AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168000 MtrunA17_Chr1g0184281 90.821 207 16 3 1 204 1 207 2.86e-137 382
Msa0168000 MtrunA17_Chr7g0260971 59.009 222 67 6 1 202 1 218 6.13e-78 232
Msa0168000 MtrunA17_Chr7g0261031 55.414 157 60 2 12 168 5 151 7.90e-49 159
Msa0168000 MtrunA17_Chr8g0351721 63.248 117 43 0 6 122 9 125 1.85e-48 157
Msa0168000 MtrunA17_Chr1g0184271 70.297 101 30 0 15 115 12 112 5.52e-48 157
Msa0168000 MtrunA17_Chr6g0460951 68.317 101 32 0 15 115 40 140 4.23e-46 152
Msa0168000 MtrunA17_Chr8g0351701 67.327 101 33 0 15 115 23 123 4.56e-46 152
Msa0168000 MtrunA17_Chr7g0245871 66.316 95 32 0 15 109 27 121 8.36e-43 144
Msa0168000 MtrunA17_Chr5g0435641 62.887 97 36 0 13 109 5 101 2.25e-42 141
Msa0168000 MtrunA17_Chr2g0311601 54.867 113 50 1 5 117 3 114 6.62e-41 136
Msa0168000 MtrunA17_Chr4g0043421 52.991 117 54 1 1 117 1 116 2.06e-40 135
Msa0168000 MtrunA17_Chr7g0245861 67.742 93 28 2 12 102 9 101 3.00e-38 129
Msa0168000 MtrunA17_Chr3g0106101 48.837 129 65 1 11 139 3 130 3.53e-38 130
Msa0168000 MtrunA17_Chr5g0437571 59.406 101 40 1 15 115 6 105 4.80e-38 129
Msa0168000 MtrunA17_Chr7g0227511 54.545 121 54 1 7 127 3 122 5.36e-38 129
Msa0168000 MtrunA17_Chr6g0449641 47.917 144 58 4 12 150 6 137 1.03e-36 125
Msa0168000 MtrunA17_Chr3g0114061 53.509 114 52 1 15 128 8 120 2.51e-36 124
Msa0168000 MtrunA17_Chr4g0058651 62.105 95 35 1 15 109 11 104 6.92e-36 124
Msa0168000 MtrunA17_Chr3g0097221 59.048 105 42 1 11 115 3 106 7.75e-36 127
Msa0168000 MtrunA17_Chr3g0117121 57.407 108 45 1 7 114 2 108 1.06e-35 124
Msa0168000 MtrunA17_Chr5g0402611 58.095 105 43 1 11 115 4 107 2.62e-35 126
Msa0168000 MtrunA17_Chr5g0438091 53.465 101 46 1 15 115 39 138 2.21e-34 120
Msa0168000 MtrunA17_Chr6g0449651 54.717 106 47 1 12 117 64 168 2.44e-34 120
Msa0168000 MtrunA17_Chr6g0460941 62.500 88 33 0 15 102 7 94 3.28e-34 117
Msa0168000 MtrunA17_Chr3g0129071 52.727 110 50 2 15 124 47 154 8.66e-34 120
Msa0168000 MtrunA17_Chr3g0113891 50.442 113 54 2 1 113 1 111 1.24e-33 118
Msa0168000 MtrunA17_Chr3g0115431 57.426 101 42 1 15 115 9 108 1.83e-33 119
Msa0168000 MtrunA17_Chr5g0437401 51.852 108 50 2 6 113 3 108 1.77e-32 115
Msa0168000 MtrunA17_Chr4g0030001 48.000 125 62 3 2 125 11 133 6.14e-32 114
Msa0168000 MtrunA17_Chr8g0353981 61.446 83 31 1 11 93 3 84 3.06e-31 113
Msa0168000 MtrunA17_Chr5g0432451 51.261 119 57 1 15 133 43 160 2.54e-30 111
Msa0168000 MtrunA17_Chr1g0200201 51.961 102 48 1 16 117 73 173 3.14e-30 111
Msa0168000 MtrunA17_Chr5g0444351 48.000 100 51 1 16 115 6 104 1.13e-27 102
Msa0168000 MtrunA17_Chr7g0225111 46.000 100 53 1 16 115 6 104 3.40e-27 100
Msa0168000 MtrunA17_Chr8g0374601 45.455 99 53 1 15 113 26 123 6.93e-23 93.2
Msa0168000 MtrunA17_Chr8g0374591 41.414 99 57 1 15 113 8 105 3.98e-21 84.7
Msa0168000 MtrunA17_Chr4g0059901 42.718 103 58 1 16 118 11 112 3.73e-20 85.5
Msa0168000 MtrunA17_Chr2g0330201 39.000 100 60 1 16 115 20 118 2.84e-19 83.6
Msa0168000 MtrunA17_Chr6g0452691 45.679 81 42 2 16 95 10 89 1.26e-18 79.7
Msa0168000 MtrunA17_Chr6g0452671 38.776 98 59 1 16 113 12 108 3.22e-18 79.0
Msa0168000 MtrunA17_Chr6g0452661 36.364 99 61 2 16 113 10 107 9.29e-17 75.9
Msa0168000 MtrunA17_Chr4g0040831 37.273 110 58 2 16 115 16 124 1.02e-16 75.1
Msa0168000 MtrunA17_Chr8g0374581 33.333 144 77 5 15 152 8 138 1.04e-16 75.5
Msa0168000 MtrunA17_Chr8g0342351 37.864 103 63 1 16 118 13 114 2.85e-16 75.1
Msa0168000 MtrunA17_Chr4g0055441 38.542 96 53 4 16 106 3 97 3.55e-14 67.4
Msa0168000 MtrunA17_Chr5g0439111 33.043 115 75 2 16 129 10 123 1.87e-13 66.6
Msa0168000 MtrunA17_Chr2g0326041 48.148 54 27 1 8 61 26 78 6.83e-13 62.0
Msa0168000 MtrunA17_Chr4g0046201 30.682 88 60 1 16 103 7 93 2.92e-11 61.2
Msa0168000 MtrunA17_Chr2g0326051 51.852 54 26 0 64 117 8 61 4.81e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168000 AT2G42430.1 47.773 247 82 7 1 202 1 245 8.10e-64 198
Msa0168000 AT3G58190.1 60.317 126 48 1 15 138 11 136 5.14e-48 157
Msa0168000 AT3G03760.1 68.868 106 33 0 15 120 51 156 9.13e-48 157
Msa0168000 AT2G42440.1 61.345 119 46 0 12 130 4 122 3.87e-47 155
Msa0168000 AT2G45420.1 71.429 98 28 0 18 115 40 137 4.93e-46 153
Msa0168000 AT4G00210.1 60.526 114 43 1 11 122 5 118 1.20e-45 150
Msa0168000 AT2G31310.1 63.107 103 38 0 13 115 5 107 1.12e-44 147
Msa0168000 AT2G45410.1 69.388 98 30 0 18 115 19 116 1.31e-44 147
Msa0168000 AT4G00220.1 67.347 98 32 0 18 115 20 117 2.00e-44 148
Msa0168000 AT5G06080.1 61.905 105 40 0 11 115 3 107 1.49e-43 144
Msa0168000 AT3G27650.1 60.000 100 39 1 15 114 39 137 1.61e-38 130
Msa0168000 AT5G63090.4 60.194 103 40 1 7 109 3 104 3.57e-36 125
Msa0168000 AT5G63090.3 60.194 103 40 1 7 109 3 104 3.57e-36 125
Msa0168000 AT5G63090.2 60.194 103 40 1 7 109 3 104 3.57e-36 125
Msa0168000 AT5G63090.1 60.194 103 40 1 7 109 3 104 3.57e-36 125
Msa0168000 AT2G30130.1 58.416 101 41 1 15 115 8 107 7.68e-36 125
Msa0168000 AT1G31320.1 55.208 96 42 1 7 102 5 99 2.70e-34 120
Msa0168000 AT1G07900.1 53.398 103 47 1 15 117 33 134 4.69e-34 120
Msa0168000 AT5G66870.1 55.238 105 46 1 11 115 3 106 2.42e-33 121
Msa0168000 AT2G30340.2 47.934 121 60 2 15 133 53 172 2.92e-33 120
Msa0168000 AT2G30340.1 48.333 120 59 2 15 132 52 170 3.07e-33 120
Msa0168000 AT1G16530.1 45.968 124 65 2 15 137 14 136 6.38e-33 116
Msa0168000 AT2G28500.1 48.696 115 57 2 15 129 55 167 7.99e-33 118
Msa0168000 AT2G23660.2 52.885 104 48 1 14 117 4 106 2.51e-32 119
Msa0168000 AT2G23660.3 52.885 104 48 1 14 117 4 106 2.51e-32 119
Msa0168000 AT2G23660.1 52.885 104 48 1 14 117 4 106 2.51e-32 119
Msa0168000 AT3G26660.1 44.248 113 61 2 16 127 6 117 1.56e-31 111
Msa0168000 AT3G11090.1 51.429 105 49 2 5 109 2 104 1.46e-30 110
Msa0168000 AT3G26620.1 44.340 106 58 1 16 121 6 110 1.49e-30 108
Msa0168000 AT1G65620.1 61.176 85 32 1 11 95 5 88 1.09e-29 109
Msa0168000 AT1G65620.4 61.176 85 32 1 11 95 5 88 1.09e-29 109
Msa0168000 AT1G65620.3 61.176 85 32 1 11 95 5 88 1.09e-29 109
Msa0168000 AT1G65620.5 61.176 85 32 1 11 95 5 88 1.09e-29 109
Msa0168000 AT1G65620.2 61.176 85 32 1 11 95 5 88 1.09e-29 109
Msa0168000 AT2G40470.2 52.632 114 53 1 15 128 20 132 2.41e-29 108
Msa0168000 AT2G40470.1 52.632 114 53 1 15 128 45 157 4.57e-29 108
Msa0168000 AT3G50510.1 46.465 99 52 1 15 113 12 109 1.99e-23 93.2
Msa0168000 AT3G50510.2 46.465 99 52 1 15 113 12 109 1.99e-23 93.2
Msa0168000 AT1G72980.1 35.000 120 77 1 12 131 10 128 2.09e-17 77.4
Msa0168000 AT5G35900.1 40.000 100 59 1 16 115 6 104 2.39e-17 77.0
Msa0168000 AT3G47870.1 35.000 100 64 1 16 115 37 135 1.16e-16 77.0
Msa0168000 AT3G13850.1 38.000 100 61 1 16 115 37 135 1.72e-16 75.9
Msa0168000 AT1G06280.1 45.570 79 34 2 16 90 25 98 6.38e-16 73.2

Find 39 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATTATAGATCCTGTTTA+TGG 0.144291 1_4:+50242435 Msa0168000:CDS
GCAGCTATTCATAAAGTATT+TGG 0.189937 1_4:+50242324 Msa0168000:CDS
TTCATATTTGTGGGACAAAA+TGG 0.226031 1_4:-50243917 None:intergenic
TAAAAGAATGTCATATGATT+TGG 0.238586 1_4:+50244033 Msa0168000:CDS
AATGATGGGAAACTATAATT+AGG 0.332280 1_4:+50244081 Msa0168000:CDS
TGAATAGCTGCAAATCTTGC+AGG 0.346463 1_4:-50242312 None:intergenic
CATGGACATCCTGAGGATCT+AGG 0.355593 1_4:-50242213 None:intergenic
AAAAGAATGTCATATGATTT+GGG 0.357241 1_4:+50244034 Msa0168000:CDS
TGATTTATGGCTTCTACAAA+TGG 0.394946 1_4:+50242183 None:intergenic
GATATAGGGTTCATATTTGT+GGG 0.408424 1_4:-50243926 None:intergenic
CCTAGAGGAGACAGAGAACT+TGG 0.411652 1_4:+50243850 Msa0168000:CDS
CCAAGTTCTCTGTCTCCTCT+AGG 0.426551 1_4:-50243850 None:intergenic
AACTTGGAGAATCAATGGTC+AGG 0.427708 1_4:+50243866 Msa0168000:CDS
AGAAACATCTCTCGGAATGA+TGG 0.438279 1_4:+50244066 Msa0168000:CDS
GGCTCTAGCCCTAGATCCTC+AGG 0.441315 1_4:+50242204 Msa0168000:CDS
GCAATTGCGGCAACAGCATC+GGG 0.447204 1_4:-50242396 None:intergenic
AGATATAGGGTTCATATTTG+TGG 0.449622 1_4:-50243927 None:intergenic
TGTGATACACAACCATAAAC+AGG 0.455984 1_4:-50242447 None:intergenic
TGCTAAAATCAATTGAATCA+AGG 0.464352 1_4:-50243961 None:intergenic
CAGAGAACTTGGAGAATCAA+TGG 0.493895 1_4:+50243861 Msa0168000:CDS
GCTAAAATCAATTGAATCAA+GGG 0.496109 1_4:-50243960 None:intergenic
TCTTGCAGGTCCTTGTTCAC+AGG 0.500506 1_4:-50242298 None:intergenic
AGCAATTGCGGCAACAGCAT+CGG 0.501002 1_4:-50242397 None:intergenic
GAAACATCTCTCGGAATGAT+GGG 0.517494 1_4:+50244067 Msa0168000:CDS
ATGGACATCCTGAGGATCTA+GGG 0.518326 1_4:-50242212 None:intergenic
ATTCAGAAGTACACTTTCTA+CGG 0.522613 1_4:-50242254 None:intergenic
AGAAATTTGCATGCCCCACA+TGG 0.523694 1_4:-50242231 None:intergenic
ACTTGGAGAATCAATGGTCA+GGG 0.558166 1_4:+50243867 Msa0168000:CDS
AGGTAAATTCAGTAGCATCT+TGG 0.559995 1_4:-50242361 None:intergenic
GCATCGGGACGATCATGAGC+AGG 0.573962 1_4:-50242381 None:intergenic
TTGAGCTTCATAAGCAATTG+CGG 0.600657 1_4:-50242409 None:intergenic
GATCCTCAGGATGTCCATGT+GGG 0.601232 1_4:+50242217 Msa0168000:CDS
AGATCCTCAGGATGTCCATG+TGG 0.614428 1_4:+50242216 Msa0168000:CDS
AGCACAACTAATGCAAGTGA+AGG 0.620211 1_4:+50243805 Msa0168000:CDS
GAGCGGCAAGAAACATCTCT+CGG 0.627630 1_4:+50244058 Msa0168000:CDS
AGTAATTAGTCAAAGCCTAG+AGG 0.635942 1_4:+50243835 Msa0168000:CDS
TGCCCCACATGGACATCCTG+AGG 0.640571 1_4:-50242220 None:intergenic
TGTCATATGATTTGGGTGAG+CGG 0.650337 1_4:+50244041 Msa0168000:CDS
ATCCTCAGGATGTCCATGTG+GGG 0.681917 1_4:+50242218 Msa0168000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATATAACTTCTTTTTA+AGG + chr1_4:50242831-50242850 Msa0168000:intron 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG - chr1_4:50243220-50243239 None:intergenic 10.0%
!!! AAATATATCATTTTAATTTG+GGG - chr1_4:50243352-50243371 None:intergenic 10.0%
!!! TAATATATAACTTCTTTTTA+AGG + chr1_4:50242831-50242850 Msa0168000:intron 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG - chr1_4:50243220-50243239 None:intergenic 10.0%
!!! AAATATATCATTTTAATTTG+GGG - chr1_4:50243352-50243371 None:intergenic 10.0%
!! TTACTCCTTTAAATAAATAA+CGG + chr1_4:50243611-50243630 Msa0168000:intron 15.0%
!! TTACTCCTTTAAATAAATAA+CGG + chr1_4:50243611-50243630 Msa0168000:intron 15.0%
!! TGTGTTAAAATGTTAACTAT+AGG - chr1_4:50242508-50242527 None:intergenic 20.0%
!! CAAAAACTTCCTATATAAAA+AGG + chr1_4:50242689-50242708 Msa0168000:intron 20.0%
!! AAAATTGTGGAAAAAATTTC+TGG - chr1_4:50242766-50242785 None:intergenic 20.0%
!! AAAAAAGCAAAACAAAATTG+TGG - chr1_4:50242779-50242798 None:intergenic 20.0%
!!! ACATATATGTGTTCAAATTT+TGG + chr1_4:50242880-50242899 Msa0168000:intron 20.0%
!!! AAATATACCTTTTTGTATGA+AGG - chr1_4:50243435-50243454 None:intergenic 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG - chr1_4:50243575-50243594 None:intergenic 20.0%
!! ATGTACCGTTATTTATTTAA+AGG - chr1_4:50243619-50243638 None:intergenic 20.0%
!! TGTCATATTAATTGTTCATA+TGG + chr1_4:50243710-50243729 Msa0168000:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG + chr1_4:50243711-50243730 Msa0168000:intron 20.0%
!! ACCTAATCAAAATACAAAAA+CGG - chr1_4:50243773-50243792 None:intergenic 20.0%
!! TAAAAGAATGTCATATGATT+TGG + chr1_4:50244033-50244052 Msa0168000:CDS 20.0%
!! AAAAGAATGTCATATGATTT+GGG + chr1_4:50244034-50244053 Msa0168000:CDS 20.0%
!! TGTGTTAAAATGTTAACTAT+AGG - chr1_4:50242508-50242527 None:intergenic 20.0%
!! CAAAAACTTCCTATATAAAA+AGG + chr1_4:50242689-50242708 Msa0168000:intron 20.0%
!! AAAATTGTGGAAAAAATTTC+TGG - chr1_4:50242766-50242785 None:intergenic 20.0%
!! AAAAAAGCAAAACAAAATTG+TGG - chr1_4:50242779-50242798 None:intergenic 20.0%
!!! ACATATATGTGTTCAAATTT+TGG + chr1_4:50242880-50242899 Msa0168000:intron 20.0%
!!! AAATATACCTTTTTGTATGA+AGG - chr1_4:50243435-50243454 None:intergenic 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG - chr1_4:50243575-50243594 None:intergenic 20.0%
!! ATGTACCGTTATTTATTTAA+AGG - chr1_4:50243619-50243638 None:intergenic 20.0%
!! TGTCATATTAATTGTTCATA+TGG + chr1_4:50243710-50243729 Msa0168000:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG + chr1_4:50243711-50243730 Msa0168000:intron 20.0%
!! ACCTAATCAAAATACAAAAA+CGG - chr1_4:50243773-50243792 None:intergenic 20.0%
!! TAAAAGAATGTCATATGATT+TGG + chr1_4:50244033-50244052 Msa0168000:CDS 20.0%
!! AAAAGAATGTCATATGATTT+GGG + chr1_4:50244034-50244053 Msa0168000:CDS 20.0%
!!! TATTTTTGCTTTACAACAAC+AGG + chr1_4:50242470-50242489 Msa0168000:CDS 25.0%
!! AAACTGCAACCTTTTTATAT+AGG - chr1_4:50242701-50242720 None:intergenic 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG + chr1_4:50242740-50242759 Msa0168000:intron 25.0%
! ACAAAAATCAAAGCAATAGA+GGG - chr1_4:50243088-50243107 None:intergenic 25.0%
! ATAATTTCACAAAGAAAAGG+AGG - chr1_4:50243118-50243137 None:intergenic 25.0%
!! TCCTTTTCTTTGTGAAATTA+TGG + chr1_4:50243117-50243136 Msa0168000:intron 25.0%
! ACCATAATTTCACAAAGAAA+AGG - chr1_4:50243121-50243140 None:intergenic 25.0%
!! CCATTTGATAAACAACTTTT+GGG - chr1_4:50243147-50243166 None:intergenic 25.0%
!! ACCATTTGATAAACAACTTT+TGG - chr1_4:50243148-50243167 None:intergenic 25.0%
! ACAATTTCCTTCATACAAAA+AGG + chr1_4:50243425-50243444 Msa0168000:intron 25.0%
! ATAAATAACGGTACATTGAT+TGG + chr1_4:50243623-50243642 Msa0168000:intron 25.0%
! AAATATATATTCAACGTTCG+CGG - chr1_4:50243688-50243707 None:intergenic 25.0%
! CTAATCAAAATACAAAAACG+GGG - chr1_4:50243771-50243790 None:intergenic 25.0%
! CCTAATCAAAATACAAAAAC+GGG - chr1_4:50243772-50243791 None:intergenic 25.0%
! GCTAAAATCAATTGAATCAA+GGG - chr1_4:50243963-50243982 None:intergenic 25.0%
! TGCTAAAATCAATTGAATCA+AGG - chr1_4:50243964-50243983 None:intergenic 25.0%
!! TTCTTTTATTAGAGTAAGCT+TGG - chr1_4:50244021-50244040 None:intergenic 25.0%
!!! TATTTTTGCTTTACAACAAC+AGG + chr1_4:50242470-50242489 Msa0168000:CDS 25.0%
!! AAACTGCAACCTTTTTATAT+AGG - chr1_4:50242701-50242720 None:intergenic 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG + chr1_4:50242740-50242759 Msa0168000:intron 25.0%
! ACAAAAATCAAAGCAATAGA+GGG - chr1_4:50243088-50243107 None:intergenic 25.0%
! ATAATTTCACAAAGAAAAGG+AGG - chr1_4:50243118-50243137 None:intergenic 25.0%
!! TCCTTTTCTTTGTGAAATTA+TGG + chr1_4:50243117-50243136 Msa0168000:intron 25.0%
! ACCATAATTTCACAAAGAAA+AGG - chr1_4:50243121-50243140 None:intergenic 25.0%
!! CCATTTGATAAACAACTTTT+GGG - chr1_4:50243147-50243166 None:intergenic 25.0%
!! ACCATTTGATAAACAACTTT+TGG - chr1_4:50243148-50243167 None:intergenic 25.0%
! ACAATTTCCTTCATACAAAA+AGG + chr1_4:50243425-50243444 Msa0168000:intron 25.0%
! ATAAATAACGGTACATTGAT+TGG + chr1_4:50243623-50243642 Msa0168000:intron 25.0%
! AAATATATATTCAACGTTCG+CGG - chr1_4:50243688-50243707 None:intergenic 25.0%
! CTAATCAAAATACAAAAACG+GGG - chr1_4:50243771-50243790 None:intergenic 25.0%
! CCTAATCAAAATACAAAAAC+GGG - chr1_4:50243772-50243791 None:intergenic 25.0%
! GCTAAAATCAATTGAATCAA+GGG - chr1_4:50243963-50243982 None:intergenic 25.0%
! TGCTAAAATCAATTGAATCA+AGG - chr1_4:50243964-50243983 None:intergenic 25.0%
!! TTCTTTTATTAGAGTAAGCT+TGG - chr1_4:50244021-50244040 None:intergenic 25.0%
! ATTCAGAAGTACACTTTCTA+CGG - chr1_4:50242257-50242276 None:intergenic 30.0%
! GCAGCTATTCATAAAGTATT+TGG + chr1_4:50242324-50242343 Msa0168000:CDS 30.0%
CGTATTATAGATCCTGTTTA+TGG + chr1_4:50242435-50242454 Msa0168000:CDS 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG + chr1_4:50242739-50242758 Msa0168000:intron 30.0%
TACCTATGTATACAACAACA+GGG - chr1_4:50242958-50242977 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG + chr1_4:50242960-50242979 Msa0168000:intron 30.0%
CACAAAAATCAAAGCAATAG+AGG - chr1_4:50243089-50243108 None:intergenic 30.0%
CCCAAAAGTTGTTTATCAAA+TGG + chr1_4:50243144-50243163 Msa0168000:intron 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG + chr1_4:50243730-50243749 Msa0168000:intron 30.0%
!!! CCCGTTTTTGTATTTTGATT+AGG + chr1_4:50243769-50243788 Msa0168000:intron 30.0%
TTCATATTTGTGGGACAAAA+TGG - chr1_4:50243920-50243939 None:intergenic 30.0%
GATATAGGGTTCATATTTGT+GGG - chr1_4:50243929-50243948 None:intergenic 30.0%
AGATATAGGGTTCATATTTG+TGG - chr1_4:50243930-50243949 None:intergenic 30.0%
! ATTCAGAAGTACACTTTCTA+CGG - chr1_4:50242257-50242276 None:intergenic 30.0%
! GCAGCTATTCATAAAGTATT+TGG + chr1_4:50242324-50242343 Msa0168000:CDS 30.0%
CGTATTATAGATCCTGTTTA+TGG + chr1_4:50242435-50242454 Msa0168000:CDS 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG + chr1_4:50242739-50242758 Msa0168000:intron 30.0%
TACCTATGTATACAACAACA+GGG - chr1_4:50242958-50242977 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG + chr1_4:50242960-50242979 Msa0168000:intron 30.0%
CACAAAAATCAAAGCAATAG+AGG - chr1_4:50243089-50243108 None:intergenic 30.0%
CCCAAAAGTTGTTTATCAAA+TGG + chr1_4:50243144-50243163 Msa0168000:intron 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG + chr1_4:50243730-50243749 Msa0168000:intron 30.0%
!!! CCCGTTTTTGTATTTTGATT+AGG + chr1_4:50243769-50243788 Msa0168000:intron 30.0%
TTCATATTTGTGGGACAAAA+TGG - chr1_4:50243920-50243939 None:intergenic 30.0%
GATATAGGGTTCATATTTGT+GGG - chr1_4:50243929-50243948 None:intergenic 30.0%
AGATATAGGGTTCATATTTG+TGG - chr1_4:50243930-50243949 None:intergenic 30.0%
CCTTGTTCACAGGAAAAATA+AGG - chr1_4:50242291-50242310 None:intergenic 35.0%
!!! CCTTATTTTTCCTGTGAACA+AGG + chr1_4:50242288-50242307 Msa0168000:CDS 35.0%
AGGTAAATTCAGTAGCATCT+TGG - chr1_4:50242364-50242383 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG - chr1_4:50242412-50242431 None:intergenic 35.0%
TGTGATACACAACCATAAAC+AGG - chr1_4:50242450-50242469 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG - chr1_4:50242959-50242978 None:intergenic 35.0%
GTATACATAGGTAGTAGGTT+TGG + chr1_4:50242965-50242984 Msa0168000:intron 35.0%
! TCACAAAGAAAAGGAGGTAT+TGG - chr1_4:50243112-50243131 None:intergenic 35.0%
ATCGATCAGTAAGAGTTGTT+TGG + chr1_4:50243320-50243339 Msa0168000:intron 35.0%
! AATAACGGTACATTGATTGG+TGG + chr1_4:50243626-50243645 Msa0168000:intron 35.0%
!! TACATTGATTGGTGGATTTG+CGG + chr1_4:50243634-50243653 Msa0168000:intron 35.0%
AGTAATTAGTCAAAGCCTAG+AGG + chr1_4:50243835-50243854 Msa0168000:CDS 35.0%
! ATTGAATCAAGGGAGCTTTT+AGG - chr1_4:50243953-50243972 None:intergenic 35.0%
CCTTGTTCACAGGAAAAATA+AGG - chr1_4:50242291-50242310 None:intergenic 35.0%
!!! CCTTATTTTTCCTGTGAACA+AGG + chr1_4:50242288-50242307 Msa0168000:CDS 35.0%
AGGTAAATTCAGTAGCATCT+TGG - chr1_4:50242364-50242383 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG - chr1_4:50242412-50242431 None:intergenic 35.0%
TGTGATACACAACCATAAAC+AGG - chr1_4:50242450-50242469 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG - chr1_4:50242959-50242978 None:intergenic 35.0%
GTATACATAGGTAGTAGGTT+TGG + chr1_4:50242965-50242984 Msa0168000:intron 35.0%
! TCACAAAGAAAAGGAGGTAT+TGG - chr1_4:50243112-50243131 None:intergenic 35.0%
ATCGATCAGTAAGAGTTGTT+TGG + chr1_4:50243320-50243339 Msa0168000:intron 35.0%
! AATAACGGTACATTGATTGG+TGG + chr1_4:50243626-50243645 Msa0168000:intron 35.0%
!! TACATTGATTGGTGGATTTG+CGG + chr1_4:50243634-50243653 Msa0168000:intron 35.0%
AGTAATTAGTCAAAGCCTAG+AGG + chr1_4:50243835-50243854 Msa0168000:CDS 35.0%
! ATTGAATCAAGGGAGCTTTT+AGG - chr1_4:50243953-50243972 None:intergenic 35.0%
TGAATAGCTGCAAATCTTGC+AGG - chr1_4:50242315-50242334 None:intergenic 40.0%
CTCCCTGTTGTTGTATACAT+AGG + chr1_4:50242953-50242972 Msa0168000:intron 40.0%
ATCGACGAGTAAGAGTTGTT+TGG + chr1_4:50243292-50243311 Msa0168000:intron 40.0%
AGCACAACTAATGCAAGTGA+AGG + chr1_4:50243805-50243824 Msa0168000:CDS 40.0%
CAGAGAACTTGGAGAATCAA+TGG + chr1_4:50243861-50243880 Msa0168000:CDS 40.0%
AACTTGGAGAATCAATGGTC+AGG + chr1_4:50243866-50243885 Msa0168000:CDS 40.0%
ACTTGGAGAATCAATGGTCA+GGG + chr1_4:50243867-50243886 Msa0168000:CDS 40.0%
!! GGGAGCTTTTAGGAGATATA+GGG - chr1_4:50243943-50243962 None:intergenic 40.0%
!! AGGGAGCTTTTAGGAGATAT+AGG - chr1_4:50243944-50243963 None:intergenic 40.0%
! TGTCATATGATTTGGGTGAG+CGG + chr1_4:50244041-50244060 Msa0168000:CDS 40.0%
AGAAACATCTCTCGGAATGA+TGG + chr1_4:50244066-50244085 Msa0168000:CDS 40.0%
GAAACATCTCTCGGAATGAT+GGG + chr1_4:50244067-50244086 Msa0168000:CDS 40.0%
TGAATAGCTGCAAATCTTGC+AGG - chr1_4:50242315-50242334 None:intergenic 40.0%
CTCCCTGTTGTTGTATACAT+AGG + chr1_4:50242953-50242972 Msa0168000:intron 40.0%
ATCGACGAGTAAGAGTTGTT+TGG + chr1_4:50243292-50243311 Msa0168000:intron 40.0%
AGCACAACTAATGCAAGTGA+AGG + chr1_4:50243805-50243824 Msa0168000:CDS 40.0%
CAGAGAACTTGGAGAATCAA+TGG + chr1_4:50243861-50243880 Msa0168000:CDS 40.0%
AACTTGGAGAATCAATGGTC+AGG + chr1_4:50243866-50243885 Msa0168000:CDS 40.0%
ACTTGGAGAATCAATGGTCA+GGG + chr1_4:50243867-50243886 Msa0168000:CDS 40.0%
!! GGGAGCTTTTAGGAGATATA+GGG - chr1_4:50243943-50243962 None:intergenic 40.0%
!! AGGGAGCTTTTAGGAGATAT+AGG - chr1_4:50243944-50243963 None:intergenic 40.0%
! TGTCATATGATTTGGGTGAG+CGG + chr1_4:50244041-50244060 Msa0168000:CDS 40.0%
AGAAACATCTCTCGGAATGA+TGG + chr1_4:50244066-50244085 Msa0168000:CDS 40.0%
GAAACATCTCTCGGAATGAT+GGG + chr1_4:50244067-50244086 Msa0168000:CDS 40.0%
ATGGACATCCTGAGGATCTA+GGG - chr1_4:50242215-50242234 None:intergenic 45.0%
AGAAATTTGCATGCCCCACA+TGG - chr1_4:50242234-50242253 None:intergenic 45.0%
CGGCGCAAACGTGATATAAA+AGG - chr1_4:50243668-50243687 None:intergenic 45.0%
ATGGACATCCTGAGGATCTA+GGG - chr1_4:50242215-50242234 None:intergenic 45.0%
AGAAATTTGCATGCCCCACA+TGG - chr1_4:50242234-50242253 None:intergenic 45.0%
CGGCGCAAACGTGATATAAA+AGG - chr1_4:50243668-50243687 None:intergenic 45.0%
!!! AAAATATATCATTTTAATTT+GGG - chr1_4:50243353-50243372 None:intergenic 5.0%
!!! AAAAATATATCATTTTAATT+TGG - chr1_4:50243354-50243373 None:intergenic 5.0%
!!! AAAATATATCATTTTAATTT+GGG - chr1_4:50243353-50243372 None:intergenic 5.0%
!!! AAAAATATATCATTTTAATT+TGG - chr1_4:50243354-50243373 None:intergenic 5.0%
CATGGACATCCTGAGGATCT+AGG - chr1_4:50242216-50242235 None:intergenic 50.0%
AGATCCTCAGGATGTCCATG+TGG + chr1_4:50242216-50242235 Msa0168000:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG + chr1_4:50242217-50242236 Msa0168000:CDS 50.0%
ATCCTCAGGATGTCCATGTG+GGG + chr1_4:50242218-50242237 Msa0168000:CDS 50.0%
TCTTGCAGGTCCTTGTTCAC+AGG - chr1_4:50242301-50242320 None:intergenic 50.0%
AGCAATTGCGGCAACAGCAT+CGG - chr1_4:50242400-50242419 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG - chr1_4:50243853-50243872 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG + chr1_4:50243850-50243869 Msa0168000:CDS 50.0%
GAGCGGCAAGAAACATCTCT+CGG + chr1_4:50244058-50244077 Msa0168000:CDS 50.0%
CATGGACATCCTGAGGATCT+AGG - chr1_4:50242216-50242235 None:intergenic 50.0%
AGATCCTCAGGATGTCCATG+TGG + chr1_4:50242216-50242235 Msa0168000:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG + chr1_4:50242217-50242236 Msa0168000:CDS 50.0%
ATCCTCAGGATGTCCATGTG+GGG + chr1_4:50242218-50242237 Msa0168000:CDS 50.0%
TCTTGCAGGTCCTTGTTCAC+AGG - chr1_4:50242301-50242320 None:intergenic 50.0%
AGCAATTGCGGCAACAGCAT+CGG - chr1_4:50242400-50242419 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG - chr1_4:50243853-50243872 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG + chr1_4:50243850-50243869 Msa0168000:CDS 50.0%
GAGCGGCAAGAAACATCTCT+CGG + chr1_4:50244058-50244077 Msa0168000:CDS 50.0%
GCAATTGCGGCAACAGCATC+GGG - chr1_4:50242399-50242418 None:intergenic 55.0%
GCAATTGCGGCAACAGCATC+GGG - chr1_4:50242399-50242418 None:intergenic 55.0%
! GGCTCTAGCCCTAGATCCTC+AGG + chr1_4:50242204-50242223 Msa0168000:CDS 60.0%
TGCCCCACATGGACATCCTG+AGG - chr1_4:50242223-50242242 None:intergenic 60.0%
GCATCGGGACGATCATGAGC+AGG - chr1_4:50242384-50242403 None:intergenic 60.0%
! GGCTCTAGCCCTAGATCCTC+AGG + chr1_4:50242204-50242223 Msa0168000:CDS 60.0%
TGCCCCACATGGACATCCTG+AGG - chr1_4:50242223-50242242 None:intergenic 60.0%
GCATCGGGACGATCATGAGC+AGG - chr1_4:50242384-50242403 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50242189 50244102 50242189 ID=Msa0168000;Name=Msa0168000
chr1_4 mRNA 50242189 50244102 50242189 ID=Msa0168000-mRNA-1;Parent=Msa0168000;Name=Msa0168000-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|204
chr1_4 exon 50242189 50242491 50242189 ID=Msa0168000-mRNA-1:exon:14792;Parent=Msa0168000-mRNA-1
chr1_4 exon 50243791 50244102 50243791 ID=Msa0168000-mRNA-1:exon:14793;Parent=Msa0168000-mRNA-1
chr1_4 CDS 50242189 50242491 50242189 ID=Msa0168000-mRNA-1:cds;Parent=Msa0168000-mRNA-1
chr1_4 CDS 50243791 50244102 50243791 ID=Msa0168000-mRNA-1:cds;Parent=Msa0168000-mRNA-1
Gene Sequence

>Msa0168000

ATGGCTTCTACAAATGGCTCTAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTTCTCCGTAGAAAGTGTACTTCTGAATGCATATTTGCACCTTATTTTTCCTGTGAACAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTATTTGGTGCTAGCAATGTTTCCAAGATGCTACTGAATTTACCTGCTCATGATCGTCCCGATGCTGTTGCCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTATCACATATTTTTGCTTTACAACAACAGGTAGCAAACTTGCAAGCACAACTAATGCAAGTGAAGGCACAACAAGTAATTAGTCAAAGCCTAGAGGAGACAGAGAACTTGGAGAATCAATGGTCAGGGAATGTTGTTAAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCCTATATCTCCTAAAAGCTCCCTTGATTCAATTGATTTTAGCAGCTGCAGCATCAATGATGTAATGAGTATACAATGCCAAGCTTACTCTAATAAAAGAATGTCATATGATTTGGGTGAGCGGCAAGAAACATCTCTCGGAATGATGGGAAACTATAATTAG

Protein sequence

>Msa0168000

MASTNGSSPRSSGCPCGACKFLRRKCTSECIFAPYFSCEQGPARFAAIHKVFGASNVSKMLLNLPAHDRPDAVAAIAYEAQARIIDPVYGCVSHIFALQQQVANLQAQLMQVKAQQVISQSLEETENLENQWSGNVVKQQLINPFCPTNMNPISPKSSLDSIDFSSCSINDVMSIQCQAYSNKRMSYDLGERQETSLGMMGNYN*