Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119930 | XP_024634118.1 | 97.885 | 331 | 6 | 1 | 1 | 331 | 1 | 330 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119930 | sp|Q9FNI3|Y5625_ARATH | 52.727 | 220 | 77 | 4 | 69 | 280 | 39 | 239 | 3.88e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119930 | A0A396JQN5 | 97.885 | 331 | 6 | 1 | 1 | 331 | 1 | 330 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0119930 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024260 | Msa0119930 | 0.938803 | 3.673731e-99 | -8.615850e-47 |
| Msa0071970 | Msa0119930 | 0.820700 | 5.973049e-53 | -8.615850e-47 |
| Msa0119930 | Msa0163320 | 0.940311 | 2.899348e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119930 | MtrunA17_Chr1g0178071 | 97.885 | 331 | 6 | 1 | 1 | 331 | 1 | 330 | 0.0 | 678 |
| Msa0119930 | MtrunA17_Chr7g0266821 | 60.837 | 263 | 67 | 10 | 79 | 329 | 64 | 302 | 1.36e-89 | 270 |
| Msa0119930 | MtrunA17_Chr8g0345771 | 70.796 | 113 | 29 | 2 | 71 | 181 | 167 | 277 | 3.72e-48 | 169 |
| Msa0119930 | MtrunA17_Chr7g0276471 | 69.725 | 109 | 29 | 2 | 75 | 181 | 117 | 223 | 5.10e-45 | 159 |
| Msa0119930 | MtrunA17_Chr5g0422501 | 66.087 | 115 | 33 | 1 | 72 | 180 | 232 | 346 | 1.53e-44 | 157 |
| Msa0119930 | MtrunA17_Chr1g0198661 | 61.157 | 121 | 36 | 2 | 72 | 181 | 188 | 308 | 1.67e-40 | 145 |
| Msa0119930 | MtrunA17_Chr1g0213701 | 50.467 | 107 | 43 | 2 | 64 | 165 | 145 | 246 | 1.52e-28 | 112 |
| Msa0119930 | MtrunA17_Chr5g0432721 | 36.296 | 135 | 65 | 6 | 54 | 181 | 302 | 422 | 3.29e-15 | 76.6 |
| Msa0119930 | MtrunA17_Chr4g0012861 | 35.338 | 133 | 66 | 6 | 54 | 179 | 295 | 414 | 4.39e-15 | 76.3 |
| Msa0119930 | MtrunA17_Chr3g0107701 | 35.758 | 165 | 81 | 9 | 54 | 207 | 319 | 469 | 2.08e-14 | 74.3 |
| Msa0119930 | MtrunA17_Chr2g0281191 | 36.667 | 120 | 62 | 5 | 62 | 179 | 345 | 452 | 2.93e-14 | 73.9 |
| Msa0119930 | MtrunA17_Chr7g0244871 | 41.758 | 91 | 46 | 3 | 75 | 163 | 12 | 97 | 1.38e-13 | 66.2 |
| Msa0119930 | MtrunA17_Chr8g0389081 | 38.053 | 113 | 64 | 3 | 67 | 179 | 130 | 236 | 1.31e-12 | 68.9 |
| Msa0119930 | MtrunA17_Chr3g0115271 | 35.897 | 117 | 69 | 4 | 65 | 179 | 105 | 217 | 8.07e-12 | 66.2 |
| Msa0119930 | MtrunA17_Chr1g0199681 | 31.293 | 147 | 81 | 4 | 71 | 216 | 188 | 315 | 1.06e-11 | 65.9 |
| Msa0119930 | MtrunA17_Chr2g0326761 | 36.697 | 109 | 66 | 2 | 71 | 179 | 103 | 208 | 1.58e-11 | 65.5 |
| Msa0119930 | MtrunA17_Chr4g0028971 | 32.432 | 148 | 83 | 4 | 71 | 213 | 104 | 239 | 1.93e-11 | 65.1 |
| Msa0119930 | MtrunA17_Chr4g0029671 | 30.178 | 169 | 112 | 3 | 68 | 236 | 158 | 320 | 3.21e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119930 | AT5G06250.5 | 51.786 | 224 | 81 | 4 | 69 | 284 | 39 | 243 | 2.83e-64 | 204 |
| Msa0119930 | AT5G06250.2 | 52.727 | 220 | 77 | 4 | 69 | 280 | 39 | 239 | 3.94e-64 | 204 |
| Msa0119930 | AT5G06250.4 | 52.727 | 220 | 77 | 4 | 69 | 280 | 39 | 239 | 4.66e-64 | 204 |
| Msa0119930 | AT3G11580.1 | 52.968 | 219 | 73 | 7 | 71 | 279 | 24 | 222 | 1.23e-61 | 197 |
| Msa0119930 | AT3G11580.3 | 52.968 | 219 | 73 | 7 | 71 | 279 | 24 | 222 | 1.20e-60 | 198 |
| Msa0119930 | AT5G06250.1 | 51.802 | 222 | 65 | 5 | 69 | 282 | 39 | 226 | 2.54e-60 | 194 |
| Msa0119930 | AT5G06250.3 | 51.339 | 224 | 67 | 5 | 69 | 284 | 39 | 228 | 3.38e-60 | 194 |
| Msa0119930 | AT2G36080.1 | 49.780 | 227 | 63 | 3 | 70 | 295 | 32 | 208 | 1.72e-58 | 189 |
| Msa0119930 | AT2G36080.3 | 49.561 | 228 | 64 | 3 | 70 | 296 | 32 | 209 | 2.00e-58 | 188 |
| Msa0119930 | AT3G11580.4 | 76.471 | 119 | 19 | 2 | 71 | 180 | 24 | 142 | 9.01e-58 | 186 |
| Msa0119930 | AT3G11580.2 | 76.471 | 119 | 19 | 2 | 71 | 180 | 24 | 142 | 9.01e-58 | 186 |
| Msa0119930 | AT3G11580.5 | 76.471 | 119 | 19 | 2 | 71 | 180 | 24 | 142 | 9.01e-58 | 186 |
| Msa0119930 | AT2G36080.4 | 78.571 | 112 | 23 | 1 | 70 | 180 | 32 | 143 | 1.61e-55 | 179 |
| Msa0119930 | AT2G36080.2 | 78.571 | 112 | 23 | 1 | 70 | 180 | 32 | 143 | 1.61e-55 | 179 |
| Msa0119930 | AT3G61970.1 | 43.805 | 226 | 91 | 6 | 71 | 279 | 18 | 224 | 5.62e-50 | 169 |
| Msa0119930 | AT2G46870.1 | 69.912 | 113 | 29 | 2 | 71 | 180 | 30 | 140 | 2.19e-47 | 162 |
| Msa0119930 | AT1G01030.2 | 43.882 | 237 | 100 | 11 | 65 | 279 | 45 | 270 | 2.41e-47 | 163 |
| Msa0119930 | AT1G68840.2 | 63.934 | 122 | 44 | 0 | 61 | 182 | 173 | 294 | 4.99e-46 | 160 |
| Msa0119930 | AT1G68840.1 | 63.934 | 122 | 44 | 0 | 61 | 182 | 173 | 294 | 4.99e-46 | 160 |
| Msa0119930 | AT1G13260.1 | 66.087 | 115 | 38 | 1 | 73 | 187 | 185 | 298 | 5.11e-46 | 159 |
| Msa0119930 | AT3G25730.1 | 62.097 | 124 | 45 | 2 | 73 | 194 | 180 | 303 | 4.39e-45 | 157 |
| Msa0119930 | AT1G01030.1 | 62.185 | 119 | 40 | 2 | 65 | 180 | 45 | 161 | 5.18e-44 | 155 |
| Msa0119930 | AT1G25560.1 | 59.375 | 128 | 46 | 1 | 72 | 193 | 191 | 318 | 2.06e-43 | 153 |
| Msa0119930 | AT4G01500.1 | 56.198 | 121 | 40 | 2 | 70 | 181 | 30 | 146 | 2.91e-37 | 136 |
| Msa0119930 | AT1G50680.1 | 50.000 | 98 | 40 | 1 | 75 | 163 | 156 | 253 | 1.98e-25 | 104 |
| Msa0119930 | AT1G51120.1 | 49.474 | 95 | 42 | 1 | 75 | 163 | 177 | 271 | 7.89e-25 | 103 |
| Msa0119930 | AT2G30470.1 | 35.766 | 137 | 76 | 5 | 75 | 206 | 294 | 423 | 2.96e-15 | 77.0 |
| Msa0119930 | AT4G32010.1 | 31.944 | 144 | 89 | 5 | 75 | 216 | 285 | 421 | 4.25e-14 | 73.6 |
| Msa0119930 | AT4G32010.2 | 31.944 | 144 | 89 | 5 | 75 | 216 | 281 | 417 | 4.73e-14 | 73.6 |
| Msa0119930 | AT1G77850.2 | 36.283 | 113 | 65 | 3 | 69 | 179 | 112 | 219 | 2.51e-12 | 68.2 |
| Msa0119930 | AT1G77850.1 | 36.283 | 113 | 65 | 3 | 69 | 179 | 112 | 219 | 2.53e-12 | 68.2 |
| Msa0119930 | AT1G35240.1 | 33.793 | 145 | 87 | 4 | 60 | 197 | 105 | 247 | 1.42e-11 | 65.9 |
| Msa0119930 | AT1G35520.1 | 33.103 | 145 | 88 | 4 | 60 | 197 | 105 | 247 | 2.16e-11 | 65.1 |
| Msa0119930 | AT1G34310.1 | 32.414 | 145 | 89 | 4 | 60 | 197 | 105 | 247 | 3.24e-11 | 64.7 |
| Msa0119930 | AT5G60450.2 | 31.288 | 163 | 103 | 4 | 75 | 236 | 152 | 306 | 8.21e-11 | 63.5 |
Find 88 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGTACTTAGGTTGTTT+GGG | 0.235789 | 1_3:+44451384 | Msa0119930:CDS |
| TCAAGGGTACTTAGGTTGTT+TGG | 0.238957 | 1_3:+44451383 | Msa0119930:CDS |
| TTCCCACCGGTTTCGTCCTT+TGG | 0.253544 | 1_3:-44451337 | None:intergenic |
| CGTCCTTTGGTTCTGACTTT+GGG | 0.260868 | 1_3:-44451324 | None:intergenic |
| TCTAGAGTACCTTGTGTTAA+TGG | 0.288145 | 1_3:-44451482 | None:intergenic |
| TATTAGTCGAACCAACTTCT+TGG | 0.319356 | 1_3:+44449442 | Msa0119930:CDS |
| GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1_3:+44449760 | Msa0119930:CDS |
| TCGTCCTTTGGTTCTGACTT+TGG | 0.367217 | 1_3:-44451325 | None:intergenic |
| ACATATATCTAGTAGTAATA+TGG | 0.372904 | 1_3:-44451566 | None:intergenic |
| CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1_3:-44449615 | None:intergenic |
| GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1_3:+44449990 | Msa0119930:CDS |
| CTTCTAGTTCAAGGGTACTT+AGG | 0.380189 | 1_3:+44451375 | Msa0119930:CDS |
| CAAGTTCAACTTCTAGTTCA+AGG | 0.381802 | 1_3:+44451366 | Msa0119930:CDS |
| GGGTGAGAATTAGAATTAGA+AGG | 0.383626 | 1_3:-44451524 | None:intergenic |
| TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1_3:-44449616 | None:intergenic |
| AGAAGGTTGATGATATTGAT+AGG | 0.411150 | 1_3:-44451507 | None:intergenic |
| CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1_3:+44449792 | Msa0119930:CDS |
| TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1_3:-44450050 | None:intergenic |
| GGTGTTGAAGAATCATGTTC+AGG | 0.437272 | 1_3:-44451425 | None:intergenic |
| ACCATGGAGGTTGGTGGTGA+TGG | 0.455308 | 1_3:-44449470 | None:intergenic |
| AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1_3:+44449575 | Msa0119930:CDS |
| TATGTACCATCCTTGAGGTT+GGG | 0.466712 | 1_3:+44451584 | Msa0119930:three_prime_UTR |
| TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1_3:+44449904 | Msa0119930:CDS |
| AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1_3:+44449831 | Msa0119930:CDS |
| AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1_3:+44449996 | Msa0119930:CDS |
| TCAGAACCAAAGGACGAAAC+CGG | 0.504470 | 1_3:+44451331 | Msa0119930:CDS |
| ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1_3:+44449903 | Msa0119930:CDS |
| AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1_3:+44449948 | Msa0119930:CDS |
| GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1_3:+44449917 | Msa0119930:CDS |
| CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1_3:+44449963 | Msa0119930:CDS |
| GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1_3:+44449796 | Msa0119930:CDS |
| ATATGTACCATCCTTGAGGT+TGG | 0.536417 | 1_3:+44451583 | Msa0119930:three_prime_UTR |
| AAGTTCAACTTCTAGTTCAA+GGG | 0.539417 | 1_3:+44451367 | Msa0119930:CDS |
| AAGGGTACTTAGGTTGTTTG+GGG | 0.543731 | 1_3:+44451385 | Msa0119930:CDS |
| TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1_3:-44449709 | None:intergenic |
| ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1_3:+44450009 | Msa0119930:CDS |
| AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1_3:+44449739 | Msa0119930:CDS |
| GAACTTGAACTCTTTCCCAC+CGG | 0.558795 | 1_3:-44451350 | None:intergenic |
| AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1_3:+44449953 | Msa0119930:CDS |
| AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1_3:+44450008 | Msa0119930:CDS |
| GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1_3:-44449687 | None:intergenic |
| ATGGAGGTTGGTGGTGATGG+AGG | 0.568252 | 1_3:-44449467 | None:intergenic |
| CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1_3:+44450089 | Msa0119930:CDS |
| GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1_3:+44449699 | Msa0119930:CDS |
| TGGAGGTTGGTGGTGATGGA+GGG | 0.578038 | 1_3:-44449466 | None:intergenic |
| TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1_3:-44449767 | None:intergenic |
| TTGAAGAATCATGTTCAGGT+TGG | 0.578477 | 1_3:-44451421 | None:intergenic |
| TAGGTTGTTTGGGGTCAACA+TGG | 0.578736 | 1_3:+44451394 | Msa0119930:CDS |
| TGATGGAGGGACCAAGAAGT+TGG | 0.579137 | 1_3:-44449453 | None:intergenic |
| TCCATCACCACCAACCTCCA+TGG | 0.579187 | 1_3:+44449469 | Msa0119930:CDS |
| ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1_3:-44450024 | None:intergenic |
| GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1_3:+44449938 | Msa0119930:CDS |
| GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1_3:+44449939 | Msa0119930:CDS |
| AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1_3:-44450080 | None:intergenic |
| TTTCAGAAACATCACTCTGG+TGG | 0.596606 | 1_3:+44449388 | Msa0119930:CDS |
| ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1_3:+44449997 | Msa0119930:CDS |
| GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1_3:-44449479 | None:intergenic |
| AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1_3:-44450056 | None:intergenic |
| GTTATAATGTTACAGGTAGA+GGG | 0.600635 | 1_3:+44451300 | Msa0119930:intron |
| TAACTTAGAACCCAACCTCA+AGG | 0.602951 | 1_3:-44451594 | None:intergenic |
| TTACTATCATAAGAACATTG+AGG | 0.605601 | 1_3:-44451446 | None:intergenic |
| TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1_3:-44449486 | None:intergenic |
| TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1_3:+44449980 | Msa0119930:CDS |
| CATGAAGACATTGATCATGT+TGG | 0.609605 | 1_3:-44450085 | None:intergenic |
| ATCTTTCAGAAACATCACTC+TGG | 0.613066 | 1_3:+44449385 | Msa0119930:CDS |
| GGTCCCAAAGTCAGAACCAA+AGG | 0.613585 | 1_3:+44451321 | Msa0119930:CDS |
| ATATCTAGTAGTAATATGGT+TGG | 0.616517 | 1_3:-44451562 | None:intergenic |
| TTAGAACCCAACCTCAAGGA+TGG | 0.619157 | 1_3:-44451590 | None:intergenic |
| AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1_3:+44449934 | Msa0119930:CDS |
| GAACCAAAGGACGAAACCGG+TGG | 0.630994 | 1_3:+44451334 | Msa0119930:CDS |
| CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1_3:+44449933 | Msa0119930:CDS |
| GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1_3:+44449954 | Msa0119930:CDS |
| ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1_3:+44449964 | Msa0119930:CDS |
| CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1_3:+44449615 | Msa0119930:CDS |
| GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1_3:+44449969 | Msa0119930:CDS |
| AACCAAAGGACGAAACCGGT+GGG | 0.646214 | 1_3:+44451335 | Msa0119930:CDS |
| TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1_3:-44449706 | None:intergenic |
| AGATATATGTACCATCCTTG+AGG | 0.651399 | 1_3:+44451579 | Msa0119930:exon |
| CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1_3:+44449905 | Msa0119930:CDS |
| GGTTGGTGACGTACCACGTG+AGG | 0.657771 | 1_3:-44451545 | None:intergenic |
| AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1_3:-44449476 | None:intergenic |
| TTCTAATTCTCACCCTCACG+TGG | 0.665652 | 1_3:+44451532 | Msa0119930:CDS |
| GTTGGTGACGTACCACGTGA+GGG | 0.676010 | 1_3:-44451544 | None:intergenic |
| GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1_3:-44449435 | None:intergenic |
| AATAATATGCCATTAACACA+AGG | 0.689101 | 1_3:+44451473 | Msa0119930:CDS |
| ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1_3:-44449483 | None:intergenic |
| AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1_3:+44450000 | Msa0119930:CDS |
| GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1_3:+44449935 | Msa0119930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATATATTTATA+TGG | - | chr1_3:44450226-44450245 | None:intergenic | 0.0% |
| !! | ATTATAATTATATATTTATA+TGG | - | chr1_3:44450226-44450245 | None:intergenic | 0.0% |
| !! | AAAGAAAAAAAGAAAAAAAA+AGG | - | chr1_3:44450685-44450704 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | + | chr1_3:44451098-44451117 | Msa0119930:intron | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | + | chr1_3:44451254-44451273 | Msa0119930:intron | 10.0% |
| !!! | TGTCTTTTTTTAATTATATT+AGG | + | chr1_3:44451621-44451640 | Msa0119930:three_prime_UTR | 10.0% |
| !! | AAAGAAAAAAAGAAAAAAAA+AGG | - | chr1_3:44450685-44450704 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | + | chr1_3:44451098-44451117 | Msa0119930:intron | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | + | chr1_3:44451254-44451273 | Msa0119930:intron | 10.0% |
| !!! | TGTCTTTTTTTAATTATATT+AGG | + | chr1_3:44451621-44451640 | Msa0119930:three_prime_UTR | 10.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | - | chr1_3:44450199-44450218 | None:intergenic | 15.0% |
| !! | AATTTGACAATTAATCTTTA+CGG | + | chr1_3:44450511-44450530 | Msa0119930:intron | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | + | chr1_3:44450768-44450787 | Msa0119930:intron | 15.0% |
| !!! | ATCTTCTTTGTTTTTTTTTT+TGG | - | chr1_3:44450857-44450876 | None:intergenic | 15.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | - | chr1_3:44450199-44450218 | None:intergenic | 15.0% |
| !! | AATTTGACAATTAATCTTTA+CGG | + | chr1_3:44450511-44450530 | Msa0119930:intron | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | + | chr1_3:44450768-44450787 | Msa0119930:intron | 15.0% |
| !!! | ATCTTCTTTGTTTTTTTTTT+TGG | - | chr1_3:44450857-44450876 | None:intergenic | 15.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | - | chr1_3:44450200-44450219 | None:intergenic | 20.0% |
| !! | TATCAATCAAAGTTGAATTA+GGG | - | chr1_3:44450257-44450276 | None:intergenic | 20.0% |
| !!! | TTTGATTGATAGTACTTAAA+TGG | + | chr1_3:44450266-44450285 | Msa0119930:intron | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | + | chr1_3:44450267-44450286 | Msa0119930:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | - | chr1_3:44450512-44450531 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+GGG | - | chr1_3:44450629-44450648 | None:intergenic | 20.0% |
| !! | ACTCATAAAATGAAAGAAAA+AGG | - | chr1_3:44450630-44450649 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | - | chr1_3:44450759-44450778 | None:intergenic | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | + | chr1_3:44451192-44451211 | Msa0119930:intron | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | - | chr1_3:44451219-44451238 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | - | chr1_3:44451220-44451239 | None:intergenic | 20.0% |
| !! | ACATATATCTAGTAGTAATA+TGG | - | chr1_3:44451569-44451588 | None:intergenic | 20.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | - | chr1_3:44450200-44450219 | None:intergenic | 20.0% |
| !! | TATCAATCAAAGTTGAATTA+GGG | - | chr1_3:44450257-44450276 | None:intergenic | 20.0% |
| !!! | TTTGATTGATAGTACTTAAA+TGG | + | chr1_3:44450266-44450285 | Msa0119930:intron | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | + | chr1_3:44450267-44450286 | Msa0119930:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | - | chr1_3:44450512-44450531 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+GGG | - | chr1_3:44450629-44450648 | None:intergenic | 20.0% |
| !! | ACTCATAAAATGAAAGAAAA+AGG | - | chr1_3:44450630-44450649 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | - | chr1_3:44450759-44450778 | None:intergenic | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | + | chr1_3:44451192-44451211 | Msa0119930:intron | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | - | chr1_3:44451219-44451238 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | - | chr1_3:44451220-44451239 | None:intergenic | 20.0% |
| !! | ACATATATCTAGTAGTAATA+TGG | - | chr1_3:44451569-44451588 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | - | chr1_3:44449662-44449681 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | - | chr1_3:44449663-44449682 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | - | chr1_3:44450195-44450214 | None:intergenic | 25.0% |
| ! | CTATCAATCAAAGTTGAATT+AGG | - | chr1_3:44450258-44450277 | None:intergenic | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | + | chr1_3:44450352-44450371 | Msa0119930:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | + | chr1_3:44450391-44450410 | Msa0119930:intron | 25.0% |
| ! | AGATTAATTGTCAAATTGGA+CGG | - | chr1_3:44450508-44450527 | None:intergenic | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | + | chr1_3:44450550-44450569 | Msa0119930:intron | 25.0% |
| !!! | AAGGGAAAAATATGGTTTTA+GGG | - | chr1_3:44450611-44450630 | None:intergenic | 25.0% |
| !! | AAAGGGAAAAATATGGTTTT+AGG | - | chr1_3:44450612-44450631 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAGGGAAAAATA+TGG | - | chr1_3:44450619-44450638 | None:intergenic | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | + | chr1_3:44450631-44450650 | Msa0119930:intron | 25.0% |
| ! | ATGAAACAACTATATTCTCA+TGG | + | chr1_3:44450875-44450894 | Msa0119930:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | - | chr1_3:44450974-44450993 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | - | chr1_3:44451170-44451189 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | - | chr1_3:44451218-44451237 | None:intergenic | 25.0% |
| ! | TTACTATCATAAGAACATTG+AGG | - | chr1_3:44451449-44451468 | None:intergenic | 25.0% |
| ! | AATAATATGCCATTAACACA+AGG | + | chr1_3:44451473-44451492 | Msa0119930:CDS | 25.0% |
| ! | ATATCTAGTAGTAATATGGT+TGG | - | chr1_3:44451565-44451584 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | - | chr1_3:44449662-44449681 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | - | chr1_3:44449663-44449682 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | - | chr1_3:44450195-44450214 | None:intergenic | 25.0% |
| ! | CTATCAATCAAAGTTGAATT+AGG | - | chr1_3:44450258-44450277 | None:intergenic | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | + | chr1_3:44450352-44450371 | Msa0119930:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | + | chr1_3:44450391-44450410 | Msa0119930:intron | 25.0% |
| ! | AGATTAATTGTCAAATTGGA+CGG | - | chr1_3:44450508-44450527 | None:intergenic | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | + | chr1_3:44450550-44450569 | Msa0119930:intron | 25.0% |
| !!! | AAGGGAAAAATATGGTTTTA+GGG | - | chr1_3:44450611-44450630 | None:intergenic | 25.0% |
| !! | AAAGGGAAAAATATGGTTTT+AGG | - | chr1_3:44450612-44450631 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAGGGAAAAATA+TGG | - | chr1_3:44450619-44450638 | None:intergenic | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | + | chr1_3:44450631-44450650 | Msa0119930:intron | 25.0% |
| ! | ATGAAACAACTATATTCTCA+TGG | + | chr1_3:44450875-44450894 | Msa0119930:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | - | chr1_3:44450974-44450993 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | - | chr1_3:44451170-44451189 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | - | chr1_3:44451218-44451237 | None:intergenic | 25.0% |
| ! | TTACTATCATAAGAACATTG+AGG | - | chr1_3:44451449-44451468 | None:intergenic | 25.0% |
| ! | AATAATATGCCATTAACACA+AGG | + | chr1_3:44451473-44451492 | Msa0119930:CDS | 25.0% |
| ! | ATATCTAGTAGTAATATGGT+TGG | - | chr1_3:44451565-44451584 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | - | chr1_3:44449522-44449541 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | - | chr1_3:44449650-44449669 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | + | chr1_3:44449730-44449749 | Msa0119930:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | - | chr1_3:44449770-44449789 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | + | chr1_3:44449792-44449811 | Msa0119930:CDS | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | + | chr1_3:44450293-44450312 | Msa0119930:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | - | chr1_3:44450392-44450411 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | - | chr1_3:44450434-44450453 | None:intergenic | 30.0% |
| AAGTCTACCTTCCAATTAAT+TGG | + | chr1_3:44450907-44450926 | Msa0119930:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | + | chr1_3:44450908-44450927 | Msa0119930:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | - | chr1_3:44450917-44450936 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | + | chr1_3:44450930-44450949 | Msa0119930:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | - | chr1_3:44450968-44450987 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | + | chr1_3:44451112-44451131 | Msa0119930:intron | 30.0% | |
| TGTTATAATGTTACAGGTAG+AGG | + | chr1_3:44451299-44451318 | Msa0119930:intron | 30.0% | |
| GTTATAATGTTACAGGTAGA+GGG | + | chr1_3:44451300-44451319 | Msa0119930:intron | 30.0% | |
| !! | AAGTTCAACTTCTAGTTCAA+GGG | + | chr1_3:44451367-44451386 | Msa0119930:CDS | 30.0% |
| !! | AGAAGGTTGATGATATTGAT+AGG | - | chr1_3:44451510-44451529 | None:intergenic | 30.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | - | chr1_3:44449522-44449541 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | - | chr1_3:44449650-44449669 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | + | chr1_3:44449730-44449749 | Msa0119930:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | - | chr1_3:44449770-44449789 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | + | chr1_3:44449792-44449811 | Msa0119930:CDS | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | + | chr1_3:44450293-44450312 | Msa0119930:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | - | chr1_3:44450392-44450411 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | - | chr1_3:44450434-44450453 | None:intergenic | 30.0% |
| AAGTCTACCTTCCAATTAAT+TGG | + | chr1_3:44450907-44450926 | Msa0119930:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | + | chr1_3:44450908-44450927 | Msa0119930:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | - | chr1_3:44450917-44450936 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | + | chr1_3:44450930-44450949 | Msa0119930:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | - | chr1_3:44450968-44450987 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | + | chr1_3:44451112-44451131 | Msa0119930:intron | 30.0% | |
| TGTTATAATGTTACAGGTAG+AGG | + | chr1_3:44451299-44451318 | Msa0119930:intron | 30.0% | |
| GTTATAATGTTACAGGTAGA+GGG | + | chr1_3:44451300-44451319 | Msa0119930:intron | 30.0% | |
| !! | AAGTTCAACTTCTAGTTCAA+GGG | + | chr1_3:44451367-44451386 | Msa0119930:CDS | 30.0% |
| !! | AGAAGGTTGATGATATTGAT+AGG | - | chr1_3:44451510-44451529 | None:intergenic | 30.0% |
| ATCTTTCAGAAACATCACTC+TGG | + | chr1_3:44449385-44449404 | Msa0119930:CDS | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | - | chr1_3:44449438-44449457 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | + | chr1_3:44449442-44449461 | Msa0119930:CDS | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | - | chr1_3:44449486-44449505 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | - | chr1_3:44449489-44449508 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | - | chr1_3:44449509-44449528 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | - | chr1_3:44449533-44449552 | None:intergenic | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | - | chr1_3:44449574-44449593 | None:intergenic | 35.0% |
| AATAAAACCCGAAGACGAAA+AGG | + | chr1_3:44449575-44449594 | Msa0119930:CDS | 35.0% | |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | - | chr1_3:44449585-44449604 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | - | chr1_3:44449586-44449605 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | + | chr1_3:44449672-44449691 | Msa0119930:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | - | chr1_3:44449712-44449731 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | + | chr1_3:44449729-44449748 | Msa0119930:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | + | chr1_3:44449796-44449815 | Msa0119930:CDS | 35.0% | |
| ! | GTCAGAGACTTTTTATCAAC+TGG | + | chr1_3:44449889-44449908 | Msa0119930:CDS | 35.0% |
| ! | AGAGACTTTTTATCAACTGG+AGG | + | chr1_3:44449892-44449911 | Msa0119930:CDS | 35.0% |
| GGTAAGAATGAGGTTGTTAA+TGG | + | chr1_3:44449990-44450009 | Msa0119930:CDS | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | + | chr1_3:44449996-44450015 | Msa0119930:CDS | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | + | chr1_3:44449997-44450016 | Msa0119930:CDS | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | - | chr1_3:44450083-44450102 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | - | chr1_3:44450088-44450107 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | - | chr1_3:44450388-44450407 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | + | chr1_3:44450430-44450449 | Msa0119930:intron | 35.0% | |
| !! | TTGGACGGATTATAATAGCA+TGG | - | chr1_3:44450493-44450512 | None:intergenic | 35.0% |
| TAATCTTTACGGTAGCATCT+TGG | + | chr1_3:44450522-44450541 | Msa0119930:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | - | chr1_3:44450921-44450940 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | + | chr1_3:44450918-44450937 | Msa0119930:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | + | chr1_3:44450929-44450948 | Msa0119930:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | + | chr1_3:44451115-44451134 | Msa0119930:intron | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | - | chr1_3:44451158-44451177 | None:intergenic | 35.0% | |
| GTAACATTATAACACGTGCA+TGG | - | chr1_3:44451293-44451312 | None:intergenic | 35.0% | |
| TGCACGTGTTATAATGTTAC+AGG | + | chr1_3:44451293-44451312 | Msa0119930:intron | 35.0% | |
| !! | CAAGTTCAACTTCTAGTTCA+AGG | + | chr1_3:44451366-44451385 | Msa0119930:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | - | chr1_3:44451424-44451443 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | - | chr1_3:44451485-44451504 | None:intergenic | 35.0% |
| GGGTGAGAATTAGAATTAGA+AGG | - | chr1_3:44451527-44451546 | None:intergenic | 35.0% | |
| AGATATATGTACCATCCTTG+AGG | + | chr1_3:44451579-44451598 | Msa0119930:exon | 35.0% | |
| ATCTTTCAGAAACATCACTC+TGG | + | chr1_3:44449385-44449404 | Msa0119930:CDS | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | - | chr1_3:44449438-44449457 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | + | chr1_3:44449442-44449461 | Msa0119930:CDS | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | - | chr1_3:44449486-44449505 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | - | chr1_3:44449489-44449508 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | - | chr1_3:44449509-44449528 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | - | chr1_3:44449533-44449552 | None:intergenic | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | - | chr1_3:44449574-44449593 | None:intergenic | 35.0% |
| AATAAAACCCGAAGACGAAA+AGG | + | chr1_3:44449575-44449594 | Msa0119930:CDS | 35.0% | |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | - | chr1_3:44449585-44449604 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | - | chr1_3:44449586-44449605 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | + | chr1_3:44449672-44449691 | Msa0119930:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | - | chr1_3:44449712-44449731 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | + | chr1_3:44449729-44449748 | Msa0119930:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | + | chr1_3:44449796-44449815 | Msa0119930:CDS | 35.0% | |
| ! | GTCAGAGACTTTTTATCAAC+TGG | + | chr1_3:44449889-44449908 | Msa0119930:CDS | 35.0% |
| ! | AGAGACTTTTTATCAACTGG+AGG | + | chr1_3:44449892-44449911 | Msa0119930:CDS | 35.0% |
| GGTAAGAATGAGGTTGTTAA+TGG | + | chr1_3:44449990-44450009 | Msa0119930:CDS | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | + | chr1_3:44449996-44450015 | Msa0119930:CDS | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | + | chr1_3:44449997-44450016 | Msa0119930:CDS | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | - | chr1_3:44450083-44450102 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | - | chr1_3:44450088-44450107 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | - | chr1_3:44450388-44450407 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | + | chr1_3:44450430-44450449 | Msa0119930:intron | 35.0% | |
| !! | TTGGACGGATTATAATAGCA+TGG | - | chr1_3:44450493-44450512 | None:intergenic | 35.0% |
| TAATCTTTACGGTAGCATCT+TGG | + | chr1_3:44450522-44450541 | Msa0119930:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | - | chr1_3:44450921-44450940 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | + | chr1_3:44450918-44450937 | Msa0119930:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | + | chr1_3:44450929-44450948 | Msa0119930:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | + | chr1_3:44451115-44451134 | Msa0119930:intron | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | - | chr1_3:44451158-44451177 | None:intergenic | 35.0% | |
| GTAACATTATAACACGTGCA+TGG | - | chr1_3:44451293-44451312 | None:intergenic | 35.0% | |
| TGCACGTGTTATAATGTTAC+AGG | + | chr1_3:44451293-44451312 | Msa0119930:intron | 35.0% | |
| !! | CAAGTTCAACTTCTAGTTCA+AGG | + | chr1_3:44451366-44451385 | Msa0119930:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | - | chr1_3:44451424-44451443 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | - | chr1_3:44451485-44451504 | None:intergenic | 35.0% |
| GGGTGAGAATTAGAATTAGA+AGG | - | chr1_3:44451527-44451546 | None:intergenic | 35.0% | |
| AGATATATGTACCATCCTTG+AGG | + | chr1_3:44451579-44451598 | Msa0119930:exon | 35.0% | |
| TTTCAGAAACATCACTCTGG+TGG | + | chr1_3:44449388-44449407 | Msa0119930:CDS | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | - | chr1_3:44449627-44449646 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | + | chr1_3:44449675-44449694 | Msa0119930:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | + | chr1_3:44449895-44449914 | Msa0119930:CDS | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | + | chr1_3:44449898-44449917 | Msa0119930:CDS | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | + | chr1_3:44449964-44449983 | Msa0119930:CDS | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | + | chr1_3:44449980-44449999 | Msa0119930:CDS | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | + | chr1_3:44450089-44450108 | Msa0119930:CDS | 40.0% | |
| !! | CTTCTAGTTCAAGGGTACTT+AGG | + | chr1_3:44451375-44451394 | Msa0119930:CDS | 40.0% |
| !! | TCAAGGGTACTTAGGTTGTT+TGG | + | chr1_3:44451383-44451402 | Msa0119930:CDS | 40.0% |
| !! | CAAGGGTACTTAGGTTGTTT+GGG | + | chr1_3:44451384-44451403 | Msa0119930:CDS | 40.0% |
| !! | AAGGGTACTTAGGTTGTTTG+GGG | + | chr1_3:44451385-44451404 | Msa0119930:CDS | 40.0% |
| ! | GGTGTTGAAGAATCATGTTC+AGG | - | chr1_3:44451428-44451447 | None:intergenic | 40.0% |
| ATATGTACCATCCTTGAGGT+TGG | + | chr1_3:44451583-44451602 | Msa0119930:three_prime_UTR | 40.0% | |
| TATGTACCATCCTTGAGGTT+GGG | + | chr1_3:44451584-44451603 | Msa0119930:three_prime_UTR | 40.0% | |
| TAACTTAGAACCCAACCTCA+AGG | - | chr1_3:44451597-44451616 | None:intergenic | 40.0% | |
| TTTCAGAAACATCACTCTGG+TGG | + | chr1_3:44449388-44449407 | Msa0119930:CDS | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | - | chr1_3:44449627-44449646 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | + | chr1_3:44449675-44449694 | Msa0119930:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | + | chr1_3:44449895-44449914 | Msa0119930:CDS | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | + | chr1_3:44449898-44449917 | Msa0119930:CDS | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | + | chr1_3:44449964-44449983 | Msa0119930:CDS | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | + | chr1_3:44449980-44449999 | Msa0119930:CDS | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | + | chr1_3:44450089-44450108 | Msa0119930:CDS | 40.0% | |
| !! | CTTCTAGTTCAAGGGTACTT+AGG | + | chr1_3:44451375-44451394 | Msa0119930:CDS | 40.0% |
| !! | TCAAGGGTACTTAGGTTGTT+TGG | + | chr1_3:44451383-44451402 | Msa0119930:CDS | 40.0% |
| !! | CAAGGGTACTTAGGTTGTTT+GGG | + | chr1_3:44451384-44451403 | Msa0119930:CDS | 40.0% |
| !! | AAGGGTACTTAGGTTGTTTG+GGG | + | chr1_3:44451385-44451404 | Msa0119930:CDS | 40.0% |
| ! | GGTGTTGAAGAATCATGTTC+AGG | - | chr1_3:44451428-44451447 | None:intergenic | 40.0% |
| ATATGTACCATCCTTGAGGT+TGG | + | chr1_3:44451583-44451602 | Msa0119930:three_prime_UTR | 40.0% | |
| TATGTACCATCCTTGAGGTT+GGG | + | chr1_3:44451584-44451603 | Msa0119930:three_prime_UTR | 40.0% | |
| TAACTTAGAACCCAACCTCA+AGG | - | chr1_3:44451597-44451616 | None:intergenic | 40.0% | |
| AATTGAACCATGGAGGTTGG+TGG | - | chr1_3:44449479-44449498 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | - | chr1_3:44449482-44449501 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | - | chr1_3:44449568-44449587 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | - | chr1_3:44449571-44449590 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | - | chr1_3:44449618-44449637 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | - | chr1_3:44449619-44449638 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | - | chr1_3:44449709-44449728 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | + | chr1_3:44449739-44449758 | Msa0119930:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | + | chr1_3:44449760-44449779 | Msa0119930:CDS | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | + | chr1_3:44449831-44449850 | Msa0119930:CDS | 45.0% | |
| CATCATGGTAAGGGTAGTGA+TGG | + | chr1_3:44449963-44449982 | Msa0119930:CDS | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | + | chr1_3:44450000-44450019 | Msa0119930:CDS | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | - | chr1_3:44450053-44450072 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | - | chr1_3:44450059-44450078 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | - | chr1_3:44451327-44451346 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | - | chr1_3:44451328-44451347 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | + | chr1_3:44451331-44451350 | Msa0119930:CDS | 45.0% | |
| GAACTTGAACTCTTTCCCAC+CGG | - | chr1_3:44451353-44451372 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTTGGGGTCAACA+TGG | + | chr1_3:44451394-44451413 | Msa0119930:CDS | 45.0% |
| TTCTAATTCTCACCCTCACG+TGG | + | chr1_3:44451532-44451551 | Msa0119930:CDS | 45.0% | |
| TTAGAACCCAACCTCAAGGA+TGG | - | chr1_3:44451593-44451612 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | - | chr1_3:44449479-44449498 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | - | chr1_3:44449482-44449501 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | - | chr1_3:44449568-44449587 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | - | chr1_3:44449571-44449590 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | - | chr1_3:44449618-44449637 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | - | chr1_3:44449619-44449638 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | - | chr1_3:44449709-44449728 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | + | chr1_3:44449739-44449758 | Msa0119930:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | + | chr1_3:44449760-44449779 | Msa0119930:CDS | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | + | chr1_3:44449831-44449850 | Msa0119930:CDS | 45.0% | |
| CATCATGGTAAGGGTAGTGA+TGG | + | chr1_3:44449963-44449982 | Msa0119930:CDS | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | + | chr1_3:44450000-44450019 | Msa0119930:CDS | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | - | chr1_3:44450053-44450072 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | - | chr1_3:44450059-44450078 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | - | chr1_3:44451327-44451346 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | - | chr1_3:44451328-44451347 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | + | chr1_3:44451331-44451350 | Msa0119930:CDS | 45.0% | |
| GAACTTGAACTCTTTCCCAC+CGG | - | chr1_3:44451353-44451372 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTTGGGGTCAACA+TGG | + | chr1_3:44451394-44451413 | Msa0119930:CDS | 45.0% |
| TTCTAATTCTCACCCTCACG+TGG | + | chr1_3:44451532-44451551 | Msa0119930:CDS | 45.0% | |
| TTAGAACCCAACCTCAAGGA+TGG | - | chr1_3:44451593-44451612 | None:intergenic | 45.0% | |
| TGATGGAGGGACCAAGAAGT+TGG | - | chr1_3:44449456-44449475 | None:intergenic | 50.0% | |
| CCCTTAACACCTTCTGACGT+AGG | + | chr1_3:44449615-44449634 | Msa0119930:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | + | chr1_3:44449934-44449953 | Msa0119930:CDS | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | + | chr1_3:44449969-44449988 | Msa0119930:CDS | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | - | chr1_3:44450027-44450046 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | + | chr1_3:44451118-44451137 | Msa0119930:intron | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | + | chr1_3:44451321-44451340 | Msa0119930:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | + | chr1_3:44451335-44451354 | Msa0119930:CDS | 50.0% | |
| TGATGGAGGGACCAAGAAGT+TGG | - | chr1_3:44449456-44449475 | None:intergenic | 50.0% | |
| CCCTTAACACCTTCTGACGT+AGG | + | chr1_3:44449615-44449634 | Msa0119930:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | + | chr1_3:44449934-44449953 | Msa0119930:CDS | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | + | chr1_3:44449969-44449988 | Msa0119930:CDS | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | - | chr1_3:44450027-44450046 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | + | chr1_3:44451118-44451137 | Msa0119930:intron | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | + | chr1_3:44451321-44451340 | Msa0119930:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | + | chr1_3:44451335-44451354 | Msa0119930:CDS | 50.0% | |
| !! | TGGAGGTTGGTGGTGATGGA+GGG | - | chr1_3:44449469-44449488 | None:intergenic | 55.0% |
| !! | ATGGAGGTTGGTGGTGATGG+AGG | - | chr1_3:44449470-44449489 | None:intergenic | 55.0% |
| TCCATCACCACCAACCTCCA+TGG | + | chr1_3:44449469-44449488 | Msa0119930:CDS | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | - | chr1_3:44449473-44449492 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | + | chr1_3:44449903-44449922 | Msa0119930:CDS | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | + | chr1_3:44449904-44449923 | Msa0119930:CDS | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | + | chr1_3:44449917-44449936 | Msa0119930:CDS | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | + | chr1_3:44449933-44449952 | Msa0119930:CDS | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | + | chr1_3:44449935-44449954 | Msa0119930:CDS | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | + | chr1_3:44449939-44449958 | Msa0119930:CDS | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | + | chr1_3:44449953-44449972 | Msa0119930:CDS | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | + | chr1_3:44449954-44449973 | Msa0119930:CDS | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | + | chr1_3:44450008-44450027 | Msa0119930:CDS | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | + | chr1_3:44450009-44450028 | Msa0119930:CDS | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | + | chr1_3:44451334-44451353 | Msa0119930:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | - | chr1_3:44451340-44451359 | None:intergenic | 55.0% |
| !! | GTTGGTGACGTACCACGTGA+GGG | - | chr1_3:44451547-44451566 | None:intergenic | 55.0% |
| !! | TGGAGGTTGGTGGTGATGGA+GGG | - | chr1_3:44449469-44449488 | None:intergenic | 55.0% |
| !! | ATGGAGGTTGGTGGTGATGG+AGG | - | chr1_3:44449470-44449489 | None:intergenic | 55.0% |
| TCCATCACCACCAACCTCCA+TGG | + | chr1_3:44449469-44449488 | Msa0119930:CDS | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | - | chr1_3:44449473-44449492 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | + | chr1_3:44449903-44449922 | Msa0119930:CDS | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | + | chr1_3:44449904-44449923 | Msa0119930:CDS | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | + | chr1_3:44449917-44449936 | Msa0119930:CDS | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | + | chr1_3:44449933-44449952 | Msa0119930:CDS | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | + | chr1_3:44449935-44449954 | Msa0119930:CDS | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | + | chr1_3:44449939-44449958 | Msa0119930:CDS | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | + | chr1_3:44449953-44449972 | Msa0119930:CDS | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | + | chr1_3:44449954-44449973 | Msa0119930:CDS | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | + | chr1_3:44450008-44450027 | Msa0119930:CDS | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | + | chr1_3:44450009-44450028 | Msa0119930:CDS | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | + | chr1_3:44451334-44451353 | Msa0119930:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | - | chr1_3:44451340-44451359 | None:intergenic | 55.0% |
| !! | GTTGGTGACGTACCACGTGA+GGG | - | chr1_3:44451547-44451566 | None:intergenic | 55.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | + | chr1_3:44449905-44449924 | Msa0119930:CDS | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | + | chr1_3:44449938-44449957 | Msa0119930:CDS | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | + | chr1_3:44449948-44449967 | Msa0119930:CDS | 60.0% | |
| !! | GGTTGGTGACGTACCACGTG+AGG | - | chr1_3:44451548-44451567 | None:intergenic | 60.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | + | chr1_3:44449905-44449924 | Msa0119930:CDS | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | + | chr1_3:44449938-44449957 | Msa0119930:CDS | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | + | chr1_3:44449948-44449967 | Msa0119930:CDS | 60.0% | |
| !! | GGTTGGTGACGTACCACGTG+AGG | - | chr1_3:44451548-44451567 | None:intergenic | 60.0% |
| GCAGACTCCGCCGAGTGCAA+AGG | + | chr1_3:44449699-44449718 | Msa0119930:CDS | 65.0% | |
| GCAGACTCCGCCGAGTGCAA+AGG | + | chr1_3:44449699-44449718 | Msa0119930:CDS | 65.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | - | chr1_3:44449690-44449709 | None:intergenic | 75.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | - | chr1_3:44449690-44449709 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44449381 | 44451709 | 44449381 | ID=Msa0119930;Name=Msa0119930 |
| chr1_3 | mRNA | 44449381 | 44451709 | 44449381 | ID=Msa0119930-mRNA-1;Parent=Msa0119930;Name=Msa0119930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|129|331 |
| chr1_3 | exon | 44449381 | 44450110 | 44449381 | ID=Msa0119930-mRNA-1:exon:13250;Parent=Msa0119930-mRNA-1 |
| chr1_3 | exon | 44451315 | 44451709 | 44451315 | ID=Msa0119930-mRNA-1:exon:13251;Parent=Msa0119930-mRNA-1 |
| chr1_3 | CDS | 44449381 | 44450110 | 44449381 | ID=Msa0119930-mRNA-1:cds;Parent=Msa0119930-mRNA-1 |
| chr1_3 | CDS | 44451315 | 44451580 | 44451315 | ID=Msa0119930-mRNA-1:cds;Parent=Msa0119930-mRNA-1 |
| chr1_3 | three_prime_UTR | 44451581 | 44451709 | 44451581 | ID=Msa0119930-mRNA-1:three_prime_utr;Parent=Msa0119930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
