AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075570 MtrunA17_Chr1g0184281 89.855 207 18 3 1 204 1 207 7.96e-135 376
Msa0075570 MtrunA17_Chr7g0260971 59.009 222 67 6 1 202 1 218 1.36e-77 231
Msa0075570 MtrunA17_Chr7g0261031 55.414 157 60 2 12 168 5 151 9.40e-49 158
Msa0075570 MtrunA17_Chr8g0351721 63.248 117 43 0 6 122 9 125 2.48e-48 157
Msa0075570 MtrunA17_Chr1g0184271 70.297 101 30 0 15 115 12 112 6.64e-48 156
Msa0075570 MtrunA17_Chr6g0460951 68.317 101 32 0 15 115 40 140 5.48e-46 151
Msa0075570 MtrunA17_Chr8g0351701 71.579 95 27 0 15 109 23 117 6.73e-46 151
Msa0075570 MtrunA17_Chr7g0245871 66.316 95 32 0 15 109 27 121 1.08e-42 143
Msa0075570 MtrunA17_Chr5g0435641 62.887 97 36 0 13 109 5 101 2.74e-42 140
Msa0075570 MtrunA17_Chr2g0311601 54.867 113 50 1 5 117 3 114 7.22e-41 136
Msa0075570 MtrunA17_Chr4g0043421 52.991 117 54 1 1 117 1 116 2.27e-40 135
Msa0075570 MtrunA17_Chr7g0245861 67.742 93 28 2 12 102 9 101 4.03e-38 128
Msa0075570 MtrunA17_Chr3g0106101 48.837 129 65 1 11 139 3 130 4.93e-38 129
Msa0075570 MtrunA17_Chr5g0437571 59.406 101 40 1 15 115 6 105 5.29e-38 129
Msa0075570 MtrunA17_Chr7g0227511 54.545 121 54 1 7 127 3 122 5.85e-38 129
Msa0075570 MtrunA17_Chr6g0449641 47.917 144 58 4 12 150 6 137 1.16e-36 125
Msa0075570 MtrunA17_Chr3g0114061 58.416 101 41 1 15 115 8 107 3.59e-36 124
Msa0075570 MtrunA17_Chr3g0097221 59.048 105 42 1 11 115 3 106 6.20e-36 127
Msa0075570 MtrunA17_Chr4g0058651 62.105 95 35 1 15 109 11 104 7.71e-36 124
Msa0075570 MtrunA17_Chr3g0117121 57.407 108 45 1 7 114 2 108 1.30e-35 124
Msa0075570 MtrunA17_Chr5g0402611 58.095 105 43 1 11 115 4 107 2.59e-35 126
Msa0075570 MtrunA17_Chr5g0438091 53.465 101 46 1 15 115 39 138 2.28e-34 120
Msa0075570 MtrunA17_Chr6g0449651 54.717 106 47 1 12 117 64 168 2.75e-34 120
Msa0075570 MtrunA17_Chr6g0460941 62.500 88 33 0 15 102 7 94 2.94e-34 117
Msa0075570 MtrunA17_Chr3g0129071 52.727 110 50 2 15 124 47 154 9.63e-34 120
Msa0075570 MtrunA17_Chr3g0113891 50.442 113 54 2 1 113 1 111 1.51e-33 118
Msa0075570 MtrunA17_Chr3g0115431 57.426 101 42 1 15 115 9 108 1.95e-33 119
Msa0075570 MtrunA17_Chr5g0437401 50.909 110 52 2 6 115 3 110 1.68e-32 115
Msa0075570 MtrunA17_Chr4g0030001 48.000 125 62 3 2 125 11 133 6.48e-32 114
Msa0075570 MtrunA17_Chr8g0353981 61.176 85 32 1 11 95 3 86 4.74e-31 113
Msa0075570 MtrunA17_Chr5g0432451 51.261 119 57 1 15 133 43 160 2.89e-30 111
Msa0075570 MtrunA17_Chr1g0200201 51.961 102 48 1 16 117 73 173 3.42e-30 110
Msa0075570 MtrunA17_Chr5g0444351 48.000 100 51 1 16 115 6 104 1.09e-27 102
Msa0075570 MtrunA17_Chr7g0225111 46.000 100 53 1 16 115 6 104 4.31e-27 99.8
Msa0075570 MtrunA17_Chr8g0374601 45.455 99 53 1 15 113 26 123 7.54e-23 92.8
Msa0075570 MtrunA17_Chr8g0374591 40.594 101 59 1 15 115 8 107 4.67e-21 84.7
Msa0075570 MtrunA17_Chr4g0059901 42.718 103 58 1 16 118 11 112 4.01e-20 85.5
Msa0075570 MtrunA17_Chr2g0330201 39.000 100 60 1 16 115 20 118 3.38e-19 83.6
Msa0075570 MtrunA17_Chr6g0452691 45.679 81 42 2 16 95 10 89 1.37e-18 79.7
Msa0075570 MtrunA17_Chr6g0452671 38.776 98 59 1 16 113 12 108 3.12e-18 79.0
Msa0075570 MtrunA17_Chr4g0040831 37.273 110 58 2 16 115 16 124 9.17e-17 75.1
Msa0075570 MtrunA17_Chr6g0452661 36.364 99 61 2 16 113 10 107 9.19e-17 76.3
Msa0075570 MtrunA17_Chr8g0374581 37.500 104 63 2 15 117 8 110 1.03e-16 75.5
Msa0075570 MtrunA17_Chr8g0342351 37.864 103 63 1 16 118 13 114 2.73e-16 75.1
Msa0075570 MtrunA17_Chr4g0055441 38.542 96 53 4 16 106 3 97 3.74e-14 67.0
Msa0075570 MtrunA17_Chr5g0439111 33.043 115 75 2 16 129 10 123 1.99e-13 66.6
Msa0075570 MtrunA17_Chr2g0326041 48.148 54 27 1 8 61 26 78 7.27e-13 62.0
Msa0075570 MtrunA17_Chr4g0046201 30.682 88 60 1 16 103 7 93 2.73e-11 61.2
Msa0075570 MtrunA17_Chr2g0326051 51.852 54 26 0 64 117 8 61 4.52e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075570 AT2G42430.1 47.581 248 81 7 1 202 1 245 1.04e-62 195
Msa0075570 AT3G58190.1 60.317 126 48 1 15 138 11 136 6.81e-48 156
Msa0075570 AT3G03760.1 68.868 106 33 0 15 120 51 156 9.13e-48 157
Msa0075570 AT2G42440.1 61.345 119 46 0 12 130 4 122 5.18e-47 155
Msa0075570 AT2G45420.1 71.429 98 28 0 18 115 40 137 6.32e-46 152
Msa0075570 AT4G00210.1 60.526 114 43 1 11 122 5 118 1.29e-45 150
Msa0075570 AT2G31310.1 63.107 103 38 0 13 115 5 107 1.25e-44 147
Msa0075570 AT2G45410.1 69.388 98 30 0 18 115 19 116 1.63e-44 147
Msa0075570 AT4G00220.1 67.347 98 32 0 18 115 20 117 3.15e-44 147
Msa0075570 AT5G06080.1 61.905 105 40 0 11 115 3 107 2.04e-43 144
Msa0075570 AT3G27650.1 60.000 100 39 1 15 114 39 137 2.11e-38 130
Msa0075570 AT5G63090.4 60.194 103 40 1 7 109 3 104 3.77e-36 125
Msa0075570 AT5G63090.3 60.194 103 40 1 7 109 3 104 3.77e-36 125
Msa0075570 AT5G63090.2 60.194 103 40 1 7 109 3 104 3.77e-36 125
Msa0075570 AT5G63090.1 60.194 103 40 1 7 109 3 104 3.77e-36 125
Msa0075570 AT2G30130.1 58.416 101 41 1 15 115 8 107 9.43e-36 124
Msa0075570 AT1G31320.1 55.208 96 42 1 7 102 5 99 2.76e-34 120
Msa0075570 AT1G07900.1 53.398 103 47 1 15 117 33 134 5.57e-34 120
Msa0075570 AT5G66870.1 55.238 105 46 1 11 115 3 106 2.13e-33 122
Msa0075570 AT2G30340.2 47.934 121 60 2 15 133 53 172 3.05e-33 120
Msa0075570 AT2G30340.1 47.934 121 60 2 15 133 52 171 3.65e-33 120
Msa0075570 AT1G16530.1 45.968 124 65 2 15 137 14 136 9.82e-33 116
Msa0075570 AT2G28500.1 48.696 115 57 2 15 129 55 167 1.02e-32 118
Msa0075570 AT2G23660.2 52.885 104 48 1 14 117 4 106 3.09e-32 118
Msa0075570 AT2G23660.3 52.885 104 48 1 14 117 4 106 3.09e-32 118
Msa0075570 AT2G23660.1 52.885 104 48 1 14 117 4 106 3.09e-32 118
Msa0075570 AT3G26660.1 44.248 113 61 2 16 127 6 117 1.73e-31 111
Msa0075570 AT3G11090.1 48.649 111 55 2 5 115 2 110 1.62e-30 110
Msa0075570 AT3G26620.1 44.340 106 58 1 16 121 6 110 1.81e-30 108
Msa0075570 AT1G65620.1 61.176 85 32 1 11 95 5 88 1.31e-29 108
Msa0075570 AT1G65620.4 61.176 85 32 1 11 95 5 88 1.31e-29 108
Msa0075570 AT1G65620.3 61.176 85 32 1 11 95 5 88 1.31e-29 108
Msa0075570 AT1G65620.5 61.176 85 32 1 11 95 5 88 1.31e-29 108
Msa0075570 AT1G65620.2 61.176 85 32 1 11 95 5 88 1.31e-29 108
Msa0075570 AT2G40470.2 52.632 114 53 1 15 128 20 132 3.08e-29 108
Msa0075570 AT2G40470.1 52.632 114 53 1 15 128 45 157 4.62e-29 108
Msa0075570 AT3G50510.1 46.465 99 52 1 15 113 12 109 2.22e-23 92.8
Msa0075570 AT3G50510.2 46.465 99 52 1 15 113 12 109 2.22e-23 92.8
Msa0075570 AT1G72980.1 35.000 120 77 1 12 131 10 128 1.79e-17 77.8
Msa0075570 AT5G35900.1 40.000 100 59 1 16 115 6 104 2.08e-17 77.4
Msa0075570 AT3G47870.1 35.000 100 64 1 16 115 37 135 1.34e-16 77.0
Msa0075570 AT3G13850.1 38.000 100 61 1 16 115 37 135 1.77e-16 75.9
Msa0075570 AT1G06280.1 45.570 79 34 2 16 90 25 98 6.72e-16 73.2

Find 42 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATTATAGATCCTGTTTA+TGG 0.144291 1_2:-51002644 Msa0075570:CDS
GCAGCTATTCATAAAGTATT+TGG 0.189937 1_2:-51002755 Msa0075570:CDS
TTCATATTTGTGGGACAAAA+TGG 0.226031 1_2:+51001120 None:intergenic
TAAAAGAATGTCATATGATT+TGG 0.245406 1_2:-51001004 Msa0075570:CDS
AATGATGGGAAACTATAATT+AGG 0.317238 1_2:-51000956 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.346463 1_2:+51002767 None:intergenic
CATGGACATCCTGAGGATCT+AGG 0.355593 1_2:+51002866 None:intergenic
AGGGAGCTCTTAGGAGATAT+AGG 0.377379 1_2:+51001096 None:intergenic
AAAAGAATGTCATATGATTT+GGG 0.393592 1_2:-51001003 Msa0075570:CDS
TGATTTATGGCTTCTACAAA+TGG 0.394946 1_2:-51002896 None:intergenic
GATATAGGGTTCATATTTGT+GGG 0.408424 1_2:+51001111 None:intergenic
CCTAGAGGAGACAGAGAACT+TGG 0.411652 1_2:-51001187 Msa0075570:CDS
ATTGAGTCAAGGGAGCTCTT+AGG 0.417545 1_2:+51001087 None:intergenic
CCAAGTTCTCTGTCTCCTCT+AGG 0.426551 1_2:+51001187 None:intergenic
AACTTGGAGAATCAATGGTC+AGG 0.427708 1_2:-51001171 Msa0075570:CDS
AGAAACATCTCTCGGAATGA+TGG 0.438279 1_2:-51000971 Msa0075570:CDS
GGCTCTAGCCCTAGATCCTC+AGG 0.441315 1_2:-51002875 Msa0075570:CDS
GCAATTGCGGCAACAGCATC+GGG 0.447204 1_2:+51002683 None:intergenic
AGATATAGGGTTCATATTTG+TGG 0.449622 1_2:+51001110 None:intergenic
GGGAGCTCTTAGGAGATATA+GGG 0.451691 1_2:+51001097 None:intergenic
TGTGATACACAACCATAAAC+AGG 0.455984 1_2:+51002632 None:intergenic
CAGAGAACTTGGAGAATCAA+TGG 0.493895 1_2:-51001176 Msa0075570:CDS
AGCAATTGCGGCAACAGCAT+CGG 0.501002 1_2:+51002682 None:intergenic
GAAACATCTCTCGGAATGAT+GGG 0.517494 1_2:-51000970 Msa0075570:CDS
ATGGACATCCTGAGGATCTA+GGG 0.518326 1_2:+51002867 None:intergenic
ATTCAGAAGTACACTTTCTA+CGG 0.522613 1_2:+51002825 None:intergenic
AGAAATTTGCATGCCCCACA+TGG 0.523694 1_2:+51002848 None:intergenic
GCTAAAATCAATTGAGTCAA+GGG 0.525535 1_2:+51001077 None:intergenic
TGCTAAAATCAATTGAGTCA+AGG 0.542231 1_2:+51001076 None:intergenic
TCTTGCAGGTCCTTGCTCAC+AGG 0.545761 1_2:+51002781 None:intergenic
ACTTGGAGAATCAATGGTCA+GGG 0.558166 1_2:-51001170 Msa0075570:CDS
AGGTAAATTCAGTAGCATCT+TGG 0.559995 1_2:+51002718 None:intergenic
ATTCCGAGAGATGTTTCTTG+CGG 0.572848 1_2:+51000976 None:intergenic
GCATCGGGACGATCATGAGC+AGG 0.573962 1_2:+51002698 None:intergenic
TTGAGCTTCATAAGCAATTG+CGG 0.600657 1_2:+51002670 None:intergenic
GATCCTCAGGATGTCCATGT+GGG 0.601232 1_2:-51002862 Msa0075570:CDS
AGATCCTCAGGATGTCCATG+TGG 0.614428 1_2:-51002863 Msa0075570:CDS
AGCACAACTAATGCAAGTGA+AGG 0.620211 1_2:-51001232 Msa0075570:CDS
GAGCCGCAAGAAACATCTCT+CGG 0.627630 1_2:-51000979 Msa0075570:CDS
AGTAATTAGTCAAAGCCTAG+AGG 0.635942 1_2:-51001202 Msa0075570:CDS
TGCCCCACATGGACATCCTG+AGG 0.640571 1_2:+51002859 None:intergenic
ATCCTCAGGATGTCCATGTG+GGG 0.681917 1_2:-51002861 Msa0075570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATATAACTTCTTTTTA+AGG - chr1_2:51001593-51001612 Msa0075570:intron 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1_2:51001982-51002001 None:intergenic 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1_2:51001982-51002001 None:intergenic 10.0%
!!! AAATATATCATTTTAATTTG+GGG + chr1_2:51002162-51002181 None:intergenic 10.0%
!!! TAATATATAACTTCTTTTTA+AGG - chr1_2:51001593-51001612 Msa0075570:intron 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1_2:51001982-51002001 None:intergenic 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1_2:51001982-51002001 None:intergenic 10.0%
!!! AAATATATCATTTTAATTTG+GGG + chr1_2:51002162-51002181 None:intergenic 10.0%
!! TTACTCCTTTAAATAAATAA+CGG - chr1_2:51002421-51002440 Msa0075570:intron 15.0%
!! TTACTCCTTTAAATAAATAA+CGG - chr1_2:51002421-51002440 Msa0075570:intron 15.0%
!! TGTGTTAAAATGTTAACTAT+AGG + chr1_2:51001276-51001295 None:intergenic 20.0%
!! CAAAAACTTCCTATATAAAA+AGG - chr1_2:51001457-51001476 Msa0075570:intron 20.0%
!! AAAATTGTGGAAAAAATTTC+TGG + chr1_2:51001528-51001547 None:intergenic 20.0%
!! AAAAAAGCAAAACAAAATTG+TGG + chr1_2:51001541-51001560 None:intergenic 20.0%
!!! ACATATATGTGTTCAAATTT+TGG - chr1_2:51001642-51001661 Msa0075570:intron 20.0%
!! ATAATTTCACAAAAAAAAGG+AGG + chr1_2:51001880-51001899 None:intergenic 20.0%
!!! TCCTTTTTTTTGTGAAATTA+TGG - chr1_2:51001879-51001898 Msa0075570:intron 20.0%
!! ACCATAATTTCACAAAAAAA+AGG + chr1_2:51001883-51001902 None:intergenic 20.0%
!!! AAATATACCTTTTTGTATGA+AGG + chr1_2:51002245-51002264 None:intergenic 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG + chr1_2:51002385-51002404 None:intergenic 20.0%
!! ATGTACCGTTATTTATTTAA+AGG + chr1_2:51002429-51002448 None:intergenic 20.0%
!! TGTCATATTAATTGTTCATA+TGG - chr1_2:51002520-51002539 Msa0075570:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG - chr1_2:51002521-51002540 Msa0075570:intron 20.0%
!! ACCTAATCAAAATACAAAAA+CGG + chr1_2:51002583-51002602 None:intergenic 20.0%
!! TAAAAGAATGTCATATGATT+TGG - chr1_2:51002843-51002862 Msa0075570:CDS 20.0%
!! AAAAGAATGTCATATGATTT+GGG - chr1_2:51002844-51002863 Msa0075570:CDS 20.0%
!! TGTGTTAAAATGTTAACTAT+AGG + chr1_2:51001276-51001295 None:intergenic 20.0%
!! CAAAAACTTCCTATATAAAA+AGG - chr1_2:51001457-51001476 Msa0075570:intron 20.0%
!! AAAATTGTGGAAAAAATTTC+TGG + chr1_2:51001528-51001547 None:intergenic 20.0%
!! AAAAAAGCAAAACAAAATTG+TGG + chr1_2:51001541-51001560 None:intergenic 20.0%
!!! ACATATATGTGTTCAAATTT+TGG - chr1_2:51001642-51001661 Msa0075570:intron 20.0%
!! ATAATTTCACAAAAAAAAGG+AGG + chr1_2:51001880-51001899 None:intergenic 20.0%
!!! TCCTTTTTTTTGTGAAATTA+TGG - chr1_2:51001879-51001898 Msa0075570:intron 20.0%
!! ACCATAATTTCACAAAAAAA+AGG + chr1_2:51001883-51001902 None:intergenic 20.0%
!!! AAATATACCTTTTTGTATGA+AGG + chr1_2:51002245-51002264 None:intergenic 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG + chr1_2:51002385-51002404 None:intergenic 20.0%
!! ATGTACCGTTATTTATTTAA+AGG + chr1_2:51002429-51002448 None:intergenic 20.0%
!! TGTCATATTAATTGTTCATA+TGG - chr1_2:51002520-51002539 Msa0075570:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG - chr1_2:51002521-51002540 Msa0075570:intron 20.0%
!! ACCTAATCAAAATACAAAAA+CGG + chr1_2:51002583-51002602 None:intergenic 20.0%
!! TAAAAGAATGTCATATGATT+TGG - chr1_2:51002843-51002862 Msa0075570:CDS 20.0%
!! AAAAGAATGTCATATGATTT+GGG - chr1_2:51002844-51002863 Msa0075570:CDS 20.0%
!!! TATTTTTGCTTTACAACAAC+AGG - chr1_2:51001238-51001257 Msa0075570:CDS 25.0%
!! AAACTGCAACCTTTTTATAT+AGG + chr1_2:51001469-51001488 None:intergenic 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG - chr1_2:51001502-51001521 Msa0075570:intron 25.0%
! ACAAAAATCAAAGCAATAGA+GGG + chr1_2:51001850-51001869 None:intergenic 25.0%
!! CCATTTGATAAACAACTTTT+GGG + chr1_2:51001909-51001928 None:intergenic 25.0%
!! ACCATTTGATAAACAACTTT+TGG + chr1_2:51001910-51001929 None:intergenic 25.0%
! ACAATTTCCTTCATACAAAA+AGG - chr1_2:51002235-51002254 Msa0075570:intron 25.0%
! ATAAATAACGGTACATTGAT+TGG - chr1_2:51002433-51002452 Msa0075570:intron 25.0%
! AAATATATATTCAACGTTCG+CGG + chr1_2:51002498-51002517 None:intergenic 25.0%
! CTAATCAAAATACAAAAACG+GGG + chr1_2:51002581-51002600 None:intergenic 25.0%
! CCTAATCAAAATACAAAAAC+GGG + chr1_2:51002582-51002601 None:intergenic 25.0%
!!! TATTTTTGCTTTACAACAAC+AGG - chr1_2:51001238-51001257 Msa0075570:CDS 25.0%
!! AAACTGCAACCTTTTTATAT+AGG + chr1_2:51001469-51001488 None:intergenic 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG - chr1_2:51001502-51001521 Msa0075570:intron 25.0%
! ACAAAAATCAAAGCAATAGA+GGG + chr1_2:51001850-51001869 None:intergenic 25.0%
!! CCATTTGATAAACAACTTTT+GGG + chr1_2:51001909-51001928 None:intergenic 25.0%
!! ACCATTTGATAAACAACTTT+TGG + chr1_2:51001910-51001929 None:intergenic 25.0%
! ACAATTTCCTTCATACAAAA+AGG - chr1_2:51002235-51002254 Msa0075570:intron 25.0%
! ATAAATAACGGTACATTGAT+TGG - chr1_2:51002433-51002452 Msa0075570:intron 25.0%
! AAATATATATTCAACGTTCG+CGG + chr1_2:51002498-51002517 None:intergenic 25.0%
! CTAATCAAAATACAAAAACG+GGG + chr1_2:51002581-51002600 None:intergenic 25.0%
! CCTAATCAAAATACAAAAAC+GGG + chr1_2:51002582-51002601 None:intergenic 25.0%
! ATTCAGAAGTACACTTTCTA+CGG + chr1_2:51001025-51001044 None:intergenic 30.0%
! GCAGCTATTCATAAAGTATT+TGG - chr1_2:51001092-51001111 Msa0075570:CDS 30.0%
CGTATTATAGATCCTGTTTA+TGG - chr1_2:51001203-51001222 Msa0075570:CDS 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG - chr1_2:51001501-51001520 Msa0075570:intron 30.0%
TACCTATGTATACAACAACA+GGG + chr1_2:51001720-51001739 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG - chr1_2:51001722-51001741 Msa0075570:intron 30.0%
TCACAAAAGTTGTCAAAAAG+TGG + chr1_2:51001787-51001806 None:intergenic 30.0%
CACAAAAATCAAAGCAATAG+AGG + chr1_2:51001851-51001870 None:intergenic 30.0%
! TCACAAAAAAAAGGAGGTAT+TGG + chr1_2:51001874-51001893 None:intergenic 30.0%
CCCAAAAGTTGTTTATCAAA+TGG - chr1_2:51001906-51001925 Msa0075570:intron 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG - chr1_2:51002540-51002559 Msa0075570:intron 30.0%
!!! CCCGTTTTTGTATTTTGATT+AGG - chr1_2:51002579-51002598 Msa0075570:intron 30.0%
TTCATATTTGTGGGACAAAA+TGG + chr1_2:51002730-51002749 None:intergenic 30.0%
GATATAGGGTTCATATTTGT+GGG + chr1_2:51002739-51002758 None:intergenic 30.0%
AGATATAGGGTTCATATTTG+TGG + chr1_2:51002740-51002759 None:intergenic 30.0%
GCTAAAATCAATTGAGTCAA+GGG + chr1_2:51002773-51002792 None:intergenic 30.0%
TGCTAAAATCAATTGAGTCA+AGG + chr1_2:51002774-51002793 None:intergenic 30.0%
! TTCTTTTATGAGAGTAAGCT+TGG + chr1_2:51002831-51002850 None:intergenic 30.0%
! ATTCAGAAGTACACTTTCTA+CGG + chr1_2:51001025-51001044 None:intergenic 30.0%
! GCAGCTATTCATAAAGTATT+TGG - chr1_2:51001092-51001111 Msa0075570:CDS 30.0%
CGTATTATAGATCCTGTTTA+TGG - chr1_2:51001203-51001222 Msa0075570:CDS 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG - chr1_2:51001501-51001520 Msa0075570:intron 30.0%
TACCTATGTATACAACAACA+GGG + chr1_2:51001720-51001739 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG - chr1_2:51001722-51001741 Msa0075570:intron 30.0%
TCACAAAAGTTGTCAAAAAG+TGG + chr1_2:51001787-51001806 None:intergenic 30.0%
CACAAAAATCAAAGCAATAG+AGG + chr1_2:51001851-51001870 None:intergenic 30.0%
! TCACAAAAAAAAGGAGGTAT+TGG + chr1_2:51001874-51001893 None:intergenic 30.0%
CCCAAAAGTTGTTTATCAAA+TGG - chr1_2:51001906-51001925 Msa0075570:intron 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG - chr1_2:51002540-51002559 Msa0075570:intron 30.0%
!!! CCCGTTTTTGTATTTTGATT+AGG - chr1_2:51002579-51002598 Msa0075570:intron 30.0%
TTCATATTTGTGGGACAAAA+TGG + chr1_2:51002730-51002749 None:intergenic 30.0%
GATATAGGGTTCATATTTGT+GGG + chr1_2:51002739-51002758 None:intergenic 30.0%
AGATATAGGGTTCATATTTG+TGG + chr1_2:51002740-51002759 None:intergenic 30.0%
GCTAAAATCAATTGAGTCAA+GGG + chr1_2:51002773-51002792 None:intergenic 30.0%
TGCTAAAATCAATTGAGTCA+AGG + chr1_2:51002774-51002793 None:intergenic 30.0%
! TTCTTTTATGAGAGTAAGCT+TGG + chr1_2:51002831-51002850 None:intergenic 30.0%
AGGTAAATTCAGTAGCATCT+TGG + chr1_2:51001132-51001151 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG + chr1_2:51001180-51001199 None:intergenic 35.0%
TGTGATACACAACCATAAAC+AGG + chr1_2:51001218-51001237 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG + chr1_2:51001721-51001740 None:intergenic 35.0%
GTATACATAGGTAGTAGGTT+TGG - chr1_2:51001727-51001746 Msa0075570:intron 35.0%
ATCGATCAGTAAGAGTTGTT+TGG - chr1_2:51002130-51002149 Msa0075570:intron 35.0%
! AATAACGGTACATTGATTGG+TGG - chr1_2:51002436-51002455 Msa0075570:intron 35.0%
!! TACATTGATTGGTGGATTTG+CGG - chr1_2:51002444-51002463 Msa0075570:intron 35.0%
AGTAATTAGTCAAAGCCTAG+AGG - chr1_2:51002645-51002664 Msa0075570:CDS 35.0%
AGGTAAATTCAGTAGCATCT+TGG + chr1_2:51001132-51001151 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG + chr1_2:51001180-51001199 None:intergenic 35.0%
TGTGATACACAACCATAAAC+AGG + chr1_2:51001218-51001237 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG + chr1_2:51001721-51001740 None:intergenic 35.0%
GTATACATAGGTAGTAGGTT+TGG - chr1_2:51001727-51001746 Msa0075570:intron 35.0%
ATCGATCAGTAAGAGTTGTT+TGG - chr1_2:51002130-51002149 Msa0075570:intron 35.0%
! AATAACGGTACATTGATTGG+TGG - chr1_2:51002436-51002455 Msa0075570:intron 35.0%
!! TACATTGATTGGTGGATTTG+CGG - chr1_2:51002444-51002463 Msa0075570:intron 35.0%
AGTAATTAGTCAAAGCCTAG+AGG - chr1_2:51002645-51002664 Msa0075570:CDS 35.0%
CCTTGCTCACAGGAAAAATA+AGG + chr1_2:51001059-51001078 None:intergenic 40.0%
!!! CCTTATTTTTCCTGTGAGCA+AGG - chr1_2:51001056-51001075 Msa0075570:CDS 40.0%
TGAATAGCTGCAAATCTTGC+AGG + chr1_2:51001083-51001102 None:intergenic 40.0%
CTCCCTGTTGTTGTATACAT+AGG - chr1_2:51001715-51001734 Msa0075570:intron 40.0%
ATCGACGAGTAAGAGTTGTT+TGG - chr1_2:51002102-51002121 Msa0075570:intron 40.0%
AGCACAACTAATGCAAGTGA+AGG - chr1_2:51002615-51002634 Msa0075570:CDS 40.0%
CAGAGAACTTGGAGAATCAA+TGG - chr1_2:51002671-51002690 Msa0075570:CDS 40.0%
AACTTGGAGAATCAATGGTC+AGG - chr1_2:51002676-51002695 Msa0075570:CDS 40.0%
ACTTGGAGAATCAATGGTCA+GGG - chr1_2:51002677-51002696 Msa0075570:CDS 40.0%
ATTCCGAGAGATGTTTCTTG+CGG + chr1_2:51002874-51002893 None:intergenic 40.0%
AGAAACATCTCTCGGAATGA+TGG - chr1_2:51002876-51002895 Msa0075570:CDS 40.0%
GAAACATCTCTCGGAATGAT+GGG - chr1_2:51002877-51002896 Msa0075570:CDS 40.0%
CCTTGCTCACAGGAAAAATA+AGG + chr1_2:51001059-51001078 None:intergenic 40.0%
!!! CCTTATTTTTCCTGTGAGCA+AGG - chr1_2:51001056-51001075 Msa0075570:CDS 40.0%
TGAATAGCTGCAAATCTTGC+AGG + chr1_2:51001083-51001102 None:intergenic 40.0%
CTCCCTGTTGTTGTATACAT+AGG - chr1_2:51001715-51001734 Msa0075570:intron 40.0%
ATCGACGAGTAAGAGTTGTT+TGG - chr1_2:51002102-51002121 Msa0075570:intron 40.0%
AGCACAACTAATGCAAGTGA+AGG - chr1_2:51002615-51002634 Msa0075570:CDS 40.0%
CAGAGAACTTGGAGAATCAA+TGG - chr1_2:51002671-51002690 Msa0075570:CDS 40.0%
AACTTGGAGAATCAATGGTC+AGG - chr1_2:51002676-51002695 Msa0075570:CDS 40.0%
ACTTGGAGAATCAATGGTCA+GGG - chr1_2:51002677-51002696 Msa0075570:CDS 40.0%
ATTCCGAGAGATGTTTCTTG+CGG + chr1_2:51002874-51002893 None:intergenic 40.0%
AGAAACATCTCTCGGAATGA+TGG - chr1_2:51002876-51002895 Msa0075570:CDS 40.0%
GAAACATCTCTCGGAATGAT+GGG - chr1_2:51002877-51002896 Msa0075570:CDS 40.0%
ATGGACATCCTGAGGATCTA+GGG + chr1_2:51000983-51001002 None:intergenic 45.0%
AGAAATTTGCATGCCCCACA+TGG + chr1_2:51001002-51001021 None:intergenic 45.0%
CGGCGCAAACGTGATATAAA+AGG + chr1_2:51002478-51002497 None:intergenic 45.0%
GGGAGCTCTTAGGAGATATA+GGG + chr1_2:51002753-51002772 None:intergenic 45.0%
AGGGAGCTCTTAGGAGATAT+AGG + chr1_2:51002754-51002773 None:intergenic 45.0%
ATTGAGTCAAGGGAGCTCTT+AGG + chr1_2:51002763-51002782 None:intergenic 45.0%
ATGGACATCCTGAGGATCTA+GGG + chr1_2:51000983-51001002 None:intergenic 45.0%
AGAAATTTGCATGCCCCACA+TGG + chr1_2:51001002-51001021 None:intergenic 45.0%
CGGCGCAAACGTGATATAAA+AGG + chr1_2:51002478-51002497 None:intergenic 45.0%
GGGAGCTCTTAGGAGATATA+GGG + chr1_2:51002753-51002772 None:intergenic 45.0%
AGGGAGCTCTTAGGAGATAT+AGG + chr1_2:51002754-51002773 None:intergenic 45.0%
ATTGAGTCAAGGGAGCTCTT+AGG + chr1_2:51002763-51002782 None:intergenic 45.0%
!!! AAAATATATCATTTTAATTT+GGG + chr1_2:51002163-51002182 None:intergenic 5.0%
!!! AAAAATATATCATTTTAATT+TGG + chr1_2:51002164-51002183 None:intergenic 5.0%
!!! AAAATATATCATTTTAATTT+GGG + chr1_2:51002163-51002182 None:intergenic 5.0%
!!! AAAAATATATCATTTTAATT+TGG + chr1_2:51002164-51002183 None:intergenic 5.0%
CATGGACATCCTGAGGATCT+AGG + chr1_2:51000984-51001003 None:intergenic 50.0%
AGATCCTCAGGATGTCCATG+TGG - chr1_2:51000984-51001003 Msa0075570:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG - chr1_2:51000985-51001004 Msa0075570:CDS 50.0%
ATCCTCAGGATGTCCATGTG+GGG - chr1_2:51000986-51001005 Msa0075570:CDS 50.0%
AGCAATTGCGGCAACAGCAT+CGG + chr1_2:51001168-51001187 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG + chr1_2:51002663-51002682 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG - chr1_2:51002660-51002679 Msa0075570:CDS 50.0%
GAGCCGCAAGAAACATCTCT+CGG - chr1_2:51002868-51002887 Msa0075570:CDS 50.0%
CATGGACATCCTGAGGATCT+AGG + chr1_2:51000984-51001003 None:intergenic 50.0%
AGATCCTCAGGATGTCCATG+TGG - chr1_2:51000984-51001003 Msa0075570:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG - chr1_2:51000985-51001004 Msa0075570:CDS 50.0%
ATCCTCAGGATGTCCATGTG+GGG - chr1_2:51000986-51001005 Msa0075570:CDS 50.0%
AGCAATTGCGGCAACAGCAT+CGG + chr1_2:51001168-51001187 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG + chr1_2:51002663-51002682 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG - chr1_2:51002660-51002679 Msa0075570:CDS 50.0%
GAGCCGCAAGAAACATCTCT+CGG - chr1_2:51002868-51002887 Msa0075570:CDS 50.0%
TCTTGCAGGTCCTTGCTCAC+AGG + chr1_2:51001069-51001088 None:intergenic 55.0%
GCAATTGCGGCAACAGCATC+GGG + chr1_2:51001167-51001186 None:intergenic 55.0%
TCTTGCAGGTCCTTGCTCAC+AGG + chr1_2:51001069-51001088 None:intergenic 55.0%
GCAATTGCGGCAACAGCATC+GGG + chr1_2:51001167-51001186 None:intergenic 55.0%
! GGCTCTAGCCCTAGATCCTC+AGG - chr1_2:51000972-51000991 Msa0075570:CDS 60.0%
TGCCCCACATGGACATCCTG+AGG + chr1_2:51000991-51001010 None:intergenic 60.0%
GCATCGGGACGATCATGAGC+AGG + chr1_2:51001152-51001171 None:intergenic 60.0%
! GGCTCTAGCCCTAGATCCTC+AGG - chr1_2:51000972-51000991 Msa0075570:CDS 60.0%
TGCCCCACATGGACATCCTG+AGG + chr1_2:51000991-51001010 None:intergenic 60.0%
GCATCGGGACGATCATGAGC+AGG + chr1_2:51001152-51001171 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51000957 51002912 51000957 ID=Msa0075570;Name=Msa0075570
chr1_2 mRNA 51000957 51002912 51000957 ID=Msa0075570-mRNA-1;Parent=Msa0075570;Name=Msa0075570-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|204
chr1_2 exon 51002610 51002912 51002610 ID=Msa0075570-mRNA-1:exon:15719;Parent=Msa0075570-mRNA-1
chr1_2 exon 51000957 51001268 51000957 ID=Msa0075570-mRNA-1:exon:15718;Parent=Msa0075570-mRNA-1
chr1_2 CDS 51002610 51002912 51002610 ID=Msa0075570-mRNA-1:cds;Parent=Msa0075570-mRNA-1
chr1_2 CDS 51000957 51001268 51000957 ID=Msa0075570-mRNA-1:cds;Parent=Msa0075570-mRNA-1
Gene Sequence

>Msa0075570

ATGGCTTCTACAAATGGCTCTAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTTCTCCGTAGAAAGTGTACTTCTGAATGCATATTTGCACCTTATTTTTCCTGTGAGCAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTATTTGGTGCTAGCAATGTTTCCAAGATGCTACTGAATTTACCTGCTCATGATCGTCCCGATGCTGTTGCCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTATCACATATTTTTGCTTTACAACAACAGGTAGCAAACTTGCAAGCACAACTAATGCAAGTGAAGGCACAACAAGTAATTAGTCAAAGCCTAGAGGAGACAGAGAACTTGGAGAATCAATGGTCAGGGAATGTTGTTAAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCCTATATCTCCTAAGAGCTCCCTTGACTCAATTGATTTTAGCAGCTGCAGCATCAATGATGTAATGAGTATACAATGCCAAGCTTACTCTCATAAAAGAATGTCATATGATTTGGGTGAGCCGCAAGAAACATCTCTCGGAATGATGGGAAACTATAATTAG

Protein sequence

>Msa0075570

MASTNGSSPRSSGCPCGACKFLRRKCTSECIFAPYFSCEQGPARFAAIHKVFGASNVSKMLLNLPAHDRPDAVAAIAYEAQARIIDPVYGCVSHIFALQQQVANLQAQLMQVKAQQVISQSLEETENLENQWSGNVVKQQLINPFCPTNMNPISPKSSLDSIDFSSCSINDVMSIQCQAYSHKRMSYDLGEPQETSLGMMGNYN*