AlfalfaGEDB | Msa0168000

M. sativa cultivar zhongmu-4 / Msa0168000

KEGG: K13944
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168000	XP_013468532.1	90.821	207	16	3	1	204	1	207	3.11e-133	382

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168000	sp\|Q9SLB7\|LBD16_ARATH	47.773	247	82	7	1	202	1	245	7.97e-63	198

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168000	A0A072VKM2	90.821	207	16	3	1	204	1	207	1.49e-133	382

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TFs/TRs:

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Gene ID	Type	Classification
Msa0168000	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075570	Msa0168000	0.803616	3.202708e-49	-8.615850e-47
Msa0123540	Msa0168000	0.898164	6.938024e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168000	MtrunA17_Chr1g0184281	90.821	207	16	3	1	204	1	207	2.86e-137	382
Msa0168000	MtrunA17_Chr7g0260971	59.009	222	67	6	1	202	1	218	6.13e-78	232
Msa0168000	MtrunA17_Chr7g0261031	55.414	157	60	2	12	168	5	151	7.90e-49	159
Msa0168000	MtrunA17_Chr8g0351721	63.248	117	43	0	6	122	9	125	1.85e-48	157
Msa0168000	MtrunA17_Chr1g0184271	70.297	101	30	0	15	115	12	112	5.52e-48	157
Msa0168000	MtrunA17_Chr6g0460951	68.317	101	32	0	15	115	40	140	4.23e-46	152
Msa0168000	MtrunA17_Chr8g0351701	67.327	101	33	0	15	115	23	123	4.56e-46	152
Msa0168000	MtrunA17_Chr7g0245871	66.316	95	32	0	15	109	27	121	8.36e-43	144
Msa0168000	MtrunA17_Chr5g0435641	62.887	97	36	0	13	109	5	101	2.25e-42	141
Msa0168000	MtrunA17_Chr2g0311601	54.867	113	50	1	5	117	3	114	6.62e-41	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168000	AT2G42430.1	47.773	247	82	7	1	202	1	245	8.10e-64	198
Msa0168000	AT3G58190.1	60.317	126	48	1	15	138	11	136	5.14e-48	157
Msa0168000	AT3G03760.1	68.868	106	33	0	15	120	51	156	9.13e-48	157
Msa0168000	AT2G42440.1	61.345	119	46	0	12	130	4	122	3.87e-47	155
Msa0168000	AT2G45420.1	71.429	98	28	0	18	115	40	137	4.93e-46	153
Msa0168000	AT4G00210.1	60.526	114	43	1	11	122	5	118	1.20e-45	150
Msa0168000	AT2G31310.1	63.107	103	38	0	13	115	5	107	1.12e-44	147
Msa0168000	AT2G45410.1	69.388	98	30	0	18	115	19	116	1.31e-44	147
Msa0168000	AT4G00220.1	67.347	98	32	0	18	115	20	117	2.00e-44	148
Msa0168000	AT5G06080.1	61.905	105	40	0	11	115	3	107	1.49e-43	144

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Find 39 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGTCATATGATTT+GGG	0.357241	1_4:+50244034	Msa0168000:CDS
AACTTGGAGAATCAATGGTC+AGG	0.427708	1_4:+50243866	Msa0168000:CDS
AATGATGGGAAACTATAATT+AGG	0.332280	1_4:+50244081	Msa0168000:CDS
ACTTGGAGAATCAATGGTCA+GGG	0.558166	1_4:+50243867	Msa0168000:CDS
AGAAACATCTCTCGGAATGA+TGG	0.438279	1_4:+50244066	Msa0168000:CDS
AGAAATTTGCATGCCCCACA+TGG	0.523694	1_4:-50242231	None:intergenic
AGATATAGGGTTCATATTTG+TGG	0.449622	1_4:-50243927	None:intergenic
AGATCCTCAGGATGTCCATG+TGG	0.614428	1_4:+50242216	Msa0168000:CDS
AGCAATTGCGGCAACAGCAT+CGG	0.501002	1_4:-50242397	None:intergenic
AGCACAACTAATGCAAGTGA+AGG	0.620211	1_4:+50243805	Msa0168000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTATTATAGATCCTGTTTA+TGG	+	chr1_4:50242435-50242454	Msa0168000:CDS	30.0%
TACCTATGTATACAACAACA+GGG	-	chr1_4:50242958-50242977	None:intergenic	30.0%
TTGTTGTATACATAGGTAGT+AGG	+	chr1_4:50242960-50242979	Msa0168000:intron	30.0%
CACAAAAATCAAAGCAATAG+AGG	-	chr1_4:50243089-50243108	None:intergenic	30.0%
CCCAAAAGTTGTTTATCAAA+TGG	+	chr1_4:50243144-50243163	Msa0168000:intron	30.0%
TTCATATTTGTGGGACAAAA+TGG	-	chr1_4:50243920-50243939	None:intergenic	30.0%
GATATAGGGTTCATATTTGT+GGG	-	chr1_4:50243929-50243948	None:intergenic	30.0%
AGATATAGGGTTCATATTTG+TGG	-	chr1_4:50243930-50243949	None:intergenic	30.0%
CGTATTATAGATCCTGTTTA+TGG	+	chr1_4:50242435-50242454	Msa0168000:CDS	30.0%
TACCTATGTATACAACAACA+GGG	-	chr1_4:50242958-50242977	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	50242189	50244102	50242189	ID=Msa0168000;Name=Msa0168000
chr1_4	mRNA	50242189	50244102	50242189	ID=Msa0168000-mRNA-1;Parent=Msa0168000;Name=Msa0168000-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0\|1\|0\|1\|1\|1\|2\|0\|204
chr1_4	exon	50242189	50242491	50242189	ID=Msa0168000-mRNA-1:exon:14792;Parent=Msa0168000-mRNA-1
chr1_4	exon	50243791	50244102	50243791	ID=Msa0168000-mRNA-1:exon:14793;Parent=Msa0168000-mRNA-1
chr1_4	CDS	50242189	50242491	50242189	ID=Msa0168000-mRNA-1:cds;Parent=Msa0168000-mRNA-1
chr1_4	CDS	50243791	50244102	50243791	ID=Msa0168000-mRNA-1:cds;Parent=Msa0168000-mRNA-1

Gene Sequence

>Msa0168000

ATGGCTTCTACAAATGGCTCTAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTTCTCCGTAGAAAGTGTACTTCTGAATGCATATTTGCACCTTATTTTTCCTGTGAACAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTATTTGGTGCTAGCAATGTTTCCAAGATGCTACTGAATTTACCTGCTCATGATCGTCCCGATGCTGTTGCCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTATCACATATTTTTGCTTTACAACAACAGGTAGCAAACTTGCAAGCACAACTAATGCAAGTGAAGGCACAACAAGTAATTAGTCAAAGCCTAGAGGAGACAGAGAACTTGGAGAATCAATGGTCAGGGAATGTTGTTAAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCCTATATCTCCTAAAAGCTCCCTTGATTCAATTGATTTTAGCAGCTGCAGCATCAATGATGTAATGAGTATACAATGCCAAGCTTACTCTAATAAAAGAATGTCATATGATTTGGGTGAGCGGCAAGAAACATCTCTCGGAATGATGGGAAACTATAATTAG

Protein sequence

>Msa0168000

MASTNGSSPRSSGCPCGACKFLRRKCTSECIFAPYFSCEQGPARFAAIHKVFGASNVSKMLLNLPAHDRPDAVAAIAYEAQARIIDPVYGCVSHIFALQQQVANLQAQLMQVKAQQVISQSLEETENLENQWSGNVVKQQLINPFCPTNMNPISPKSSLDSIDFSSCSINDVMSIQCQAYSNKRMSYDLGERQETSLGMMGNYN*