Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123540 | XP_013468532.1 | 90.821 | 207 | 16 | 3 | 1 | 204 | 1 | 207 | 3.11e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123540 | sp|Q9SLB7|LBD16_ARATH | 47.773 | 247 | 82 | 7 | 1 | 202 | 1 | 245 | 7.97e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123540 | A0A072VKM2 | 90.821 | 207 | 16 | 3 | 1 | 204 | 1 | 207 | 1.49e-133 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0123540 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075570 | Msa0123540 | 0.814409 | 1.563547e-51 | -8.615850e-47 |
| Msa0123540 | Msa0168000 | 0.898164 | 6.938024e-77 | -8.615850e-47 |
| Msa0123540 | Msa0416040 | 0.809530 | 1.808358e-50 | -8.615850e-47 |
| Msa0123540 | Msa0705520 | 0.801193 | 1.010540e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123540 | MtrunA17_Chr1g0184281 | 90.821 | 207 | 16 | 3 | 1 | 204 | 1 | 207 | 2.86e-137 | 382 |
| Msa0123540 | MtrunA17_Chr7g0260971 | 59.009 | 222 | 67 | 6 | 1 | 202 | 1 | 218 | 6.13e-78 | 232 |
| Msa0123540 | MtrunA17_Chr7g0261031 | 55.414 | 157 | 60 | 2 | 12 | 168 | 5 | 151 | 7.90e-49 | 159 |
| Msa0123540 | MtrunA17_Chr8g0351721 | 63.248 | 117 | 43 | 0 | 6 | 122 | 9 | 125 | 1.85e-48 | 157 |
| Msa0123540 | MtrunA17_Chr1g0184271 | 70.297 | 101 | 30 | 0 | 15 | 115 | 12 | 112 | 5.52e-48 | 157 |
| Msa0123540 | MtrunA17_Chr6g0460951 | 68.317 | 101 | 32 | 0 | 15 | 115 | 40 | 140 | 4.23e-46 | 152 |
| Msa0123540 | MtrunA17_Chr8g0351701 | 67.327 | 101 | 33 | 0 | 15 | 115 | 23 | 123 | 4.56e-46 | 152 |
| Msa0123540 | MtrunA17_Chr7g0245871 | 66.316 | 95 | 32 | 0 | 15 | 109 | 27 | 121 | 8.36e-43 | 144 |
| Msa0123540 | MtrunA17_Chr5g0435641 | 62.887 | 97 | 36 | 0 | 13 | 109 | 5 | 101 | 2.25e-42 | 141 |
| Msa0123540 | MtrunA17_Chr2g0311601 | 54.867 | 113 | 50 | 1 | 5 | 117 | 3 | 114 | 6.62e-41 | 136 |
| Msa0123540 | MtrunA17_Chr4g0043421 | 52.991 | 117 | 54 | 1 | 1 | 117 | 1 | 116 | 2.06e-40 | 135 |
| Msa0123540 | MtrunA17_Chr7g0245861 | 67.742 | 93 | 28 | 2 | 12 | 102 | 9 | 101 | 3.00e-38 | 129 |
| Msa0123540 | MtrunA17_Chr3g0106101 | 48.837 | 129 | 65 | 1 | 11 | 139 | 3 | 130 | 3.53e-38 | 130 |
| Msa0123540 | MtrunA17_Chr5g0437571 | 59.406 | 101 | 40 | 1 | 15 | 115 | 6 | 105 | 4.80e-38 | 129 |
| Msa0123540 | MtrunA17_Chr7g0227511 | 54.545 | 121 | 54 | 1 | 7 | 127 | 3 | 122 | 5.36e-38 | 129 |
| Msa0123540 | MtrunA17_Chr6g0449641 | 47.917 | 144 | 58 | 4 | 12 | 150 | 6 | 137 | 1.03e-36 | 125 |
| Msa0123540 | MtrunA17_Chr3g0114061 | 53.509 | 114 | 52 | 1 | 15 | 128 | 8 | 120 | 2.51e-36 | 124 |
| Msa0123540 | MtrunA17_Chr4g0058651 | 62.105 | 95 | 35 | 1 | 15 | 109 | 11 | 104 | 6.92e-36 | 124 |
| Msa0123540 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 42 | 1 | 11 | 115 | 3 | 106 | 7.75e-36 | 127 |
| Msa0123540 | MtrunA17_Chr3g0117121 | 57.407 | 108 | 45 | 1 | 7 | 114 | 2 | 108 | 1.06e-35 | 124 |
| Msa0123540 | MtrunA17_Chr5g0402611 | 58.095 | 105 | 43 | 1 | 11 | 115 | 4 | 107 | 2.62e-35 | 126 |
| Msa0123540 | MtrunA17_Chr5g0438091 | 53.465 | 101 | 46 | 1 | 15 | 115 | 39 | 138 | 2.21e-34 | 120 |
| Msa0123540 | MtrunA17_Chr6g0449651 | 54.717 | 106 | 47 | 1 | 12 | 117 | 64 | 168 | 2.44e-34 | 120 |
| Msa0123540 | MtrunA17_Chr6g0460941 | 62.500 | 88 | 33 | 0 | 15 | 102 | 7 | 94 | 3.28e-34 | 117 |
| Msa0123540 | MtrunA17_Chr3g0129071 | 52.727 | 110 | 50 | 2 | 15 | 124 | 47 | 154 | 8.66e-34 | 120 |
| Msa0123540 | MtrunA17_Chr3g0113891 | 50.442 | 113 | 54 | 2 | 1 | 113 | 1 | 111 | 1.24e-33 | 118 |
| Msa0123540 | MtrunA17_Chr3g0115431 | 57.426 | 101 | 42 | 1 | 15 | 115 | 9 | 108 | 1.83e-33 | 119 |
| Msa0123540 | MtrunA17_Chr5g0437401 | 51.852 | 108 | 50 | 2 | 6 | 113 | 3 | 108 | 1.77e-32 | 115 |
| Msa0123540 | MtrunA17_Chr4g0030001 | 48.000 | 125 | 62 | 3 | 2 | 125 | 11 | 133 | 6.14e-32 | 114 |
| Msa0123540 | MtrunA17_Chr8g0353981 | 61.446 | 83 | 31 | 1 | 11 | 93 | 3 | 84 | 3.06e-31 | 113 |
| Msa0123540 | MtrunA17_Chr5g0432451 | 51.261 | 119 | 57 | 1 | 15 | 133 | 43 | 160 | 2.54e-30 | 111 |
| Msa0123540 | MtrunA17_Chr1g0200201 | 51.961 | 102 | 48 | 1 | 16 | 117 | 73 | 173 | 3.14e-30 | 111 |
| Msa0123540 | MtrunA17_Chr5g0444351 | 48.000 | 100 | 51 | 1 | 16 | 115 | 6 | 104 | 1.13e-27 | 102 |
| Msa0123540 | MtrunA17_Chr7g0225111 | 46.000 | 100 | 53 | 1 | 16 | 115 | 6 | 104 | 3.40e-27 | 100 |
| Msa0123540 | MtrunA17_Chr8g0374601 | 45.455 | 99 | 53 | 1 | 15 | 113 | 26 | 123 | 6.93e-23 | 93.2 |
| Msa0123540 | MtrunA17_Chr8g0374591 | 41.414 | 99 | 57 | 1 | 15 | 113 | 8 | 105 | 3.98e-21 | 84.7 |
| Msa0123540 | MtrunA17_Chr4g0059901 | 42.718 | 103 | 58 | 1 | 16 | 118 | 11 | 112 | 3.73e-20 | 85.5 |
| Msa0123540 | MtrunA17_Chr2g0330201 | 39.000 | 100 | 60 | 1 | 16 | 115 | 20 | 118 | 2.84e-19 | 83.6 |
| Msa0123540 | MtrunA17_Chr6g0452691 | 45.679 | 81 | 42 | 2 | 16 | 95 | 10 | 89 | 1.26e-18 | 79.7 |
| Msa0123540 | MtrunA17_Chr6g0452671 | 38.776 | 98 | 59 | 1 | 16 | 113 | 12 | 108 | 3.22e-18 | 79.0 |
| Msa0123540 | MtrunA17_Chr6g0452661 | 36.364 | 99 | 61 | 2 | 16 | 113 | 10 | 107 | 9.29e-17 | 75.9 |
| Msa0123540 | MtrunA17_Chr4g0040831 | 37.273 | 110 | 58 | 2 | 16 | 115 | 16 | 124 | 1.02e-16 | 75.1 |
| Msa0123540 | MtrunA17_Chr8g0374581 | 33.333 | 144 | 77 | 5 | 15 | 152 | 8 | 138 | 1.04e-16 | 75.5 |
| Msa0123540 | MtrunA17_Chr8g0342351 | 37.864 | 103 | 63 | 1 | 16 | 118 | 13 | 114 | 2.85e-16 | 75.1 |
| Msa0123540 | MtrunA17_Chr4g0055441 | 38.542 | 96 | 53 | 4 | 16 | 106 | 3 | 97 | 3.55e-14 | 67.4 |
| Msa0123540 | MtrunA17_Chr5g0439111 | 33.043 | 115 | 75 | 2 | 16 | 129 | 10 | 123 | 1.87e-13 | 66.6 |
| Msa0123540 | MtrunA17_Chr2g0326041 | 48.148 | 54 | 27 | 1 | 8 | 61 | 26 | 78 | 6.83e-13 | 62.0 |
| Msa0123540 | MtrunA17_Chr4g0046201 | 30.682 | 88 | 60 | 1 | 16 | 103 | 7 | 93 | 2.92e-11 | 61.2 |
| Msa0123540 | MtrunA17_Chr2g0326051 | 51.852 | 54 | 26 | 0 | 64 | 117 | 8 | 61 | 4.81e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123540 | AT2G42430.1 | 47.773 | 247 | 82 | 7 | 1 | 202 | 1 | 245 | 8.10e-64 | 198 |
| Msa0123540 | AT3G58190.1 | 60.317 | 126 | 48 | 1 | 15 | 138 | 11 | 136 | 5.14e-48 | 157 |
| Msa0123540 | AT3G03760.1 | 68.868 | 106 | 33 | 0 | 15 | 120 | 51 | 156 | 9.13e-48 | 157 |
| Msa0123540 | AT2G42440.1 | 61.345 | 119 | 46 | 0 | 12 | 130 | 4 | 122 | 3.87e-47 | 155 |
| Msa0123540 | AT2G45420.1 | 71.429 | 98 | 28 | 0 | 18 | 115 | 40 | 137 | 4.93e-46 | 153 |
| Msa0123540 | AT4G00210.1 | 60.526 | 114 | 43 | 1 | 11 | 122 | 5 | 118 | 1.20e-45 | 150 |
| Msa0123540 | AT2G31310.1 | 63.107 | 103 | 38 | 0 | 13 | 115 | 5 | 107 | 1.12e-44 | 147 |
| Msa0123540 | AT2G45410.1 | 69.388 | 98 | 30 | 0 | 18 | 115 | 19 | 116 | 1.31e-44 | 147 |
| Msa0123540 | AT4G00220.1 | 67.347 | 98 | 32 | 0 | 18 | 115 | 20 | 117 | 2.00e-44 | 148 |
| Msa0123540 | AT5G06080.1 | 61.905 | 105 | 40 | 0 | 11 | 115 | 3 | 107 | 1.49e-43 | 144 |
| Msa0123540 | AT3G27650.1 | 60.000 | 100 | 39 | 1 | 15 | 114 | 39 | 137 | 1.61e-38 | 130 |
| Msa0123540 | AT5G63090.4 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.57e-36 | 125 |
| Msa0123540 | AT5G63090.3 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.57e-36 | 125 |
| Msa0123540 | AT5G63090.2 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.57e-36 | 125 |
| Msa0123540 | AT5G63090.1 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.57e-36 | 125 |
| Msa0123540 | AT2G30130.1 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 7.68e-36 | 125 |
| Msa0123540 | AT1G31320.1 | 55.208 | 96 | 42 | 1 | 7 | 102 | 5 | 99 | 2.70e-34 | 120 |
| Msa0123540 | AT1G07900.1 | 53.398 | 103 | 47 | 1 | 15 | 117 | 33 | 134 | 4.69e-34 | 120 |
| Msa0123540 | AT5G66870.1 | 55.238 | 105 | 46 | 1 | 11 | 115 | 3 | 106 | 2.42e-33 | 121 |
| Msa0123540 | AT2G30340.2 | 47.934 | 121 | 60 | 2 | 15 | 133 | 53 | 172 | 2.92e-33 | 120 |
| Msa0123540 | AT2G30340.1 | 48.333 | 120 | 59 | 2 | 15 | 132 | 52 | 170 | 3.07e-33 | 120 |
| Msa0123540 | AT1G16530.1 | 45.968 | 124 | 65 | 2 | 15 | 137 | 14 | 136 | 6.38e-33 | 116 |
| Msa0123540 | AT2G28500.1 | 48.696 | 115 | 57 | 2 | 15 | 129 | 55 | 167 | 7.99e-33 | 118 |
| Msa0123540 | AT2G23660.2 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.51e-32 | 119 |
| Msa0123540 | AT2G23660.3 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.51e-32 | 119 |
| Msa0123540 | AT2G23660.1 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.51e-32 | 119 |
| Msa0123540 | AT3G26660.1 | 44.248 | 113 | 61 | 2 | 16 | 127 | 6 | 117 | 1.56e-31 | 111 |
| Msa0123540 | AT3G11090.1 | 51.429 | 105 | 49 | 2 | 5 | 109 | 2 | 104 | 1.46e-30 | 110 |
| Msa0123540 | AT3G26620.1 | 44.340 | 106 | 58 | 1 | 16 | 121 | 6 | 110 | 1.49e-30 | 108 |
| Msa0123540 | AT1G65620.1 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.09e-29 | 109 |
| Msa0123540 | AT1G65620.4 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.09e-29 | 109 |
| Msa0123540 | AT1G65620.3 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.09e-29 | 109 |
| Msa0123540 | AT1G65620.5 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.09e-29 | 109 |
| Msa0123540 | AT1G65620.2 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.09e-29 | 109 |
| Msa0123540 | AT2G40470.2 | 52.632 | 114 | 53 | 1 | 15 | 128 | 20 | 132 | 2.41e-29 | 108 |
| Msa0123540 | AT2G40470.1 | 52.632 | 114 | 53 | 1 | 15 | 128 | 45 | 157 | 4.57e-29 | 108 |
| Msa0123540 | AT3G50510.1 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 1.99e-23 | 93.2 |
| Msa0123540 | AT3G50510.2 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 1.99e-23 | 93.2 |
| Msa0123540 | AT1G72980.1 | 35.000 | 120 | 77 | 1 | 12 | 131 | 10 | 128 | 2.09e-17 | 77.4 |
| Msa0123540 | AT5G35900.1 | 40.000 | 100 | 59 | 1 | 16 | 115 | 6 | 104 | 2.39e-17 | 77.0 |
| Msa0123540 | AT3G47870.1 | 35.000 | 100 | 64 | 1 | 16 | 115 | 37 | 135 | 1.16e-16 | 77.0 |
| Msa0123540 | AT3G13850.1 | 38.000 | 100 | 61 | 1 | 16 | 115 | 37 | 135 | 1.72e-16 | 75.9 |
| Msa0123540 | AT1G06280.1 | 45.570 | 79 | 34 | 2 | 16 | 90 | 25 | 98 | 6.38e-16 | 73.2 |
Find 42 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTATTATAGATCCTGTTTA+TGG | 0.144291 | 1_3:-50727943 | Msa0123540:CDS |
| GCAGCTATTCATAAAGTATT+TGG | 0.189937 | 1_3:-50728054 | Msa0123540:CDS |
| TTCATATTTGTGGGACAAAA+TGG | 0.226031 | 1_3:+50726470 | None:intergenic |
| TAAAAGAATGTCATATGATT+TGG | 0.238586 | 1_3:-50726354 | Msa0123540:CDS |
| AATGATGGGAAACTATAATT+AGG | 0.332280 | 1_3:-50726306 | None:intergenic |
| AGGGAGCTCTTAGGAGATAT+AGG | 0.344167 | 1_3:+50726446 | None:intergenic |
| TGAATAGCTGCAAATCTTGC+AGG | 0.346463 | 1_3:+50728066 | None:intergenic |
| CATGGACATCCTGAGGATCT+AGG | 0.355593 | 1_3:+50728165 | None:intergenic |
| AAAAGAATGTCATATGATTT+GGG | 0.357241 | 1_3:-50726353 | Msa0123540:CDS |
| TGATTTATGGCTTCTACAAA+TGG | 0.394946 | 1_3:-50728195 | None:intergenic |
| GATATAGGGTTCATATTTGT+GGG | 0.408424 | 1_3:+50726461 | None:intergenic |
| ATTGAATCAAGGGAGCTCTT+AGG | 0.410397 | 1_3:+50726437 | None:intergenic |
| CCTAGAGGAGACAGAGAACT+TGG | 0.411652 | 1_3:-50726537 | Msa0123540:CDS |
| CCAAGTTCTCTGTCTCCTCT+AGG | 0.426551 | 1_3:+50726537 | None:intergenic |
| AACTTGGAGAATCAATGGTC+AGG | 0.427708 | 1_3:-50726521 | Msa0123540:CDS |
| AGAAACATCTCTCGGAATGA+TGG | 0.438279 | 1_3:-50726321 | Msa0123540:CDS |
| GGCTCTAGCCCTAGATCCTC+AGG | 0.441315 | 1_3:-50728174 | Msa0123540:CDS |
| GCAATTGCGGCAACAGCATC+GGG | 0.447204 | 1_3:+50727982 | None:intergenic |
| AGATATAGGGTTCATATTTG+TGG | 0.449622 | 1_3:+50726460 | None:intergenic |
| GGGAGCTCTTAGGAGATATA+GGG | 0.451691 | 1_3:+50726447 | None:intergenic |
| TGTGATACACAACCATAAAC+AGG | 0.455984 | 1_3:+50727931 | None:intergenic |
| TGCTAAAATCAATTGAATCA+AGG | 0.464352 | 1_3:+50726426 | None:intergenic |
| CAGAGAACTTGGAGAATCAA+TGG | 0.493895 | 1_3:-50726526 | Msa0123540:CDS |
| GCTAAAATCAATTGAATCAA+GGG | 0.496109 | 1_3:+50726427 | None:intergenic |
| TCTTGCAGGTCCTTGTTCAC+AGG | 0.500506 | 1_3:+50728080 | None:intergenic |
| AGCAATTGCGGCAACAGCAT+CGG | 0.501002 | 1_3:+50727981 | None:intergenic |
| GAAACATCTCTCGGAATGAT+GGG | 0.517494 | 1_3:-50726320 | Msa0123540:CDS |
| ATGGACATCCTGAGGATCTA+GGG | 0.518326 | 1_3:+50728166 | None:intergenic |
| ATTCAGAAGTACACTTTCTA+CGG | 0.522613 | 1_3:+50728124 | None:intergenic |
| AGAAATTTGCATGCCCCACA+TGG | 0.523694 | 1_3:+50728147 | None:intergenic |
| ACTTGGAGAATCAATGGTCA+GGG | 0.558166 | 1_3:-50726520 | Msa0123540:CDS |
| AGGTAAATTCAGTAGCATCT+TGG | 0.559995 | 1_3:+50728017 | None:intergenic |
| GCATCGGGACGATCATGAGC+AGG | 0.573962 | 1_3:+50727997 | None:intergenic |
| TTGAGCTTCATAAGCAATTG+CGG | 0.600657 | 1_3:+50727969 | None:intergenic |
| GATCCTCAGGATGTCCATGT+GGG | 0.601232 | 1_3:-50728161 | Msa0123540:CDS |
| AGATCCTCAGGATGTCCATG+TGG | 0.614428 | 1_3:-50728162 | Msa0123540:CDS |
| AGCACAACTAATGCAAGTGA+AGG | 0.620211 | 1_3:-50726582 | Msa0123540:CDS |
| GAGCGGCAAGAAACATCTCT+CGG | 0.627630 | 1_3:-50726329 | Msa0123540:CDS |
| AGTAATTAGTCAAAGCCTAG+AGG | 0.635942 | 1_3:-50726552 | Msa0123540:CDS |
| TGCCCCACATGGACATCCTG+AGG | 0.640571 | 1_3:+50728158 | None:intergenic |
| TGTCATATGATTTGGGTGAG+CGG | 0.650337 | 1_3:-50726346 | Msa0123540:CDS |
| ATCCTCAGGATGTCCATGTG+GGG | 0.681917 | 1_3:-50728160 | Msa0123540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_3:50726940-50726959 | Msa0123540:intron | 10.0% |
| !!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_3:50727329-50727348 | None:intergenic | 10.0% |
| !!! | AAATATATCATTTTAATTTG+GGG | + | chr1_3:50727461-50727480 | None:intergenic | 10.0% |
| !!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_3:50726940-50726959 | Msa0123540:intron | 10.0% |
| !!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_3:50727329-50727348 | None:intergenic | 10.0% |
| !!! | AAATATATCATTTTAATTTG+GGG | + | chr1_3:50727461-50727480 | None:intergenic | 10.0% |
| !! | TGTGTTAAAATGTTAATTAT+AGG | + | chr1_3:50726626-50726645 | None:intergenic | 15.0% |
| !! | TTACTCCTTTAAATAAATAA+CGG | - | chr1_3:50727720-50727739 | Msa0123540:intron | 15.0% |
| !! | TGTGTTAAAATGTTAATTAT+AGG | + | chr1_3:50726626-50726645 | None:intergenic | 15.0% |
| !! | TTACTCCTTTAAATAAATAA+CGG | - | chr1_3:50727720-50727739 | Msa0123540:intron | 15.0% |
| !! | CAAAAACTTCCTATATAAAA+AGG | - | chr1_3:50726808-50726827 | Msa0123540:intron | 20.0% |
| !!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_3:50726989-50727008 | Msa0123540:intron | 20.0% |
| !!! | AAATATACCTTTTTGTATGA+AGG | + | chr1_3:50727544-50727563 | None:intergenic | 20.0% |
| !!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_3:50727684-50727703 | None:intergenic | 20.0% |
| !! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_3:50727728-50727747 | None:intergenic | 20.0% |
| !! | TGTCATATTAATTGTTCATA+TGG | - | chr1_3:50727819-50727838 | Msa0123540:intron | 20.0% |
| !! | GTCATATTAATTGTTCATAT+GGG | - | chr1_3:50727820-50727839 | Msa0123540:intron | 20.0% |
| !! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_3:50727882-50727901 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTCATATGATT+TGG | - | chr1_3:50728142-50728161 | Msa0123540:CDS | 20.0% |
| !! | AAAAGAATGTCATATGATTT+GGG | - | chr1_3:50728143-50728162 | Msa0123540:CDS | 20.0% |
| !! | CAAAAACTTCCTATATAAAA+AGG | - | chr1_3:50726808-50726827 | Msa0123540:intron | 20.0% |
| !!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_3:50726989-50727008 | Msa0123540:intron | 20.0% |
| !!! | AAATATACCTTTTTGTATGA+AGG | + | chr1_3:50727544-50727563 | None:intergenic | 20.0% |
| !!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_3:50727684-50727703 | None:intergenic | 20.0% |
| !! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_3:50727728-50727747 | None:intergenic | 20.0% |
| !! | TGTCATATTAATTGTTCATA+TGG | - | chr1_3:50727819-50727838 | Msa0123540:intron | 20.0% |
| !! | GTCATATTAATTGTTCATAT+GGG | - | chr1_3:50727820-50727839 | Msa0123540:intron | 20.0% |
| !! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_3:50727882-50727901 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTCATATGATT+TGG | - | chr1_3:50728142-50728161 | Msa0123540:CDS | 20.0% |
| !! | AAAAGAATGTCATATGATTT+GGG | - | chr1_3:50728143-50728162 | Msa0123540:CDS | 20.0% |
| !!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_3:50726588-50726607 | Msa0123540:CDS | 25.0% |
| !! | AAACTGCAACCTTTTTATAT+AGG | + | chr1_3:50726820-50726839 | None:intergenic | 25.0% |
| ! | ACAAAAATCAAAGCAATAGA+GGG | + | chr1_3:50727197-50727216 | None:intergenic | 25.0% |
| ! | ATAATTTCACAAAGAAAAGG+AGG | + | chr1_3:50727227-50727246 | None:intergenic | 25.0% |
| !! | TCCTTTTCTTTGTGAAATTA+TGG | - | chr1_3:50727226-50727245 | Msa0123540:intron | 25.0% |
| ! | ACCATAATTTCACAAAGAAA+AGG | + | chr1_3:50727230-50727249 | None:intergenic | 25.0% |
| !! | CCATTTGATAAACAACTTTT+GGG | + | chr1_3:50727256-50727275 | None:intergenic | 25.0% |
| !! | ACCATTTGATAAACAACTTT+TGG | + | chr1_3:50727257-50727276 | None:intergenic | 25.0% |
| ! | ACAATTTCCTTCATACAAAA+AGG | - | chr1_3:50727534-50727553 | Msa0123540:intron | 25.0% |
| ! | ATAAATAACGGTACATTGAT+TGG | - | chr1_3:50727732-50727751 | Msa0123540:intron | 25.0% |
| ! | AAATATATATTCAACGTTCG+CGG | + | chr1_3:50727797-50727816 | None:intergenic | 25.0% |
| ! | CTAATCAAAATACAAAAACG+GGG | + | chr1_3:50727880-50727899 | None:intergenic | 25.0% |
| ! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_3:50727881-50727900 | None:intergenic | 25.0% |
| ! | GCTAAAATCAATTGAATCAA+GGG | + | chr1_3:50728072-50728091 | None:intergenic | 25.0% |
| ! | TGCTAAAATCAATTGAATCA+AGG | + | chr1_3:50728073-50728092 | None:intergenic | 25.0% |
| !! | TTCTTTTATTAGAGTAAGCT+TGG | + | chr1_3:50728130-50728149 | None:intergenic | 25.0% |
| !!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_3:50726588-50726607 | Msa0123540:CDS | 25.0% |
| !! | AAACTGCAACCTTTTTATAT+AGG | + | chr1_3:50726820-50726839 | None:intergenic | 25.0% |
| ! | ACAAAAATCAAAGCAATAGA+GGG | + | chr1_3:50727197-50727216 | None:intergenic | 25.0% |
| ! | ATAATTTCACAAAGAAAAGG+AGG | + | chr1_3:50727227-50727246 | None:intergenic | 25.0% |
| !! | TCCTTTTCTTTGTGAAATTA+TGG | - | chr1_3:50727226-50727245 | Msa0123540:intron | 25.0% |
| ! | ACCATAATTTCACAAAGAAA+AGG | + | chr1_3:50727230-50727249 | None:intergenic | 25.0% |
| !! | CCATTTGATAAACAACTTTT+GGG | + | chr1_3:50727256-50727275 | None:intergenic | 25.0% |
| !! | ACCATTTGATAAACAACTTT+TGG | + | chr1_3:50727257-50727276 | None:intergenic | 25.0% |
| ! | ACAATTTCCTTCATACAAAA+AGG | - | chr1_3:50727534-50727553 | Msa0123540:intron | 25.0% |
| ! | ATAAATAACGGTACATTGAT+TGG | - | chr1_3:50727732-50727751 | Msa0123540:intron | 25.0% |
| ! | AAATATATATTCAACGTTCG+CGG | + | chr1_3:50727797-50727816 | None:intergenic | 25.0% |
| ! | CTAATCAAAATACAAAAACG+GGG | + | chr1_3:50727880-50727899 | None:intergenic | 25.0% |
| ! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_3:50727881-50727900 | None:intergenic | 25.0% |
| ! | GCTAAAATCAATTGAATCAA+GGG | + | chr1_3:50728072-50728091 | None:intergenic | 25.0% |
| ! | TGCTAAAATCAATTGAATCA+AGG | + | chr1_3:50728073-50728092 | None:intergenic | 25.0% |
| !! | TTCTTTTATTAGAGTAAGCT+TGG | + | chr1_3:50728130-50728149 | None:intergenic | 25.0% |
| ! | ATTCAGAAGTACACTTTCTA+CGG | + | chr1_3:50726375-50726394 | None:intergenic | 30.0% |
| ! | GCAGCTATTCATAAAGTATT+TGG | - | chr1_3:50726442-50726461 | Msa0123540:CDS | 30.0% |
| CGTATTATAGATCCTGTTTA+TGG | - | chr1_3:50726553-50726572 | Msa0123540:CDS | 30.0% | |
| TACCTATGTATACAACAACA+GGG | + | chr1_3:50727067-50727086 | None:intergenic | 30.0% | |
| TTGTTGTATACATAGGTAGT+AGG | - | chr1_3:50727069-50727088 | Msa0123540:intron | 30.0% | |
| TCACAAAAGTTGTCAAAAAG+TGG | + | chr1_3:50727134-50727153 | None:intergenic | 30.0% | |
| CACAAAAATCAAAGCAATAG+AGG | + | chr1_3:50727198-50727217 | None:intergenic | 30.0% | |
| CCCAAAAGTTGTTTATCAAA+TGG | - | chr1_3:50727253-50727272 | Msa0123540:intron | 30.0% | |
| !! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_3:50727839-50727858 | Msa0123540:intron | 30.0% |
| !!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_3:50727878-50727897 | Msa0123540:intron | 30.0% |
| TTCATATTTGTGGGACAAAA+TGG | + | chr1_3:50728029-50728048 | None:intergenic | 30.0% | |
| GATATAGGGTTCATATTTGT+GGG | + | chr1_3:50728038-50728057 | None:intergenic | 30.0% | |
| AGATATAGGGTTCATATTTG+TGG | + | chr1_3:50728039-50728058 | None:intergenic | 30.0% | |
| ! | ATTCAGAAGTACACTTTCTA+CGG | + | chr1_3:50726375-50726394 | None:intergenic | 30.0% |
| ! | GCAGCTATTCATAAAGTATT+TGG | - | chr1_3:50726442-50726461 | Msa0123540:CDS | 30.0% |
| CGTATTATAGATCCTGTTTA+TGG | - | chr1_3:50726553-50726572 | Msa0123540:CDS | 30.0% | |
| TACCTATGTATACAACAACA+GGG | + | chr1_3:50727067-50727086 | None:intergenic | 30.0% | |
| TTGTTGTATACATAGGTAGT+AGG | - | chr1_3:50727069-50727088 | Msa0123540:intron | 30.0% | |
| TCACAAAAGTTGTCAAAAAG+TGG | + | chr1_3:50727134-50727153 | None:intergenic | 30.0% | |
| CACAAAAATCAAAGCAATAG+AGG | + | chr1_3:50727198-50727217 | None:intergenic | 30.0% | |
| CCCAAAAGTTGTTTATCAAA+TGG | - | chr1_3:50727253-50727272 | Msa0123540:intron | 30.0% | |
| !! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_3:50727839-50727858 | Msa0123540:intron | 30.0% |
| !!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_3:50727878-50727897 | Msa0123540:intron | 30.0% |
| TTCATATTTGTGGGACAAAA+TGG | + | chr1_3:50728029-50728048 | None:intergenic | 30.0% | |
| GATATAGGGTTCATATTTGT+GGG | + | chr1_3:50728038-50728057 | None:intergenic | 30.0% | |
| AGATATAGGGTTCATATTTG+TGG | + | chr1_3:50728039-50728058 | None:intergenic | 30.0% | |
| CCTTGTTCACAGGAAAAATA+AGG | + | chr1_3:50726409-50726428 | None:intergenic | 35.0% | |
| !!! | CCTTATTTTTCCTGTGAACA+AGG | - | chr1_3:50726406-50726425 | Msa0123540:CDS | 35.0% |
| AGGTAAATTCAGTAGCATCT+TGG | + | chr1_3:50726482-50726501 | None:intergenic | 35.0% | |
| TTGAGCTTCATAAGCAATTG+CGG | + | chr1_3:50726530-50726549 | None:intergenic | 35.0% | |
| TGTGATACACAACCATAAAC+AGG | + | chr1_3:50726568-50726587 | None:intergenic | 35.0% | |
| CTACCTATGTATACAACAAC+AGG | + | chr1_3:50727068-50727087 | None:intergenic | 35.0% | |
| GTATACATAGGTAGTAGGTT+TGG | - | chr1_3:50727074-50727093 | Msa0123540:intron | 35.0% | |
| ! | TCACAAAGAAAAGGAGGTAT+TGG | + | chr1_3:50727221-50727240 | None:intergenic | 35.0% |
| ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_3:50727429-50727448 | Msa0123540:intron | 35.0% | |
| ! | AATAACGGTACATTGATTGG+TGG | - | chr1_3:50727735-50727754 | Msa0123540:intron | 35.0% |
| !! | TACATTGATTGGTGGATTTG+CGG | - | chr1_3:50727743-50727762 | Msa0123540:intron | 35.0% |
| AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_3:50727944-50727963 | Msa0123540:CDS | 35.0% | |
| CCTTGTTCACAGGAAAAATA+AGG | + | chr1_3:50726409-50726428 | None:intergenic | 35.0% | |
| !!! | CCTTATTTTTCCTGTGAACA+AGG | - | chr1_3:50726406-50726425 | Msa0123540:CDS | 35.0% |
| AGGTAAATTCAGTAGCATCT+TGG | + | chr1_3:50726482-50726501 | None:intergenic | 35.0% | |
| TTGAGCTTCATAAGCAATTG+CGG | + | chr1_3:50726530-50726549 | None:intergenic | 35.0% | |
| TGTGATACACAACCATAAAC+AGG | + | chr1_3:50726568-50726587 | None:intergenic | 35.0% | |
| CTACCTATGTATACAACAAC+AGG | + | chr1_3:50727068-50727087 | None:intergenic | 35.0% | |
| GTATACATAGGTAGTAGGTT+TGG | - | chr1_3:50727074-50727093 | Msa0123540:intron | 35.0% | |
| ! | TCACAAAGAAAAGGAGGTAT+TGG | + | chr1_3:50727221-50727240 | None:intergenic | 35.0% |
| ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_3:50727429-50727448 | Msa0123540:intron | 35.0% | |
| ! | AATAACGGTACATTGATTGG+TGG | - | chr1_3:50727735-50727754 | Msa0123540:intron | 35.0% |
| !! | TACATTGATTGGTGGATTTG+CGG | - | chr1_3:50727743-50727762 | Msa0123540:intron | 35.0% |
| AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_3:50727944-50727963 | Msa0123540:CDS | 35.0% | |
| TGAATAGCTGCAAATCTTGC+AGG | + | chr1_3:50726433-50726452 | None:intergenic | 40.0% | |
| CTCCCTGTTGTTGTATACAT+AGG | - | chr1_3:50727062-50727081 | Msa0123540:intron | 40.0% | |
| ATCGACGAGTAAGAGTTGTT+TGG | - | chr1_3:50727401-50727420 | Msa0123540:intron | 40.0% | |
| AGCACAACTAATGCAAGTGA+AGG | - | chr1_3:50727914-50727933 | Msa0123540:CDS | 40.0% | |
| CAGAGAACTTGGAGAATCAA+TGG | - | chr1_3:50727970-50727989 | Msa0123540:CDS | 40.0% | |
| AACTTGGAGAATCAATGGTC+AGG | - | chr1_3:50727975-50727994 | Msa0123540:CDS | 40.0% | |
| ACTTGGAGAATCAATGGTCA+GGG | - | chr1_3:50727976-50727995 | Msa0123540:CDS | 40.0% | |
| ATTGAATCAAGGGAGCTCTT+AGG | + | chr1_3:50728062-50728081 | None:intergenic | 40.0% | |
| ! | TGTCATATGATTTGGGTGAG+CGG | - | chr1_3:50728150-50728169 | Msa0123540:CDS | 40.0% |
| AGAAACATCTCTCGGAATGA+TGG | - | chr1_3:50728175-50728194 | Msa0123540:CDS | 40.0% | |
| GAAACATCTCTCGGAATGAT+GGG | - | chr1_3:50728176-50728195 | Msa0123540:CDS | 40.0% | |
| TGAATAGCTGCAAATCTTGC+AGG | + | chr1_3:50726433-50726452 | None:intergenic | 40.0% | |
| CTCCCTGTTGTTGTATACAT+AGG | - | chr1_3:50727062-50727081 | Msa0123540:intron | 40.0% | |
| ATCGACGAGTAAGAGTTGTT+TGG | - | chr1_3:50727401-50727420 | Msa0123540:intron | 40.0% | |
| AGCACAACTAATGCAAGTGA+AGG | - | chr1_3:50727914-50727933 | Msa0123540:CDS | 40.0% | |
| CAGAGAACTTGGAGAATCAA+TGG | - | chr1_3:50727970-50727989 | Msa0123540:CDS | 40.0% | |
| AACTTGGAGAATCAATGGTC+AGG | - | chr1_3:50727975-50727994 | Msa0123540:CDS | 40.0% | |
| ACTTGGAGAATCAATGGTCA+GGG | - | chr1_3:50727976-50727995 | Msa0123540:CDS | 40.0% | |
| ATTGAATCAAGGGAGCTCTT+AGG | + | chr1_3:50728062-50728081 | None:intergenic | 40.0% | |
| ! | TGTCATATGATTTGGGTGAG+CGG | - | chr1_3:50728150-50728169 | Msa0123540:CDS | 40.0% |
| AGAAACATCTCTCGGAATGA+TGG | - | chr1_3:50728175-50728194 | Msa0123540:CDS | 40.0% | |
| GAAACATCTCTCGGAATGAT+GGG | - | chr1_3:50728176-50728195 | Msa0123540:CDS | 40.0% | |
| ATGGACATCCTGAGGATCTA+GGG | + | chr1_3:50726333-50726352 | None:intergenic | 45.0% | |
| AGAAATTTGCATGCCCCACA+TGG | + | chr1_3:50726352-50726371 | None:intergenic | 45.0% | |
| CGGCGCAAACGTGATATAAA+AGG | + | chr1_3:50727777-50727796 | None:intergenic | 45.0% | |
| GGGAGCTCTTAGGAGATATA+GGG | + | chr1_3:50728052-50728071 | None:intergenic | 45.0% | |
| AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_3:50728053-50728072 | None:intergenic | 45.0% | |
| ATGGACATCCTGAGGATCTA+GGG | + | chr1_3:50726333-50726352 | None:intergenic | 45.0% | |
| AGAAATTTGCATGCCCCACA+TGG | + | chr1_3:50726352-50726371 | None:intergenic | 45.0% | |
| CGGCGCAAACGTGATATAAA+AGG | + | chr1_3:50727777-50727796 | None:intergenic | 45.0% | |
| GGGAGCTCTTAGGAGATATA+GGG | + | chr1_3:50728052-50728071 | None:intergenic | 45.0% | |
| AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_3:50728053-50728072 | None:intergenic | 45.0% | |
| !!! | AAAATATATCATTTTAATTT+GGG | + | chr1_3:50727462-50727481 | None:intergenic | 5.0% |
| !!! | AAAAATATATCATTTTAATT+TGG | + | chr1_3:50727463-50727482 | None:intergenic | 5.0% |
| !!! | AAAATATATCATTTTAATTT+GGG | + | chr1_3:50727462-50727481 | None:intergenic | 5.0% |
| !!! | AAAAATATATCATTTTAATT+TGG | + | chr1_3:50727463-50727482 | None:intergenic | 5.0% |
| CATGGACATCCTGAGGATCT+AGG | + | chr1_3:50726334-50726353 | None:intergenic | 50.0% | |
| AGATCCTCAGGATGTCCATG+TGG | - | chr1_3:50726334-50726353 | Msa0123540:CDS | 50.0% | |
| GATCCTCAGGATGTCCATGT+GGG | - | chr1_3:50726335-50726354 | Msa0123540:CDS | 50.0% | |
| ATCCTCAGGATGTCCATGTG+GGG | - | chr1_3:50726336-50726355 | Msa0123540:CDS | 50.0% | |
| TCTTGCAGGTCCTTGTTCAC+AGG | + | chr1_3:50726419-50726438 | None:intergenic | 50.0% | |
| AGCAATTGCGGCAACAGCAT+CGG | + | chr1_3:50726518-50726537 | None:intergenic | 50.0% | |
| CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_3:50727962-50727981 | None:intergenic | 50.0% | |
| CCTAGAGGAGACAGAGAACT+TGG | - | chr1_3:50727959-50727978 | Msa0123540:CDS | 50.0% | |
| GAGCGGCAAGAAACATCTCT+CGG | - | chr1_3:50728167-50728186 | Msa0123540:CDS | 50.0% | |
| CATGGACATCCTGAGGATCT+AGG | + | chr1_3:50726334-50726353 | None:intergenic | 50.0% | |
| AGATCCTCAGGATGTCCATG+TGG | - | chr1_3:50726334-50726353 | Msa0123540:CDS | 50.0% | |
| GATCCTCAGGATGTCCATGT+GGG | - | chr1_3:50726335-50726354 | Msa0123540:CDS | 50.0% | |
| ATCCTCAGGATGTCCATGTG+GGG | - | chr1_3:50726336-50726355 | Msa0123540:CDS | 50.0% | |
| TCTTGCAGGTCCTTGTTCAC+AGG | + | chr1_3:50726419-50726438 | None:intergenic | 50.0% | |
| AGCAATTGCGGCAACAGCAT+CGG | + | chr1_3:50726518-50726537 | None:intergenic | 50.0% | |
| CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_3:50727962-50727981 | None:intergenic | 50.0% | |
| CCTAGAGGAGACAGAGAACT+TGG | - | chr1_3:50727959-50727978 | Msa0123540:CDS | 50.0% | |
| GAGCGGCAAGAAACATCTCT+CGG | - | chr1_3:50728167-50728186 | Msa0123540:CDS | 50.0% | |
| GCAATTGCGGCAACAGCATC+GGG | + | chr1_3:50726517-50726536 | None:intergenic | 55.0% | |
| GCAATTGCGGCAACAGCATC+GGG | + | chr1_3:50726517-50726536 | None:intergenic | 55.0% | |
| ! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_3:50726322-50726341 | Msa0123540:CDS | 60.0% |
| TGCCCCACATGGACATCCTG+AGG | + | chr1_3:50726341-50726360 | None:intergenic | 60.0% | |
| GCATCGGGACGATCATGAGC+AGG | + | chr1_3:50726502-50726521 | None:intergenic | 60.0% | |
| ! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_3:50726322-50726341 | Msa0123540:CDS | 60.0% |
| TGCCCCACATGGACATCCTG+AGG | + | chr1_3:50726341-50726360 | None:intergenic | 60.0% | |
| GCATCGGGACGATCATGAGC+AGG | + | chr1_3:50726502-50726521 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 50726307 | 50728211 | 50726307 | ID=Msa0123540;Name=Msa0123540 |
| chr1_3 | mRNA | 50726307 | 50728211 | 50726307 | ID=Msa0123540-mRNA-1;Parent=Msa0123540;Name=Msa0123540-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|204 |
| chr1_3 | exon | 50727909 | 50728211 | 50727909 | ID=Msa0123540-mRNA-1:exon:15501;Parent=Msa0123540-mRNA-1 |
| chr1_3 | exon | 50726307 | 50726618 | 50726307 | ID=Msa0123540-mRNA-1:exon:15500;Parent=Msa0123540-mRNA-1 |
| chr1_3 | CDS | 50727909 | 50728211 | 50727909 | ID=Msa0123540-mRNA-1:cds;Parent=Msa0123540-mRNA-1 |
| chr1_3 | CDS | 50726307 | 50726618 | 50726307 | ID=Msa0123540-mRNA-1:cds;Parent=Msa0123540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
