AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1294790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294790 MtrunA17_Chr8g0371981 97.368 342 9 0 1 342 1 342 0.0 674
Msa1294790 MtrunA17_Chr5g0405401 51.714 350 90 17 1 338 1 283 1.16e-76 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294790 AT5G66230.1 48.580 352 143 12 1 337 1 329 5.28e-81 250
Msa1294790 AT5G66230.2 48.011 352 145 12 1 337 217 545 9.48e-77 245
Msa1294790 AT3G51230.1 46.798 203 95 7 1 202 1 191 3.58e-43 148

Find 91 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTAATTGACAAGATTCT+TGG 0.223838 8_3:+52708101 Msa1294790:three_prime_UTR
AAACGAATATGCTTTCCTTT+TGG 0.268585 8_3:-52707902 None:intergenic
TGATTAGCAATTCTAAATAA+TGG 0.281968 8_3:+52708143 Msa1294790:three_prime_UTR
GAGGGGTGTTTGCAGGAGTT+GGG 0.290208 8_3:-52707116 None:intergenic
GAGATTTGAGGGGTGTTTGC+AGG 0.306768 8_3:-52707123 None:intergenic
AATTTCTAAAATGCAACTTT+TGG 0.321476 8_3:+52708196 Msa1294790:three_prime_UTR
TGAGGGGTGTTTGCAGGAGT+TGG 0.326042 8_3:-52707117 None:intergenic
TTCTGGTGAGGCTTTGTTGA+GGG 0.378681 8_3:+52706981 Msa1294790:CDS
ATTGCTAATCATAAACTTGC+TGG 0.379517 8_3:-52708131 None:intergenic
GTGAAGAAGACTCCAGGTTC+TGG 0.383582 8_3:+52706964 Msa1294790:CDS
AATGTGGTTCCAAAGTTTGC+TGG 0.401675 8_3:+52707767 Msa1294790:CDS
TCCTAGCACTAACTCCATTC+AGG 0.401932 8_3:-52708031 None:intergenic
GAGCATTCAACCACATGTTA+TGG 0.410811 8_3:-52708054 None:intergenic
AATGAAAGAAACAATATCAT+TGG 0.420968 8_3:-52708076 None:intergenic
GTATGTTTCCCAGCAAACTT+TGG 0.422670 8_3:-52707776 None:intergenic
GGCATAATCATAAGGTAGAT+TGG 0.423121 8_3:+52708164 Msa1294790:three_prime_UTR
AAAGGGACAAGCACAACAAC+AGG 0.423276 8_3:+52706834 Msa1294790:CDS
TTCGAAATCAAGACAAAGAA+AGG 0.427601 8_3:+52706816 Msa1294790:CDS
GCCAACGATGGGAGAATCAT+TGG 0.432716 8_3:-52706881 None:intergenic
TTCAGGGAAGATCGAAGATT+CGG 0.443167 8_3:+52706783 Msa1294790:intron
AAGATGATGGTGATTCCATT+TGG 0.444967 8_3:+52707561 Msa1294790:CDS
AGGGGTGTTTGCAGGAGTTG+GGG 0.457618 8_3:-52707115 None:intergenic
TGAGGAGGATGATTACTATG+AGG 0.469908 8_3:+52707655 Msa1294790:CDS
TGAGGTAGAAGAAGATGAGG+AGG 0.471514 8_3:+52707640 Msa1294790:CDS
AAGAATTGCTCACTTGAAGA+TGG 0.472162 8_3:-52706546 None:intergenic
TAAATAATGGCATAATCATA+AGG 0.474806 8_3:+52708156 Msa1294790:three_prime_UTR
AATGTTCACAACACTGCCAC+TGG 0.474921 8_3:+52707147 Msa1294790:CDS
AGCTGAGGTAGAAGAAGATG+AGG 0.475342 8_3:+52707637 Msa1294790:CDS
AACAAAGCCTCACCAGAACC+TGG 0.476812 8_3:-52706976 None:intergenic
GTCGAGTATTGCGAAGCAAA+GGG 0.479477 8_3:+52706933 Msa1294790:CDS
TCAAGAACAACTCATTCCTC+AGG 0.485642 8_3:+52707200 Msa1294790:CDS
CTTTCAATCACTTTCAACAA+TGG 0.487904 8_3:+52706446 Msa1294790:exon
GAGTTAACAAATTGAAGAAA+AGG 0.490460 8_3:-52707075 None:intergenic
TTGCGAAGCAAAGGGGAAGC+CGG 0.490483 8_3:+52706941 Msa1294790:CDS
AAGGGGTTGCCAACTCCAAA+AGG 0.491437 8_3:+52707887 Msa1294790:CDS
GAAGAAGAAGAGTATGCTGA+TGG 0.492765 8_3:+52707686 Msa1294790:CDS
TGTTCTTGAACAACAGAAGA+AGG 0.497351 8_3:-52707186 None:intergenic
TCTGGTGAGGCTTTGTTGAG+GGG 0.501445 8_3:+52706982 Msa1294790:CDS
TGAAGATGAGATTGTGGAAG+AGG 0.502605 8_3:+52707820 Msa1294790:CDS
GAGGAGGATGATTACTATGA+GGG 0.504175 8_3:+52707656 Msa1294790:CDS
ACTCTTCTTGCGGTGGATGA+AGG 0.505990 8_3:-52706474 None:intergenic
CCCATCGTTGGCCTTGCGAA+TGG 0.506140 8_3:+52706892 Msa1294790:CDS
GAAGAAGAGTATGCTGATGG+AGG 0.507800 8_3:+52707689 Msa1294790:CDS
TGTGAACATTGGAGATTTGA+GGG 0.508380 8_3:-52707134 None:intergenic
TGCGAAGCAAAGGGGAAGCC+GGG 0.508660 8_3:+52706942 Msa1294790:CDS
TTGTGAACATTGGAGATTTG+AGG 0.511371 8_3:-52707135 None:intergenic
ATGTGGTTCCAAAGTTTGCT+GGG 0.519914 8_3:+52707768 Msa1294790:CDS
GTTGGGGCAAGAAGTTGCAT+TGG 0.524680 8_3:-52707099 None:intergenic
ATTGACTTGAATTGACCAAA+TGG 0.542604 8_3:-52707576 None:intergenic
GTTCTGGTGAGGCTTTGTTG+AGG 0.549031 8_3:+52706980 Msa1294790:CDS
AAGAAGAGTATGCTGATGGA+GGG 0.550657 8_3:+52707690 Msa1294790:CDS
GTTACAGAAGACTCTAAGAT+GGG 0.553091 8_3:+52707530 Msa1294790:CDS
ACCTGAATGGAGTTAGTGCT+AGG 0.554185 8_3:+52708030 Msa1294790:three_prime_UTR
TCCAATGATTCTCCCATCGT+TGG 0.556712 8_3:+52706880 Msa1294790:CDS
GGTTACAGAAGACTCTAAGA+TGG 0.557417 8_3:+52707529 Msa1294790:CDS
AGCCGGGTGAAGAAGACTCC+AGG 0.558034 8_3:+52706958 Msa1294790:CDS
TGTCGAGTATTGCGAAGCAA+AGG 0.560390 8_3:+52706932 Msa1294790:CDS
AGAATTGCTCACTTGAAGAT+GGG 0.562428 8_3:-52706545 None:intergenic
ACCATTCGCAAGGCCAACGA+TGG 0.562728 8_3:-52706893 None:intergenic
AGCAACATAGGTGTGAATGA+AGG 0.563852 8_3:+52707743 Msa1294790:CDS
TCTTGTGACTCTTCTTGCGG+TGG 0.565083 8_3:-52706481 None:intergenic
TGATCTTGTGACTCTTCTTG+CGG 0.576495 8_3:-52706484 None:intergenic
AGATTTCTCTGACAAATCTG+AGG 0.585613 8_3:+52707508 Msa1294790:CDS
TTACTTGATGAACTGTGTGA+GGG 0.586074 8_3:+52707716 Msa1294790:CDS
TCGAAATCAAGACAAAGAAA+GGG 0.587811 8_3:+52706817 Msa1294790:CDS
TGAGATTTCTAAACTGACAA+TGG 0.589958 8_3:+52707044 Msa1294790:CDS
ATGGGGTCCACAGAAGATGA+TGG 0.602409 8_3:+52707548 Msa1294790:CDS
GTTACTTGATGAACTGTGTG+AGG 0.604205 8_3:+52707715 Msa1294790:CDS
GGAATCACCATCATCTTCTG+TGG 0.604946 8_3:-52707555 None:intergenic
AGATGGGATGTTGTTGACGC+TGG 0.605894 8_3:-52706529 None:intergenic
TAGTGATGAAGATGAGATTG+TGG 0.608219 8_3:+52707814 Msa1294790:CDS
CCATTCGCAAGGCCAACGAT+GGG 0.609625 8_3:-52706892 None:intergenic
GACAAGCACAACAACAGGAT+CGG 0.611365 8_3:+52706839 Msa1294790:CDS
AACCTGGAGTCTTCTTCACC+CGG 0.612775 8_3:-52706960 None:intergenic
GTTGACGCTGGAAGCAGTCA+AGG 0.616386 8_3:-52706517 None:intergenic
AGTGGCAGTGTTGTGAACAT+TGG 0.617139 8_3:-52707145 None:intergenic
TGTGAGGGTTTGAGCAACAT+AGG 0.619396 8_3:+52707731 Msa1294790:CDS
TCAGAGAAATCTAACAGCAG+TGG 0.624435 8_3:-52707497 None:intergenic
TCTCGATCTCACCATTCGCA+AGG 0.625938 8_3:-52706903 None:intergenic
AGATGATGAGGAAATAGCTG+AGG 0.641873 8_3:+52707622 Msa1294790:CDS
TGATGATGATGAAGATGATG+AGG 0.651668 8_3:+52707610 Msa1294790:CDS
GAAGACTCCAGGTTCTGGTG+AGG 0.655414 8_3:+52706969 Msa1294790:CDS
GTGAACATTGGAGATTTGAG+GGG 0.660619 8_3:-52707133 None:intergenic
AGGTGTGAATGAAGGAAATG+TGG 0.670580 8_3:+52707751 Msa1294790:CDS
TGCTTCGCAATACTCGACAG+AGG 0.689458 8_3:-52706928 None:intergenic
TCGAGTATTGCGAAGCAAAG+GGG 0.696553 8_3:+52706934 Msa1294790:CDS
TTACAGAAGACTCTAAGATG+GGG 0.707522 8_3:+52707531 Msa1294790:CDS
TGAAAACTCAGTGAAACCAG+TGG 0.711880 8_3:-52707163 None:intergenic
AGTGCTAGGACCATAACATG+TGG 0.714546 8_3:+52708044 Msa1294790:three_prime_UTR
AGGAACATGACTCTGATGAG+TGG 0.738895 8_3:-52708228 None:intergenic
GACGCTGGAAGCAGTCAAGG+TGG 0.753849 8_3:-52706514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTCAATTTTTGAAAA+TGG + chr8_3:52706666-52706685 Msa1294790:intron 10.0%
!!! AAAATTCAATTTTTGAAAAT+GGG + chr8_3:52706667-52706686 Msa1294790:intron 10.0%
!!! AAAAATTCAATTTTTGAAAA+TGG + chr8_3:52706666-52706685 Msa1294790:intron 10.0%
!!! AAAATTCAATTTTTGAAAAT+GGG + chr8_3:52706667-52706686 Msa1294790:intron 10.0%
!!! AATATTTTCTTGAAAAACTA+AGG - chr8_3:52707400-52707419 None:intergenic 15.0%
!!! AATATTTTCTTGAAAAACTA+AGG - chr8_3:52707400-52707419 None:intergenic 15.0%
!!! AAAAATTCGATTTTTCGAAA+TGG + chr8_3:52706573-52706592 Msa1294790:intron 20.0%
!!! AAAATTCGATTTTTCGAAAT+GGG + chr8_3:52706574-52706593 Msa1294790:intron 20.0%
!!! TAGTTTGTTAAACATGTATT+TGG + chr8_3:52707373-52707392 Msa1294790:intron 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_3:52708079-52708098 None:intergenic 20.0%
!! TGATTAGCAATTCTAAATAA+TGG + chr8_3:52708143-52708162 Msa1294790:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_3:52708156-52708175 Msa1294790:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_3:52708196-52708215 Msa1294790:three_prime_UTR 20.0%
!!! AAAAATTCGATTTTTCGAAA+TGG + chr8_3:52706573-52706592 Msa1294790:intron 20.0%
!!! AAAATTCGATTTTTCGAAAT+GGG + chr8_3:52706574-52706593 Msa1294790:intron 20.0%
!!! TAGTTTGTTAAACATGTATT+TGG + chr8_3:52707373-52707392 Msa1294790:intron 20.0%
!! AATGAAAGAAACAATATCAT+TGG - chr8_3:52708079-52708098 None:intergenic 20.0%
!! TGATTAGCAATTCTAAATAA+TGG + chr8_3:52708143-52708162 Msa1294790:three_prime_UTR 20.0%
!! TAAATAATGGCATAATCATA+AGG + chr8_3:52708156-52708175 Msa1294790:three_prime_UTR 20.0%
!!! AATTTCTAAAATGCAACTTT+TGG + chr8_3:52708196-52708215 Msa1294790:three_prime_UTR 20.0%
!!! TTGATCATTTTCAAGTTTGA+TGG + chr8_3:52706599-52706618 Msa1294790:intron 25.0%
!! CTTTATCAAAGATTCGATTT+TGG + chr8_3:52706720-52706739 Msa1294790:intron 25.0%
!!! AAAGATTCGATTTTGGAAAA+TGG + chr8_3:52706727-52706746 Msa1294790:intron 25.0%
!!! AAGATTCGATTTTGGAAAAT+GGG + chr8_3:52706728-52706747 Msa1294790:intron 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_3:52707078-52707097 None:intergenic 25.0%
! ATGCACTTTCTTGAAAAATA+AGG - chr8_3:52707328-52707347 None:intergenic 25.0%
!!! AAGAAAGTGCATGTTTTTTT+TGG + chr8_3:52707336-52707355 Msa1294790:intron 25.0%
!!! TTGATTTGATTTTTGATGTC+AGG + chr8_3:52707430-52707449 Msa1294790:intron 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_3:52707964-52707983 Msa1294790:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_3:52708017-52708036 Msa1294790:three_prime_UTR 25.0%
!!! TTGATCATTTTCAAGTTTGA+TGG + chr8_3:52706599-52706618 Msa1294790:intron 25.0%
!! CTTTATCAAAGATTCGATTT+TGG + chr8_3:52706720-52706739 Msa1294790:intron 25.0%
!!! AAAGATTCGATTTTGGAAAA+TGG + chr8_3:52706727-52706746 Msa1294790:intron 25.0%
!!! AAGATTCGATTTTGGAAAAT+GGG + chr8_3:52706728-52706747 Msa1294790:intron 25.0%
! GAGTTAACAAATTGAAGAAA+AGG - chr8_3:52707078-52707097 None:intergenic 25.0%
! ATGCACTTTCTTGAAAAATA+AGG - chr8_3:52707328-52707347 None:intergenic 25.0%
!!! AAGAAAGTGCATGTTTTTTT+TGG + chr8_3:52707336-52707355 Msa1294790:intron 25.0%
!!! TTGATTTGATTTTTGATGTC+AGG + chr8_3:52707430-52707449 Msa1294790:intron 25.0%
!!! TTGTTTTTGCTTAGTTTTGT+TGG + chr8_3:52707964-52707983 Msa1294790:three_prime_UTR 25.0%
!!! TTTGTTTCTTTTTACCTGAA+TGG + chr8_3:52708017-52708036 Msa1294790:three_prime_UTR 25.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_3:52706446-52706465 Msa1294790:exon 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_3:52706766-52706785 Msa1294790:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_3:52706767-52706786 Msa1294790:intron 30.0%
TTCGAAATCAAGACAAAGAA+AGG + chr8_3:52706816-52706835 Msa1294790:CDS 30.0%
TCGAAATCAAGACAAAGAAA+GGG + chr8_3:52706817-52706836 Msa1294790:CDS 30.0%
! TTCTTCAACCTTTTGCAAAA+GGG - chr8_3:52707019-52707038 None:intergenic 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_3:52707044-52707063 Msa1294790:CDS 30.0%
!! ATTGACTTGAATTGACCAAA+TGG - chr8_3:52707579-52707598 None:intergenic 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_3:52707869-52707888 Msa1294790:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_3:52707905-52707924 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_3:52707910-52707929 Msa1294790:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_3:52708007-52708026 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_3:52708101-52708120 Msa1294790:three_prime_UTR 30.0%
ATTGCTAATCATAAACTTGC+TGG - chr8_3:52708134-52708153 None:intergenic 30.0%
CTTTCAATCACTTTCAACAA+TGG + chr8_3:52706446-52706465 Msa1294790:exon 30.0%
! TCTCATGATTTTCTTGATTC+AGG + chr8_3:52706766-52706785 Msa1294790:intron 30.0%
! CTCATGATTTTCTTGATTCA+GGG + chr8_3:52706767-52706786 Msa1294790:intron 30.0%
TTCGAAATCAAGACAAAGAA+AGG + chr8_3:52706816-52706835 Msa1294790:CDS 30.0%
TCGAAATCAAGACAAAGAAA+GGG + chr8_3:52706817-52706836 Msa1294790:CDS 30.0%
! TTCTTCAACCTTTTGCAAAA+GGG - chr8_3:52707019-52707038 None:intergenic 30.0%
TGAGATTTCTAAACTGACAA+TGG + chr8_3:52707044-52707063 Msa1294790:CDS 30.0%
!! ATTGACTTGAATTGACCAAA+TGG - chr8_3:52707579-52707598 None:intergenic 30.0%
!! TCTGAGATTTTGCATTTGAA+GGG + chr8_3:52707869-52707888 Msa1294790:CDS 30.0%
! AAACGAATATGCTTTCCTTT+TGG - chr8_3:52707905-52707924 None:intergenic 30.0%
!! AAAGCATATTCGTTTTTCTG+AGG + chr8_3:52707910-52707929 Msa1294790:CDS 30.0%
AAGAAACAAAAGCCAAAAAG+TGG - chr8_3:52708007-52708026 None:intergenic 30.0%
TGCTTAATTGACAAGATTCT+TGG + chr8_3:52708101-52708120 Msa1294790:three_prime_UTR 30.0%
ATTGCTAATCATAAACTTGC+TGG - chr8_3:52708134-52708153 None:intergenic 30.0%
AGAATTGCTCACTTGAAGAT+GGG - chr8_3:52706548-52706567 None:intergenic 35.0%
AAGAATTGCTCACTTGAAGA+TGG - chr8_3:52706549-52706568 None:intergenic 35.0%
! CTTCTTCAACCTTTTGCAAA+AGG - chr8_3:52707020-52707039 None:intergenic 35.0%
TGTGAACATTGGAGATTTGA+GGG - chr8_3:52707137-52707156 None:intergenic 35.0%
TTGTGAACATTGGAGATTTG+AGG - chr8_3:52707138-52707157 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_3:52707189-52707208 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_3:52707508-52707527 Msa1294790:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_3:52707530-52707549 Msa1294790:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_3:52707531-52707550 Msa1294790:CDS 35.0%
! AAGATGATGGTGATTCCATT+TGG + chr8_3:52707561-52707580 Msa1294790:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_3:52707610-52707629 Msa1294790:CDS 35.0%
TTACTTGATGAACTGTGTGA+GGG + chr8_3:52707716-52707735 Msa1294790:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_3:52707814-52707833 Msa1294790:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_3:52707868-52707887 Msa1294790:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_3:52707870-52707889 Msa1294790:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_3:52707899-52707918 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_3:52707992-52708011 Msa1294790:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_3:52708164-52708183 Msa1294790:three_prime_UTR 35.0%
AGAATTGCTCACTTGAAGAT+GGG - chr8_3:52706548-52706567 None:intergenic 35.0%
AAGAATTGCTCACTTGAAGA+TGG - chr8_3:52706549-52706568 None:intergenic 35.0%
! CTTCTTCAACCTTTTGCAAA+AGG - chr8_3:52707020-52707039 None:intergenic 35.0%
TGTGAACATTGGAGATTTGA+GGG - chr8_3:52707137-52707156 None:intergenic 35.0%
TTGTGAACATTGGAGATTTG+AGG - chr8_3:52707138-52707157 None:intergenic 35.0%
TGTTCTTGAACAACAGAAGA+AGG - chr8_3:52707189-52707208 None:intergenic 35.0%
AGATTTCTCTGACAAATCTG+AGG + chr8_3:52707508-52707527 Msa1294790:CDS 35.0%
!! GTTACAGAAGACTCTAAGAT+GGG + chr8_3:52707530-52707549 Msa1294790:CDS 35.0%
!! TTACAGAAGACTCTAAGATG+GGG + chr8_3:52707531-52707550 Msa1294790:CDS 35.0%
! AAGATGATGGTGATTCCATT+TGG + chr8_3:52707561-52707580 Msa1294790:CDS 35.0%
! TGATGATGATGAAGATGATG+AGG + chr8_3:52707610-52707629 Msa1294790:CDS 35.0%
TTACTTGATGAACTGTGTGA+GGG + chr8_3:52707716-52707735 Msa1294790:CDS 35.0%
TAGTGATGAAGATGAGATTG+TGG + chr8_3:52707814-52707833 Msa1294790:CDS 35.0%
!!! CTCTGAGATTTTGCATTTGA+AGG + chr8_3:52707868-52707887 Msa1294790:CDS 35.0%
! CTGAGATTTTGCATTTGAAG+GGG + chr8_3:52707870-52707889 Msa1294790:CDS 35.0%
!!! ATATGCTTTCCTTTTGGAGT+TGG - chr8_3:52707899-52707918 None:intergenic 35.0%
!! TCTCTTTTGACACCACTTTT+TGG + chr8_3:52707992-52708011 Msa1294790:three_prime_UTR 35.0%
GGCATAATCATAAGGTAGAT+TGG + chr8_3:52708164-52708183 Msa1294790:three_prime_UTR 35.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_3:52706487-52706506 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_3:52706783-52706802 Msa1294790:intron 40.0%
! AGTGAAGACCCTTTTGCAAA+AGG + chr8_3:52707008-52707027 Msa1294790:CDS 40.0%
GTGAACATTGGAGATTTGAG+GGG - chr8_3:52707136-52707155 None:intergenic 40.0%
TGAAAACTCAGTGAAACCAG+TGG - chr8_3:52707166-52707185 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_3:52707200-52707219 Msa1294790:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_3:52707500-52707519 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_3:52707529-52707548 Msa1294790:CDS 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_3:52707622-52707641 Msa1294790:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_3:52707655-52707674 Msa1294790:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_3:52707656-52707675 Msa1294790:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_3:52707686-52707705 Msa1294790:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_3:52707690-52707709 Msa1294790:CDS 40.0%
GTTACTTGATGAACTGTGTG+AGG + chr8_3:52707715-52707734 Msa1294790:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_3:52707743-52707762 Msa1294790:CDS 40.0%
AGGTGTGAATGAAGGAAATG+TGG + chr8_3:52707751-52707770 Msa1294790:CDS 40.0%
AATGTGGTTCCAAAGTTTGC+TGG + chr8_3:52707767-52707786 Msa1294790:CDS 40.0%
! ATGTGGTTCCAAAGTTTGCT+GGG + chr8_3:52707768-52707787 Msa1294790:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_3:52707779-52707798 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_3:52707820-52707839 Msa1294790:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_3:52707913-52707932 Msa1294790:CDS 40.0%
GAGCATTCAACCACATGTTA+TGG - chr8_3:52708057-52708076 None:intergenic 40.0%
TGATCTTGTGACTCTTCTTG+CGG - chr8_3:52706487-52706506 None:intergenic 40.0%
TTCAGGGAAGATCGAAGATT+CGG + chr8_3:52706783-52706802 Msa1294790:intron 40.0%
! AGTGAAGACCCTTTTGCAAA+AGG + chr8_3:52707008-52707027 Msa1294790:CDS 40.0%
GTGAACATTGGAGATTTGAG+GGG - chr8_3:52707136-52707155 None:intergenic 40.0%
TGAAAACTCAGTGAAACCAG+TGG - chr8_3:52707166-52707185 None:intergenic 40.0%
TCAAGAACAACTCATTCCTC+AGG + chr8_3:52707200-52707219 Msa1294790:CDS 40.0%
TCAGAGAAATCTAACAGCAG+TGG - chr8_3:52707500-52707519 None:intergenic 40.0%
! GGTTACAGAAGACTCTAAGA+TGG + chr8_3:52707529-52707548 Msa1294790:CDS 40.0%
AGATGATGAGGAAATAGCTG+AGG + chr8_3:52707622-52707641 Msa1294790:CDS 40.0%
TGAGGAGGATGATTACTATG+AGG + chr8_3:52707655-52707674 Msa1294790:CDS 40.0%
GAGGAGGATGATTACTATGA+GGG + chr8_3:52707656-52707675 Msa1294790:CDS 40.0%
! GAAGAAGAAGAGTATGCTGA+TGG + chr8_3:52707686-52707705 Msa1294790:CDS 40.0%
! AAGAAGAGTATGCTGATGGA+GGG + chr8_3:52707690-52707709 Msa1294790:CDS 40.0%
GTTACTTGATGAACTGTGTG+AGG + chr8_3:52707715-52707734 Msa1294790:CDS 40.0%
AGCAACATAGGTGTGAATGA+AGG + chr8_3:52707743-52707762 Msa1294790:CDS 40.0%
AGGTGTGAATGAAGGAAATG+TGG + chr8_3:52707751-52707770 Msa1294790:CDS 40.0%
AATGTGGTTCCAAAGTTTGC+TGG + chr8_3:52707767-52707786 Msa1294790:CDS 40.0%
! ATGTGGTTCCAAAGTTTGCT+GGG + chr8_3:52707768-52707787 Msa1294790:CDS 40.0%
GTATGTTTCCCAGCAAACTT+TGG - chr8_3:52707779-52707798 None:intergenic 40.0%
TGAAGATGAGATTGTGGAAG+AGG + chr8_3:52707820-52707839 Msa1294790:CDS 40.0%
!! GCATATTCGTTTTTCTGAGG+AGG + chr8_3:52707913-52707932 Msa1294790:CDS 40.0%
GAGCATTCAACCACATGTTA+TGG - chr8_3:52708057-52708076 None:intergenic 40.0%
AAAGGGACAAGCACAACAAC+AGG + chr8_3:52706834-52706853 Msa1294790:CDS 45.0%
GACAAGCACAACAACAGGAT+CGG + chr8_3:52706839-52706858 Msa1294790:CDS 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_3:52706880-52706899 Msa1294790:CDS 45.0%
! TGTCGAGTATTGCGAAGCAA+AGG + chr8_3:52706932-52706951 Msa1294790:CDS 45.0%
! GTCGAGTATTGCGAAGCAAA+GGG + chr8_3:52706933-52706952 Msa1294790:CDS 45.0%
! TCGAGTATTGCGAAGCAAAG+GGG + chr8_3:52706934-52706953 Msa1294790:CDS 45.0%
!! TTCTGGTGAGGCTTTGTTGA+GGG + chr8_3:52706981-52707000 Msa1294790:CDS 45.0%
AGTGGCAGTGTTGTGAACAT+TGG - chr8_3:52707148-52707167 None:intergenic 45.0%
AATGTTCACAACACTGCCAC+TGG + chr8_3:52707147-52707166 Msa1294790:CDS 45.0%
ACAAGACTGTGACAAACCTG+AGG - chr8_3:52707219-52707238 None:intergenic 45.0%
GGAATCACCATCATCTTCTG+TGG - chr8_3:52707558-52707577 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_3:52707637-52707656 Msa1294790:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_3:52707640-52707659 Msa1294790:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_3:52707689-52707708 Msa1294790:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_3:52707731-52707750 Msa1294790:CDS 45.0%
ACCTGAATGGAGTTAGTGCT+AGG + chr8_3:52708030-52708049 Msa1294790:three_prime_UTR 45.0%
TCCTAGCACTAACTCCATTC+AGG - chr8_3:52708034-52708053 None:intergenic 45.0%
AGTGCTAGGACCATAACATG+TGG + chr8_3:52708044-52708063 Msa1294790:three_prime_UTR 45.0%
AAAGGGACAAGCACAACAAC+AGG + chr8_3:52706834-52706853 Msa1294790:CDS 45.0%
GACAAGCACAACAACAGGAT+CGG + chr8_3:52706839-52706858 Msa1294790:CDS 45.0%
TCCAATGATTCTCCCATCGT+TGG + chr8_3:52706880-52706899 Msa1294790:CDS 45.0%
! TGTCGAGTATTGCGAAGCAA+AGG + chr8_3:52706932-52706951 Msa1294790:CDS 45.0%
! GTCGAGTATTGCGAAGCAAA+GGG + chr8_3:52706933-52706952 Msa1294790:CDS 45.0%
! TCGAGTATTGCGAAGCAAAG+GGG + chr8_3:52706934-52706953 Msa1294790:CDS 45.0%
!! TTCTGGTGAGGCTTTGTTGA+GGG + chr8_3:52706981-52707000 Msa1294790:CDS 45.0%
AGTGGCAGTGTTGTGAACAT+TGG - chr8_3:52707148-52707167 None:intergenic 45.0%
AATGTTCACAACACTGCCAC+TGG + chr8_3:52707147-52707166 Msa1294790:CDS 45.0%
ACAAGACTGTGACAAACCTG+AGG - chr8_3:52707219-52707238 None:intergenic 45.0%
GGAATCACCATCATCTTCTG+TGG - chr8_3:52707558-52707577 None:intergenic 45.0%
AGCTGAGGTAGAAGAAGATG+AGG + chr8_3:52707637-52707656 Msa1294790:CDS 45.0%
TGAGGTAGAAGAAGATGAGG+AGG + chr8_3:52707640-52707659 Msa1294790:CDS 45.0%
! GAAGAAGAGTATGCTGATGG+AGG + chr8_3:52707689-52707708 Msa1294790:CDS 45.0%
TGTGAGGGTTTGAGCAACAT+AGG + chr8_3:52707731-52707750 Msa1294790:CDS 45.0%
ACCTGAATGGAGTTAGTGCT+AGG + chr8_3:52708030-52708049 Msa1294790:three_prime_UTR 45.0%
TCCTAGCACTAACTCCATTC+AGG - chr8_3:52708034-52708053 None:intergenic 45.0%
AGTGCTAGGACCATAACATG+TGG + chr8_3:52708044-52708063 Msa1294790:three_prime_UTR 45.0%
ACTCTTCTTGCGGTGGATGA+AGG - chr8_3:52706477-52706496 None:intergenic 50.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_3:52706484-52706503 None:intergenic 50.0%
AGATGGGATGTTGTTGACGC+TGG - chr8_3:52706532-52706551 None:intergenic 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_3:52706884-52706903 None:intergenic 50.0%
TCTCGATCTCACCATTCGCA+AGG - chr8_3:52706906-52706925 None:intergenic 50.0%
TGCTTCGCAATACTCGACAG+AGG - chr8_3:52706931-52706950 None:intergenic 50.0%
AACCTGGAGTCTTCTTCACC+CGG - chr8_3:52706963-52706982 None:intergenic 50.0%
GTGAAGAAGACTCCAGGTTC+TGG + chr8_3:52706964-52706983 Msa1294790:CDS 50.0%
AACAAAGCCTCACCAGAACC+TGG - chr8_3:52706979-52706998 None:intergenic 50.0%
!! GTTCTGGTGAGGCTTTGTTG+AGG + chr8_3:52706980-52706999 Msa1294790:CDS 50.0%
!! TCTGGTGAGGCTTTGTTGAG+GGG + chr8_3:52706982-52707001 Msa1294790:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_3:52707102-52707121 None:intergenic 50.0%
!! GAGATTTGAGGGGTGTTTGC+AGG - chr8_3:52707126-52707145 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_3:52707548-52707567 Msa1294790:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_3:52707887-52707906 Msa1294790:CDS 50.0%
ACTCTTCTTGCGGTGGATGA+AGG - chr8_3:52706477-52706496 None:intergenic 50.0%
TCTTGTGACTCTTCTTGCGG+TGG - chr8_3:52706484-52706503 None:intergenic 50.0%
AGATGGGATGTTGTTGACGC+TGG - chr8_3:52706532-52706551 None:intergenic 50.0%
GCCAACGATGGGAGAATCAT+TGG - chr8_3:52706884-52706903 None:intergenic 50.0%
TCTCGATCTCACCATTCGCA+AGG - chr8_3:52706906-52706925 None:intergenic 50.0%
TGCTTCGCAATACTCGACAG+AGG - chr8_3:52706931-52706950 None:intergenic 50.0%
AACCTGGAGTCTTCTTCACC+CGG - chr8_3:52706963-52706982 None:intergenic 50.0%
GTGAAGAAGACTCCAGGTTC+TGG + chr8_3:52706964-52706983 Msa1294790:CDS 50.0%
AACAAAGCCTCACCAGAACC+TGG - chr8_3:52706979-52706998 None:intergenic 50.0%
!! GTTCTGGTGAGGCTTTGTTG+AGG + chr8_3:52706980-52706999 Msa1294790:CDS 50.0%
!! TCTGGTGAGGCTTTGTTGAG+GGG + chr8_3:52706982-52707001 Msa1294790:CDS 50.0%
GTTGGGGCAAGAAGTTGCAT+TGG - chr8_3:52707102-52707121 None:intergenic 50.0%
!! GAGATTTGAGGGGTGTTTGC+AGG - chr8_3:52707126-52707145 None:intergenic 50.0%
ATGGGGTCCACAGAAGATGA+TGG + chr8_3:52707548-52707567 Msa1294790:CDS 50.0%
AAGGGGTTGCCAACTCCAAA+AGG + chr8_3:52707887-52707906 Msa1294790:CDS 50.0%
GTTGACGCTGGAAGCAGTCA+AGG - chr8_3:52706520-52706539 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_3:52706895-52706914 None:intergenic 55.0%
ACCATTCGCAAGGCCAACGA+TGG - chr8_3:52706896-52706915 None:intergenic 55.0%
TTGCGAAGCAAAGGGGAAGC+CGG + chr8_3:52706941-52706960 Msa1294790:CDS 55.0%
! GAAGACTCCAGGTTCTGGTG+AGG + chr8_3:52706969-52706988 Msa1294790:CDS 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_3:52707118-52707137 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_3:52707119-52707138 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_3:52707120-52707139 None:intergenic 55.0%
GTTGACGCTGGAAGCAGTCA+AGG - chr8_3:52706520-52706539 None:intergenic 55.0%
CCATTCGCAAGGCCAACGAT+GGG - chr8_3:52706895-52706914 None:intergenic 55.0%
ACCATTCGCAAGGCCAACGA+TGG - chr8_3:52706896-52706915 None:intergenic 55.0%
TTGCGAAGCAAAGGGGAAGC+CGG + chr8_3:52706941-52706960 Msa1294790:CDS 55.0%
! GAAGACTCCAGGTTCTGGTG+AGG + chr8_3:52706969-52706988 Msa1294790:CDS 55.0%
!! AGGGGTGTTTGCAGGAGTTG+GGG - chr8_3:52707118-52707137 None:intergenic 55.0%
!! GAGGGGTGTTTGCAGGAGTT+GGG - chr8_3:52707119-52707138 None:intergenic 55.0%
!! TGAGGGGTGTTTGCAGGAGT+TGG - chr8_3:52707120-52707139 None:intergenic 55.0%
GACGCTGGAAGCAGTCAAGG+TGG - chr8_3:52706517-52706536 None:intergenic 60.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_3:52706892-52706911 Msa1294790:CDS 60.0%
TGCGAAGCAAAGGGGAAGCC+GGG + chr8_3:52706942-52706961 Msa1294790:CDS 60.0%
AGCCGGGTGAAGAAGACTCC+AGG + chr8_3:52706958-52706977 Msa1294790:CDS 60.0%
GACGCTGGAAGCAGTCAAGG+TGG - chr8_3:52706517-52706536 None:intergenic 60.0%
!! CCCATCGTTGGCCTTGCGAA+TGG + chr8_3:52706892-52706911 Msa1294790:CDS 60.0%
TGCGAAGCAAAGGGGAAGCC+GGG + chr8_3:52706942-52706961 Msa1294790:CDS 60.0%
AGCCGGGTGAAGAAGACTCC+AGG + chr8_3:52706958-52706977 Msa1294790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52706385 52708238 52706385 ID=Msa1294790;Name=Msa1294790
chr8_3 mRNA 52706385 52708238 52706385 ID=Msa1294790-mRNA-1;Parent=Msa1294790;Name=Msa1294790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=80|1|1|1|1|1|3|283|342
chr8_3 exon 52706385 52706555 52706385 ID=Msa1294790-mRNA-1:exon:14969;Parent=Msa1294790-mRNA-1
chr8_3 exon 52706788 52707221 52706788 ID=Msa1294790-mRNA-1:exon:14970;Parent=Msa1294790-mRNA-1
chr8_3 exon 52707452 52708238 52707452 ID=Msa1294790-mRNA-1:exon:14971;Parent=Msa1294790-mRNA-1
chr8_3 five_prime_UTR 52706385 52706464 52706385 ID=Msa1294790-mRNA-1:five_prime_utr;Parent=Msa1294790-mRNA-1
chr8_3 CDS 52706465 52706555 52706465 ID=Msa1294790-mRNA-1:cds;Parent=Msa1294790-mRNA-1
chr8_3 CDS 52706788 52707221 52706788 ID=Msa1294790-mRNA-1:cds;Parent=Msa1294790-mRNA-1
chr8_3 CDS 52707452 52707955 52707452 ID=Msa1294790-mRNA-1:cds;Parent=Msa1294790-mRNA-1
chr8_3 three_prime_UTR 52707956 52708238 52707956 ID=Msa1294790-mRNA-1:three_prime_utr;Parent=Msa1294790-mRNA-1
Gene Sequence

>Msa1294790

ATGGAGACTCCTTCATCCACCGCAAGAAGAGTCACAAGATCACAAACAACCACCTTGACTGCTTCCAGCGTCAACAACATCCCATCTTCAAGGAAGATCGAAGATTCGGAAAAGAATGCTTCGAAATCAAGACAAAGAAAGGGACAAGCACAACAACAGGATCGGTGTGCACTGATCGACATATCCAATGATTCTCCCATCGTTGGCCTTGCGAATGGTGAGATCGAGACACCTCTGTCGAGTATTGCGAAGCAAAGGGGAAGCCGGGTGAAGAAGACTCCAGGTTCTGGTGAGGCTTTGTTGAGGGGTCAAGTGAAGACCCTTTTGCAAAAGGTTGAAGAAGAAGCTGAGATTTCTAAACTGACAATGGATGTTCGTCCTTTTCTTCAATTTGTTAACTCTCCAATGCAACTTCTTGCCCCAACTCCTGCAAACACCCCTCAAATCTCCAATGTTCACAACACTGCCACTGGTTTCACTGAGTTTTCACCTTCTTCTGTTGTTCAAGAACAACTCATTCCTCAGGTGCTGAATCAAGAGAATGTTGAATCTGAAAAGAATGTGCTAAGTCCACTGCTGTTAGATTTCTCTGACAAATCTGAGGTTACAGAAGACTCTAAGATGGGGTCCACAGAAGATGATGGTGATTCCATTTGGTCAATTCAAGTCAATGCAAGCACACATGATGATGATGAAGATGATGAGGAAATAGCTGAGGTAGAAGAAGATGAGGAGGATGATTACTATGAGGGTGTTGAAGAAGAAGAAGAGTATGCTGATGGAGGGTTGTTACTTGATGAACTGTGTGAGGGTTTGAGCAACATAGGTGTGAATGAAGGAAATGTGGTTCCAAAGTTTGCTGGGAAACATACAAGATTTTTGTATGATAGTGATGAAGATGAGATTGTGGAAGAGGTTGTTGAAGAATCTGCTGATTCTAACTCTGAGATTTTGCATTTGAAGGGGTTGCCAACTCCAAAAGGAAAGCATATTCGTTTTTCTGAGGAGGAAGAAAAATCTGATCTGTGA

Protein sequence

>Msa1294790

METPSSTARRVTRSQTTTLTASSVNNIPSSRKIEDSEKNASKSRQRKGQAQQQDRCALIDISNDSPIVGLANGEIETPLSSIAKQRGSRVKKTPGSGEALLRGQVKTLLQKVEEEAEISKLTMDVRPFLQFVNSPMQLLAPTPANTPQISNVHNTATGFTEFSPSSVVQEQLIPQVLNQENVESEKNVLSPLLLDFSDKSEVTEDSKMGSTEDDGDSIWSIQVNASTHDDDEDDEEIAEVEEDEEDDYYEGVEEEEEYADGGLLLDELCEGLSNIGVNEGNVVPKFAGKHTRFLYDSDEDEIVEEVVEESADSNSEILHLKGLPTPKGKHIRFSEEEEKSDL*