Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024260 | sp|Q9FNI3|Y5625_ARATH | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 3.50e-63 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0024260 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024260 | Msa0071970 | 0.814364 | 1.599491e-51 | -8.615850e-47 |
| Msa0024260 | Msa0119930 | 0.938803 | 3.673731e-99 | -8.615850e-47 |
| Msa0024260 | Msa0163320 | 0.958881 | 7.822360e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024260 | MtrunA17_Chr1g0178071 | 96.716 | 335 | 6 | 2 | 1 | 335 | 1 | 330 | 0.0 | 672 |
| Msa0024260 | MtrunA17_Chr7g0266821 | 52.647 | 340 | 101 | 12 | 6 | 333 | 11 | 302 | 1.91e-85 | 259 |
| Msa0024260 | MtrunA17_Chr8g0345771 | 70.796 | 113 | 29 | 2 | 75 | 185 | 167 | 277 | 3.88e-48 | 169 |
| Msa0024260 | MtrunA17_Chr7g0276471 | 69.725 | 109 | 29 | 2 | 79 | 185 | 117 | 223 | 4.97e-45 | 159 |
| Msa0024260 | MtrunA17_Chr5g0422501 | 66.087 | 115 | 33 | 1 | 76 | 184 | 232 | 346 | 1.52e-44 | 157 |
| Msa0024260 | MtrunA17_Chr1g0198661 | 61.157 | 121 | 36 | 2 | 76 | 185 | 188 | 308 | 1.44e-40 | 146 |
| Msa0024260 | MtrunA17_Chr1g0213701 | 50.467 | 107 | 43 | 2 | 68 | 169 | 145 | 246 | 1.55e-28 | 112 |
| Msa0024260 | MtrunA17_Chr5g0432721 | 36.296 | 135 | 65 | 6 | 58 | 185 | 302 | 422 | 3.26e-15 | 76.6 |
| Msa0024260 | MtrunA17_Chr4g0012861 | 35.338 | 133 | 66 | 6 | 58 | 183 | 295 | 414 | 4.46e-15 | 76.3 |
| Msa0024260 | MtrunA17_Chr3g0107701 | 35.758 | 165 | 81 | 9 | 58 | 211 | 319 | 469 | 1.96e-14 | 74.3 |
| Msa0024260 | MtrunA17_Chr2g0281191 | 36.667 | 120 | 62 | 5 | 66 | 183 | 345 | 452 | 2.64e-14 | 73.9 |
| Msa0024260 | MtrunA17_Chr7g0244871 | 41.758 | 91 | 46 | 3 | 79 | 167 | 12 | 97 | 6.09e-14 | 67.0 |
| Msa0024260 | MtrunA17_Chr8g0389081 | 38.053 | 113 | 64 | 3 | 71 | 183 | 130 | 236 | 1.23e-12 | 68.9 |
| Msa0024260 | MtrunA17_Chr3g0115271 | 35.897 | 117 | 69 | 4 | 69 | 183 | 105 | 217 | 8.41e-12 | 66.2 |
| Msa0024260 | MtrunA17_Chr1g0199681 | 31.293 | 147 | 81 | 4 | 75 | 220 | 188 | 315 | 1.21e-11 | 65.9 |
| Msa0024260 | MtrunA17_Chr2g0326761 | 36.697 | 109 | 66 | 2 | 75 | 183 | 103 | 208 | 1.74e-11 | 65.1 |
| Msa0024260 | MtrunA17_Chr4g0028971 | 32.432 | 148 | 83 | 4 | 75 | 217 | 104 | 239 | 2.12e-11 | 65.1 |
| Msa0024260 | MtrunA17_Chr4g0029671 | 30.178 | 169 | 112 | 3 | 72 | 240 | 158 | 320 | 4.30e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024260 | AT5G06250.5 | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 2.47e-64 | 205 |
| Msa0024260 | AT5G06250.2 | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 3.56e-64 | 205 |
| Msa0024260 | AT5G06250.4 | 52.727 | 220 | 77 | 4 | 73 | 284 | 39 | 239 | 5.51e-64 | 204 |
| Msa0024260 | AT3G11580.1 | 52.968 | 219 | 73 | 7 | 75 | 283 | 24 | 222 | 1.13e-61 | 198 |
| Msa0024260 | AT3G11580.3 | 52.968 | 219 | 73 | 7 | 75 | 283 | 24 | 222 | 1.56e-60 | 198 |
| Msa0024260 | AT5G06250.1 | 51.339 | 224 | 67 | 5 | 73 | 288 | 39 | 228 | 2.42e-60 | 194 |
| Msa0024260 | AT5G06250.3 | 51.786 | 224 | 66 | 5 | 73 | 288 | 39 | 228 | 3.43e-60 | 194 |
| Msa0024260 | AT2G36080.1 | 49.780 | 227 | 63 | 3 | 74 | 299 | 32 | 208 | 1.51e-58 | 189 |
| Msa0024260 | AT2G36080.3 | 49.561 | 228 | 64 | 3 | 74 | 300 | 32 | 209 | 1.70e-58 | 189 |
| Msa0024260 | AT3G11580.4 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0024260 | AT3G11580.2 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0024260 | AT3G11580.5 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0024260 | AT2G36080.4 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.61e-55 | 179 |
| Msa0024260 | AT2G36080.2 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.61e-55 | 179 |
| Msa0024260 | AT3G61970.1 | 43.805 | 226 | 91 | 6 | 75 | 283 | 18 | 224 | 6.09e-50 | 169 |
| Msa0024260 | AT2G46870.1 | 69.912 | 113 | 29 | 2 | 75 | 184 | 30 | 140 | 1.91e-47 | 162 |
| Msa0024260 | AT1G01030.2 | 43.882 | 237 | 100 | 11 | 69 | 283 | 45 | 270 | 2.15e-47 | 163 |
| Msa0024260 | AT1G68840.2 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 5.12e-46 | 160 |
| Msa0024260 | AT1G68840.1 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 5.12e-46 | 160 |
| Msa0024260 | AT1G13260.1 | 66.087 | 115 | 38 | 1 | 77 | 191 | 185 | 298 | 5.76e-46 | 159 |
| Msa0024260 | AT3G25730.1 | 62.097 | 124 | 45 | 2 | 77 | 198 | 180 | 303 | 4.63e-45 | 157 |
| Msa0024260 | AT1G01030.1 | 40.000 | 260 | 100 | 11 | 69 | 283 | 45 | 293 | 5.52e-44 | 155 |
| Msa0024260 | AT1G25560.1 | 59.375 | 128 | 46 | 1 | 76 | 197 | 191 | 318 | 2.13e-43 | 153 |
| Msa0024260 | AT4G01500.1 | 56.198 | 121 | 40 | 2 | 74 | 185 | 30 | 146 | 2.80e-37 | 136 |
| Msa0024260 | AT1G50680.1 | 50.000 | 98 | 40 | 1 | 79 | 167 | 156 | 253 | 1.93e-25 | 104 |
| Msa0024260 | AT1G51120.1 | 49.474 | 95 | 42 | 1 | 79 | 167 | 177 | 271 | 7.08e-25 | 103 |
| Msa0024260 | AT2G30470.1 | 35.766 | 137 | 76 | 5 | 79 | 210 | 294 | 423 | 2.80e-15 | 77.4 |
| Msa0024260 | AT4G32010.1 | 31.944 | 144 | 89 | 5 | 79 | 220 | 285 | 421 | 4.23e-14 | 73.6 |
| Msa0024260 | AT4G32010.2 | 31.944 | 144 | 89 | 5 | 79 | 220 | 281 | 417 | 4.54e-14 | 73.6 |
| Msa0024260 | AT1G77850.2 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 2.46e-12 | 68.2 |
| Msa0024260 | AT1G77850.1 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 2.52e-12 | 68.2 |
| Msa0024260 | AT1G35240.1 | 33.793 | 145 | 87 | 4 | 64 | 201 | 105 | 247 | 2.07e-11 | 65.5 |
| Msa0024260 | AT1G35520.1 | 33.103 | 145 | 88 | 4 | 64 | 201 | 105 | 247 | 2.74e-11 | 65.1 |
| Msa0024260 | AT1G34310.1 | 32.414 | 145 | 89 | 4 | 64 | 201 | 105 | 247 | 4.30e-11 | 64.3 |
Find 86 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGTACTTAGGTTGTTT+GGG | 0.235789 | 1_1:-46608870 | Msa0024260:CDS |
| TCAAGGGTACTTAGGTTGTT+TGG | 0.238957 | 1_1:-46608871 | Msa0024260:CDS |
| TTCCCACCGGTTTCGTCCTT+TGG | 0.253544 | 1_1:+46608917 | None:intergenic |
| CGTCCTTTGGTTCTGACTTT+GGG | 0.260868 | 1_1:+46608930 | None:intergenic |
| TCTAGAGTACCTTGTGTTAA+TGG | 0.288145 | 1_1:+46608772 | None:intergenic |
| TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1_1:-46610811 | Msa0024260:CDS |
| GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1_1:-46610493 | Msa0024260:CDS |
| TCGTCCTTTGGTTCTGACTT+TGG | 0.367217 | 1_1:+46608929 | None:intergenic |
| ACATATATCTAGTAGTAATA+TGG | 0.372904 | 1_1:+46608688 | None:intergenic |
| CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1_1:+46610638 | None:intergenic |
| GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1_1:-46610263 | Msa0024260:CDS |
| CTTCTAGTTCAAGGGTACTT+AGG | 0.380189 | 1_1:-46608879 | Msa0024260:CDS |
| CAAGTTCAACTTCTAGTTCA+AGG | 0.381802 | 1_1:-46608888 | Msa0024260:CDS |
| GGGTGAGAATTAGAATTAGA+AGG | 0.383626 | 1_1:+46608730 | None:intergenic |
| TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1_1:+46610637 | None:intergenic |
| AGAAGGTTGATGATATTGAT+AGG | 0.411150 | 1_1:+46608747 | None:intergenic |
| CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1_1:-46610461 | Msa0024260:CDS |
| TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1_1:+46610203 | None:intergenic |
| GGTGTTGAAGAATCATGTTC+AGG | 0.437272 | 1_1:+46608829 | None:intergenic |
| AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1_1:-46610678 | Msa0024260:CDS |
| TATGTACCATCCTTGAGGTT+GGG | 0.466712 | 1_1:-46608670 | Msa0024260:three_prime_UTR |
| TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1_1:-46610349 | Msa0024260:CDS |
| AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1_1:-46610422 | Msa0024260:CDS |
| AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1_1:-46610257 | Msa0024260:CDS |
| ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1_1:+46610783 | None:intergenic |
| TCAGAACCAAAGGACGAAAC+CGG | 0.504470 | 1_1:-46608923 | Msa0024260:CDS |
| ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1_1:-46610350 | Msa0024260:CDS |
| AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1_1:-46610305 | Msa0024260:CDS |
| GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1_1:-46610336 | Msa0024260:CDS |
| CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1_1:-46610290 | Msa0024260:CDS |
| GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1_1:-46610457 | Msa0024260:CDS |
| ATATGTACCATCCTTGAGGT+TGG | 0.536417 | 1_1:-46608671 | Msa0024260:three_prime_UTR |
| AAGTTCAACTTCTAGTTCAA+GGG | 0.539417 | 1_1:-46608887 | Msa0024260:CDS |
| AAGGGTACTTAGGTTGTTTG+GGG | 0.543731 | 1_1:-46608869 | Msa0024260:CDS |
| TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1_1:+46610544 | None:intergenic |
| ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1_1:-46610244 | Msa0024260:CDS |
| AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1_1:-46610514 | Msa0024260:CDS |
| GAACTTGAACTCTTTCCCAC+CGG | 0.558795 | 1_1:+46608904 | None:intergenic |
| AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1_1:-46610300 | Msa0024260:CDS |
| TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1_1:-46610784 | Msa0024260:CDS |
| AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1_1:-46610245 | Msa0024260:CDS |
| GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1_1:+46610566 | None:intergenic |
| CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1_1:-46610164 | Msa0024260:intron |
| GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1_1:-46610554 | Msa0024260:CDS |
| TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1_1:+46610486 | None:intergenic |
| TTGAAGAATCATGTTCAGGT+TGG | 0.578477 | 1_1:+46608833 | None:intergenic |
| TAGGTTGTTTGGGGTCAACA+TGG | 0.578736 | 1_1:-46608860 | Msa0024260:CDS |
| ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1_1:+46610229 | None:intergenic |
| GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1_1:-46610315 | Msa0024260:CDS |
| TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1_1:+46610800 | None:intergenic |
| GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1_1:-46610314 | Msa0024260:CDS |
| AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1_1:+46610173 | None:intergenic |
| TTTCAGAAACATCACTCTGG+TGG | 0.596606 | 1_1:-46610877 | Msa0024260:CDS |
| ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1_1:-46610256 | Msa0024260:CDS |
| GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1_1:+46610774 | None:intergenic |
| AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1_1:+46610197 | None:intergenic |
| CTTAGAAGAACCCAACCTCA+AGG | 0.600550 | 1_1:+46608660 | None:intergenic |
| GTTATAATGTTACAGGTAGA+GGG | 0.600635 | 1_1:-46608954 | Msa0024260:intron |
| TTACTATCATAAGAACATTG+AGG | 0.605601 | 1_1:+46608808 | None:intergenic |
| TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1_1:+46610767 | None:intergenic |
| TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1_1:-46610273 | Msa0024260:CDS |
| CATGAAGACATTGATCATGT+TGG | 0.609605 | 1_1:+46610168 | None:intergenic |
| ATCTTTCAGAAACATCACTC+TGG | 0.613066 | 1_1:-46610880 | Msa0024260:CDS |
| GGTCCCAAAGTCAGAACCAA+AGG | 0.613585 | 1_1:-46608933 | Msa0024260:CDS |
| GAAGAACCCAACCTCAAGGA+TGG | 0.613969 | 1_1:+46608664 | None:intergenic |
| ATATCTAGTAGTAATATGGT+TGG | 0.616517 | 1_1:+46608692 | None:intergenic |
| AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1_1:-46610319 | Msa0024260:CDS |
| GAACCAAAGGACGAAACCGG+TGG | 0.630994 | 1_1:-46608920 | Msa0024260:CDS |
| CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1_1:-46610320 | Msa0024260:CDS |
| GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1_1:-46610299 | Msa0024260:CDS |
| ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1_1:-46610289 | Msa0024260:CDS |
| CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1_1:-46610638 | Msa0024260:CDS |
| GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1_1:-46610284 | Msa0024260:CDS |
| AACCAAAGGACGAAACCGGT+GGG | 0.646214 | 1_1:-46608919 | Msa0024260:CDS |
| TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1_1:+46610547 | None:intergenic |
| AGATATATGTACCATCCTTG+AGG | 0.651399 | 1_1:-46608675 | Msa0024260:three_prime_UTR |
| CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1_1:-46610348 | Msa0024260:CDS |
| GGTTGGTGACGTACCACGTG+AGG | 0.657771 | 1_1:+46608709 | None:intergenic |
| AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1_1:+46610777 | None:intergenic |
| TTCTAATTCTCACCCTCACG+TGG | 0.665652 | 1_1:-46608722 | Msa0024260:CDS |
| GTTGGTGACGTACCACGTGA+GGG | 0.676010 | 1_1:+46608710 | None:intergenic |
| GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1_1:+46610818 | None:intergenic |
| AATAATATGCCATTAACACA+AGG | 0.689101 | 1_1:-46608781 | Msa0024260:CDS |
| ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1_1:+46610770 | None:intergenic |
| AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1_1:-46610253 | Msa0024260:CDS |
| GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1_1:-46610318 | Msa0024260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATATATTTATA+TGG | + | chr1_1:46609418-46609437 | None:intergenic | 0.0% |
| !! | ATTATAATTATATATTTATA+TGG | + | chr1_1:46609418-46609437 | None:intergenic | 0.0% |
| !! | AAAGAAAAAAAGAAAAAAAA+AGG | + | chr1_1:46609877-46609896 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | - | chr1_1:46610289-46610308 | Msa0024260:CDS | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | - | chr1_1:46610445-46610464 | Msa0024260:CDS | 10.0% |
| !! | AAAGAAAAAAAGAAAAAAAA+AGG | + | chr1_1:46609877-46609896 | None:intergenic | 10.0% |
| !! | TTTCAATAATAAAAGTTTAT+AGG | - | chr1_1:46610289-46610308 | Msa0024260:CDS | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | - | chr1_1:46610445-46610464 | Msa0024260:CDS | 10.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | + | chr1_1:46609391-46609410 | None:intergenic | 15.0% |
| !! | AATTTGACAATTAATCTTTA+CGG | - | chr1_1:46609703-46609722 | Msa0024260:intron | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | - | chr1_1:46609960-46609979 | Msa0024260:intron | 15.0% |
| !!! | ATCTTCTTTGTTTTTTTTTT+TGG | + | chr1_1:46610048-46610067 | None:intergenic | 15.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | + | chr1_1:46609391-46609410 | None:intergenic | 15.0% |
| !! | AATTTGACAATTAATCTTTA+CGG | - | chr1_1:46609703-46609722 | Msa0024260:intron | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | - | chr1_1:46609960-46609979 | Msa0024260:intron | 15.0% |
| !!! | ATCTTCTTTGTTTTTTTTTT+TGG | + | chr1_1:46610048-46610067 | None:intergenic | 15.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | + | chr1_1:46609392-46609411 | None:intergenic | 20.0% |
| !! | TATCAATCAAAGTTGAATTA+GGG | + | chr1_1:46609449-46609468 | None:intergenic | 20.0% |
| !!! | TTTGATTGATAGTACTTAAA+TGG | - | chr1_1:46609458-46609477 | Msa0024260:intron | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | - | chr1_1:46609459-46609478 | Msa0024260:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | + | chr1_1:46609704-46609723 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+GGG | + | chr1_1:46609821-46609840 | None:intergenic | 20.0% |
| !! | ACTCATAAAATGAAAGAAAA+AGG | + | chr1_1:46609822-46609841 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | + | chr1_1:46609951-46609970 | None:intergenic | 20.0% |
| !! | ATGAAACAATTATATTCTCA+TGG | - | chr1_1:46610066-46610085 | Msa0024260:intron | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | - | chr1_1:46610383-46610402 | Msa0024260:CDS | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | + | chr1_1:46610410-46610429 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | + | chr1_1:46610411-46610430 | None:intergenic | 20.0% |
| !! | ACATATATCTAGTAGTAATA+TGG | + | chr1_1:46610760-46610779 | None:intergenic | 20.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | + | chr1_1:46609392-46609411 | None:intergenic | 20.0% |
| !! | TATCAATCAAAGTTGAATTA+GGG | + | chr1_1:46609449-46609468 | None:intergenic | 20.0% |
| !!! | TTTGATTGATAGTACTTAAA+TGG | - | chr1_1:46609458-46609477 | Msa0024260:intron | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | - | chr1_1:46609459-46609478 | Msa0024260:intron | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | + | chr1_1:46609704-46609723 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+GGG | + | chr1_1:46609821-46609840 | None:intergenic | 20.0% |
| !! | ACTCATAAAATGAAAGAAAA+AGG | + | chr1_1:46609822-46609841 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | + | chr1_1:46609951-46609970 | None:intergenic | 20.0% |
| !! | ATGAAACAATTATATTCTCA+TGG | - | chr1_1:46610066-46610085 | Msa0024260:intron | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | - | chr1_1:46610383-46610402 | Msa0024260:CDS | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | + | chr1_1:46610410-46610429 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | + | chr1_1:46610411-46610430 | None:intergenic | 20.0% |
| !! | ACATATATCTAGTAGTAATA+TGG | + | chr1_1:46610760-46610779 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | + | chr1_1:46608854-46608873 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | + | chr1_1:46608855-46608874 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | + | chr1_1:46609387-46609406 | None:intergenic | 25.0% |
| ! | CTATCAATCAAAGTTGAATT+AGG | + | chr1_1:46609450-46609469 | None:intergenic | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | - | chr1_1:46609544-46609563 | Msa0024260:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | - | chr1_1:46609583-46609602 | Msa0024260:intron | 25.0% |
| ! | AGATTAATTGTCAAATTGGA+CGG | + | chr1_1:46609700-46609719 | None:intergenic | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | - | chr1_1:46609742-46609761 | Msa0024260:intron | 25.0% |
| !!! | AAGGGAAAAATATGGTTTTA+GGG | + | chr1_1:46609803-46609822 | None:intergenic | 25.0% |
| !! | AAAGGGAAAAATATGGTTTT+AGG | + | chr1_1:46609804-46609823 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAGGGAAAAATA+TGG | + | chr1_1:46609811-46609830 | None:intergenic | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | - | chr1_1:46609823-46609842 | Msa0024260:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | + | chr1_1:46610165-46610184 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | + | chr1_1:46610361-46610380 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | + | chr1_1:46610409-46610428 | None:intergenic | 25.0% |
| ! | TTACTATCATAAGAACATTG+AGG | + | chr1_1:46610640-46610659 | None:intergenic | 25.0% |
| ! | AATAATATGCCATTAACACA+AGG | - | chr1_1:46610664-46610683 | Msa0024260:CDS | 25.0% |
| ! | ATATCTAGTAGTAATATGGT+TGG | + | chr1_1:46610756-46610775 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | + | chr1_1:46608854-46608873 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | + | chr1_1:46608855-46608874 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | + | chr1_1:46609387-46609406 | None:intergenic | 25.0% |
| ! | CTATCAATCAAAGTTGAATT+AGG | + | chr1_1:46609450-46609469 | None:intergenic | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | - | chr1_1:46609544-46609563 | Msa0024260:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | - | chr1_1:46609583-46609602 | Msa0024260:intron | 25.0% |
| ! | AGATTAATTGTCAAATTGGA+CGG | + | chr1_1:46609700-46609719 | None:intergenic | 25.0% |
| ! | TTCGCTTTACACTAAAAATT+AGG | - | chr1_1:46609742-46609761 | Msa0024260:intron | 25.0% |
| !!! | AAGGGAAAAATATGGTTTTA+GGG | + | chr1_1:46609803-46609822 | None:intergenic | 25.0% |
| !! | AAAGGGAAAAATATGGTTTT+AGG | + | chr1_1:46609804-46609823 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAGGGAAAAATA+TGG | + | chr1_1:46609811-46609830 | None:intergenic | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | - | chr1_1:46609823-46609842 | Msa0024260:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | + | chr1_1:46610165-46610184 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | + | chr1_1:46610361-46610380 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | + | chr1_1:46610409-46610428 | None:intergenic | 25.0% |
| ! | TTACTATCATAAGAACATTG+AGG | + | chr1_1:46610640-46610659 | None:intergenic | 25.0% |
| ! | AATAATATGCCATTAACACA+AGG | - | chr1_1:46610664-46610683 | Msa0024260:CDS | 25.0% |
| ! | ATATCTAGTAGTAATATGGT+TGG | + | chr1_1:46610756-46610775 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | + | chr1_1:46608714-46608733 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | + | chr1_1:46608842-46608861 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | - | chr1_1:46608922-46608941 | Msa0024260:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | + | chr1_1:46608962-46608981 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | - | chr1_1:46608984-46609003 | Msa0024260:intron | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | - | chr1_1:46609485-46609504 | Msa0024260:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | + | chr1_1:46609584-46609603 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | + | chr1_1:46609626-46609645 | None:intergenic | 30.0% |
| AAGTCTACCTTCCAATTAAT+TGG | - | chr1_1:46610098-46610117 | Msa0024260:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | - | chr1_1:46610099-46610118 | Msa0024260:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | + | chr1_1:46610108-46610127 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | - | chr1_1:46610121-46610140 | Msa0024260:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | + | chr1_1:46610159-46610178 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | - | chr1_1:46610303-46610322 | Msa0024260:CDS | 30.0% | |
| TGTTATAATGTTACAGGTAG+AGG | - | chr1_1:46610490-46610509 | Msa0024260:CDS | 30.0% | |
| GTTATAATGTTACAGGTAGA+GGG | - | chr1_1:46610491-46610510 | Msa0024260:CDS | 30.0% | |
| !! | AAGTTCAACTTCTAGTTCAA+GGG | - | chr1_1:46610558-46610577 | Msa0024260:CDS | 30.0% |
| !! | AGAAGGTTGATGATATTGAT+AGG | + | chr1_1:46610701-46610720 | None:intergenic | 30.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | + | chr1_1:46608714-46608733 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | + | chr1_1:46608842-46608861 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | - | chr1_1:46608922-46608941 | Msa0024260:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | + | chr1_1:46608962-46608981 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | - | chr1_1:46608984-46609003 | Msa0024260:intron | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | - | chr1_1:46609485-46609504 | Msa0024260:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | + | chr1_1:46609584-46609603 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | + | chr1_1:46609626-46609645 | None:intergenic | 30.0% |
| AAGTCTACCTTCCAATTAAT+TGG | - | chr1_1:46610098-46610117 | Msa0024260:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | - | chr1_1:46610099-46610118 | Msa0024260:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | + | chr1_1:46610108-46610127 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | - | chr1_1:46610121-46610140 | Msa0024260:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | + | chr1_1:46610159-46610178 | None:intergenic | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | - | chr1_1:46610303-46610322 | Msa0024260:CDS | 30.0% | |
| TGTTATAATGTTACAGGTAG+AGG | - | chr1_1:46610490-46610509 | Msa0024260:CDS | 30.0% | |
| GTTATAATGTTACAGGTAGA+GGG | - | chr1_1:46610491-46610510 | Msa0024260:CDS | 30.0% | |
| !! | AAGTTCAACTTCTAGTTCAA+GGG | - | chr1_1:46610558-46610577 | Msa0024260:CDS | 30.0% |
| !! | AGAAGGTTGATGATATTGAT+AGG | + | chr1_1:46610701-46610720 | None:intergenic | 30.0% |
| ATCTTTCAGAAACATCACTC+TGG | - | chr1_1:46608565-46608584 | Msa0024260:three_prime_UTR | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | + | chr1_1:46608630-46608649 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | - | chr1_1:46608634-46608653 | Msa0024260:three_prime_UTR | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | + | chr1_1:46608678-46608697 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | + | chr1_1:46608681-46608700 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | + | chr1_1:46608701-46608720 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | + | chr1_1:46608725-46608744 | None:intergenic | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | + | chr1_1:46608766-46608785 | None:intergenic | 35.0% |
| AATAAAACCCGAAGACGAAA+AGG | - | chr1_1:46608767-46608786 | Msa0024260:CDS | 35.0% | |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | + | chr1_1:46608777-46608796 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | + | chr1_1:46608778-46608797 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | - | chr1_1:46608864-46608883 | Msa0024260:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | + | chr1_1:46608904-46608923 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | - | chr1_1:46608921-46608940 | Msa0024260:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | - | chr1_1:46608988-46609007 | Msa0024260:intron | 35.0% | |
| ! | GTCAGAGACTTTTTATCAAC+TGG | - | chr1_1:46609081-46609100 | Msa0024260:intron | 35.0% |
| ! | AGAGACTTTTTATCAACTGG+AGG | - | chr1_1:46609084-46609103 | Msa0024260:intron | 35.0% |
| GGTAAGAATGAGGTTGTTAA+TGG | - | chr1_1:46609182-46609201 | Msa0024260:intron | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | - | chr1_1:46609188-46609207 | Msa0024260:intron | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | - | chr1_1:46609189-46609208 | Msa0024260:intron | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | + | chr1_1:46609275-46609294 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | + | chr1_1:46609280-46609299 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | + | chr1_1:46609580-46609599 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | - | chr1_1:46609622-46609641 | Msa0024260:intron | 35.0% | |
| !! | TTGGACGGATTATAATAGCA+TGG | + | chr1_1:46609685-46609704 | None:intergenic | 35.0% |
| TAATCTTTACGGTAGCATCT+TGG | - | chr1_1:46609714-46609733 | Msa0024260:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | + | chr1_1:46610112-46610131 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | - | chr1_1:46610109-46610128 | Msa0024260:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | - | chr1_1:46610120-46610139 | Msa0024260:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | - | chr1_1:46610306-46610325 | Msa0024260:CDS | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | + | chr1_1:46610349-46610368 | None:intergenic | 35.0% | |
| GTAACATTATAACACGTGCA+TGG | + | chr1_1:46610484-46610503 | None:intergenic | 35.0% | |
| TGCACGTGTTATAATGTTAC+AGG | - | chr1_1:46610484-46610503 | Msa0024260:CDS | 35.0% | |
| !! | CAAGTTCAACTTCTAGTTCA+AGG | - | chr1_1:46610557-46610576 | Msa0024260:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | + | chr1_1:46610615-46610634 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | + | chr1_1:46610676-46610695 | None:intergenic | 35.0% |
| GGGTGAGAATTAGAATTAGA+AGG | + | chr1_1:46610718-46610737 | None:intergenic | 35.0% | |
| AGATATATGTACCATCCTTG+AGG | - | chr1_1:46610770-46610789 | Msa0024260:CDS | 35.0% | |
| ATCTTTCAGAAACATCACTC+TGG | - | chr1_1:46608565-46608584 | Msa0024260:three_prime_UTR | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | + | chr1_1:46608630-46608649 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | - | chr1_1:46608634-46608653 | Msa0024260:three_prime_UTR | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | + | chr1_1:46608678-46608697 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | + | chr1_1:46608681-46608700 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | + | chr1_1:46608701-46608720 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | + | chr1_1:46608725-46608744 | None:intergenic | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | + | chr1_1:46608766-46608785 | None:intergenic | 35.0% |
| AATAAAACCCGAAGACGAAA+AGG | - | chr1_1:46608767-46608786 | Msa0024260:CDS | 35.0% | |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | + | chr1_1:46608777-46608796 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | + | chr1_1:46608778-46608797 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | - | chr1_1:46608864-46608883 | Msa0024260:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | + | chr1_1:46608904-46608923 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | - | chr1_1:46608921-46608940 | Msa0024260:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | - | chr1_1:46608988-46609007 | Msa0024260:intron | 35.0% | |
| ! | GTCAGAGACTTTTTATCAAC+TGG | - | chr1_1:46609081-46609100 | Msa0024260:intron | 35.0% |
| ! | AGAGACTTTTTATCAACTGG+AGG | - | chr1_1:46609084-46609103 | Msa0024260:intron | 35.0% |
| GGTAAGAATGAGGTTGTTAA+TGG | - | chr1_1:46609182-46609201 | Msa0024260:intron | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | - | chr1_1:46609188-46609207 | Msa0024260:intron | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | - | chr1_1:46609189-46609208 | Msa0024260:intron | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | + | chr1_1:46609275-46609294 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | + | chr1_1:46609280-46609299 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | + | chr1_1:46609580-46609599 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | - | chr1_1:46609622-46609641 | Msa0024260:intron | 35.0% | |
| !! | TTGGACGGATTATAATAGCA+TGG | + | chr1_1:46609685-46609704 | None:intergenic | 35.0% |
| TAATCTTTACGGTAGCATCT+TGG | - | chr1_1:46609714-46609733 | Msa0024260:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | + | chr1_1:46610112-46610131 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | - | chr1_1:46610109-46610128 | Msa0024260:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | - | chr1_1:46610120-46610139 | Msa0024260:intron | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | - | chr1_1:46610306-46610325 | Msa0024260:CDS | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | + | chr1_1:46610349-46610368 | None:intergenic | 35.0% | |
| GTAACATTATAACACGTGCA+TGG | + | chr1_1:46610484-46610503 | None:intergenic | 35.0% | |
| TGCACGTGTTATAATGTTAC+AGG | - | chr1_1:46610484-46610503 | Msa0024260:CDS | 35.0% | |
| !! | CAAGTTCAACTTCTAGTTCA+AGG | - | chr1_1:46610557-46610576 | Msa0024260:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | + | chr1_1:46610615-46610634 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | + | chr1_1:46610676-46610695 | None:intergenic | 35.0% |
| GGGTGAGAATTAGAATTAGA+AGG | + | chr1_1:46610718-46610737 | None:intergenic | 35.0% | |
| AGATATATGTACCATCCTTG+AGG | - | chr1_1:46610770-46610789 | Msa0024260:CDS | 35.0% | |
| TTTCAGAAACATCACTCTGG+TGG | - | chr1_1:46608568-46608587 | Msa0024260:three_prime_UTR | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | + | chr1_1:46608819-46608838 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | - | chr1_1:46608867-46608886 | Msa0024260:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | - | chr1_1:46609087-46609106 | Msa0024260:intron | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | - | chr1_1:46609090-46609109 | Msa0024260:intron | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | - | chr1_1:46609156-46609175 | Msa0024260:intron | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | - | chr1_1:46609172-46609191 | Msa0024260:intron | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | - | chr1_1:46609281-46609300 | Msa0024260:intron | 40.0% | |
| !! | CTTCTAGTTCAAGGGTACTT+AGG | - | chr1_1:46610566-46610585 | Msa0024260:CDS | 40.0% |
| !! | TCAAGGGTACTTAGGTTGTT+TGG | - | chr1_1:46610574-46610593 | Msa0024260:CDS | 40.0% |
| !! | CAAGGGTACTTAGGTTGTTT+GGG | - | chr1_1:46610575-46610594 | Msa0024260:CDS | 40.0% |
| !! | AAGGGTACTTAGGTTGTTTG+GGG | - | chr1_1:46610576-46610595 | Msa0024260:CDS | 40.0% |
| ! | GGTGTTGAAGAATCATGTTC+AGG | + | chr1_1:46610619-46610638 | None:intergenic | 40.0% |
| ATATGTACCATCCTTGAGGT+TGG | - | chr1_1:46610774-46610793 | Msa0024260:CDS | 40.0% | |
| TATGTACCATCCTTGAGGTT+GGG | - | chr1_1:46610775-46610794 | Msa0024260:CDS | 40.0% | |
| TTTCAGAAACATCACTCTGG+TGG | - | chr1_1:46608568-46608587 | Msa0024260:three_prime_UTR | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | + | chr1_1:46608819-46608838 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | - | chr1_1:46608867-46608886 | Msa0024260:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | - | chr1_1:46609087-46609106 | Msa0024260:intron | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | - | chr1_1:46609090-46609109 | Msa0024260:intron | 40.0% |
| ATCATGGTAAGGGTAGTGAT+GGG | - | chr1_1:46609156-46609175 | Msa0024260:intron | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | - | chr1_1:46609172-46609191 | Msa0024260:intron | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | - | chr1_1:46609281-46609300 | Msa0024260:intron | 40.0% | |
| !! | CTTCTAGTTCAAGGGTACTT+AGG | - | chr1_1:46610566-46610585 | Msa0024260:CDS | 40.0% |
| !! | TCAAGGGTACTTAGGTTGTT+TGG | - | chr1_1:46610574-46610593 | Msa0024260:CDS | 40.0% |
| !! | CAAGGGTACTTAGGTTGTTT+GGG | - | chr1_1:46610575-46610594 | Msa0024260:CDS | 40.0% |
| !! | AAGGGTACTTAGGTTGTTTG+GGG | - | chr1_1:46610576-46610595 | Msa0024260:CDS | 40.0% |
| ! | GGTGTTGAAGAATCATGTTC+AGG | + | chr1_1:46610619-46610638 | None:intergenic | 40.0% |
| ATATGTACCATCCTTGAGGT+TGG | - | chr1_1:46610774-46610793 | Msa0024260:CDS | 40.0% | |
| TATGTACCATCCTTGAGGTT+GGG | - | chr1_1:46610775-46610794 | Msa0024260:CDS | 40.0% | |
| TGATGGAGAGACCAAGAAGT+TGG | + | chr1_1:46608648-46608667 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | + | chr1_1:46608671-46608690 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | + | chr1_1:46608674-46608693 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | + | chr1_1:46608760-46608779 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | + | chr1_1:46608763-46608782 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | + | chr1_1:46608810-46608829 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | + | chr1_1:46608811-46608830 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | + | chr1_1:46608901-46608920 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | - | chr1_1:46608931-46608950 | Msa0024260:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | - | chr1_1:46608952-46608971 | Msa0024260:intron | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | - | chr1_1:46609023-46609042 | Msa0024260:intron | 45.0% | |
| CATCATGGTAAGGGTAGTGA+TGG | - | chr1_1:46609155-46609174 | Msa0024260:intron | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | - | chr1_1:46609192-46609211 | Msa0024260:intron | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | + | chr1_1:46609245-46609264 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | + | chr1_1:46609251-46609270 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | + | chr1_1:46610518-46610537 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | + | chr1_1:46610519-46610538 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | - | chr1_1:46610522-46610541 | Msa0024260:CDS | 45.0% | |
| GAACTTGAACTCTTTCCCAC+CGG | + | chr1_1:46610544-46610563 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTTGGGGTCAACA+TGG | - | chr1_1:46610585-46610604 | Msa0024260:CDS | 45.0% |
| TTCTAATTCTCACCCTCACG+TGG | - | chr1_1:46610723-46610742 | Msa0024260:CDS | 45.0% | |
| CTTAGAAGAACCCAACCTCA+AGG | + | chr1_1:46610788-46610807 | None:intergenic | 45.0% | |
| TGATGGAGAGACCAAGAAGT+TGG | + | chr1_1:46608648-46608667 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | + | chr1_1:46608671-46608690 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | + | chr1_1:46608674-46608693 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | + | chr1_1:46608760-46608779 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | + | chr1_1:46608763-46608782 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | + | chr1_1:46608810-46608829 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | + | chr1_1:46608811-46608830 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | + | chr1_1:46608901-46608920 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | - | chr1_1:46608931-46608950 | Msa0024260:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | - | chr1_1:46608952-46608971 | Msa0024260:intron | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | - | chr1_1:46609023-46609042 | Msa0024260:intron | 45.0% | |
| CATCATGGTAAGGGTAGTGA+TGG | - | chr1_1:46609155-46609174 | Msa0024260:intron | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | - | chr1_1:46609192-46609211 | Msa0024260:intron | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | + | chr1_1:46609245-46609264 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | + | chr1_1:46609251-46609270 | None:intergenic | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | + | chr1_1:46610518-46610537 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | + | chr1_1:46610519-46610538 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | - | chr1_1:46610522-46610541 | Msa0024260:CDS | 45.0% | |
| GAACTTGAACTCTTTCCCAC+CGG | + | chr1_1:46610544-46610563 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTTGGGGTCAACA+TGG | - | chr1_1:46610585-46610604 | Msa0024260:CDS | 45.0% |
| TTCTAATTCTCACCCTCACG+TGG | - | chr1_1:46610723-46610742 | Msa0024260:CDS | 45.0% | |
| CTTAGAAGAACCCAACCTCA+AGG | + | chr1_1:46610788-46610807 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTTTTTTTAATT+AGG | - | chr1_1:46610818-46610837 | Msa0024260:CDS | 5.0% |
| !!! | CTTTTTTTTTTTTTTTAATT+AGG | - | chr1_1:46610818-46610837 | Msa0024260:CDS | 5.0% |
| CCCTTAACACCTTCTGACGT+AGG | - | chr1_1:46608807-46608826 | Msa0024260:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | - | chr1_1:46609126-46609145 | Msa0024260:intron | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | - | chr1_1:46609161-46609180 | Msa0024260:intron | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | + | chr1_1:46609219-46609238 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | - | chr1_1:46610309-46610328 | Msa0024260:CDS | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | - | chr1_1:46610512-46610531 | Msa0024260:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | - | chr1_1:46610526-46610545 | Msa0024260:CDS | 50.0% | |
| GAAGAACCCAACCTCAAGGA+TGG | + | chr1_1:46610784-46610803 | None:intergenic | 50.0% | |
| CCCTTAACACCTTCTGACGT+AGG | - | chr1_1:46608807-46608826 | Msa0024260:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | - | chr1_1:46609126-46609145 | Msa0024260:intron | 50.0% | |
| ! | GGTAAGGGTAGTGATGGGAA+TGG | - | chr1_1:46609161-46609180 | Msa0024260:intron | 50.0% |
| ATGCGCAGAATAGAACCCTC+TGG | + | chr1_1:46609219-46609238 | None:intergenic | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | - | chr1_1:46610309-46610328 | Msa0024260:CDS | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | - | chr1_1:46610512-46610531 | Msa0024260:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | - | chr1_1:46610526-46610545 | Msa0024260:CDS | 50.0% | |
| GAAGAACCCAACCTCAAGGA+TGG | + | chr1_1:46610784-46610803 | None:intergenic | 50.0% | |
| TCCATCACCACCAACCTCCA+TGG | - | chr1_1:46608661-46608680 | Msa0024260:three_prime_UTR | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | + | chr1_1:46608665-46608684 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | - | chr1_1:46609095-46609114 | Msa0024260:intron | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | - | chr1_1:46609096-46609115 | Msa0024260:intron | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | - | chr1_1:46609109-46609128 | Msa0024260:intron | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | - | chr1_1:46609125-46609144 | Msa0024260:intron | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | - | chr1_1:46609127-46609146 | Msa0024260:intron | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | - | chr1_1:46609131-46609150 | Msa0024260:intron | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | - | chr1_1:46609145-46609164 | Msa0024260:intron | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | - | chr1_1:46609146-46609165 | Msa0024260:intron | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | - | chr1_1:46609200-46609219 | Msa0024260:intron | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | - | chr1_1:46609201-46609220 | Msa0024260:intron | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | - | chr1_1:46610525-46610544 | Msa0024260:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | + | chr1_1:46610531-46610550 | None:intergenic | 55.0% |
| !! | GTTGGTGACGTACCACGTGA+GGG | + | chr1_1:46610738-46610757 | None:intergenic | 55.0% |
| TCCATCACCACCAACCTCCA+TGG | - | chr1_1:46608661-46608680 | Msa0024260:three_prime_UTR | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | + | chr1_1:46608665-46608684 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | - | chr1_1:46609095-46609114 | Msa0024260:intron | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | - | chr1_1:46609096-46609115 | Msa0024260:intron | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | - | chr1_1:46609109-46609128 | Msa0024260:intron | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | - | chr1_1:46609125-46609144 | Msa0024260:intron | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | - | chr1_1:46609127-46609146 | Msa0024260:intron | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | - | chr1_1:46609131-46609150 | Msa0024260:intron | 55.0% | |
| AGGGGTGGGACATCATGGTA+AGG | - | chr1_1:46609145-46609164 | Msa0024260:intron | 55.0% | |
| GGGGTGGGACATCATGGTAA+GGG | - | chr1_1:46609146-46609165 | Msa0024260:intron | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | - | chr1_1:46609200-46609219 | Msa0024260:intron | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | - | chr1_1:46609201-46609220 | Msa0024260:intron | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | - | chr1_1:46610525-46610544 | Msa0024260:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | + | chr1_1:46610531-46610550 | None:intergenic | 55.0% |
| !! | GTTGGTGACGTACCACGTGA+GGG | + | chr1_1:46610738-46610757 | None:intergenic | 55.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | - | chr1_1:46609097-46609116 | Msa0024260:intron | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | - | chr1_1:46609130-46609149 | Msa0024260:intron | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | - | chr1_1:46609140-46609159 | Msa0024260:intron | 60.0% | |
| !! | GGTTGGTGACGTACCACGTG+AGG | + | chr1_1:46610739-46610758 | None:intergenic | 60.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | - | chr1_1:46609097-46609116 | Msa0024260:intron | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | - | chr1_1:46609130-46609149 | Msa0024260:intron | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | - | chr1_1:46609140-46609159 | Msa0024260:intron | 60.0% | |
| !! | GGTTGGTGACGTACCACGTG+AGG | + | chr1_1:46610739-46610758 | None:intergenic | 60.0% |
| GCAGACTCCGCCGAGTGCAA+AGG | - | chr1_1:46608891-46608910 | Msa0024260:CDS | 65.0% | |
| GCAGACTCCGCCGAGTGCAA+AGG | - | chr1_1:46608891-46608910 | Msa0024260:CDS | 65.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | + | chr1_1:46608882-46608901 | None:intergenic | 75.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | + | chr1_1:46608882-46608901 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46608561 | 46610906 | 46608561 | ID=Msa0024260;Name=Msa0024260 |
| chr1_1 | mRNA | 46608561 | 46610906 | 46608561 | ID=Msa0024260-mRNA-1;Parent=Msa0024260;Name=Msa0024260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|135|335 |
| chr1_1 | exon | 46608561 | 46608961 | 46608561 | ID=Msa0024260-mRNA-1:exon:13256;Parent=Msa0024260-mRNA-1 |
| chr1_1 | exon | 46610165 | 46610906 | 46610165 | ID=Msa0024260-mRNA-1:exon:13255;Parent=Msa0024260-mRNA-1 |
| chr1_1 | CDS | 46610165 | 46610906 | 46610165 | ID=Msa0024260-mRNA-1:cds;Parent=Msa0024260-mRNA-1 |
| chr1_1 | CDS | 46608696 | 46608961 | 46608696 | ID=Msa0024260-mRNA-1:cds;Parent=Msa0024260-mRNA-1 |
| chr1_1 | three_prime_UTR | 46608561 | 46608695 | 46608561 | ID=Msa0024260-mRNA-1:three_prime_utr;Parent=Msa0024260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
