |
| Msa0071970 | AT5G06250.5 | 66.372 | 113 | 21 | 2 | 77 | 172 | 46 | 158 | 5.95e-43 | 149 |
| Msa0071970 | AT5G06250.2 | 66.372 | 113 | 21 | 2 | 77 | 172 | 46 | 158 | 6.31e-43 | 149 |
| Msa0071970 | AT5G06250.3 | 61.789 | 123 | 30 | 2 | 77 | 182 | 46 | 168 | 9.40e-43 | 148 |
| Msa0071970 | AT5G06250.1 | 61.789 | 123 | 30 | 2 | 77 | 182 | 46 | 168 | 1.10e-42 | 148 |
| Msa0071970 | AT2G36080.4 | 69.811 | 106 | 22 | 2 | 77 | 172 | 38 | 143 | 4.48e-42 | 143 |
| Msa0071970 | AT2G36080.2 | 69.811 | 106 | 22 | 2 | 77 | 172 | 38 | 143 | 4.48e-42 | 143 |
| Msa0071970 | AT2G36080.3 | 69.811 | 106 | 22 | 2 | 77 | 172 | 38 | 143 | 1.17e-41 | 144 |
| Msa0071970 | AT2G36080.1 | 69.811 | 106 | 22 | 2 | 77 | 172 | 38 | 143 | 1.18e-41 | 144 |
| Msa0071970 | AT3G61970.1 | 54.331 | 127 | 47 | 3 | 57 | 172 | 2 | 128 | 1.60e-37 | 135 |
| Msa0071970 | AT2G46870.1 | 61.607 | 112 | 29 | 3 | 73 | 172 | 31 | 140 | 7.77e-36 | 131 |
| Msa0071970 | AT1G68840.2 | 60.000 | 105 | 33 | 1 | 79 | 174 | 190 | 294 | 4.48e-34 | 127 |
| Msa0071970 | AT1G68840.1 | 60.000 | 105 | 33 | 1 | 79 | 174 | 190 | 294 | 4.48e-34 | 127 |
| Msa0071970 | AT1G13260.1 | 58.182 | 110 | 36 | 2 | 79 | 179 | 190 | 298 | 6.27e-34 | 127 |
| Msa0071970 | AT3G25730.1 | 56.364 | 110 | 38 | 2 | 77 | 176 | 183 | 292 | 3.47e-33 | 125 |
| Msa0071970 | AT1G25560.1 | 51.613 | 124 | 45 | 2 | 77 | 185 | 195 | 318 | 1.80e-31 | 120 |
| Msa0071970 | AT1G01030.2 | 55.556 | 108 | 34 | 3 | 77 | 172 | 56 | 161 | 4.35e-31 | 119 |
| Msa0071970 | AT1G01030.1 | 55.556 | 108 | 34 | 3 | 77 | 172 | 56 | 161 | 5.82e-31 | 119 |
| Msa0071970 | AT4G01500.1 | 49.167 | 120 | 39 | 3 | 72 | 173 | 31 | 146 | 1.05e-26 | 107 |
| Msa0071970 | AT1G50680.1 | 44.211 | 95 | 35 | 2 | 79 | 155 | 159 | 253 | 1.18e-16 | 79.7 |
| Msa0071970 | AT1G51120.1 | 43.478 | 92 | 37 | 2 | 79 | 155 | 180 | 271 | 3.68e-16 | 78.6 |
Find 64 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCCTTTGGTTCTGACTTT+GGG | 0.260868 | 1_2:-44371922 | None:intergenic |
| TTCCCACCGGTTTCGTCCTT+TGG | 0.266582 | 1_2:-44371935 | None:intergenic |
| TCTAGAGTACCTTGTGTTAA+TGG | 0.288145 | 1_2:-44372082 | None:intergenic |
| TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1_2:+44370030 | Msa0071970:CDS |
| GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1_2:+44370346 | Msa0071970:CDS |
| TCGTCCTTTGGTTCTGACTT+TGG | 0.367217 | 1_2:-44371923 | None:intergenic |
| AGGTGAGAATTAGAATTAGA+AGG | 0.374977 | 1_2:-44372124 | None:intergenic |
| CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1_2:-44370201 | None:intergenic |
| TCAAGTCAACTTCTAGTTCA+AGG | 0.378492 | 1_2:+44371962 | Msa0071970:CDS |
| TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1_2:-44370202 | None:intergenic |
| AGAAGGTTGATGATATTGAT+AGG | 0.411150 | 1_2:-44372107 | None:intergenic |
| TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1_2:-44370636 | None:intergenic |
| GGTGTTGAAGAATCATGTTC+AGG | 0.437272 | 1_2:-44372021 | None:intergenic |
| TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1_2:+44370490 | Msa0071970:CDS |
| AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1_2:+44370417 | Msa0071970:CDS |
| ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1_2:-44370058 | None:intergenic |
| TCAGAACCAAAGGACGAAAC+CGG | 0.504470 | 1_2:+44371929 | Msa0071970:CDS |
| ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1_2:+44370489 | Msa0071970:CDS |
| AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1_2:+44370534 | Msa0071970:CDS |
| GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1_2:+44370503 | Msa0071970:CDS |
| CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1_2:+44370549 | Msa0071970:CDS |
| TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1_2:-44370295 | None:intergenic |
| ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1_2:+44370595 | Msa0071970:intron |
| AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1_2:+44370325 | Msa0071970:CDS |
| AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1_2:+44370539 | Msa0071970:CDS |
| TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1_2:+44370057 | Msa0071970:CDS |
| AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1_2:+44370594 | Msa0071970:intron |
| GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1_2:-44370273 | None:intergenic |
| CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1_2:+44370675 | Msa0071970:CDS |
| TTGACTTGAACTCTTCCCAC+CGG | 0.575797 | 1_2:-44371948 | None:intergenic |
| GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1_2:+44370285 | Msa0071970:CDS |
| TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1_2:-44370353 | None:intergenic |
| TTGAAGAATCATGTTCAGGT+TGG | 0.578477 | 1_2:-44372017 | None:intergenic |
| ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1_2:-44370610 | None:intergenic |
| GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1_2:+44370524 | Msa0071970:CDS |
| TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1_2:-44370041 | None:intergenic |
| GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1_2:+44370525 | Msa0071970:CDS |
| AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1_2:-44370666 | None:intergenic |
| TTTCAGAAACATCACTCTGG+TGG | 0.596606 | 1_2:+44369964 | Msa0071970:CDS |
| GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1_2:-44370067 | None:intergenic |
| AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1_2:-44370642 | None:intergenic |
| TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1_2:-44370074 | None:intergenic |
| TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1_2:+44370566 | Msa0071970:CDS |
| CATGAAGACATTGATCATGT+TGG | 0.609605 | 1_2:-44370671 | None:intergenic |
| ATCTTTCAGAAACATCACTC+TGG | 0.613066 | 1_2:+44369961 | Msa0071970:CDS |
| GGTCCCAAAGTCAGAACCAA+AGG | 0.613585 | 1_2:+44371919 | Msa0071970:CDS |
| TATAAATCATAAGAACATTG+AGG | 0.619659 | 1_2:-44372042 | None:intergenic |
| AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1_2:+44370520 | Msa0071970:CDS |
| TTTAATATGCCATTAACACA+AGG | 0.629522 | 1_2:+44372073 | Msa0071970:CDS |
| GAACCAAAGGACGAAACCGG+TGG | 0.630994 | 1_2:+44371932 | Msa0071970:CDS |
| CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1_2:+44370519 | Msa0071970:CDS |
| GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1_2:+44370540 | Msa0071970:CDS |
| ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1_2:+44370550 | Msa0071970:CDS |
| CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1_2:+44370201 | Msa0071970:CDS |
| GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1_2:+44370555 | Msa0071970:CDS |
| AACCAAAGGACGAAACCGGT+GGG | 0.646214 | 1_2:+44371933 | Msa0071970:CDS |
| TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1_2:-44370292 | None:intergenic |
| ATTCTAATTCTCACCTCACG+TGG | 0.651337 | 1_2:+44372131 | Msa0071970:CDS |
| CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1_2:+44370491 | Msa0071970:CDS |
| AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1_2:-44370064 | None:intergenic |
| GACATCGTGTTGATAGTCAG+AGG | 0.672367 | 1_2:+44370460 | Msa0071970:CDS |
| GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1_2:-44370023 | None:intergenic |
| ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1_2:-44370071 | None:intergenic |
| GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1_2:+44370521 | Msa0071970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATATATTTATA+TGG | - | chr1_2:44370812-44370831 | None:intergenic | 0.0% |
| !! | ATTATAATTATATATTTATA+TGG | - | chr1_2:44370812-44370831 | None:intergenic | 0.0% |
| !! | AAGAAAAAAAAGAAAAAAAA+AGG | - | chr1_2:44371271-44371290 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | + | chr1_2:44371697-44371716 | Msa0071970:intron | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | + | chr1_2:44371853-44371872 | Msa0071970:intron | 10.0% |
| !! | AAGAAAAAAAAGAAAAAAAA+AGG | - | chr1_2:44371271-44371290 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | + | chr1_2:44371697-44371716 | Msa0071970:intron | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | + | chr1_2:44371853-44371872 | Msa0071970:intron | 10.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | - | chr1_2:44370785-44370804 | None:intergenic | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | + | chr1_2:44371363-44371382 | Msa0071970:intron | 15.0% |
| !!! | CTTCTTTGTTTTTTTTTTTT+TGG | - | chr1_2:44371454-44371473 | None:intergenic | 15.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | - | chr1_2:44370785-44370804 | None:intergenic | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | + | chr1_2:44371363-44371382 | Msa0071970:intron | 15.0% |
| !!! | CTTCTTTGTTTTTTTTTTTT+TGG | - | chr1_2:44371454-44371473 | None:intergenic | 15.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | - | chr1_2:44370786-44370805 | None:intergenic | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | + | chr1_2:44370852-44370871 | Msa0071970:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | - | chr1_2:44371098-44371117 | None:intergenic | 20.0% |
| !!! | AAAGGAAAAATATGGTTTTA+GGG | - | chr1_2:44371197-44371216 | None:intergenic | 20.0% |
| !!! | AAAAGGAAAAATATGGTTTT+AGG | - | chr1_2:44371198-44371217 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAGGAAAAATA+TGG | - | chr1_2:44371205-44371224 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+AGG | - | chr1_2:44371215-44371234 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | - | chr1_2:44371354-44371373 | None:intergenic | 20.0% |
| !! | ATGAAACAATTATATTCTCA+TGG | + | chr1_2:44371474-44371493 | Msa0071970:intron | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | + | chr1_2:44371791-44371810 | Msa0071970:intron | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | - | chr1_2:44371818-44371837 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | - | chr1_2:44371819-44371838 | None:intergenic | 20.0% |
| !!! | AAGGTTTACTTATTTTGTTT+GGG | + | chr1_2:44371981-44372000 | Msa0071970:CDS | 20.0% |
| !! | TATAAATCATAAGAACATTG+AGG | - | chr1_2:44372045-44372064 | None:intergenic | 20.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | - | chr1_2:44370786-44370805 | None:intergenic | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | + | chr1_2:44370852-44370871 | Msa0071970:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | - | chr1_2:44371098-44371117 | None:intergenic | 20.0% |
| !!! | AAAGGAAAAATATGGTTTTA+GGG | - | chr1_2:44371197-44371216 | None:intergenic | 20.0% |
| !!! | AAAAGGAAAAATATGGTTTT+AGG | - | chr1_2:44371198-44371217 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAGGAAAAATA+TGG | - | chr1_2:44371205-44371224 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+AGG | - | chr1_2:44371215-44371234 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | - | chr1_2:44371354-44371373 | None:intergenic | 20.0% |
| !! | ATGAAACAATTATATTCTCA+TGG | + | chr1_2:44371474-44371493 | Msa0071970:intron | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | + | chr1_2:44371791-44371810 | Msa0071970:intron | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | - | chr1_2:44371818-44371837 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | - | chr1_2:44371819-44371838 | None:intergenic | 20.0% |
| !!! | AAGGTTTACTTATTTTGTTT+GGG | + | chr1_2:44371981-44372000 | Msa0071970:CDS | 20.0% |
| !! | TATAAATCATAAGAACATTG+AGG | - | chr1_2:44372045-44372064 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | - | chr1_2:44370248-44370267 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | - | chr1_2:44370249-44370268 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | - | chr1_2:44370781-44370800 | None:intergenic | 25.0% |
| !!! | CTATCAATCAAGTTGAATTA+GGG | - | chr1_2:44370843-44370862 | None:intergenic | 25.0% |
| !!! | ACTATCAATCAAGTTGAATT+AGG | - | chr1_2:44370844-44370863 | None:intergenic | 25.0% |
| !! | CTTGATTGATAGTACTTAAA+TGG | + | chr1_2:44370851-44370870 | Msa0071970:intron | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | + | chr1_2:44370937-44370956 | Msa0071970:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | + | chr1_2:44370976-44370995 | Msa0071970:intron | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | + | chr1_2:44371136-44371155 | Msa0071970:intron | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | + | chr1_2:44371217-44371236 | Msa0071970:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | - | chr1_2:44371573-44371592 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | - | chr1_2:44371769-44371788 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | - | chr1_2:44371817-44371836 | None:intergenic | 25.0% |
| ! | TTATAATGTTTACAGGTAGA+GGG | + | chr1_2:44371898-44371917 | Msa0071970:intron | 25.0% |
| !!! | CAAGGTTTACTTATTTTGTT+TGG | + | chr1_2:44371980-44371999 | Msa0071970:CDS | 25.0% |
| !!! | AGGTTTACTTATTTTGTTTG+GGG | + | chr1_2:44371982-44372001 | Msa0071970:CDS | 25.0% |
| ! | TTTAATATGCCATTAACACA+AGG | + | chr1_2:44372073-44372092 | Msa0071970:CDS | 25.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | - | chr1_2:44370248-44370267 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | - | chr1_2:44370249-44370268 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | - | chr1_2:44370781-44370800 | None:intergenic | 25.0% |
| !!! | CTATCAATCAAGTTGAATTA+GGG | - | chr1_2:44370843-44370862 | None:intergenic | 25.0% |
| !!! | ACTATCAATCAAGTTGAATT+AGG | - | chr1_2:44370844-44370863 | None:intergenic | 25.0% |
| !! | CTTGATTGATAGTACTTAAA+TGG | + | chr1_2:44370851-44370870 | Msa0071970:intron | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | + | chr1_2:44370937-44370956 | Msa0071970:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | + | chr1_2:44370976-44370995 | Msa0071970:intron | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | + | chr1_2:44371136-44371155 | Msa0071970:intron | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | + | chr1_2:44371217-44371236 | Msa0071970:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | - | chr1_2:44371573-44371592 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | - | chr1_2:44371769-44371788 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | - | chr1_2:44371817-44371836 | None:intergenic | 25.0% |
| ! | TTATAATGTTTACAGGTAGA+GGG | + | chr1_2:44371898-44371917 | Msa0071970:intron | 25.0% |
| !!! | CAAGGTTTACTTATTTTGTT+TGG | + | chr1_2:44371980-44371999 | Msa0071970:CDS | 25.0% |
| !!! | AGGTTTACTTATTTTGTTTG+GGG | + | chr1_2:44371982-44372001 | Msa0071970:CDS | 25.0% |
| ! | TTTAATATGCCATTAACACA+AGG | + | chr1_2:44372073-44372092 | Msa0071970:CDS | 25.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | - | chr1_2:44370110-44370129 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | - | chr1_2:44370236-44370255 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | + | chr1_2:44370316-44370335 | Msa0071970:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | - | chr1_2:44370356-44370375 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | + | chr1_2:44370378-44370397 | Msa0071970:intron | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | + | chr1_2:44370878-44370897 | Msa0071970:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | - | chr1_2:44370977-44370996 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | - | chr1_2:44371019-44371038 | None:intergenic | 30.0% |
| TTGGAACGATTATAATAGCA+TGG | - | chr1_2:44371079-44371098 | None:intergenic | 30.0% | |
| TAATCTTTACTGTAGCATCT+TGG | + | chr1_2:44371108-44371127 | Msa0071970:intron | 30.0% | |
| AAGTCTACCTTCCAATTAAT+TGG | + | chr1_2:44371506-44371525 | Msa0071970:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | + | chr1_2:44371507-44371526 | Msa0071970:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | - | chr1_2:44371516-44371535 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | + | chr1_2:44371529-44371548 | Msa0071970:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | - | chr1_2:44371567-44371586 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | + | chr1_2:44371711-44371730 | Msa0071970:intron | 30.0% | |
| TGTAAACATTATAACGTGCA+TGG | - | chr1_2:44371892-44371911 | None:intergenic | 30.0% | |
| ATGCACGTTATAATGTTTAC+AGG | + | chr1_2:44371891-44371910 | Msa0071970:intron | 30.0% | |
| GTTATAATGTTTACAGGTAG+AGG | + | chr1_2:44371897-44371916 | Msa0071970:intron | 30.0% | |
| !! | AGAAGGTTGATGATATTGAT+AGG | - | chr1_2:44372110-44372129 | None:intergenic | 30.0% |
| AGGTGAGAATTAGAATTAGA+AGG | - | chr1_2:44372127-44372146 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | - | chr1_2:44370110-44370129 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | - | chr1_2:44370236-44370255 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | + | chr1_2:44370316-44370335 | Msa0071970:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | - | chr1_2:44370356-44370375 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | + | chr1_2:44370378-44370397 | Msa0071970:intron | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | + | chr1_2:44370878-44370897 | Msa0071970:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | - | chr1_2:44370977-44370996 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | - | chr1_2:44371019-44371038 | None:intergenic | 30.0% |
| TTGGAACGATTATAATAGCA+TGG | - | chr1_2:44371079-44371098 | None:intergenic | 30.0% | |
| TAATCTTTACTGTAGCATCT+TGG | + | chr1_2:44371108-44371127 | Msa0071970:intron | 30.0% | |
| AAGTCTACCTTCCAATTAAT+TGG | + | chr1_2:44371506-44371525 | Msa0071970:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | + | chr1_2:44371507-44371526 | Msa0071970:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | - | chr1_2:44371516-44371535 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | + | chr1_2:44371529-44371548 | Msa0071970:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | - | chr1_2:44371567-44371586 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | + | chr1_2:44371711-44371730 | Msa0071970:intron | 30.0% | |
| TGTAAACATTATAACGTGCA+TGG | - | chr1_2:44371892-44371911 | None:intergenic | 30.0% | |
| ATGCACGTTATAATGTTTAC+AGG | + | chr1_2:44371891-44371910 | Msa0071970:intron | 30.0% | |
| GTTATAATGTTTACAGGTAG+AGG | + | chr1_2:44371897-44371916 | Msa0071970:intron | 30.0% | |
| !! | AGAAGGTTGATGATATTGAT+AGG | - | chr1_2:44372110-44372129 | None:intergenic | 30.0% |
| AGGTGAGAATTAGAATTAGA+AGG | - | chr1_2:44372127-44372146 | None:intergenic | 30.0% | |
| ATCTTTCAGAAACATCACTC+TGG | + | chr1_2:44369961-44369980 | Msa0071970:CDS | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | - | chr1_2:44370026-44370045 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | + | chr1_2:44370030-44370049 | Msa0071970:CDS | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | - | chr1_2:44370074-44370093 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | - | chr1_2:44370077-44370096 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | - | chr1_2:44370097-44370116 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | - | chr1_2:44370121-44370140 | None:intergenic | 35.0% |
| !! | TTTTCGTCTTCGGGTTTTTA+CGG | - | chr1_2:44370162-44370181 | None:intergenic | 35.0% |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | - | chr1_2:44370171-44370190 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | - | chr1_2:44370172-44370191 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | + | chr1_2:44370258-44370277 | Msa0071970:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | - | chr1_2:44370298-44370317 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | + | chr1_2:44370315-44370334 | Msa0071970:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | + | chr1_2:44370382-44370401 | Msa0071970:intron | 35.0% | |
| GGTAAGAATGAGGTTGTTAA+TGG | + | chr1_2:44370576-44370595 | Msa0071970:intron | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | + | chr1_2:44370582-44370601 | Msa0071970:intron | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | + | chr1_2:44370583-44370602 | Msa0071970:intron | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | - | chr1_2:44370669-44370688 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | - | chr1_2:44370674-44370693 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | - | chr1_2:44370973-44370992 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | + | chr1_2:44371015-44371034 | Msa0071970:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | - | chr1_2:44371520-44371539 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | + | chr1_2:44371517-44371536 | Msa0071970:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | + | chr1_2:44371528-44371547 | Msa0071970:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | + | chr1_2:44371714-44371733 | Msa0071970:intron | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | - | chr1_2:44371757-44371776 | None:intergenic | 35.0% | |
| !! | TCAAGTCAACTTCTAGTTCA+AGG | + | chr1_2:44371962-44371981 | Msa0071970:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | - | chr1_2:44372020-44372039 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | - | chr1_2:44372085-44372104 | None:intergenic | 35.0% |
| ATCTTTCAGAAACATCACTC+TGG | + | chr1_2:44369961-44369980 | Msa0071970:CDS | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | - | chr1_2:44370026-44370045 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | + | chr1_2:44370030-44370049 | Msa0071970:CDS | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | - | chr1_2:44370074-44370093 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | - | chr1_2:44370077-44370096 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | - | chr1_2:44370097-44370116 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | - | chr1_2:44370121-44370140 | None:intergenic | 35.0% |
| !! | TTTTCGTCTTCGGGTTTTTA+CGG | - | chr1_2:44370162-44370181 | None:intergenic | 35.0% |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | - | chr1_2:44370171-44370190 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | - | chr1_2:44370172-44370191 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | + | chr1_2:44370258-44370277 | Msa0071970:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | - | chr1_2:44370298-44370317 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | + | chr1_2:44370315-44370334 | Msa0071970:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | + | chr1_2:44370382-44370401 | Msa0071970:intron | 35.0% | |
| GGTAAGAATGAGGTTGTTAA+TGG | + | chr1_2:44370576-44370595 | Msa0071970:intron | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | + | chr1_2:44370582-44370601 | Msa0071970:intron | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | + | chr1_2:44370583-44370602 | Msa0071970:intron | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | - | chr1_2:44370669-44370688 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | - | chr1_2:44370674-44370693 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | - | chr1_2:44370973-44370992 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | + | chr1_2:44371015-44371034 | Msa0071970:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | - | chr1_2:44371520-44371539 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | + | chr1_2:44371517-44371536 | Msa0071970:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | + | chr1_2:44371528-44371547 | Msa0071970:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | + | chr1_2:44371714-44371733 | Msa0071970:intron | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | - | chr1_2:44371757-44371776 | None:intergenic | 35.0% | |
| !! | TCAAGTCAACTTCTAGTTCA+AGG | + | chr1_2:44371962-44371981 | Msa0071970:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | - | chr1_2:44372020-44372039 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | - | chr1_2:44372085-44372104 | None:intergenic | 35.0% |
| TTTCAGAAACATCACTCTGG+TGG | + | chr1_2:44369964-44369983 | Msa0071970:CDS | 40.0% | |
| GTAAAAACCCGAAGACGAAA+AGG | + | chr1_2:44370161-44370180 | Msa0071970:CDS | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | - | chr1_2:44370213-44370232 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | + | chr1_2:44370261-44370280 | Msa0071970:CDS | 40.0% | |
| ! | GTCAGAGGCTTTTTATCAAC+TGG | + | chr1_2:44370475-44370494 | Msa0071970:CDS | 40.0% |
| ! | AGAGGCTTTTTATCAACTGG+AGG | + | chr1_2:44370478-44370497 | Msa0071970:CDS | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | + | chr1_2:44370484-44370503 | Msa0071970:CDS | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | + | chr1_2:44370550-44370569 | Msa0071970:CDS | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | + | chr1_2:44370566-44370585 | Msa0071970:CDS | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | + | chr1_2:44370675-44370694 | Msa0071970:CDS | 40.0% | |
| ! | GGTGTTGAAGAATCATGTTC+AGG | - | chr1_2:44372024-44372043 | None:intergenic | 40.0% |
| TTTCAGAAACATCACTCTGG+TGG | + | chr1_2:44369964-44369983 | Msa0071970:CDS | 40.0% | |
| GTAAAAACCCGAAGACGAAA+AGG | + | chr1_2:44370161-44370180 | Msa0071970:CDS | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | - | chr1_2:44370213-44370232 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | + | chr1_2:44370261-44370280 | Msa0071970:CDS | 40.0% | |
| ! | GTCAGAGGCTTTTTATCAAC+TGG | + | chr1_2:44370475-44370494 | Msa0071970:CDS | 40.0% |
| ! | AGAGGCTTTTTATCAACTGG+AGG | + | chr1_2:44370478-44370497 | Msa0071970:CDS | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | + | chr1_2:44370484-44370503 | Msa0071970:CDS | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | + | chr1_2:44370550-44370569 | Msa0071970:CDS | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | + | chr1_2:44370566-44370585 | Msa0071970:CDS | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | + | chr1_2:44370675-44370694 | Msa0071970:CDS | 40.0% | |
| ! | GGTGTTGAAGAATCATGTTC+AGG | - | chr1_2:44372024-44372043 | None:intergenic | 40.0% |
| TGATGGAGAGACCAAGAAGT+TGG | - | chr1_2:44370044-44370063 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | - | chr1_2:44370067-44370086 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | - | chr1_2:44370070-44370089 | None:intergenic | 45.0% | |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | - | chr1_2:44370204-44370223 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | - | chr1_2:44370205-44370224 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | - | chr1_2:44370295-44370314 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | + | chr1_2:44370325-44370344 | Msa0071970:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | + | chr1_2:44370346-44370365 | Msa0071970:CDS | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | + | chr1_2:44370417-44370436 | Msa0071970:CDS | 45.0% | |
| !! | GACATCGTGTTGATAGTCAG+AGG | + | chr1_2:44370460-44370479 | Msa0071970:CDS | 45.0% |
| ! | GGCTTTTTATCAACTGGAGG+AGG | + | chr1_2:44370481-44370500 | Msa0071970:CDS | 45.0% |
| CATCATGGTAAGGGTAGTGA+TGG | + | chr1_2:44370549-44370568 | Msa0071970:CDS | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | + | chr1_2:44370586-44370605 | Msa0071970:intron | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | - | chr1_2:44370639-44370658 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | - | chr1_2:44370645-44370664 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | - | chr1_2:44371925-44371944 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | - | chr1_2:44371926-44371945 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | + | chr1_2:44371929-44371948 | Msa0071970:CDS | 45.0% | |
| ! | TTGACTTGAACTCTTCCCAC+CGG | - | chr1_2:44371951-44371970 | None:intergenic | 45.0% |
| TGATGGAGAGACCAAGAAGT+TGG | - | chr1_2:44370044-44370063 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | - | chr1_2:44370067-44370086 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | - | chr1_2:44370070-44370089 | None:intergenic | 45.0% | |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | - | chr1_2:44370204-44370223 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | - | chr1_2:44370205-44370224 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | - | chr1_2:44370295-44370314 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | + | chr1_2:44370325-44370344 | Msa0071970:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | + | chr1_2:44370346-44370365 | Msa0071970:CDS | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | + | chr1_2:44370417-44370436 | Msa0071970:CDS | 45.0% | |
| !! | GACATCGTGTTGATAGTCAG+AGG | + | chr1_2:44370460-44370479 | Msa0071970:CDS | 45.0% |
| ! | GGCTTTTTATCAACTGGAGG+AGG | + | chr1_2:44370481-44370500 | Msa0071970:CDS | 45.0% |
| CATCATGGTAAGGGTAGTGA+TGG | + | chr1_2:44370549-44370568 | Msa0071970:CDS | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | + | chr1_2:44370586-44370605 | Msa0071970:intron | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | - | chr1_2:44370639-44370658 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | - | chr1_2:44370645-44370664 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | - | chr1_2:44371925-44371944 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | - | chr1_2:44371926-44371945 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | + | chr1_2:44371929-44371948 | Msa0071970:CDS | 45.0% | |
| ! | TTGACTTGAACTCTTCCCAC+CGG | - | chr1_2:44371951-44371970 | None:intergenic | 45.0% |
| !! | TCTTCGGGTTTTTACGGTGG+TGG | - | chr1_2:44370156-44370175 | None:intergenic | 50.0% |
| !! | TCGTCTTCGGGTTTTTACGG+TGG | - | chr1_2:44370159-44370178 | None:intergenic | 50.0% |
| CCCTTAACACCTTCTGACGT+AGG | + | chr1_2:44370201-44370220 | Msa0071970:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | + | chr1_2:44370520-44370539 | Msa0071970:CDS | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | + | chr1_2:44370555-44370574 | Msa0071970:CDS | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | - | chr1_2:44370613-44370632 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | + | chr1_2:44371717-44371736 | Msa0071970:intron | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | + | chr1_2:44371919-44371938 | Msa0071970:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | + | chr1_2:44371933-44371952 | Msa0071970:CDS | 50.0% | |
| !! | TCTTCGGGTTTTTACGGTGG+TGG | - | chr1_2:44370156-44370175 | None:intergenic | 50.0% |
| !! | TCGTCTTCGGGTTTTTACGG+TGG | - | chr1_2:44370159-44370178 | None:intergenic | 50.0% |
| CCCTTAACACCTTCTGACGT+AGG | + | chr1_2:44370201-44370220 | Msa0071970:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | + | chr1_2:44370520-44370539 | Msa0071970:CDS | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | + | chr1_2:44370555-44370574 | Msa0071970:CDS | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | - | chr1_2:44370613-44370632 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | + | chr1_2:44371717-44371736 | Msa0071970:intron | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | + | chr1_2:44371919-44371938 | Msa0071970:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | + | chr1_2:44371933-44371952 | Msa0071970:CDS | 50.0% | |
| TCCATCACCACCAACCTCCA+TGG | + | chr1_2:44370057-44370076 | Msa0071970:CDS | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | - | chr1_2:44370061-44370080 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | + | chr1_2:44370489-44370508 | Msa0071970:CDS | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | + | chr1_2:44370490-44370509 | Msa0071970:CDS | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | + | chr1_2:44370503-44370522 | Msa0071970:CDS | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | + | chr1_2:44370519-44370538 | Msa0071970:CDS | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | + | chr1_2:44370521-44370540 | Msa0071970:CDS | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | + | chr1_2:44370525-44370544 | Msa0071970:CDS | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | + | chr1_2:44370539-44370558 | Msa0071970:CDS | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | + | chr1_2:44370540-44370559 | Msa0071970:CDS | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | + | chr1_2:44370594-44370613 | Msa0071970:intron | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | + | chr1_2:44370595-44370614 | Msa0071970:intron | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | + | chr1_2:44371932-44371951 | Msa0071970:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | - | chr1_2:44371938-44371957 | None:intergenic | 55.0% |
| TCCATCACCACCAACCTCCA+TGG | + | chr1_2:44370057-44370076 | Msa0071970:CDS | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | - | chr1_2:44370061-44370080 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | + | chr1_2:44370489-44370508 | Msa0071970:CDS | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | + | chr1_2:44370490-44370509 | Msa0071970:CDS | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | + | chr1_2:44370503-44370522 | Msa0071970:CDS | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | + | chr1_2:44370519-44370538 | Msa0071970:CDS | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | + | chr1_2:44370521-44370540 | Msa0071970:CDS | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | + | chr1_2:44370525-44370544 | Msa0071970:CDS | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | + | chr1_2:44370539-44370558 | Msa0071970:CDS | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | + | chr1_2:44370540-44370559 | Msa0071970:CDS | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | + | chr1_2:44370594-44370613 | Msa0071970:intron | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | + | chr1_2:44370595-44370614 | Msa0071970:intron | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | + | chr1_2:44371932-44371951 | Msa0071970:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | - | chr1_2:44371938-44371957 | None:intergenic | 55.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | + | chr1_2:44370491-44370510 | Msa0071970:CDS | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | + | chr1_2:44370524-44370543 | Msa0071970:CDS | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | + | chr1_2:44370534-44370553 | Msa0071970:CDS | 60.0% | |
| CAACTGGAGGAGGAGGAGTG+GGG | + | chr1_2:44370491-44370510 | Msa0071970:CDS | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | + | chr1_2:44370524-44370543 | Msa0071970:CDS | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | + | chr1_2:44370534-44370553 | Msa0071970:CDS | 60.0% | |
| GCAGACTCCGCCGAGTGCAA+AGG | + | chr1_2:44370285-44370304 | Msa0071970:CDS | 65.0% | |
| GCAGACTCCGCCGAGTGCAA+AGG | + | chr1_2:44370285-44370304 | Msa0071970:CDS | 65.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | - | chr1_2:44370276-44370295 | None:intergenic | 75.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | - | chr1_2:44370276-44370295 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 44369957 | 44372150 | 44369957 | ID=Msa0071970;Name=Msa0071970 |
| chr1_2 | mRNA | 44369957 | 44372150 | 44369957 | ID=Msa0071970-mRNA-1;Parent=Msa0071970;Name=Msa0071970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.25|0.2|5|0|308 |
| chr1_2 | exon | 44369957 | 44370190 | 44369957 | ID=Msa0071970-mRNA-1:exon:13359;Parent=Msa0071970-mRNA-1 |
| chr1_2 | exon | 44370198 | 44370372 | 44370198 | ID=Msa0071970-mRNA-1:exon:13360;Parent=Msa0071970-mRNA-1 |
| chr1_2 | exon | 44370400 | 44370587 | 44370400 | ID=Msa0071970-mRNA-1:exon:13361;Parent=Msa0071970-mRNA-1 |
| chr1_2 | exon | 44370604 | 44370696 | 44370604 | ID=Msa0071970-mRNA-1:exon:13362;Parent=Msa0071970-mRNA-1 |
| chr1_2 | exon | 44371917 | 44372150 | 44371917 | ID=Msa0071970-mRNA-1:exon:13363;Parent=Msa0071970-mRNA-1 |
| chr1_2 | CDS | 44369957 | 44370190 | 44369957 | ID=Msa0071970-mRNA-1:cds;Parent=Msa0071970-mRNA-1 |
| chr1_2 | CDS | 44370198 | 44370372 | 44370198 | ID=Msa0071970-mRNA-1:cds;Parent=Msa0071970-mRNA-1 |
| chr1_2 | CDS | 44370400 | 44370587 | 44370400 | ID=Msa0071970-mRNA-1:cds;Parent=Msa0071970-mRNA-1 |
| chr1_2 | CDS | 44370604 | 44370696 | 44370604 | ID=Msa0071970-mRNA-1:cds;Parent=Msa0071970-mRNA-1 |
| chr1_2 | CDS | 44371917 | 44372150 | 44371917 | ID=Msa0071970-mRNA-1:cds;Parent=Msa0071970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
