Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075570 | XP_013468532.1 | 89.855 | 207 | 18 | 3 | 1 | 204 | 1 | 207 | 8.65e-131 | 376 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075570 | sp|Q9SLB7|LBD16_ARATH | 47.581 | 248 | 81 | 7 | 1 | 202 | 1 | 245 | 1.03e-61 | 195 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075570 | A0A072VKM2 | 89.855 | 207 | 18 | 3 | 1 | 204 | 1 | 207 | 4.13e-131 | 376 |
Gene ID | Type | Classification |
---|---|---|
Msa0075570 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0075570 | Msa0123540 | 0.814409 | 1.563547e-51 | -8.615850e-47 |
Msa0075570 | Msa0168000 | 0.803616 | 3.202708e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075570 | MtrunA17_Chr1g0184281 | 89.855 | 207 | 18 | 3 | 1 | 204 | 1 | 207 | 7.96e-135 | 376 |
Msa0075570 | MtrunA17_Chr7g0260971 | 59.009 | 222 | 67 | 6 | 1 | 202 | 1 | 218 | 1.36e-77 | 231 |
Msa0075570 | MtrunA17_Chr7g0261031 | 55.414 | 157 | 60 | 2 | 12 | 168 | 5 | 151 | 9.40e-49 | 158 |
Msa0075570 | MtrunA17_Chr8g0351721 | 63.248 | 117 | 43 | 0 | 6 | 122 | 9 | 125 | 2.48e-48 | 157 |
Msa0075570 | MtrunA17_Chr1g0184271 | 70.297 | 101 | 30 | 0 | 15 | 115 | 12 | 112 | 6.64e-48 | 156 |
Msa0075570 | MtrunA17_Chr6g0460951 | 68.317 | 101 | 32 | 0 | 15 | 115 | 40 | 140 | 5.48e-46 | 151 |
Msa0075570 | MtrunA17_Chr8g0351701 | 71.579 | 95 | 27 | 0 | 15 | 109 | 23 | 117 | 6.73e-46 | 151 |
Msa0075570 | MtrunA17_Chr7g0245871 | 66.316 | 95 | 32 | 0 | 15 | 109 | 27 | 121 | 1.08e-42 | 143 |
Msa0075570 | MtrunA17_Chr5g0435641 | 62.887 | 97 | 36 | 0 | 13 | 109 | 5 | 101 | 2.74e-42 | 140 |
Msa0075570 | MtrunA17_Chr2g0311601 | 54.867 | 113 | 50 | 1 | 5 | 117 | 3 | 114 | 7.22e-41 | 136 |
Msa0075570 | MtrunA17_Chr4g0043421 | 52.991 | 117 | 54 | 1 | 1 | 117 | 1 | 116 | 2.27e-40 | 135 |
Msa0075570 | MtrunA17_Chr7g0245861 | 67.742 | 93 | 28 | 2 | 12 | 102 | 9 | 101 | 4.03e-38 | 128 |
Msa0075570 | MtrunA17_Chr3g0106101 | 48.837 | 129 | 65 | 1 | 11 | 139 | 3 | 130 | 4.93e-38 | 129 |
Msa0075570 | MtrunA17_Chr5g0437571 | 59.406 | 101 | 40 | 1 | 15 | 115 | 6 | 105 | 5.29e-38 | 129 |
Msa0075570 | MtrunA17_Chr7g0227511 | 54.545 | 121 | 54 | 1 | 7 | 127 | 3 | 122 | 5.85e-38 | 129 |
Msa0075570 | MtrunA17_Chr6g0449641 | 47.917 | 144 | 58 | 4 | 12 | 150 | 6 | 137 | 1.16e-36 | 125 |
Msa0075570 | MtrunA17_Chr3g0114061 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 3.59e-36 | 124 |
Msa0075570 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 42 | 1 | 11 | 115 | 3 | 106 | 6.20e-36 | 127 |
Msa0075570 | MtrunA17_Chr4g0058651 | 62.105 | 95 | 35 | 1 | 15 | 109 | 11 | 104 | 7.71e-36 | 124 |
Msa0075570 | MtrunA17_Chr3g0117121 | 57.407 | 108 | 45 | 1 | 7 | 114 | 2 | 108 | 1.30e-35 | 124 |
Msa0075570 | MtrunA17_Chr5g0402611 | 58.095 | 105 | 43 | 1 | 11 | 115 | 4 | 107 | 2.59e-35 | 126 |
Msa0075570 | MtrunA17_Chr5g0438091 | 53.465 | 101 | 46 | 1 | 15 | 115 | 39 | 138 | 2.28e-34 | 120 |
Msa0075570 | MtrunA17_Chr6g0449651 | 54.717 | 106 | 47 | 1 | 12 | 117 | 64 | 168 | 2.75e-34 | 120 |
Msa0075570 | MtrunA17_Chr6g0460941 | 62.500 | 88 | 33 | 0 | 15 | 102 | 7 | 94 | 2.94e-34 | 117 |
Msa0075570 | MtrunA17_Chr3g0129071 | 52.727 | 110 | 50 | 2 | 15 | 124 | 47 | 154 | 9.63e-34 | 120 |
Msa0075570 | MtrunA17_Chr3g0113891 | 50.442 | 113 | 54 | 2 | 1 | 113 | 1 | 111 | 1.51e-33 | 118 |
Msa0075570 | MtrunA17_Chr3g0115431 | 57.426 | 101 | 42 | 1 | 15 | 115 | 9 | 108 | 1.95e-33 | 119 |
Msa0075570 | MtrunA17_Chr5g0437401 | 50.909 | 110 | 52 | 2 | 6 | 115 | 3 | 110 | 1.68e-32 | 115 |
Msa0075570 | MtrunA17_Chr4g0030001 | 48.000 | 125 | 62 | 3 | 2 | 125 | 11 | 133 | 6.48e-32 | 114 |
Msa0075570 | MtrunA17_Chr8g0353981 | 61.176 | 85 | 32 | 1 | 11 | 95 | 3 | 86 | 4.74e-31 | 113 |
Msa0075570 | MtrunA17_Chr5g0432451 | 51.261 | 119 | 57 | 1 | 15 | 133 | 43 | 160 | 2.89e-30 | 111 |
Msa0075570 | MtrunA17_Chr1g0200201 | 51.961 | 102 | 48 | 1 | 16 | 117 | 73 | 173 | 3.42e-30 | 110 |
Msa0075570 | MtrunA17_Chr5g0444351 | 48.000 | 100 | 51 | 1 | 16 | 115 | 6 | 104 | 1.09e-27 | 102 |
Msa0075570 | MtrunA17_Chr7g0225111 | 46.000 | 100 | 53 | 1 | 16 | 115 | 6 | 104 | 4.31e-27 | 99.8 |
Msa0075570 | MtrunA17_Chr8g0374601 | 45.455 | 99 | 53 | 1 | 15 | 113 | 26 | 123 | 7.54e-23 | 92.8 |
Msa0075570 | MtrunA17_Chr8g0374591 | 40.594 | 101 | 59 | 1 | 15 | 115 | 8 | 107 | 4.67e-21 | 84.7 |
Msa0075570 | MtrunA17_Chr4g0059901 | 42.718 | 103 | 58 | 1 | 16 | 118 | 11 | 112 | 4.01e-20 | 85.5 |
Msa0075570 | MtrunA17_Chr2g0330201 | 39.000 | 100 | 60 | 1 | 16 | 115 | 20 | 118 | 3.38e-19 | 83.6 |
Msa0075570 | MtrunA17_Chr6g0452691 | 45.679 | 81 | 42 | 2 | 16 | 95 | 10 | 89 | 1.37e-18 | 79.7 |
Msa0075570 | MtrunA17_Chr6g0452671 | 38.776 | 98 | 59 | 1 | 16 | 113 | 12 | 108 | 3.12e-18 | 79.0 |
Msa0075570 | MtrunA17_Chr4g0040831 | 37.273 | 110 | 58 | 2 | 16 | 115 | 16 | 124 | 9.17e-17 | 75.1 |
Msa0075570 | MtrunA17_Chr6g0452661 | 36.364 | 99 | 61 | 2 | 16 | 113 | 10 | 107 | 9.19e-17 | 76.3 |
Msa0075570 | MtrunA17_Chr8g0374581 | 37.500 | 104 | 63 | 2 | 15 | 117 | 8 | 110 | 1.03e-16 | 75.5 |
Msa0075570 | MtrunA17_Chr8g0342351 | 37.864 | 103 | 63 | 1 | 16 | 118 | 13 | 114 | 2.73e-16 | 75.1 |
Msa0075570 | MtrunA17_Chr4g0055441 | 38.542 | 96 | 53 | 4 | 16 | 106 | 3 | 97 | 3.74e-14 | 67.0 |
Msa0075570 | MtrunA17_Chr5g0439111 | 33.043 | 115 | 75 | 2 | 16 | 129 | 10 | 123 | 1.99e-13 | 66.6 |
Msa0075570 | MtrunA17_Chr2g0326041 | 48.148 | 54 | 27 | 1 | 8 | 61 | 26 | 78 | 7.27e-13 | 62.0 |
Msa0075570 | MtrunA17_Chr4g0046201 | 30.682 | 88 | 60 | 1 | 16 | 103 | 7 | 93 | 2.73e-11 | 61.2 |
Msa0075570 | MtrunA17_Chr2g0326051 | 51.852 | 54 | 26 | 0 | 64 | 117 | 8 | 61 | 4.52e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075570 | AT2G42430.1 | 47.581 | 248 | 81 | 7 | 1 | 202 | 1 | 245 | 1.04e-62 | 195 |
Msa0075570 | AT3G58190.1 | 60.317 | 126 | 48 | 1 | 15 | 138 | 11 | 136 | 6.81e-48 | 156 |
Msa0075570 | AT3G03760.1 | 68.868 | 106 | 33 | 0 | 15 | 120 | 51 | 156 | 9.13e-48 | 157 |
Msa0075570 | AT2G42440.1 | 61.345 | 119 | 46 | 0 | 12 | 130 | 4 | 122 | 5.18e-47 | 155 |
Msa0075570 | AT2G45420.1 | 71.429 | 98 | 28 | 0 | 18 | 115 | 40 | 137 | 6.32e-46 | 152 |
Msa0075570 | AT4G00210.1 | 60.526 | 114 | 43 | 1 | 11 | 122 | 5 | 118 | 1.29e-45 | 150 |
Msa0075570 | AT2G31310.1 | 63.107 | 103 | 38 | 0 | 13 | 115 | 5 | 107 | 1.25e-44 | 147 |
Msa0075570 | AT2G45410.1 | 69.388 | 98 | 30 | 0 | 18 | 115 | 19 | 116 | 1.63e-44 | 147 |
Msa0075570 | AT4G00220.1 | 67.347 | 98 | 32 | 0 | 18 | 115 | 20 | 117 | 3.15e-44 | 147 |
Msa0075570 | AT5G06080.1 | 61.905 | 105 | 40 | 0 | 11 | 115 | 3 | 107 | 2.04e-43 | 144 |
Msa0075570 | AT3G27650.1 | 60.000 | 100 | 39 | 1 | 15 | 114 | 39 | 137 | 2.11e-38 | 130 |
Msa0075570 | AT5G63090.4 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
Msa0075570 | AT5G63090.3 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
Msa0075570 | AT5G63090.2 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
Msa0075570 | AT5G63090.1 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
Msa0075570 | AT2G30130.1 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 9.43e-36 | 124 |
Msa0075570 | AT1G31320.1 | 55.208 | 96 | 42 | 1 | 7 | 102 | 5 | 99 | 2.76e-34 | 120 |
Msa0075570 | AT1G07900.1 | 53.398 | 103 | 47 | 1 | 15 | 117 | 33 | 134 | 5.57e-34 | 120 |
Msa0075570 | AT5G66870.1 | 55.238 | 105 | 46 | 1 | 11 | 115 | 3 | 106 | 2.13e-33 | 122 |
Msa0075570 | AT2G30340.2 | 47.934 | 121 | 60 | 2 | 15 | 133 | 53 | 172 | 3.05e-33 | 120 |
Msa0075570 | AT2G30340.1 | 47.934 | 121 | 60 | 2 | 15 | 133 | 52 | 171 | 3.65e-33 | 120 |
Msa0075570 | AT1G16530.1 | 45.968 | 124 | 65 | 2 | 15 | 137 | 14 | 136 | 9.82e-33 | 116 |
Msa0075570 | AT2G28500.1 | 48.696 | 115 | 57 | 2 | 15 | 129 | 55 | 167 | 1.02e-32 | 118 |
Msa0075570 | AT2G23660.2 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 3.09e-32 | 118 |
Msa0075570 | AT2G23660.3 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 3.09e-32 | 118 |
Msa0075570 | AT2G23660.1 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 3.09e-32 | 118 |
Msa0075570 | AT3G26660.1 | 44.248 | 113 | 61 | 2 | 16 | 127 | 6 | 117 | 1.73e-31 | 111 |
Msa0075570 | AT3G11090.1 | 48.649 | 111 | 55 | 2 | 5 | 115 | 2 | 110 | 1.62e-30 | 110 |
Msa0075570 | AT3G26620.1 | 44.340 | 106 | 58 | 1 | 16 | 121 | 6 | 110 | 1.81e-30 | 108 |
Msa0075570 | AT1G65620.1 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.31e-29 | 108 |
Msa0075570 | AT1G65620.4 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.31e-29 | 108 |
Msa0075570 | AT1G65620.3 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.31e-29 | 108 |
Msa0075570 | AT1G65620.5 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.31e-29 | 108 |
Msa0075570 | AT1G65620.2 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.31e-29 | 108 |
Msa0075570 | AT2G40470.2 | 52.632 | 114 | 53 | 1 | 15 | 128 | 20 | 132 | 3.08e-29 | 108 |
Msa0075570 | AT2G40470.1 | 52.632 | 114 | 53 | 1 | 15 | 128 | 45 | 157 | 4.62e-29 | 108 |
Msa0075570 | AT3G50510.1 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 2.22e-23 | 92.8 |
Msa0075570 | AT3G50510.2 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 2.22e-23 | 92.8 |
Msa0075570 | AT1G72980.1 | 35.000 | 120 | 77 | 1 | 12 | 131 | 10 | 128 | 1.79e-17 | 77.8 |
Msa0075570 | AT5G35900.1 | 40.000 | 100 | 59 | 1 | 16 | 115 | 6 | 104 | 2.08e-17 | 77.4 |
Msa0075570 | AT3G47870.1 | 35.000 | 100 | 64 | 1 | 16 | 115 | 37 | 135 | 1.34e-16 | 77.0 |
Msa0075570 | AT3G13850.1 | 38.000 | 100 | 61 | 1 | 16 | 115 | 37 | 135 | 1.77e-16 | 75.9 |
Msa0075570 | AT1G06280.1 | 45.570 | 79 | 34 | 2 | 16 | 90 | 25 | 98 | 6.72e-16 | 73.2 |
Find 42 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTATTATAGATCCTGTTTA+TGG | 0.144291 | 1_2:-51002644 | Msa0075570:CDS |
GCAGCTATTCATAAAGTATT+TGG | 0.189937 | 1_2:-51002755 | Msa0075570:CDS |
TTCATATTTGTGGGACAAAA+TGG | 0.226031 | 1_2:+51001120 | None:intergenic |
TAAAAGAATGTCATATGATT+TGG | 0.245406 | 1_2:-51001004 | Msa0075570:CDS |
AATGATGGGAAACTATAATT+AGG | 0.317238 | 1_2:-51000956 | None:intergenic |
TGAATAGCTGCAAATCTTGC+AGG | 0.346463 | 1_2:+51002767 | None:intergenic |
CATGGACATCCTGAGGATCT+AGG | 0.355593 | 1_2:+51002866 | None:intergenic |
AGGGAGCTCTTAGGAGATAT+AGG | 0.377379 | 1_2:+51001096 | None:intergenic |
AAAAGAATGTCATATGATTT+GGG | 0.393592 | 1_2:-51001003 | Msa0075570:CDS |
TGATTTATGGCTTCTACAAA+TGG | 0.394946 | 1_2:-51002896 | None:intergenic |
GATATAGGGTTCATATTTGT+GGG | 0.408424 | 1_2:+51001111 | None:intergenic |
CCTAGAGGAGACAGAGAACT+TGG | 0.411652 | 1_2:-51001187 | Msa0075570:CDS |
ATTGAGTCAAGGGAGCTCTT+AGG | 0.417545 | 1_2:+51001087 | None:intergenic |
CCAAGTTCTCTGTCTCCTCT+AGG | 0.426551 | 1_2:+51001187 | None:intergenic |
AACTTGGAGAATCAATGGTC+AGG | 0.427708 | 1_2:-51001171 | Msa0075570:CDS |
AGAAACATCTCTCGGAATGA+TGG | 0.438279 | 1_2:-51000971 | Msa0075570:CDS |
GGCTCTAGCCCTAGATCCTC+AGG | 0.441315 | 1_2:-51002875 | Msa0075570:CDS |
GCAATTGCGGCAACAGCATC+GGG | 0.447204 | 1_2:+51002683 | None:intergenic |
AGATATAGGGTTCATATTTG+TGG | 0.449622 | 1_2:+51001110 | None:intergenic |
GGGAGCTCTTAGGAGATATA+GGG | 0.451691 | 1_2:+51001097 | None:intergenic |
TGTGATACACAACCATAAAC+AGG | 0.455984 | 1_2:+51002632 | None:intergenic |
CAGAGAACTTGGAGAATCAA+TGG | 0.493895 | 1_2:-51001176 | Msa0075570:CDS |
AGCAATTGCGGCAACAGCAT+CGG | 0.501002 | 1_2:+51002682 | None:intergenic |
GAAACATCTCTCGGAATGAT+GGG | 0.517494 | 1_2:-51000970 | Msa0075570:CDS |
ATGGACATCCTGAGGATCTA+GGG | 0.518326 | 1_2:+51002867 | None:intergenic |
ATTCAGAAGTACACTTTCTA+CGG | 0.522613 | 1_2:+51002825 | None:intergenic |
AGAAATTTGCATGCCCCACA+TGG | 0.523694 | 1_2:+51002848 | None:intergenic |
GCTAAAATCAATTGAGTCAA+GGG | 0.525535 | 1_2:+51001077 | None:intergenic |
TGCTAAAATCAATTGAGTCA+AGG | 0.542231 | 1_2:+51001076 | None:intergenic |
TCTTGCAGGTCCTTGCTCAC+AGG | 0.545761 | 1_2:+51002781 | None:intergenic |
ACTTGGAGAATCAATGGTCA+GGG | 0.558166 | 1_2:-51001170 | Msa0075570:CDS |
AGGTAAATTCAGTAGCATCT+TGG | 0.559995 | 1_2:+51002718 | None:intergenic |
ATTCCGAGAGATGTTTCTTG+CGG | 0.572848 | 1_2:+51000976 | None:intergenic |
GCATCGGGACGATCATGAGC+AGG | 0.573962 | 1_2:+51002698 | None:intergenic |
TTGAGCTTCATAAGCAATTG+CGG | 0.600657 | 1_2:+51002670 | None:intergenic |
GATCCTCAGGATGTCCATGT+GGG | 0.601232 | 1_2:-51002862 | Msa0075570:CDS |
AGATCCTCAGGATGTCCATG+TGG | 0.614428 | 1_2:-51002863 | Msa0075570:CDS |
AGCACAACTAATGCAAGTGA+AGG | 0.620211 | 1_2:-51001232 | Msa0075570:CDS |
GAGCCGCAAGAAACATCTCT+CGG | 0.627630 | 1_2:-51000979 | Msa0075570:CDS |
AGTAATTAGTCAAAGCCTAG+AGG | 0.635942 | 1_2:-51001202 | Msa0075570:CDS |
TGCCCCACATGGACATCCTG+AGG | 0.640571 | 1_2:+51002859 | None:intergenic |
ATCCTCAGGATGTCCATGTG+GGG | 0.681917 | 1_2:-51002861 | Msa0075570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_2:51001593-51001612 | Msa0075570:intron | 10.0% |
!!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_2:51001982-51002001 | None:intergenic | 10.0% |
!!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_2:51001982-51002001 | None:intergenic | 10.0% |
!!! | AAATATATCATTTTAATTTG+GGG | + | chr1_2:51002162-51002181 | None:intergenic | 10.0% |
!!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_2:51001593-51001612 | Msa0075570:intron | 10.0% |
!!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_2:51001982-51002001 | None:intergenic | 10.0% |
!!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_2:51001982-51002001 | None:intergenic | 10.0% |
!!! | AAATATATCATTTTAATTTG+GGG | + | chr1_2:51002162-51002181 | None:intergenic | 10.0% |
!! | TTACTCCTTTAAATAAATAA+CGG | - | chr1_2:51002421-51002440 | Msa0075570:intron | 15.0% |
!! | TTACTCCTTTAAATAAATAA+CGG | - | chr1_2:51002421-51002440 | Msa0075570:intron | 15.0% |
!! | TGTGTTAAAATGTTAACTAT+AGG | + | chr1_2:51001276-51001295 | None:intergenic | 20.0% |
!! | CAAAAACTTCCTATATAAAA+AGG | - | chr1_2:51001457-51001476 | Msa0075570:intron | 20.0% |
!! | AAAATTGTGGAAAAAATTTC+TGG | + | chr1_2:51001528-51001547 | None:intergenic | 20.0% |
!! | AAAAAAGCAAAACAAAATTG+TGG | + | chr1_2:51001541-51001560 | None:intergenic | 20.0% |
!!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_2:51001642-51001661 | Msa0075570:intron | 20.0% |
!! | ATAATTTCACAAAAAAAAGG+AGG | + | chr1_2:51001880-51001899 | None:intergenic | 20.0% |
!!! | TCCTTTTTTTTGTGAAATTA+TGG | - | chr1_2:51001879-51001898 | Msa0075570:intron | 20.0% |
!! | ACCATAATTTCACAAAAAAA+AGG | + | chr1_2:51001883-51001902 | None:intergenic | 20.0% |
!!! | AAATATACCTTTTTGTATGA+AGG | + | chr1_2:51002245-51002264 | None:intergenic | 20.0% |
!!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_2:51002385-51002404 | None:intergenic | 20.0% |
!! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_2:51002429-51002448 | None:intergenic | 20.0% |
!! | TGTCATATTAATTGTTCATA+TGG | - | chr1_2:51002520-51002539 | Msa0075570:intron | 20.0% |
!! | GTCATATTAATTGTTCATAT+GGG | - | chr1_2:51002521-51002540 | Msa0075570:intron | 20.0% |
!! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_2:51002583-51002602 | None:intergenic | 20.0% |
!! | TAAAAGAATGTCATATGATT+TGG | - | chr1_2:51002843-51002862 | Msa0075570:CDS | 20.0% |
!! | AAAAGAATGTCATATGATTT+GGG | - | chr1_2:51002844-51002863 | Msa0075570:CDS | 20.0% |
!! | TGTGTTAAAATGTTAACTAT+AGG | + | chr1_2:51001276-51001295 | None:intergenic | 20.0% |
!! | CAAAAACTTCCTATATAAAA+AGG | - | chr1_2:51001457-51001476 | Msa0075570:intron | 20.0% |
!! | AAAATTGTGGAAAAAATTTC+TGG | + | chr1_2:51001528-51001547 | None:intergenic | 20.0% |
!! | AAAAAAGCAAAACAAAATTG+TGG | + | chr1_2:51001541-51001560 | None:intergenic | 20.0% |
!!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_2:51001642-51001661 | Msa0075570:intron | 20.0% |
!! | ATAATTTCACAAAAAAAAGG+AGG | + | chr1_2:51001880-51001899 | None:intergenic | 20.0% |
!!! | TCCTTTTTTTTGTGAAATTA+TGG | - | chr1_2:51001879-51001898 | Msa0075570:intron | 20.0% |
!! | ACCATAATTTCACAAAAAAA+AGG | + | chr1_2:51001883-51001902 | None:intergenic | 20.0% |
!!! | AAATATACCTTTTTGTATGA+AGG | + | chr1_2:51002245-51002264 | None:intergenic | 20.0% |
!!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_2:51002385-51002404 | None:intergenic | 20.0% |
!! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_2:51002429-51002448 | None:intergenic | 20.0% |
!! | TGTCATATTAATTGTTCATA+TGG | - | chr1_2:51002520-51002539 | Msa0075570:intron | 20.0% |
!! | GTCATATTAATTGTTCATAT+GGG | - | chr1_2:51002521-51002540 | Msa0075570:intron | 20.0% |
!! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_2:51002583-51002602 | None:intergenic | 20.0% |
!! | TAAAAGAATGTCATATGATT+TGG | - | chr1_2:51002843-51002862 | Msa0075570:CDS | 20.0% |
!! | AAAAGAATGTCATATGATTT+GGG | - | chr1_2:51002844-51002863 | Msa0075570:CDS | 20.0% |
!!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_2:51001238-51001257 | Msa0075570:CDS | 25.0% |
!! | AAACTGCAACCTTTTTATAT+AGG | + | chr1_2:51001469-51001488 | None:intergenic | 25.0% |
!!! | TTTCATTCAGTTGTTTTCAA+GGG | - | chr1_2:51001502-51001521 | Msa0075570:intron | 25.0% |
! | ACAAAAATCAAAGCAATAGA+GGG | + | chr1_2:51001850-51001869 | None:intergenic | 25.0% |
!! | CCATTTGATAAACAACTTTT+GGG | + | chr1_2:51001909-51001928 | None:intergenic | 25.0% |
!! | ACCATTTGATAAACAACTTT+TGG | + | chr1_2:51001910-51001929 | None:intergenic | 25.0% |
! | ACAATTTCCTTCATACAAAA+AGG | - | chr1_2:51002235-51002254 | Msa0075570:intron | 25.0% |
! | ATAAATAACGGTACATTGAT+TGG | - | chr1_2:51002433-51002452 | Msa0075570:intron | 25.0% |
! | AAATATATATTCAACGTTCG+CGG | + | chr1_2:51002498-51002517 | None:intergenic | 25.0% |
! | CTAATCAAAATACAAAAACG+GGG | + | chr1_2:51002581-51002600 | None:intergenic | 25.0% |
! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_2:51002582-51002601 | None:intergenic | 25.0% |
!!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_2:51001238-51001257 | Msa0075570:CDS | 25.0% |
!! | AAACTGCAACCTTTTTATAT+AGG | + | chr1_2:51001469-51001488 | None:intergenic | 25.0% |
!!! | TTTCATTCAGTTGTTTTCAA+GGG | - | chr1_2:51001502-51001521 | Msa0075570:intron | 25.0% |
! | ACAAAAATCAAAGCAATAGA+GGG | + | chr1_2:51001850-51001869 | None:intergenic | 25.0% |
!! | CCATTTGATAAACAACTTTT+GGG | + | chr1_2:51001909-51001928 | None:intergenic | 25.0% |
!! | ACCATTTGATAAACAACTTT+TGG | + | chr1_2:51001910-51001929 | None:intergenic | 25.0% |
! | ACAATTTCCTTCATACAAAA+AGG | - | chr1_2:51002235-51002254 | Msa0075570:intron | 25.0% |
! | ATAAATAACGGTACATTGAT+TGG | - | chr1_2:51002433-51002452 | Msa0075570:intron | 25.0% |
! | AAATATATATTCAACGTTCG+CGG | + | chr1_2:51002498-51002517 | None:intergenic | 25.0% |
! | CTAATCAAAATACAAAAACG+GGG | + | chr1_2:51002581-51002600 | None:intergenic | 25.0% |
! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_2:51002582-51002601 | None:intergenic | 25.0% |
! | ATTCAGAAGTACACTTTCTA+CGG | + | chr1_2:51001025-51001044 | None:intergenic | 30.0% |
! | GCAGCTATTCATAAAGTATT+TGG | - | chr1_2:51001092-51001111 | Msa0075570:CDS | 30.0% |
CGTATTATAGATCCTGTTTA+TGG | - | chr1_2:51001203-51001222 | Msa0075570:CDS | 30.0% | |
!! | CTTTCATTCAGTTGTTTTCA+AGG | - | chr1_2:51001501-51001520 | Msa0075570:intron | 30.0% |
TACCTATGTATACAACAACA+GGG | + | chr1_2:51001720-51001739 | None:intergenic | 30.0% | |
TTGTTGTATACATAGGTAGT+AGG | - | chr1_2:51001722-51001741 | Msa0075570:intron | 30.0% | |
TCACAAAAGTTGTCAAAAAG+TGG | + | chr1_2:51001787-51001806 | None:intergenic | 30.0% | |
CACAAAAATCAAAGCAATAG+AGG | + | chr1_2:51001851-51001870 | None:intergenic | 30.0% | |
! | TCACAAAAAAAAGGAGGTAT+TGG | + | chr1_2:51001874-51001893 | None:intergenic | 30.0% |
CCCAAAAGTTGTTTATCAAA+TGG | - | chr1_2:51001906-51001925 | Msa0075570:intron | 30.0% | |
!! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_2:51002540-51002559 | Msa0075570:intron | 30.0% |
!!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_2:51002579-51002598 | Msa0075570:intron | 30.0% |
TTCATATTTGTGGGACAAAA+TGG | + | chr1_2:51002730-51002749 | None:intergenic | 30.0% | |
GATATAGGGTTCATATTTGT+GGG | + | chr1_2:51002739-51002758 | None:intergenic | 30.0% | |
AGATATAGGGTTCATATTTG+TGG | + | chr1_2:51002740-51002759 | None:intergenic | 30.0% | |
GCTAAAATCAATTGAGTCAA+GGG | + | chr1_2:51002773-51002792 | None:intergenic | 30.0% | |
TGCTAAAATCAATTGAGTCA+AGG | + | chr1_2:51002774-51002793 | None:intergenic | 30.0% | |
! | TTCTTTTATGAGAGTAAGCT+TGG | + | chr1_2:51002831-51002850 | None:intergenic | 30.0% |
! | ATTCAGAAGTACACTTTCTA+CGG | + | chr1_2:51001025-51001044 | None:intergenic | 30.0% |
! | GCAGCTATTCATAAAGTATT+TGG | - | chr1_2:51001092-51001111 | Msa0075570:CDS | 30.0% |
CGTATTATAGATCCTGTTTA+TGG | - | chr1_2:51001203-51001222 | Msa0075570:CDS | 30.0% | |
!! | CTTTCATTCAGTTGTTTTCA+AGG | - | chr1_2:51001501-51001520 | Msa0075570:intron | 30.0% |
TACCTATGTATACAACAACA+GGG | + | chr1_2:51001720-51001739 | None:intergenic | 30.0% | |
TTGTTGTATACATAGGTAGT+AGG | - | chr1_2:51001722-51001741 | Msa0075570:intron | 30.0% | |
TCACAAAAGTTGTCAAAAAG+TGG | + | chr1_2:51001787-51001806 | None:intergenic | 30.0% | |
CACAAAAATCAAAGCAATAG+AGG | + | chr1_2:51001851-51001870 | None:intergenic | 30.0% | |
! | TCACAAAAAAAAGGAGGTAT+TGG | + | chr1_2:51001874-51001893 | None:intergenic | 30.0% |
CCCAAAAGTTGTTTATCAAA+TGG | - | chr1_2:51001906-51001925 | Msa0075570:intron | 30.0% | |
!! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_2:51002540-51002559 | Msa0075570:intron | 30.0% |
!!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_2:51002579-51002598 | Msa0075570:intron | 30.0% |
TTCATATTTGTGGGACAAAA+TGG | + | chr1_2:51002730-51002749 | None:intergenic | 30.0% | |
GATATAGGGTTCATATTTGT+GGG | + | chr1_2:51002739-51002758 | None:intergenic | 30.0% | |
AGATATAGGGTTCATATTTG+TGG | + | chr1_2:51002740-51002759 | None:intergenic | 30.0% | |
GCTAAAATCAATTGAGTCAA+GGG | + | chr1_2:51002773-51002792 | None:intergenic | 30.0% | |
TGCTAAAATCAATTGAGTCA+AGG | + | chr1_2:51002774-51002793 | None:intergenic | 30.0% | |
! | TTCTTTTATGAGAGTAAGCT+TGG | + | chr1_2:51002831-51002850 | None:intergenic | 30.0% |
AGGTAAATTCAGTAGCATCT+TGG | + | chr1_2:51001132-51001151 | None:intergenic | 35.0% | |
TTGAGCTTCATAAGCAATTG+CGG | + | chr1_2:51001180-51001199 | None:intergenic | 35.0% | |
TGTGATACACAACCATAAAC+AGG | + | chr1_2:51001218-51001237 | None:intergenic | 35.0% | |
CTACCTATGTATACAACAAC+AGG | + | chr1_2:51001721-51001740 | None:intergenic | 35.0% | |
GTATACATAGGTAGTAGGTT+TGG | - | chr1_2:51001727-51001746 | Msa0075570:intron | 35.0% | |
ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_2:51002130-51002149 | Msa0075570:intron | 35.0% | |
! | AATAACGGTACATTGATTGG+TGG | - | chr1_2:51002436-51002455 | Msa0075570:intron | 35.0% |
!! | TACATTGATTGGTGGATTTG+CGG | - | chr1_2:51002444-51002463 | Msa0075570:intron | 35.0% |
AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_2:51002645-51002664 | Msa0075570:CDS | 35.0% | |
AGGTAAATTCAGTAGCATCT+TGG | + | chr1_2:51001132-51001151 | None:intergenic | 35.0% | |
TTGAGCTTCATAAGCAATTG+CGG | + | chr1_2:51001180-51001199 | None:intergenic | 35.0% | |
TGTGATACACAACCATAAAC+AGG | + | chr1_2:51001218-51001237 | None:intergenic | 35.0% | |
CTACCTATGTATACAACAAC+AGG | + | chr1_2:51001721-51001740 | None:intergenic | 35.0% | |
GTATACATAGGTAGTAGGTT+TGG | - | chr1_2:51001727-51001746 | Msa0075570:intron | 35.0% | |
ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_2:51002130-51002149 | Msa0075570:intron | 35.0% | |
! | AATAACGGTACATTGATTGG+TGG | - | chr1_2:51002436-51002455 | Msa0075570:intron | 35.0% |
!! | TACATTGATTGGTGGATTTG+CGG | - | chr1_2:51002444-51002463 | Msa0075570:intron | 35.0% |
AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_2:51002645-51002664 | Msa0075570:CDS | 35.0% | |
CCTTGCTCACAGGAAAAATA+AGG | + | chr1_2:51001059-51001078 | None:intergenic | 40.0% | |
!!! | CCTTATTTTTCCTGTGAGCA+AGG | - | chr1_2:51001056-51001075 | Msa0075570:CDS | 40.0% |
TGAATAGCTGCAAATCTTGC+AGG | + | chr1_2:51001083-51001102 | None:intergenic | 40.0% | |
CTCCCTGTTGTTGTATACAT+AGG | - | chr1_2:51001715-51001734 | Msa0075570:intron | 40.0% | |
ATCGACGAGTAAGAGTTGTT+TGG | - | chr1_2:51002102-51002121 | Msa0075570:intron | 40.0% | |
AGCACAACTAATGCAAGTGA+AGG | - | chr1_2:51002615-51002634 | Msa0075570:CDS | 40.0% | |
CAGAGAACTTGGAGAATCAA+TGG | - | chr1_2:51002671-51002690 | Msa0075570:CDS | 40.0% | |
AACTTGGAGAATCAATGGTC+AGG | - | chr1_2:51002676-51002695 | Msa0075570:CDS | 40.0% | |
ACTTGGAGAATCAATGGTCA+GGG | - | chr1_2:51002677-51002696 | Msa0075570:CDS | 40.0% | |
ATTCCGAGAGATGTTTCTTG+CGG | + | chr1_2:51002874-51002893 | None:intergenic | 40.0% | |
AGAAACATCTCTCGGAATGA+TGG | - | chr1_2:51002876-51002895 | Msa0075570:CDS | 40.0% | |
GAAACATCTCTCGGAATGAT+GGG | - | chr1_2:51002877-51002896 | Msa0075570:CDS | 40.0% | |
CCTTGCTCACAGGAAAAATA+AGG | + | chr1_2:51001059-51001078 | None:intergenic | 40.0% | |
!!! | CCTTATTTTTCCTGTGAGCA+AGG | - | chr1_2:51001056-51001075 | Msa0075570:CDS | 40.0% |
TGAATAGCTGCAAATCTTGC+AGG | + | chr1_2:51001083-51001102 | None:intergenic | 40.0% | |
CTCCCTGTTGTTGTATACAT+AGG | - | chr1_2:51001715-51001734 | Msa0075570:intron | 40.0% | |
ATCGACGAGTAAGAGTTGTT+TGG | - | chr1_2:51002102-51002121 | Msa0075570:intron | 40.0% | |
AGCACAACTAATGCAAGTGA+AGG | - | chr1_2:51002615-51002634 | Msa0075570:CDS | 40.0% | |
CAGAGAACTTGGAGAATCAA+TGG | - | chr1_2:51002671-51002690 | Msa0075570:CDS | 40.0% | |
AACTTGGAGAATCAATGGTC+AGG | - | chr1_2:51002676-51002695 | Msa0075570:CDS | 40.0% | |
ACTTGGAGAATCAATGGTCA+GGG | - | chr1_2:51002677-51002696 | Msa0075570:CDS | 40.0% | |
ATTCCGAGAGATGTTTCTTG+CGG | + | chr1_2:51002874-51002893 | None:intergenic | 40.0% | |
AGAAACATCTCTCGGAATGA+TGG | - | chr1_2:51002876-51002895 | Msa0075570:CDS | 40.0% | |
GAAACATCTCTCGGAATGAT+GGG | - | chr1_2:51002877-51002896 | Msa0075570:CDS | 40.0% | |
ATGGACATCCTGAGGATCTA+GGG | + | chr1_2:51000983-51001002 | None:intergenic | 45.0% | |
AGAAATTTGCATGCCCCACA+TGG | + | chr1_2:51001002-51001021 | None:intergenic | 45.0% | |
CGGCGCAAACGTGATATAAA+AGG | + | chr1_2:51002478-51002497 | None:intergenic | 45.0% | |
GGGAGCTCTTAGGAGATATA+GGG | + | chr1_2:51002753-51002772 | None:intergenic | 45.0% | |
AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_2:51002754-51002773 | None:intergenic | 45.0% | |
ATTGAGTCAAGGGAGCTCTT+AGG | + | chr1_2:51002763-51002782 | None:intergenic | 45.0% | |
ATGGACATCCTGAGGATCTA+GGG | + | chr1_2:51000983-51001002 | None:intergenic | 45.0% | |
AGAAATTTGCATGCCCCACA+TGG | + | chr1_2:51001002-51001021 | None:intergenic | 45.0% | |
CGGCGCAAACGTGATATAAA+AGG | + | chr1_2:51002478-51002497 | None:intergenic | 45.0% | |
GGGAGCTCTTAGGAGATATA+GGG | + | chr1_2:51002753-51002772 | None:intergenic | 45.0% | |
AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_2:51002754-51002773 | None:intergenic | 45.0% | |
ATTGAGTCAAGGGAGCTCTT+AGG | + | chr1_2:51002763-51002782 | None:intergenic | 45.0% | |
!!! | AAAATATATCATTTTAATTT+GGG | + | chr1_2:51002163-51002182 | None:intergenic | 5.0% |
!!! | AAAAATATATCATTTTAATT+TGG | + | chr1_2:51002164-51002183 | None:intergenic | 5.0% |
!!! | AAAATATATCATTTTAATTT+GGG | + | chr1_2:51002163-51002182 | None:intergenic | 5.0% |
!!! | AAAAATATATCATTTTAATT+TGG | + | chr1_2:51002164-51002183 | None:intergenic | 5.0% |
CATGGACATCCTGAGGATCT+AGG | + | chr1_2:51000984-51001003 | None:intergenic | 50.0% | |
AGATCCTCAGGATGTCCATG+TGG | - | chr1_2:51000984-51001003 | Msa0075570:CDS | 50.0% | |
GATCCTCAGGATGTCCATGT+GGG | - | chr1_2:51000985-51001004 | Msa0075570:CDS | 50.0% | |
ATCCTCAGGATGTCCATGTG+GGG | - | chr1_2:51000986-51001005 | Msa0075570:CDS | 50.0% | |
AGCAATTGCGGCAACAGCAT+CGG | + | chr1_2:51001168-51001187 | None:intergenic | 50.0% | |
CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_2:51002663-51002682 | None:intergenic | 50.0% | |
CCTAGAGGAGACAGAGAACT+TGG | - | chr1_2:51002660-51002679 | Msa0075570:CDS | 50.0% | |
GAGCCGCAAGAAACATCTCT+CGG | - | chr1_2:51002868-51002887 | Msa0075570:CDS | 50.0% | |
CATGGACATCCTGAGGATCT+AGG | + | chr1_2:51000984-51001003 | None:intergenic | 50.0% | |
AGATCCTCAGGATGTCCATG+TGG | - | chr1_2:51000984-51001003 | Msa0075570:CDS | 50.0% | |
GATCCTCAGGATGTCCATGT+GGG | - | chr1_2:51000985-51001004 | Msa0075570:CDS | 50.0% | |
ATCCTCAGGATGTCCATGTG+GGG | - | chr1_2:51000986-51001005 | Msa0075570:CDS | 50.0% | |
AGCAATTGCGGCAACAGCAT+CGG | + | chr1_2:51001168-51001187 | None:intergenic | 50.0% | |
CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_2:51002663-51002682 | None:intergenic | 50.0% | |
CCTAGAGGAGACAGAGAACT+TGG | - | chr1_2:51002660-51002679 | Msa0075570:CDS | 50.0% | |
GAGCCGCAAGAAACATCTCT+CGG | - | chr1_2:51002868-51002887 | Msa0075570:CDS | 50.0% | |
TCTTGCAGGTCCTTGCTCAC+AGG | + | chr1_2:51001069-51001088 | None:intergenic | 55.0% | |
GCAATTGCGGCAACAGCATC+GGG | + | chr1_2:51001167-51001186 | None:intergenic | 55.0% | |
TCTTGCAGGTCCTTGCTCAC+AGG | + | chr1_2:51001069-51001088 | None:intergenic | 55.0% | |
GCAATTGCGGCAACAGCATC+GGG | + | chr1_2:51001167-51001186 | None:intergenic | 55.0% | |
! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_2:51000972-51000991 | Msa0075570:CDS | 60.0% |
TGCCCCACATGGACATCCTG+AGG | + | chr1_2:51000991-51001010 | None:intergenic | 60.0% | |
GCATCGGGACGATCATGAGC+AGG | + | chr1_2:51001152-51001171 | None:intergenic | 60.0% | |
! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_2:51000972-51000991 | Msa0075570:CDS | 60.0% |
TGCCCCACATGGACATCCTG+AGG | + | chr1_2:51000991-51001010 | None:intergenic | 60.0% | |
GCATCGGGACGATCATGAGC+AGG | + | chr1_2:51001152-51001171 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 51000957 | 51002912 | 51000957 | ID=Msa0075570;Name=Msa0075570 |
chr1_2 | mRNA | 51000957 | 51002912 | 51000957 | ID=Msa0075570-mRNA-1;Parent=Msa0075570;Name=Msa0075570-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|204 |
chr1_2 | exon | 51002610 | 51002912 | 51002610 | ID=Msa0075570-mRNA-1:exon:15719;Parent=Msa0075570-mRNA-1 |
chr1_2 | exon | 51000957 | 51001268 | 51000957 | ID=Msa0075570-mRNA-1:exon:15718;Parent=Msa0075570-mRNA-1 |
chr1_2 | CDS | 51002610 | 51002912 | 51002610 | ID=Msa0075570-mRNA-1:cds;Parent=Msa0075570-mRNA-1 |
chr1_2 | CDS | 51000957 | 51001268 | 51000957 | ID=Msa0075570-mRNA-1:cds;Parent=Msa0075570-mRNA-1 |
Gene Sequence |
Protein sequence |