AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076710 MtrunA17_Chr1g0185871 97.331 637 17 0 1 637 335 971 0.0 1303
Msa0076710 MtrunA17_Chr0c12g0493661 51.050 619 253 8 1 609 325 903 0.0 611
Msa0076710 MtrunA17_Chr4g0076991 45.941 542 226 10 1 532 306 790 2.46e-148 449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076710 AT3G24180.1 69.559 657 168 5 1 657 326 950 0.0 906
Msa0076710 AT3G24180.2 69.559 657 168 5 1 657 326 950 0.0 906
Msa0076710 AT5G49900.2 52.520 615 245 6 1 606 55 631 0.0 622
Msa0076710 AT5G49900.3 52.520 615 245 6 1 606 317 893 0.0 620
Msa0076710 AT5G49900.1 52.520 615 245 6 1 606 317 893 0.0 620
Msa0076710 AT1G33700.3 49.589 609 271 6 1 609 316 888 0.0 593
Msa0076710 AT1G33700.1 49.589 609 271 6 1 609 316 888 0.0 593
Msa0076710 AT1G33700.2 49.589 609 271 6 1 609 316 888 0.0 593
Msa0076710 AT1G33700.4 48.427 572 259 6 1 572 316 851 0.0 541
Msa0076710 AT4G10060.1 57.713 376 158 1 231 606 484 858 1.32e-140 433
Msa0076710 AT4G10060.1 46.203 158 77 3 1 153 311 465 6.63e-35 142
Msa0076710 AT4G10060.2 57.713 376 158 1 231 606 484 858 1.32e-140 433
Msa0076710 AT4G10060.2 46.203 158 77 3 1 153 311 465 6.63e-35 142

Find 225 sgRNAs with CRISPR-Local

Find 674 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACCTGAAGTACAAATTT+TGG 0.115897 1_2:-52995279 None:intergenic
ACATGAGGCCACTGTCAATT+TGG 0.167305 1_2:+52996448 Msa0076710:CDS
TGGGGAACTCGTAAGGTTTA+TGG 0.186018 1_2:+52995165 Msa0076710:CDS
TGGGGCTGTCCCACATGATT+TGG 0.240059 1_2:+52995185 Msa0076710:CDS
GGGGCTGTCCCACATGATTT+GGG 0.240329 1_2:+52995186 Msa0076710:CDS
GATCGGGAAAATTTCTCTTC+TGG 0.243513 1_2:+52993166 Msa0076710:CDS
GCAACAGGTGATTTGCAATT+TGG 0.258666 1_2:+52995315 Msa0076710:CDS
TAGAATATATCTTGGGATTT+GGG 0.266914 1_2:-52996855 None:intergenic
TTAGAATATATCTTGGGATT+TGG 0.269030 1_2:-52996856 None:intergenic
GTGCTTACTGTGGTGGTCTT+TGG 0.276640 1_2:+52995469 Msa0076710:CDS
TTCAATGTGATGAAAGTTAA+AGG 0.285157 1_2:+52995765 Msa0076710:CDS
TGGAAGGAGAGTAAAGTTTC+TGG 0.290455 1_2:+52995131 Msa0076710:CDS
AGTTTCTGGCAGAGGGAAAC+TGG 0.296329 1_2:+52995145 Msa0076710:CDS
CATGAGGCCACTGTCAATTT+GGG 0.306263 1_2:+52996449 Msa0076710:CDS
CCACTTTAGCTTCAGTTATT+CGG 0.312015 1_2:-52994747 None:intergenic
TCCAGGTGATGAGGGCATGC+TGG 0.316468 1_2:-52993191 None:intergenic
TTACCGCCCAAGTAAATAAA+AGG 0.316621 1_2:-52990665 None:intergenic
GGGGAACTCGTAAGGTTTAT+GGG 0.328245 1_2:+52995166 Msa0076710:CDS
TTATGTAATCCTCCTCTAAC+AGG 0.337687 1_2:-52996552 None:intergenic
AGAGATACATCCCATGAATA+TGG 0.344504 1_2:+52994865 Msa0076710:CDS
GGCCCCTAAAATTAACTTCA+TGG 0.344736 1_2:+52996512 Msa0076710:CDS
AAAAGGAATGTGGACTAAAA+TGG 0.348084 1_2:+52992995 Msa0076710:exon
TCATGGGGATGGAATCTAAA+TGG 0.351315 1_2:+52989550 Msa0076710:five_prime_UTR
GAACTCTACTTTCTTGTTGC+TGG 0.357509 1_2:+52994506 Msa0076710:CDS
TAAACTAAGAATTACCATTC+TGG 0.363223 1_2:-52993875 None:intergenic
AACCGTCATATATAGCTATA+AGG 0.379301 1_2:-52990985 None:intergenic
CCTTTCACAAACTTCACTTT+CGG 0.380322 1_2:-52993301 None:intergenic
GGGGCCTCAAGTACTGCCTT+TGG 0.382148 1_2:-52996495 None:intergenic
CATGTATCATATGTTTGATC+AGG 0.387198 1_2:-52995429 None:intergenic
GATCTTGTGCAGAATTCTAT+TGG 0.388602 1_2:+52990765 Msa0076710:intron
TATTCACGGTTCCATATTCA+TGG 0.391907 1_2:-52994876 None:intergenic
AGGGGTTCCACTTGGAGGGA+TGG 0.398673 1_2:+52987251 Msa0076710:five_prime_UTR
GTATGCAGTCTCGAGAGATA+TGG 0.400049 1_2:+52995844 Msa0076710:CDS
CCAGGTGATGAGGGCATGCT+GGG 0.407317 1_2:-52993190 None:intergenic
TAGCAGGAAAGCTGATGATC+AGG 0.407661 1_2:+52989519 Msa0076710:five_prime_UTR
GATGAATTTAGAATATATCT+TGG 0.410388 1_2:-52996863 None:intergenic
CCGAATAACTGAAGCTAAAG+TGG 0.411606 1_2:+52994747 Msa0076710:CDS
AGCTTCTCTACGAGAGTGTT+GGG 0.413362 1_2:-52996707 None:intergenic
TGTAATTATGTGGTATGAAA+GGG 0.414470 1_2:-52989752 None:intergenic
ATCCACCTATCTCCTGTTAG+AGG 0.417590 1_2:+52996540 Msa0076710:CDS
CCCAGCATGCCCTCATCACC+TGG 0.423292 1_2:+52993190 Msa0076710:CDS
AGCCAATTGATCGGCTTGAA+TGG 0.427786 1_2:-52995658 None:intergenic
TCCGTTTCTGAGAGTATTCA+CGG 0.428112 1_2:-52994890 None:intergenic
GAACCCAAAATTTGTACTTC+AGG 0.429676 1_2:+52995275 Msa0076710:CDS
GGGGTTCCACTTGGAGGGAT+GGG 0.431136 1_2:+52987252 Msa0076710:five_prime_UTR
ATCCATTCAAGCCGATCAAT+TGG 0.432522 1_2:+52995656 Msa0076710:CDS
ATGGCAGGATCCTATTCTTA+AGG 0.433320 1_2:+52993841 Msa0076710:CDS
AGACAATGGCAAATCATTCC+TGG 0.434302 1_2:+52987498 Msa0076710:five_prime_UTR
GGAGGATTACATAAAGAAAC+AGG 0.434463 1_2:+52996561 Msa0076710:CDS
AGAGCTGAAGATGGCGTCTC+CGG 0.438417 1_2:+52990931 Msa0076710:intron
TGAAAGGCAGCACTTTCAAC+AGG 0.441957 1_2:+52993317 Msa0076710:CDS
ATGCTTTGTTTCCAAGAGCT+TGG 0.444285 1_2:+52989590 Msa0076710:five_prime_UTR
TGCTGTTTCAGCTTCCGCAT+GGG 0.448130 1_2:+52993228 Msa0076710:CDS
CTATGATTCTACTGCTCCTA+GGG 0.448143 1_2:+52994813 Msa0076710:CDS
CCTATGATTCTACTGCTCCT+AGG 0.449205 1_2:+52994812 Msa0076710:CDS
TTGTTGCTGGAGGAACAATC+TGG 0.450450 1_2:+52994519 Msa0076710:CDS
AGCATATCAAGAGGATTTAG+AGG 0.452153 1_2:+52987468 Msa0076710:five_prime_UTR
CAATGGTATACAGCATCCTC+AGG 0.452922 1_2:+52995684 Msa0076710:CDS
ATGAATTTAGAATATATCTT+GGG 0.454196 1_2:-52996862 None:intergenic
AAATGAGACTTACAGAGAAC+TGG 0.459619 1_2:-52987551 None:intergenic
CGAAGTAGCGTAACAGCAAA+AGG 0.462013 1_2:+52992978 Msa0076710:five_prime_UTR
TCCATTGCAGCTCGGACAGC+AGG 0.462620 1_2:-52995351 None:intergenic
CTGCTGTTTCAGCTTCCGCA+TGG 0.463351 1_2:+52993227 Msa0076710:CDS
TGGTGGAAGGTTCTTGTACT+TGG 0.463613 1_2:+52994978 Msa0076710:CDS
TGCTGTTACGCTACTTCGGT+CGG 0.464082 1_2:-52992973 None:intergenic
TCATAAACAGTCCAAGCTCT+TGG 0.465016 1_2:-52989601 None:intergenic
GCTGCAACAATGATACTTGC+AGG 0.465363 1_2:+52995888 Msa0076710:CDS
GCCTGCTGTCCGAGCTGCAA+TGG 0.466643 1_2:+52995350 Msa0076710:CDS
TGAGAGAGCTGCAGTGCACC+TGG 0.469761 1_2:+52993607 Msa0076710:CDS
TAAGGATGGGCAATTTGATC+GGG 0.470665 1_2:+52993150 Msa0076710:intron
GGGTTCCACTTGGAGGGATG+GGG 0.471807 1_2:+52987253 Msa0076710:five_prime_UTR
CTGTAATTATGTGGTATGAA+AGG 0.472855 1_2:-52989753 None:intergenic
CCAGAGGCATTTACAATTGA+CGG 0.473164 1_2:+52996405 Msa0076710:CDS
CAAGCTGTCCTGTGTGAAGA+TGG 0.475037 1_2:+52995111 Msa0076710:CDS
ATTCAAGCCGATCAATTGGC+TGG 0.479609 1_2:+52995660 Msa0076710:CDS
CTGCTTTCTCTGTAATTATG+TGG 0.483079 1_2:-52989762 None:intergenic
AAAGTTAAAGGCGGCAGAAT+GGG 0.484438 1_2:+52995777 Msa0076710:CDS
TAAGCATTCATTTCATGCCA+TGG 0.484899 1_2:-52995219 None:intergenic
ACAGTGGCCTCATGTATATG+AGG 0.485361 1_2:-52996440 None:intergenic
CCTAGGAGCAGTAGAATCAT+AGG 0.487066 1_2:-52994812 None:intergenic
TATGCAGTCTCGAGAGATAT+GGG 0.488836 1_2:+52995845 Msa0076710:CDS
GGTGGGAACTCTCACTTGTC+AGG 0.489914 1_2:+52990786 Msa0076710:five_prime_UTR
TTCATTCACAGAGCTGAAGA+TGG 0.492280 1_2:+52990922 Msa0076710:intron
ATCTCTGTCACCTAGTTGAA+TGG 0.494181 1_2:-52995523 None:intergenic
TCTCAAGGGGTTCCACTTGG+AGG 0.494410 1_2:+52987246 Msa0076710:five_prime_UTR
TTAAGGATGGGCAATTTGAT+CGG 0.495077 1_2:+52993149 Msa0076710:intron
CCGAGCTGCAATGGAGTACA+TGG 0.495164 1_2:+52995359 Msa0076710:CDS
TCTTCAAGCTGCAGCTGCAA+TGG 0.499649 1_2:+52995500 Msa0076710:CDS
GGGAAGAAGAGATTGCAAAA+TGG 0.500460 1_2:+52993822 Msa0076710:CDS
CCGTCAATTGTAAATGCCTC+TGG 0.500631 1_2:-52996405 None:intergenic
CAGCTTCTCTACGAGAGTGT+TGG 0.501196 1_2:-52996708 None:intergenic
AGCTTCTCATCCTTAAGAAT+AGG 0.503401 1_2:-52993851 None:intergenic
ATGATCAGGGTATATCATCA+TGG 0.507713 1_2:+52989533 Msa0076710:five_prime_UTR
GGCAGAATGGGTGCTGTGAA+TGG 0.507901 1_2:+52995789 Msa0076710:CDS
TTGCAACTTTCTCGAGTGAA+AGG 0.510427 1_2:-52987213 None:intergenic
GTTTCATCCACCTTACCGTT+GGG 0.511276 1_2:-52995819 None:intergenic
GAGAACTGGTTGGCCATGAC+AGG 0.513003 1_2:-52987537 None:intergenic
ATCCTCCTCTAACAGGAGAT+AGG 0.513477 1_2:-52996545 None:intergenic
GATGGTCTTATTGAGAATGA+TGG 0.516775 1_2:+52995402 Msa0076710:CDS
CTGATCAAACATATGATACA+TGG 0.520231 1_2:+52995430 Msa0076710:CDS
GGCTGGTCAGAAGAAGGATA+CGG 0.520711 1_2:+52995957 Msa0076710:CDS
CTCTACTTTCTTGTTGCTGG+AGG 0.522845 1_2:+52994509 Msa0076710:CDS
GTGTCAATGCATCATGAGCC+AGG 0.526121 1_2:-52993625 None:intergenic
GAAAGTTAAAGGCGGCAGAA+TGG 0.527675 1_2:+52995776 Msa0076710:CDS
ACCGTGAATACTCTCAGAAA+CGG 0.528941 1_2:+52994889 Msa0076710:CDS
CATGAATTAATTATTTCAGA+AGG 0.529316 1_2:+52996942 Msa0076710:three_prime_UTR
TGCAATTTGGTGTCGATGTG+TGG 0.529941 1_2:+52995328 Msa0076710:CDS
TCAAGATCAAAAGTTCTCTC+CGG 0.530516 1_2:+52995730 Msa0076710:CDS
AAAATGGTGGTCAAGGGCCG+GGG 0.531144 1_2:+52996734 Msa0076710:three_prime_UTR
GGTTTCATCCACCTTACCGT+TGG 0.531435 1_2:-52995820 None:intergenic
CAGAGGCATTTACAATTGAC+GGG 0.533907 1_2:+52996406 Msa0076710:CDS
GCATCTCAAGGGGTTCCACT+TGG 0.534772 1_2:+52987243 Msa0076710:five_prime_UTR
CTGTTGCATTTAGTCTTGCA+TGG 0.535873 1_2:+52993272 Msa0076710:CDS
CTAGCAGGCTGGTCAGAAGA+AGG 0.537501 1_2:+52995951 Msa0076710:CDS
TGATCAGGGTATATCATCAT+GGG 0.539292 1_2:+52989534 Msa0076710:five_prime_UTR
GTTTCTGGCAGAGGGAAACT+GGG 0.542995 1_2:+52995146 Msa0076710:CDS
GCTGAGGGTATATTTCTAGC+AGG 0.543807 1_2:+52995936 Msa0076710:CDS
TTACAATTGACGGGCACTAT+CGG 0.545338 1_2:+52996415 Msa0076710:CDS
GAGAGTAAAGTTTCTGGCAG+AGG 0.545432 1_2:+52995137 Msa0076710:CDS
GGAAGGTTCTTGTACTTGGA+AGG 0.545489 1_2:+52994982 Msa0076710:CDS
AACAATGATACTTGCAGGAA+TGG 0.546051 1_2:+52995893 Msa0076710:CDS
TGCAAGCCATCTGCATCTCA+AGG 0.547185 1_2:+52987231 Msa0076710:five_prime_UTR
AGAAGAGATTGCAAAATGGC+AGG 0.552563 1_2:+52993826 Msa0076710:CDS
AGGGTATATCATCATGGGGA+TGG 0.552996 1_2:+52989539 Msa0076710:five_prime_UTR
AGAGCTTGGACTGTTTATGA+TGG 0.553201 1_2:+52989604 Msa0076710:five_prime_UTR
GGGAAACTGGGGAACTCGTA+AGG 0.554907 1_2:+52995158 Msa0076710:CDS
CTCAAGGGGTTCCACTTGGA+GGG 0.555712 1_2:+52987247 Msa0076710:five_prime_UTR
TAGTGTCTCTCCAGGTGATG+AGG 0.558574 1_2:-52993200 None:intergenic
CCGATCAATTGGCTGGGCAA+TGG 0.559132 1_2:+52995667 Msa0076710:CDS
ACATTCATGATACTAGTAAG+TGG 0.559226 1_2:+52995244 Msa0076710:CDS
AGGGTATATTTCTAGCAGGC+TGG 0.559806 1_2:+52995940 Msa0076710:CDS
CAGTCTCGAGAGATATGGGC+AGG 0.560172 1_2:+52995849 Msa0076710:CDS
TTGTGCAGAATTCTATTGGT+GGG 0.560692 1_2:+52990769 Msa0076710:intron
TATCTCTCGAGACTGCATAC+AGG 0.561033 1_2:-52995841 None:intergenic
TTCAAGCCGATCAATTGGCT+GGG 0.565771 1_2:+52995661 Msa0076710:CDS
GTTCTTGTACTTGGAAGGTG+TGG 0.567369 1_2:+52994987 Msa0076710:CDS
AGTGTCTCTCCAGGTGATGA+GGG 0.572454 1_2:-52993199 None:intergenic
CCATGTACTCCATTGCAGCT+CGG 0.573822 1_2:-52995359 None:intergenic
GCAGCACATAGTGTCTCTCC+AGG 0.574981 1_2:-52993208 None:intergenic
ATGTGAACCATCACCTGTCA+TGG 0.576503 1_2:+52987524 Msa0076710:five_prime_UTR
TGGCATGCATCCCAACGGTA+AGG 0.577901 1_2:+52995809 Msa0076710:CDS
CCATTGCCCAGCCAATTGAT+CGG 0.578065 1_2:-52995667 None:intergenic
ATTCACGGTTCCATATTCAT+GGG 0.579939 1_2:-52994875 None:intergenic
GCTGCAATGGCCATTCAACT+AGG 0.581074 1_2:+52995513 Msa0076710:CDS
CCGAAAGTGAAGTTTGTGAA+AGG 0.581461 1_2:+52993301 Msa0076710:CDS
GCAAGCCATCTGCATCTCAA+GGG 0.582594 1_2:+52987232 Msa0076710:five_prime_UTR
GATCAAAAGTTCTCTCCGGA+AGG 0.582612 1_2:+52995734 Msa0076710:CDS
TATGAACAAAAGCTGTGGAA+TGG 0.583308 1_2:+52995591 Msa0076710:CDS
CATGCATCCCAACGGTAAGG+TGG 0.585856 1_2:+52995812 Msa0076710:CDS
AGAGTAAAGTTTCTGGCAGA+GGG 0.586626 1_2:+52995138 Msa0076710:CDS
ACTCAAATGAATGTGGTGAA+TGG 0.588351 1_2:+52996912 Msa0076710:three_prime_UTR
CGGTCGGACAGCCCAAAACA+TGG 0.589504 1_2:-52992957 None:intergenic
ATGTATCATATGTTTGATCA+GGG 0.589770 1_2:-52995428 None:intergenic
GCTGGAGGAACAATCTGGAT+AGG 0.592481 1_2:+52994524 Msa0076710:CDS
TCCGCATGGGTGGAACCCCA+TGG 0.592731 1_2:+52993241 Msa0076710:CDS
TGTTTCAGCTTCCGCATGGG+TGG 0.593550 1_2:+52993231 Msa0076710:CDS
GAGGCCTTCACAACTGCTGA+GGG 0.595335 1_2:+52995921 Msa0076710:CDS
CGAAACAGATTATACACGGT+GGG 0.595689 1_2:+52993802 Msa0076710:intron
CATGATGATGATAATGATGA+TGG 0.598644 1_2:+52994958 Msa0076710:CDS
GATGATGATAATGATGATGG+TGG 0.599702 1_2:+52994961 Msa0076710:CDS
TATACCCTCAGCAGTTGTGA+AGG 0.600362 1_2:-52995925 None:intergenic
AAGCATGGTATGTTGAGTGC+TGG 0.600765 1_2:-52989573 None:intergenic
GCTGGTCAGAAGAAGGATAC+GGG 0.601383 1_2:+52995958 Msa0076710:CDS
ACTTGCAGGAATGGAAGAAG+AGG 0.601561 1_2:+52995902 Msa0076710:CDS
CACCTATCTCCTGTTAGAGG+AGG 0.602664 1_2:+52996543 Msa0076710:CDS
ATATGGGCAGGTGTGACCTA+CGG 0.602987 1_2:+52995861 Msa0076710:CDS
GCGTAACAGCAAAAGGAATG+TGG 0.603596 1_2:+52992985 Msa0076710:exon
CTCTCCTTCCATCTTCACAC+AGG 0.603646 1_2:-52995119 None:intergenic
ATGCAAAAGGAAGTTTCTGA+AGG 0.605176 1_2:+52995557 Msa0076710:CDS
ATTTGGGGACACATGATCCA+TGG 0.607898 1_2:+52995202 Msa0076710:CDS
CTCCTCTAACAGGAGATAGG+TGG 0.608598 1_2:-52996542 None:intergenic
AACCTTATAGCTATATATGA+CGG 0.608781 1_2:+52990983 Msa0076710:five_prime_UTR
GTAATTATGTGGTATGAAAG+GGG 0.610838 1_2:-52989751 None:intergenic
GGGTTAGTAACAGTGTGAAG+AGG 0.611676 1_2:-52996687 None:intergenic
TATGCCAAAGGCAGTACTTG+AGG 0.611801 1_2:+52996491 Msa0076710:CDS
AGCAGGAAAGCTGATGATCA+GGG 0.612348 1_2:+52989520 Msa0076710:five_prime_UTR
AGAGGCCTTCACAACTGCTG+AGG 0.613758 1_2:+52995920 Msa0076710:CDS
GGTGTGAGTGCTTACTGTGG+TGG 0.615502 1_2:+52995462 Msa0076710:CDS
TCCTAGGGGACATAGTCACT+TGG 0.616516 1_2:+52994828 Msa0076710:CDS
TCCAAGTGACTATGTCCCCT+AGG 0.619743 1_2:-52994829 None:intergenic
CACAGTAAGCACTCACACCA+TGG 0.625608 1_2:-52995458 None:intergenic
TGGTTGGCCATGACAGGTGA+TGG 0.630994 1_2:-52987531 None:intergenic
AGGATGAGAAGCTACCAGAA+TGG 0.634200 1_2:+52993861 Msa0076710:CDS
AATGTGGACTAAAATGGTGA+AGG 0.634442 1_2:+52993001 Msa0076710:exon
GGGCTGTCCCACATGATTTG+GGG 0.634911 1_2:+52995187 Msa0076710:CDS
CTGTCCTGTGTGAAGATGGA+AGG 0.636012 1_2:+52995115 Msa0076710:CDS
TATGATACATGGACTGTCCA+TGG 0.636500 1_2:+52995441 Msa0076710:CDS
CAAGCCATCTGCATCTCAAG+GGG 0.636690 1_2:+52987233 Msa0076710:five_prime_UTR
TGTATATTTAATTCAATACG+AGG 0.637943 1_2:-52995075 None:intergenic
ATGAGGCCACTGTCAATTTG+GGG 0.638419 1_2:+52996450 Msa0076710:CDS
GGAACCCCTTGAGATGCAGA+TGG 0.638569 1_2:-52987237 None:intergenic
CAGTGGCCTCATGTATATGA+GGG 0.643672 1_2:-52996439 None:intergenic
TCATACCCCATCCCTCCAAG+TGG 0.648533 1_2:-52987258 None:intergenic
CTTGTGCAGAATTCTATTGG+TGG 0.648579 1_2:+52990768 Msa0076710:intron
TCATGTGTCCCCAAATCATG+TGG 0.650108 1_2:-52995195 None:intergenic
ATATGCATTAACTATGCCAA+AGG 0.651288 1_2:+52996479 Msa0076710:CDS
AAGCTCTTGGAAACAAAGCA+TGG 0.652854 1_2:-52989588 None:intergenic
CATTGTTGCAGCAACACCGT+AGG 0.654279 1_2:-52995877 None:intergenic
ATGATAATGATGATGGTGGA+AGG 0.654300 1_2:+52994965 Msa0076710:CDS
CAATTCGATAGAGATGCTGA+TGG 0.661858 1_2:+52995384 Msa0076710:CDS
ATCGGTCCCTCATATACATG+AGG 0.664121 1_2:+52996433 Msa0076710:CDS
AGGAGTGGCAGCATATCAAG+AGG 0.664942 1_2:+52987459 Msa0076710:intron
GATTCGAAACAGATTATACA+CGG 0.665400 1_2:+52993798 Msa0076710:intron
TACAAGTTACAACTGAACCC+CGG 0.668319 1_2:-52996751 None:intergenic
GGGAACTCGTAAGGTTTATG+GGG 0.669077 1_2:+52995167 Msa0076710:CDS
TCCATGGGGTTCCACCCATG+CGG 0.669209 1_2:-52993242 None:intergenic
CAGTATATGAACAAAAGCTG+TGG 0.672417 1_2:+52995586 Msa0076710:CDS
TTAGAGGTGAATTCAGACAA+TGG 0.673231 1_2:+52987484 Msa0076710:five_prime_UTR
TATTGAAACTCAAATGAATG+TGG 0.676868 1_2:+52996905 Msa0076710:three_prime_UTR
AATGGTATACAGCATCCTCA+GGG 0.677357 1_2:+52995685 Msa0076710:CDS
CATGTGTCCCCAAATCATGT+GGG 0.677655 1_2:-52995194 None:intergenic
GATCAGGGTATATCATCATG+GGG 0.682964 1_2:+52989535 Msa0076710:five_prime_UTR
GAGACTTACAGAGAACTGGT+TGG 0.687892 1_2:-52987547 None:intergenic
GGTGATGGTTCACATAGACC+AGG 0.689207 1_2:-52987516 None:intergenic
TGCATGCCCCAAATTGACAG+TGG 0.696126 1_2:-52996456 None:intergenic
ATTGTTAACATGTAAGCACG+TGG 0.707750 1_2:+52996647 Msa0076710:exon
GTGAATGGCATGCATCCCAA+CGG 0.707804 1_2:+52995804 Msa0076710:CDS
CATGGTGTGAGTGCTTACTG+TGG 0.707900 1_2:+52995459 Msa0076710:CDS
CTTGTGATATAGAAGTACGC+CGG 0.716435 1_2:-52990950 None:intergenic
AATGTGATGAAAGTTAAAGG+CGG 0.717612 1_2:+52995768 Msa0076710:CDS
TTTCTGGCAGAGGGAAACTG+GGG 0.722226 1_2:+52995147 Msa0076710:CDS
TCGAAACAGATTATACACGG+TGG 0.737907 1_2:+52993801 Msa0076710:intron
TATGATTCTACTGCTCCTAG+GGG 0.747175 1_2:+52994814 Msa0076710:CDS
ATACTGGTTTCAGACTCCAG+AGG 0.761858 1_2:+52996389 Msa0076710:CDS
AAGGTGTGGAATATGTCATG+TGG 0.762463 1_2:+52995001 Msa0076710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCAGATATTTATAAT+TGG + chr1_2:52990718-52990737 Msa0076710:intron 10.0%
!! AATTAAAATTTATATTCTTC+AGG + chr1_2:52993664-52993683 Msa0076710:intron 10.0%
!! CTTAAAATAATAAATTAACT+GGG - chr1_2:52993960-52993979 None:intergenic 10.0%
!! TCTTAAAATAATAAATTAAC+TGG - chr1_2:52993961-52993980 None:intergenic 10.0%
!!! TTTTAAGAAATATCTTTTAA+TGG + chr1_2:52994328-52994347 Msa0076710:intron 10.0%
!!! ATTAATTGGAAGTTTTAAAT+TGG - chr1_2:52987290-52987309 None:intergenic 15.0%
!! AAATTATAATAAGACAATCA+AGG - chr1_2:52987675-52987694 None:intergenic 15.0%
!! TTTAAATAATTATAGTTCAG+AGG - chr1_2:52987888-52987907 None:intergenic 15.0%
!!! TTAATCAGTTTTAATTCAAT+TGG + chr1_2:52988174-52988193 Msa0076710:intron 15.0%
!! TTGTAATTACCTATAAAATT+TGG + chr1_2:52988866-52988885 Msa0076710:intron 15.0%
!!! TTTTCATTACCAAATTTTAT+AGG - chr1_2:52988878-52988897 None:intergenic 15.0%
!!! ATCTAGTTTTTATCATTTAA+TGG - chr1_2:52989395-52989414 None:intergenic 15.0%
!! ATTAAATGATAAAAACTAGA+TGG + chr1_2:52989394-52989413 Msa0076710:intron 15.0%
!!! ATATTATTTTATACAAAGTG+CGG + chr1_2:52989911-52989930 Msa0076710:intron 15.0%
!! AAAAAAGGAATTAAAATGTT+AGG - chr1_2:52990898-52990917 None:intergenic 15.0%
!!! CTTTTCATACTAAAAAAAAT+TGG - chr1_2:52993094-52993113 None:intergenic 15.0%
!! ATTGAAATTCTTGTATATTA+AGG + chr1_2:52993132-52993151 Msa0076710:intron 15.0%
!!! TATTTAAGATTTCTTTTTAC+AGG + chr1_2:52994462-52994481 Msa0076710:intron 15.0%
!! CCAAATAATTGAAATTTATT+GGG - chr1_2:52996209-52996228 None:intergenic 15.0%
!! ACCAAATAATTGAAATTTAT+TGG - chr1_2:52996210-52996229 None:intergenic 15.0%
!! TGCAAATTTATTATTTAACA+CGG + chr1_2:52996230-52996249 Msa0076710:intron 15.0%
!!! ATGATTTTTATTCAAATGAT+TGG + chr1_2:52996255-52996274 Msa0076710:intron 15.0%
!!! ATGAATTTAGAATATATCTT+GGG - chr1_2:52996865-52996884 None:intergenic 15.0%
!! TAAAACATTAACCATTTGAA+TGG - chr1_2:52987337-52987356 None:intergenic 20.0%
!! TTTACAAATACATTTATCCT+TGG + chr1_2:52987360-52987379 Msa0076710:intron 20.0%
!!! TACAAATGAGTATTTTATTC+TGG + chr1_2:52987980-52987999 Msa0076710:intron 20.0%
!!! GTTTTAATTCAATTGGATTT+CGG + chr1_2:52988181-52988200 Msa0076710:intron 20.0%
!! ATCAAGACAAAATTATCTAT+GGG + chr1_2:52988374-52988393 Msa0076710:intron 20.0%
!! AAATAATCCTCATAAATAGA+AGG - chr1_2:52988408-52988427 None:intergenic 20.0%
!!! TGATACTTATTTACTGTTTT+TGG + chr1_2:52988500-52988519 Msa0076710:intron 20.0%
!!! TTTTTGTAATAAGTGAAAAC+AGG - chr1_2:52988728-52988747 None:intergenic 20.0%
!! ATATTAAATGAAGATATTGC+AGG - chr1_2:52988940-52988959 None:intergenic 20.0%
!!! ACTACTTGAACTTTTTATTT+TGG - chr1_2:52989175-52989194 None:intergenic 20.0%
!! AATAAAAAGTTCAAGTAGTA+AGG + chr1_2:52989176-52989195 Msa0076710:intron 20.0%
!! ATAAAAAGTTCAAGTAGTAA+GGG + chr1_2:52989177-52989196 Msa0076710:intron 20.0%
!!! TGGATATAATTTTACGTAAA+TGG - chr1_2:52989375-52989394 None:intergenic 20.0%
!! TTTCCTTTACATGAAAAATT+GGG + chr1_2:52990065-52990084 Msa0076710:intron 20.0%
!! GTAATGAATTCTATAAAACA+TGG - chr1_2:52990287-52990306 None:intergenic 20.0%
!!! ATATTTGTTTCTTTTGTAGT+TGG + chr1_2:52990611-52990630 Msa0076710:intron 20.0%
!! CTGTGAATGAAAAATAAAAA+AGG - chr1_2:52990913-52990932 None:intergenic 20.0%
!!! TTGAAATTCCTATTTTTGAT+GGG + chr1_2:52991673-52991692 Msa0076710:intron 20.0%
!! TGTATAATGAGATATCTATT+CGG + chr1_2:52992338-52992357 Msa0076710:intron 20.0%
!! CTAATAGAAATGTTAATTCT+AGG - chr1_2:52992560-52992579 None:intergenic 20.0%
!! CTAGAATTAACATTTCTATT+AGG + chr1_2:52992558-52992577 Msa0076710:intron 20.0%
!! ATGAAAACAAACATACAATT+TGG + chr1_2:52992643-52992662 Msa0076710:intron 20.0%
!!! AAATAGTTTGTTTTGACTTT+GGG + chr1_2:52992666-52992685 Msa0076710:intron 20.0%
!!! GTAATCTTTCTAAAGAATTA+AGG + chr1_2:52992715-52992734 Msa0076710:intron 20.0%
!!! AGTATGTACATATTTGAAAT+TGG + chr1_2:52992785-52992804 Msa0076710:intron 20.0%
!! TCATACTAAAAAAAATTGGA+AGG - chr1_2:52993090-52993109 None:intergenic 20.0%
!!! TTTTAGTATGAAAAGTATAC+AGG + chr1_2:52993099-52993118 Msa0076710:intron 20.0%
!!! TTTAGTATGAAAAGTATACA+GGG + chr1_2:52993100-52993119 Msa0076710:intron 20.0%
!! AAATTCTTGTATATTAAGGA+TGG + chr1_2:52993136-52993155 Msa0076710:intron 20.0%
!! AATTCTTGTATATTAAGGAT+GGG + chr1_2:52993137-52993156 Msa0076710:intron 20.0%
!!! AAAATTTTAGCACATAACAA+TGG - chr1_2:52993346-52993365 None:intergenic 20.0%
!!! ATTGTTATGTGCTAAAATTT+TGG + chr1_2:52993345-52993364 Msa0076710:intron 20.0%
!!! TTGTTATGTGCTAAAATTTT+GGG + chr1_2:52993346-52993365 Msa0076710:intron 20.0%
!! TTTAACTACTATATCTAAAG+TGG + chr1_2:52993449-52993468 Msa0076710:intron 20.0%
!!! AGGAGATATACAAAATTTTA+TGG + chr1_2:52993578-52993597 Msa0076710:intron 20.0%
!!! GGAGATATACAAAATTTTAT+GGG + chr1_2:52993579-52993598 Msa0076710:intron 20.0%
!!! TTTTTAAATGCTACAGATAA+AGG - chr1_2:52993764-52993783 None:intergenic 20.0%
!! TGAATATAATGAAATCTGTA+TGG - chr1_2:52994122-52994141 None:intergenic 20.0%
!!! AATGTTTGTTTTATCATATC+AGG + chr1_2:52994592-52994611 Msa0076710:intron 20.0%
!!! TGATTTTCAAAAGACTAAAT+TGG - chr1_2:52994627-52994646 None:intergenic 20.0%
!! TGTATATTTAATTCAATACG+AGG - chr1_2:52995078-52995097 None:intergenic 20.0%
!! CCCAATAAATTTCAATTATT+TGG + chr1_2:52996206-52996225 Msa0076710:intron 20.0%
!! AATTAATTTCTTGATAGAGA+AGG - chr1_2:52996353-52996372 None:intergenic 20.0%
!!! GATGAATTTAGAATATATCT+TGG - chr1_2:52996866-52996885 None:intergenic 20.0%
!! CATGAATTAATTATTTCAGA+AGG + chr1_2:52996942-52996961 Msa0076710:three_prime_UTR 20.0%
! TCTAAAAATTAGACAGACAA+TGG + chr1_2:52988113-52988132 Msa0076710:intron 25.0%
! TTGTTATGGAAAAGGAAATA+TGG + chr1_2:52988144-52988163 Msa0076710:intron 25.0%
! GATCAAGACAAAATTATCTA+TGG + chr1_2:52988373-52988392 Msa0076710:intron 25.0%
!! CTATTTTCCTTCTATTTATG+AGG + chr1_2:52988398-52988417 Msa0076710:intron 25.0%
!!! ATGAGGATTATTTTATAAGC+TGG + chr1_2:52988415-52988434 Msa0076710:intron 25.0%
!!! TGAGGATTATTTTATAAGCT+GGG + chr1_2:52988416-52988435 Msa0076710:intron 25.0%
!!! TGTTTTTGGTCATTTATAAC+TGG + chr1_2:52988514-52988533 Msa0076710:intron 25.0%
!! AGGGTAAGAAAGAATAATTT+TGG + chr1_2:52988648-52988667 Msa0076710:intron 25.0%
! GTGCATATATATTCAAGTAT+AGG + chr1_2:52988816-52988835 Msa0076710:intron 25.0%
! TATTCAAGTATAGGAAAACA+AGG + chr1_2:52988825-52988844 Msa0076710:intron 25.0%
! AACATTTATTTGAACCAAAC+AGG + chr1_2:52988904-52988923 Msa0076710:intron 25.0%
! TAAAAAGTTCAAGTAGTAAG+GGG + chr1_2:52989178-52989197 Msa0076710:intron 25.0%
! TTGTCATTCTTTAATTCTGT+TGG + chr1_2:52989232-52989251 Msa0076710:intron 25.0%
!! GTTTCTAGATACATGAAAAA+TGG - chr1_2:52989456-52989475 None:intergenic 25.0%
! TGTATCTAGAAACTTATACA+TGG + chr1_2:52989463-52989482 Msa0076710:intron 25.0%
!!! ATTTTTGTTTCAGAATTAGC+AGG + chr1_2:52989503-52989522 Msa0076710:intron 25.0%
!!! GACATGATATTTTTAGTTCT+GGG - chr1_2:52989722-52989741 None:intergenic 25.0%
! CAGAACTAAAAATATCATGT+CGG + chr1_2:52989721-52989740 Msa0076710:five_prime_UTR 25.0%
! TGTAATTATGTGGTATGAAA+GGG - chr1_2:52989755-52989774 None:intergenic 25.0%
! TAAATTCATCTGTCAGAAAA+TGG + chr1_2:52989841-52989860 Msa0076710:intron 25.0%
!! AATATCCTCTTTTATTGAAC+TGG + chr1_2:52990018-52990037 Msa0076710:intron 25.0%
!! CAATTTTTCATGTAAAGGAA+AGG - chr1_2:52990066-52990085 None:intergenic 25.0%
! CTTTCCTTTACATGAAAAAT+TGG + chr1_2:52990064-52990083 Msa0076710:intron 25.0%
! CTTGCTCATTTATTAAATTG+AGG + chr1_2:52990190-52990209 Msa0076710:intron 25.0%
! ATAAAAGACATAACCATAGA+GGG - chr1_2:52990256-52990275 None:intergenic 25.0%
! AATAAAAGACATAACCATAG+AGG - chr1_2:52990257-52990276 None:intergenic 25.0%
! AATCACCATACATATATCAA+GGG - chr1_2:52990350-52990369 None:intergenic 25.0%
! TCTTTATTGTTTGTCATTGT+TGG + chr1_2:52990383-52990402 Msa0076710:intron 25.0%
! ATTACGAACCTAATTGAAAA+AGG - chr1_2:52990471-52990490 None:intergenic 25.0%
! TCAGATATTTATAATTGGCA+CGG + chr1_2:52990723-52990742 Msa0076710:intron 25.0%
! AACCTTATAGCTATATATGA+CGG + chr1_2:52990983-52991002 Msa0076710:five_prime_UTR 25.0%
!!! TTCTAGTTTATATCAAGTTC+AGG - chr1_2:52991115-52991134 None:intergenic 25.0%
! GTTTGTAAAAGGTTATGATA+TGG + chr1_2:52991283-52991302 Msa0076710:intron 25.0%
! ACTGTGTAATTAGTTACTAA+AGG + chr1_2:52991394-52991413 Msa0076710:intron 25.0%
! CTGTGTAATTAGTTACTAAA+GGG + chr1_2:52991395-52991414 Msa0076710:intron 25.0%
! TGTGTAATTAGTTACTAAAG+GGG + chr1_2:52991396-52991415 Msa0076710:intron 25.0%
!! TTTAGGTTACAAAAACTGTT+GGG + chr1_2:52991510-52991529 Msa0076710:intron 25.0%
!!! CTTGAAATTCCTATTTTTGA+TGG + chr1_2:52991672-52991691 Msa0076710:intron 25.0%
!!! TGAAATTCCTATTTTTGATG+GGG + chr1_2:52991674-52991693 Msa0076710:intron 25.0%
! AAAAGATGTATTCGATTGTA+GGG + chr1_2:52991726-52991745 Msa0076710:intron 25.0%
! ATCTTATCATAATTGAATCC+CGG - chr1_2:52991836-52991855 None:intergenic 25.0%
! TATTTCAAGCTAACAACATA+TGG - chr1_2:52991912-52991931 None:intergenic 25.0%
!! ATATGTTGTTAGCTTGAAAT+AGG + chr1_2:52991911-52991930 Msa0076710:intron 25.0%
! TCTGAAAGGAATATTATGAA+TGG + chr1_2:52992012-52992031 Msa0076710:intron 25.0%
! CTGAAAGGAATATTATGAAT+GGG + chr1_2:52992013-52992032 Msa0076710:intron 25.0%
! TAATGTTGTAAATAGATACC+TGG + chr1_2:52992041-52992060 Msa0076710:intron 25.0%
! AATATATCCCTTATAACCAT+GGG - chr1_2:52992113-52992132 None:intergenic 25.0%
! TAATATATCCCTTATAACCA+TGG - chr1_2:52992114-52992133 None:intergenic 25.0%
! GATATCTCATTATACACTTA+TGG - chr1_2:52992334-52992353 None:intergenic 25.0%
! GTATAATGAGATATCTATTC+GGG + chr1_2:52992339-52992358 Msa0076710:intron 25.0%
!! ATTAGAAAAGAGAGTACAAA+GGG - chr1_2:52992457-52992476 None:intergenic 25.0%
!! TATTAGAAAAGAGAGTACAA+AGG - chr1_2:52992458-52992477 None:intergenic 25.0%
! GTGTTTGTCAATTATTTGAA+TGG - chr1_2:52992515-52992534 None:intergenic 25.0%
! CAATCTTGTTAAAATAGCAA+TGG + chr1_2:52992586-52992605 Msa0076710:intron 25.0%
!!! TGTTTGTTTTCATCTATTTC+AGG - chr1_2:52992636-52992655 None:intergenic 25.0%
!!! GAAATAGTTTGTTTTGACTT+TGG + chr1_2:52992665-52992684 Msa0076710:intron 25.0%
!!! TTTTGGTGGATATATTCTTA+AGG + chr1_2:52992842-52992861 Msa0076710:intron 25.0%
! TTAAGGTCATTGAATATTTC+AGG + chr1_2:52992859-52992878 Msa0076710:intron 25.0%
!! TCTGCATGTAATTTAAAATG+TGG + chr1_2:52993426-52993445 Msa0076710:intron 25.0%
! AGCGGAAAGAAAAAAAAAAA+AGG - chr1_2:52993524-52993543 None:intergenic 25.0%
! TAAACTAAGAATTACCATTC+TGG - chr1_2:52993878-52993897 None:intergenic 25.0%
! GTGTAACATACAAAAAAAAC+TGG - chr1_2:52993925-52993944 None:intergenic 25.0%
!! TTTTTGTATGTTACACTTAC+AGG + chr1_2:52993929-52993948 Msa0076710:intron 25.0%
!!! TAGCTTCTTTTTTTTTTTGC+TGG + chr1_2:52994018-52994037 Msa0076710:intron 25.0%
!!! AGCTTCTTTTTTTTTTTGCT+GGG + chr1_2:52994019-52994038 Msa0076710:intron 25.0%
! AATTACCTATCTTTACAAAC+AGG - chr1_2:52994226-52994245 None:intergenic 25.0%
! AAAAATGAGAAATAATAGCC+AGG + chr1_2:52994693-52994712 Msa0076710:CDS 25.0%
! ATGTATCATATGTTTGATCA+GGG - chr1_2:52995431-52995450 None:intergenic 25.0%
!!! TCTTATTTTAACTATGACAG+TGG + chr1_2:52995615-52995634 Msa0076710:CDS 25.0%
! TTGAAATCATCAAAAAGAGA+GGG - chr1_2:52995714-52995733 None:intergenic 25.0%
! TTCAATGTGATGAAAGTTAA+AGG + chr1_2:52995765-52995784 Msa0076710:CDS 25.0%
! ATTGACAAAATCATTAGTGT+AGG - chr1_2:52996096-52996115 None:intergenic 25.0%
!! TGTCCATGAAGTTAATTTTA+GGG - chr1_2:52996518-52996537 None:intergenic 25.0%
! TAGAATATATCTTGGGATTT+GGG - chr1_2:52996858-52996877 None:intergenic 25.0%
! TTAGAATATATCTTGGGATT+TGG - chr1_2:52996859-52996878 None:intergenic 25.0%
! TATTGAAACTCAAATGAATG+TGG + chr1_2:52996905-52996924 Msa0076710:three_prime_UTR 25.0%
!! TTGGCTTTTGTAGCAATTTT+CGG + chr1_2:52987379-52987398 Msa0076710:intron 30.0%
! AAGATACGTTCTAAACACAT+TGG - chr1_2:52987700-52987719 None:intergenic 30.0%
GAATCAGATAAATGCATGTT+AGG + chr1_2:52987773-52987792 Msa0076710:intron 30.0%
!! ACTTTTTCCTTACCTTCTTT+AGG - chr1_2:52987847-52987866 None:intergenic 30.0%
TTAAATCCCAACCTAAACAA+AGG + chr1_2:52987903-52987922 Msa0076710:intron 30.0%
TAAACAAAGGTTCTGTTGTT+GGG + chr1_2:52987916-52987935 Msa0076710:intron 30.0%
AATTAGAATTGCAAGGTTCT+TGG - chr1_2:52988022-52988041 None:intergenic 30.0%
ATACGCTAATTAGAATTGCA+AGG - chr1_2:52988029-52988048 None:intergenic 30.0%
! TCTGAAATTCATTGTGTAAG+AGG + chr1_2:52988060-52988079 Msa0076710:intron 30.0%
CTGAAATTCATTGTGTAAGA+GGG + chr1_2:52988061-52988080 Msa0076710:intron 30.0%
! GATTTGTTCCAAACAATGAT+GGG - chr1_2:52988095-52988114 None:intergenic 30.0%
! AGATTTGTTCCAAACAATGA+TGG - chr1_2:52988096-52988115 None:intergenic 30.0%
TAATTCAATTGGATTTCGGT+TGG + chr1_2:52988185-52988204 Msa0076710:intron 30.0%
! TCACTATTGATGTTTCTACT+TGG + chr1_2:52988229-52988248 Msa0076710:intron 30.0%
!! GAGGATTATTTTATAAGCTG+GGG + chr1_2:52988417-52988436 Msa0076710:intron 30.0%
!! AGGATTATTTTATAAGCTGG+GGG + chr1_2:52988418-52988437 Msa0076710:intron 30.0%
! TTTTGTAGAGGTAAAACCTA+TGG + chr1_2:52988455-52988474 Msa0076710:intron 30.0%
CAGTAAATAAGTATCATTCC+AGG - chr1_2:52988496-52988515 None:intergenic 30.0%
! CAGATTTTTGTAAGTAGAGA+GGG + chr1_2:52988574-52988593 Msa0076710:intron 30.0%
! CAAAAGTTTTGCATCAGTTT+TGG + chr1_2:52988603-52988622 Msa0076710:intron 30.0%
TTTGGATAACAGTCTTTCTA+AGG + chr1_2:52988666-52988685 Msa0076710:intron 30.0%
CTTTAACAACAAGAAACAGA+GGG - chr1_2:52988765-52988784 None:intergenic 30.0%
TCTTTAACAACAAGAAACAG+AGG - chr1_2:52988766-52988785 None:intergenic 30.0%
! ATATAGCCTTGCATATAGTT+AGG + chr1_2:52988958-52988977 Msa0076710:intron 30.0%
GAATTTCCTAACTATATGCA+AGG - chr1_2:52988967-52988986 None:intergenic 30.0%
ATCAATTATTATGCACTCTC+CGG - chr1_2:52989103-52989122 None:intergenic 30.0%
TCATTCTTTAATTCTGTTGG+AGG + chr1_2:52989235-52989254 Msa0076710:intron 30.0%
AATATACCTTGCATATTTGG+TGG + chr1_2:52989312-52989331 Msa0076710:intron 30.0%
ATATACCTTGCATATTTGGT+GGG + chr1_2:52989313-52989332 Msa0076710:intron 30.0%
AGATACATGAAAAATGGTCA+TGG - chr1_2:52989450-52989469 None:intergenic 30.0%
!!! CGACATGATATTTTTAGTTC+TGG - chr1_2:52989723-52989742 None:intergenic 30.0%
GTAATTATGTGGTATGAAAG+GGG - chr1_2:52989754-52989773 None:intergenic 30.0%
CTGTAATTATGTGGTATGAA+AGG - chr1_2:52989756-52989775 None:intergenic 30.0%
TCTAAATTGAAAACCATGAC+TGG + chr1_2:52989956-52989975 Msa0076710:intron 30.0%
! CAACCCAATTTTTCATGTAA+AGG - chr1_2:52990071-52990090 None:intergenic 30.0%
CTTTACATGAAAAATTGGGT+TGG + chr1_2:52990069-52990088 Msa0076710:intron 30.0%
TAATAAATGAGCAAGAGAGA+AGG - chr1_2:52990185-52990204 None:intergenic 30.0%
! TACATTTTTACATACCCCTT+TGG + chr1_2:52990218-52990237 Msa0076710:intron 30.0%
TCTTTCCCTTGATATATGTA+TGG + chr1_2:52990342-52990361 Msa0076710:intron 30.0%
CAATCACCATACATATATCA+AGG - chr1_2:52990351-52990370 None:intergenic 30.0%
AACCTAATTGAAAAAGGCTT+TGG - chr1_2:52990465-52990484 None:intergenic 30.0%
ACATACTGAAACTCTTAACA+TGG - chr1_2:52990549-52990568 None:intergenic 30.0%
!! AAGTCAGCCTTTTATTTACT+TGG + chr1_2:52990658-52990677 Msa0076710:five_prime_UTR 30.0%
!! AGTCAGCCTTTTATTTACTT+GGG + chr1_2:52990659-52990678 Msa0076710:five_prime_UTR 30.0%
! GAAGAAAAAGTGTACATGAA+AGG - chr1_2:52990828-52990847 None:intergenic 30.0%
AACCGTCATATATAGCTATA+AGG - chr1_2:52990988-52991007 None:intergenic 30.0%
TTATAGCTATATATGACGGT+TGG + chr1_2:52990987-52991006 Msa0076710:intron 30.0%
! TTAACAACTCAATGAGTTGA+AGG + chr1_2:52991046-52991065 Msa0076710:intron 30.0%
!! GAAGGTTCTGAAATTTCTAA+AGG + chr1_2:52991064-52991083 Msa0076710:intron 30.0%
! GAAAAGCAGGCAAAATATTT+TGG + chr1_2:52991211-52991230 Msa0076710:intron 30.0%
! TTCAAAATGAGTTGTCGTTT+AGG + chr1_2:52991245-52991264 Msa0076710:intron 30.0%
!!! ATGTAGTCACTTTTAACAAG+CGG - chr1_2:52991357-52991376 None:intergenic 30.0%
! AAGGGGTAGTTTTTGTAAAT+AGG + chr1_2:52991413-52991432 Msa0076710:intron 30.0%
! GTTTAGGTTACAAAAACTGT+TGG + chr1_2:52991509-52991528 Msa0076710:intron 30.0%
CAAAAGATGTATTCGATTGT+AGG + chr1_2:52991725-52991744 Msa0076710:intron 30.0%
AAAGATGTATTCGATTGTAG+GGG + chr1_2:52991727-52991746 Msa0076710:intron 30.0%
! TACCTTCAATTTTTCTCCTT+CGG - chr1_2:52991757-52991776 None:intergenic 30.0%
ATATATCCCTTATAACCATG+GGG - chr1_2:52992112-52992131 None:intergenic 30.0%
GAATATTTCATAGCACTACT+GGG - chr1_2:52992140-52992159 None:intergenic 30.0%
TGAATATTTCATAGCACTAC+TGG - chr1_2:52992141-52992160 None:intergenic 30.0%
!!! TAATCCTCTTTTTGAAGCTA+TGG + chr1_2:52992478-52992497 Msa0076710:intron 30.0%
TTCATCTATTTCAGGACAAT+TGG - chr1_2:52992628-52992647 None:intergenic 30.0%
!! TTGACTTTGGGTTATCTTTT+TGG + chr1_2:52992678-52992697 Msa0076710:intron 30.0%
!!! TTGGGTTATCTTTTTGGTTA+AGG + chr1_2:52992684-52992703 Msa0076710:intron 30.0%
AATAAAATGAGCACTATCGA+AGG - chr1_2:52992746-52992765 None:intergenic 30.0%
! TGCTCTTTAGATGATGATTT+TGG + chr1_2:52992825-52992844 Msa0076710:intron 30.0%
! TCTTTAGATGATGATTTTGG+TGG + chr1_2:52992828-52992847 Msa0076710:intron 30.0%
CAATAGAAAAAGTAACAGGA+GGG - chr1_2:52992899-52992918 None:intergenic 30.0%
! TTTCTGTTTTGCCATGTTTT+GGG + chr1_2:52992946-52992965 Msa0076710:five_prime_UTR 30.0%
! AAAAGGAATGTGGACTAAAA+TGG + chr1_2:52992995-52993014 Msa0076710:exon 30.0%
AAAAAATTGGAAGGAGATGA+TGG - chr1_2:52993081-52993100 None:intergenic 30.0%
! TTATGTGCTAAAATTTTGGG+TGG + chr1_2:52993349-52993368 Msa0076710:intron 30.0%
AGATATAGAAAAGTCGTTCA+GGG - chr1_2:52993386-52993405 None:intergenic 30.0%
AAGATATAGAAAAGTCGTTC+AGG - chr1_2:52993387-52993406 None:intergenic 30.0%
AAGGAGAAAACAAACATCAT+CGG - chr1_2:52993505-52993524 None:intergenic 30.0%
!! ACGAATTTGATTTGATAGAG+CGG - chr1_2:52993542-52993561 None:intergenic 30.0%
! TCGTTCAATTCTTTTCTTGT+AGG + chr1_2:52993558-52993577 Msa0076710:intron 30.0%
GATTCGAAACAGATTATACA+CGG + chr1_2:52993798-52993817 Msa0076710:intron 30.0%
TAAACGGTAGAAACATTTGT+TGG - chr1_2:52994173-52994192 None:intergenic 30.0%
AGCATGCATACTCATATAAA+CGG - chr1_2:52994189-52994208 None:intergenic 30.0%
! CTTTTCCTGTTTGTAAAGAT+AGG + chr1_2:52994218-52994237 Msa0076710:intron 30.0%
!! AGTTAGTTTGTGAAATGCAA+TGG - chr1_2:52994309-52994328 None:intergenic 30.0%
CTATTTAGTCCTTCTTACAT+TGG + chr1_2:52994409-52994428 Msa0076710:intron 30.0%
! CATGATGATGATAATGATGA+TGG + chr1_2:52994958-52994977 Msa0076710:CDS 30.0%
ACATTCATGATACTAGTAAG+TGG + chr1_2:52995244-52995263 Msa0076710:CDS 30.0%
! ACACCTGAAGTACAAATTTT+GGG - chr1_2:52995281-52995300 None:intergenic 30.0%
! TACACCTGAAGTACAAATTT+TGG - chr1_2:52995282-52995301 None:intergenic 30.0%
CATGTATCATATGTTTGATC+AGG - chr1_2:52995432-52995451 None:intergenic 30.0%
CTGATCAAACATATGATACA+TGG + chr1_2:52995430-52995449 Msa0076710:CDS 30.0%
CTTGAAATCATCAAAAAGAG+AGG - chr1_2:52995715-52995734 None:intergenic 30.0%
CATTGAAATCAAAAACCTTC+CGG - chr1_2:52995752-52995771 None:intergenic 30.0%
AATGTGATGAAAGTTAAAGG+CGG + chr1_2:52995768-52995787 Msa0076710:CDS 30.0%
CAAGAAAGAAAGAAAAATGC+AGG - chr1_2:52996027-52996046 None:intergenic 30.0%
ATATGCATTAACTATGCCAA+AGG + chr1_2:52996479-52996498 Msa0076710:CDS 30.0%
! GTCCATGAAGTTAATTTTAG+GGG - chr1_2:52996517-52996536 None:intergenic 30.0%
! CTGTCCATGAAGTTAATTTT+AGG - chr1_2:52996519-52996538 None:intergenic 30.0%
CTTCCAATTAATCACTTGAC+TGG + chr1_2:52987298-52987317 Msa0076710:intron 35.0%
TGACCAGTCAAGTGATTAAT+TGG - chr1_2:52987304-52987323 None:intergenic 35.0%
TAACCATTTGAATGGTATGC+AGG - chr1_2:52987329-52987348 None:intergenic 35.0%
GAAAATTGCTACAAAAGCCA+AGG - chr1_2:52987380-52987399 None:intergenic 35.0%
! TGGCTTTTGTAGCAATTTTC+GGG + chr1_2:52987380-52987399 Msa0076710:intron 35.0%
CCAGTACAAGAAGAAAGAAA+AGG - chr1_2:52987415-52987434 None:intergenic 35.0%
! CCTTTTCTTTCTTCTTGTAC+TGG + chr1_2:52987412-52987431 Msa0076710:intron 35.0%
AGCATATCAAGAGGATTTAG+AGG + chr1_2:52987468-52987487 Msa0076710:five_prime_UTR 35.0%
TTAGAGGTGAATTCAGACAA+TGG + chr1_2:52987484-52987503 Msa0076710:five_prime_UTR 35.0%
AAATGAGACTTACAGAGAAC+TGG - chr1_2:52987554-52987573 None:intergenic 35.0%
! AGATTAGTTGCTATCTACAG+AGG - chr1_2:52987810-52987829 None:intergenic 35.0%
ACCTTCTTTAGGTAGCTTAT+GGG - chr1_2:52987836-52987855 None:intergenic 35.0%
TACCTTCTTTAGGTAGCTTA+TGG - chr1_2:52987837-52987856 None:intergenic 35.0%
TAAGCTACCTAAAGAAGGTA+AGG + chr1_2:52987837-52987856 Msa0076710:intron 35.0%
! ACAGAACCTTTGTTTAGGTT+GGG - chr1_2:52987912-52987931 None:intergenic 35.0%
! AACAGAACCTTTGTTTAGGT+TGG - chr1_2:52987913-52987932 None:intergenic 35.0%
! CAACAACAGAACCTTTGTTT+AGG - chr1_2:52987917-52987936 None:intergenic 35.0%
CTAAACAAAGGTTCTGTTGT+TGG + chr1_2:52987915-52987934 Msa0076710:intron 35.0%
ATATTAGAGTCAGCAAATGC+TGG + chr1_2:52987949-52987968 Msa0076710:intron 35.0%
TATTAGAGTCAGCAAATGCT+GGG + chr1_2:52987950-52987969 Msa0076710:intron 35.0%
TTACAGATCCCATCATTGTT+TGG + chr1_2:52988084-52988103 Msa0076710:intron 35.0%
! AGTCAGTGTTGTTATGGAAA+AGG + chr1_2:52988136-52988155 Msa0076710:intron 35.0%
AAGTATCATTCCAGGTTACA+GGG - chr1_2:52988488-52988507 None:intergenic 35.0%
TAAGTATCATTCCAGGTTAC+AGG - chr1_2:52988489-52988508 None:intergenic 35.0%
! GCAGATTTTTGTAAGTAGAG+AGG + chr1_2:52988573-52988592 Msa0076710:intron 35.0%
! ATTTTTGTAAGTAGAGAGGG+AGG + chr1_2:52988577-52988596 Msa0076710:intron 35.0%
!! CAGTCTTTCTAAGGACTTTT+TGG + chr1_2:52988675-52988694 Msa0076710:intron 35.0%
TCAAGTATAGGAAAACAAGG+CGG + chr1_2:52988828-52988847 Msa0076710:intron 35.0%
CATGTCACTGCAAGTAAATT+AGG + chr1_2:52989019-52989038 Msa0076710:intron 35.0%
GTAAATTAGGTGATGATCAG+TGG + chr1_2:52989032-52989051 Msa0076710:intron 35.0%
TTCTGGTGAAAGGATAATCT+TGG + chr1_2:52989067-52989086 Msa0076710:intron 35.0%
TCTGGTGAAAGGATAATCTT+GGG + chr1_2:52989068-52989087 Msa0076710:intron 35.0%
TCAATTATTATGCACTCTCC+GGG - chr1_2:52989102-52989121 None:intergenic 35.0%
! TGGAGGATATGATCATTTTG+TGG + chr1_2:52989252-52989271 Msa0076710:intron 35.0%
ATATTCCCTCAAAGAAGACA+CGG - chr1_2:52989297-52989316 None:intergenic 35.0%
GGGAATATACCTTGCATATT+TGG + chr1_2:52989309-52989328 Msa0076710:intron 35.0%
ATGATCAGGGTATATCATCA+TGG + chr1_2:52989533-52989552 Msa0076710:five_prime_UTR 35.0%
TGATCAGGGTATATCATCAT+GGG + chr1_2:52989534-52989553 Msa0076710:five_prime_UTR 35.0%
CTATCACACAGGTATGTATA+AGG - chr1_2:52989672-52989691 None:intergenic 35.0%
ATATGGAACTTCTATCACAC+AGG - chr1_2:52989683-52989702 None:intergenic 35.0%
GATAGAAGTTCCATATTCGT+AGG + chr1_2:52989687-52989706 Msa0076710:intron 35.0%
!!! GATATTTTTAGTTCTGGGTC+TGG - chr1_2:52989717-52989736 None:intergenic 35.0%
CTGCTTTCTCTGTAATTATG+TGG - chr1_2:52989765-52989784 None:intergenic 35.0%
ACACACCGTATAGACAAAAA+CGG - chr1_2:52989799-52989818 None:intergenic 35.0%
TCATCTGTCAGAAAATGGAA+TGG + chr1_2:52989846-52989865 Msa0076710:intron 35.0%
TAAAGAGAAACATCCAGTCA+TGG - chr1_2:52989972-52989991 None:intergenic 35.0%
AGTTGCCAGTTCAATAAAAG+AGG - chr1_2:52990026-52990045 None:intergenic 35.0%
TTGCGCAATATCATCTCAAA+AGG - chr1_2:52990161-52990180 None:intergenic 35.0%
! CATTACAACAGCAATTTTGC+TGG + chr1_2:52990301-52990320 Msa0076710:intron 35.0%
! TTGTCATTGTTGGTGAATAC+TGG + chr1_2:52990393-52990412 Msa0076710:intron 35.0%
! CTAATTGAAAAAGGCTTTGG+TGG - chr1_2:52990462-52990481 None:intergenic 35.0%
!!! CACCAAAGCCTTTTTCAATT+AGG + chr1_2:52990460-52990479 Msa0076710:intron 35.0%
TGTGTAAATGCCTACCTATA+CGG + chr1_2:52990504-52990523 Msa0076710:intron 35.0%
GATGAATTTACCGTATAGGT+AGG - chr1_2:52990517-52990536 None:intergenic 35.0%
GAAACTCTTAACATGGAATG+TGG - chr1_2:52990542-52990561 None:intergenic 35.0%
!!! CTTTTGTAGTTGGTAAACAC+TGG + chr1_2:52990621-52990640 Msa0076710:intron 35.0%
TTACCGCCCAAGTAAATAAA+AGG - chr1_2:52990668-52990687 None:intergenic 35.0%
GATCTTGTGCAGAATTCTAT+TGG + chr1_2:52990765-52990784 Msa0076710:intron 35.0%
TTGTGCAGAATTCTATTGGT+GGG + chr1_2:52990769-52990788 Msa0076710:intron 35.0%
GTTTGCAGATTTCTCTTTGT+AGG + chr1_2:52991009-52991028 Msa0076710:intron 35.0%
! TTTTCTGATCTCAGGATCAT+TGG - chr1_2:52991196-52991215 None:intergenic 35.0%
!! AGTTTTGCGTGGTTTGTAAA+AGG + chr1_2:52991272-52991291 Msa0076710:intron 35.0%
GTTATGATATGGTGTTCTTG+AGG + chr1_2:52991294-52991313 Msa0076710:intron 35.0%
ACAACACTAGACATTGAGAT+TGG + chr1_2:52991486-52991505 Msa0076710:intron 35.0%
CAACACTAGACATTGAGATT+GGG + chr1_2:52991487-52991506 Msa0076710:intron 35.0%
TAGACATTGAGATTGGGTTT+AGG + chr1_2:52991493-52991512 Msa0076710:intron 35.0%
TGACCATGCTTCATTTATTC+AGG - chr1_2:52991558-52991577 None:intergenic 35.0%
ATGTCATCCCCATCAAAAAT+AGG - chr1_2:52991684-52991703 None:intergenic 35.0%
AAGATGTATTCGATTGTAGG+GGG + chr1_2:52991728-52991747 Msa0076710:intron 35.0%
! ACCTTCAATTTTTCTCCTTC+GGG - chr1_2:52991756-52991775 None:intergenic 35.0%
AAGCTAACAACATATGGATG+GGG - chr1_2:52991906-52991925 None:intergenic 35.0%
CAAGCTAACAACATATGGAT+GGG - chr1_2:52991907-52991926 None:intergenic 35.0%
TCAAGCTAACAACATATGGA+TGG - chr1_2:52991908-52991927 None:intergenic 35.0%
! GTTGTTAGCTTGAAATAGGA+CGG + chr1_2:52991915-52991934 Msa0076710:intron 35.0%
! TTGTTAGCTTGAAATAGGAC+GGG + chr1_2:52991916-52991935 Msa0076710:intron 35.0%
CGGATCTGAGAAGATTTAAA+CGG - chr1_2:52991969-52991988 None:intergenic 35.0%
! CTCTAGTTTGTAATCTTGAG+CGG - chr1_2:52991989-52992008 None:intergenic 35.0%
ACAAACTAGAGCTATCTGAA+AGG + chr1_2:52991998-52992017 Msa0076710:intron 35.0%
TGTTGTAAATAGATACCTGG+AGG + chr1_2:52992044-52992063 Msa0076710:intron 35.0%
TATATCCCTTATAACCATGG+GGG - chr1_2:52992111-52992130 None:intergenic 35.0%
CTAAAGAGCAATTTGAAGAC+AGG - chr1_2:52992815-52992834 None:intergenic 35.0%
GCAATAGAAAAAGTAACAGG+AGG - chr1_2:52992900-52992919 None:intergenic 35.0%
GCAGCAATAGAAAAAGTAAC+AGG - chr1_2:52992903-52992922 None:intergenic 35.0%
! GTTTCTGTTTTGCCATGTTT+TGG + chr1_2:52992945-52992964 Msa0076710:five_prime_UTR 35.0%
! AATGTGGACTAAAATGGTGA+AGG + chr1_2:52993001-52993020 Msa0076710:exon 35.0%
!! ACTGGTTACTTGTGTTTTTG+TGG + chr1_2:52993025-52993044 Msa0076710:intron 35.0%
! GTATGAAAAGTATACAGGGT+TGG + chr1_2:52993104-52993123 Msa0076710:intron 35.0%
TTAAGGATGGGCAATTTGAT+CGG + chr1_2:52993149-52993168 Msa0076710:intron 35.0%
! TGCAACAGTACATTTTCCAT+GGG - chr1_2:52993260-52993279 None:intergenic 35.0%
! ATGCAACAGTACATTTTCCA+TGG - chr1_2:52993261-52993280 None:intergenic 35.0%
CCTTTCACAAACTTCACTTT+CGG - chr1_2:52993304-52993323 None:intergenic 35.0%
ATTTATATTCTTCAGGCCTG+TGG + chr1_2:52993671-52993690 Msa0076710:intron 35.0%
AGTAATGAACAAACAACCAC+AGG - chr1_2:52993690-52993709 None:intergenic 35.0%
AGCTTCTCATCCTTAAGAAT+AGG - chr1_2:52993854-52993873 None:intergenic 35.0%
CAACAAAAGCCAATGTAAGA+AGG - chr1_2:52994421-52994440 None:intergenic 35.0%
!!! CTTCTTACATTGGCTTTTGT+TGG + chr1_2:52994419-52994438 Msa0076710:intron 35.0%
!!! TACATTGGCTTTTGTTGGTT+AGG + chr1_2:52994424-52994443 Msa0076710:intron 35.0%
! CCACTTTAGCTTCAGTTATT+CGG - chr1_2:52994750-52994769 None:intergenic 35.0%
AGAGATACATCCCATGAATA+TGG + chr1_2:52994865-52994884 Msa0076710:CDS 35.0%
ATTCACGGTTCCATATTCAT+GGG - chr1_2:52994878-52994897 None:intergenic 35.0%
TATTCACGGTTCCATATTCA+TGG - chr1_2:52994879-52994898 None:intergenic 35.0%
!! GATGATGATAATGATGATGG+TGG + chr1_2:52994961-52994980 Msa0076710:CDS 35.0%
!! ATGATAATGATGATGGTGGA+AGG + chr1_2:52994965-52994984 Msa0076710:CDS 35.0%
TAAGCATTCATTTCATGCCA+TGG - chr1_2:52995222-52995241 None:intergenic 35.0%
!!! GAAGTACAAATTTTGGGTTC+AGG - chr1_2:52995275-52995294 None:intergenic 35.0%
GAACCCAAAATTTGTACTTC+AGG + chr1_2:52995275-52995294 Msa0076710:CDS 35.0%
! TATCGAGATTTTTCTGCAAC+AGG + chr1_2:52995300-52995319 Msa0076710:CDS 35.0%
!! GATGGTCTTATTGAGAATGA+TGG + chr1_2:52995402-52995421 Msa0076710:CDS 35.0%
! ATTTTGCGGAAACATGCAAA+AGG + chr1_2:52995544-52995563 Msa0076710:CDS 35.0%
ATGCAAAAGGAAGTTTCTGA+AGG + chr1_2:52995557-52995576 Msa0076710:CDS 35.0%
! CACAGCTTTTGTTCATATAC+TGG - chr1_2:52995588-52995607 None:intergenic 35.0%
CAGTATATGAACAAAAGCTG+TGG + chr1_2:52995586-52995605 Msa0076710:CDS 35.0%
TATGAACAAAAGCTGTGGAA+TGG + chr1_2:52995591-52995610 Msa0076710:CDS 35.0%
TCAAGATCAAAAGTTCTCTC+CGG + chr1_2:52995730-52995749 Msa0076710:CDS 35.0%
AACAATGATACTTGCAGGAA+TGG + chr1_2:52995893-52995912 Msa0076710:CDS 35.0%
GAAACACAAACAATCACTGA+TGG - chr1_2:52996003-52996022 None:intergenic 35.0%
TTTCTTTCTTGTGCATGTGT+AGG + chr1_2:52996036-52996055 Msa0076710:intron 35.0%
! GTTGACTTTGAGAAACAGAT+GGG - chr1_2:52996170-52996189 None:intergenic 35.0%
CTGAAACCAGTATCTGTTAT+GGG - chr1_2:52996382-52996401 None:intergenic 35.0%
! TCTGAAACCAGTATCTGTTA+TGG - chr1_2:52996383-52996402 None:intergenic 35.0%
TTATGTAATCCTCCTCTAAC+AGG - chr1_2:52996555-52996574 None:intergenic 35.0%
GGAGGATTACATAAAGAAAC+AGG + chr1_2:52996561-52996580 Msa0076710:CDS 35.0%
ATTGTTAACATGTAAGCACG+TGG + chr1_2:52996647-52996666 Msa0076710:exon 35.0%
! AGCACGTGGAAATTTTGTAT+AGG + chr1_2:52996661-52996680 Msa0076710:three_prime_UTR 35.0%
CGTAGAGAAGCTGTTAAAAA+TGG + chr1_2:52996718-52996737 Msa0076710:three_prime_UTR 35.0%
AGAGAAGCTGTTAAAAATGG+TGG + chr1_2:52996721-52996740 Msa0076710:three_prime_UTR 35.0%
CTGTTAAAAATGGTGGTCAA+GGG + chr1_2:52996728-52996747 Msa0076710:three_prime_UTR 35.0%
ACTCAAATGAATGTGGTGAA+TGG + chr1_2:52996912-52996931 Msa0076710:three_prime_UTR 35.0%
TTGCAACTTTCTCGAGTGAA+AGG - chr1_2:52987216-52987235 None:intergenic 40.0%
ACTCCTGCATACCATTCAAA+TGG + chr1_2:52987323-52987342 Msa0076710:intron 40.0%
ATGTGATTATCTACCTACGC+AGG + chr1_2:52987439-52987458 Msa0076710:intron 40.0%
AGACAATGGCAAATCATTCC+TGG + chr1_2:52987498-52987517 Msa0076710:five_prime_UTR 40.0%
! CAATGGAGTCAGTGTTGTTA+TGG + chr1_2:52988130-52988149 Msa0076710:intron 40.0%
! GCACTTCTGTTTCTCTTCTT+TGG - chr1_2:52988279-52988298 None:intergenic 40.0%
! TTTTATAAGCTGGGGGAATG+AGG + chr1_2:52988425-52988444 Msa0076710:intron 40.0%
TTTATAAGCTGGGGGAATGA+GGG + chr1_2:52988426-52988445 Msa0076710:intron 40.0%
! TGAGGGTTCTCTTTTTGTAG+AGG + chr1_2:52988443-52988462 Msa0076710:intron 40.0%
GTTACAGGGGAATAAACCAT+AGG - chr1_2:52988474-52988493 None:intergenic 40.0%
AGTATCATTCCAGGTTACAG+GGG - chr1_2:52988487-52988506 None:intergenic 40.0%
GCAGTAACAGTGGCATAAAA+TGG - chr1_2:52988997-52989016 None:intergenic 40.0%
! ATTGTGCTCTTTCTGGTGAA+AGG + chr1_2:52989057-52989076 Msa0076710:intron 40.0%
TAATCTTGGGACTTCTTACC+CGG + chr1_2:52989081-52989100 Msa0076710:intron 40.0%
TTTATCCGTGAGAAGTAGCT+TGG + chr1_2:52989142-52989161 Msa0076710:intron 40.0%
TAGAACCAAGCTACTTCTCA+CGG - chr1_2:52989150-52989169 None:intergenic 40.0%
TTTACCCGTGTCTTCTTTGA+GGG + chr1_2:52989289-52989308 Msa0076710:intron 40.0%
TATTCCCTCAAAGAAGACAC+GGG - chr1_2:52989296-52989315 None:intergenic 40.0%
GATCAGGGTATATCATCATG+GGG + chr1_2:52989535-52989554 Msa0076710:five_prime_UTR 40.0%
TCATGGGGATGGAATCTAAA+TGG + chr1_2:52989550-52989569 Msa0076710:five_prime_UTR 40.0%
AAGCTCTTGGAAACAAAGCA+TGG - chr1_2:52989591-52989610 None:intergenic 40.0%
!! ATGCTTTGTTTCCAAGAGCT+TGG + chr1_2:52989590-52989609 Msa0076710:five_prime_UTR 40.0%
TCATAAACAGTCCAAGCTCT+TGG - chr1_2:52989604-52989623 None:intergenic 40.0%
AGAGCTTGGACTGTTTATGA+TGG + chr1_2:52989604-52989623 Msa0076710:five_prime_UTR 40.0%
!!! TGCTGCCGTTTTTGTCTATA+CGG + chr1_2:52989791-52989810 Msa0076710:five_prime_UTR 40.0%
!! GAAAAATTGGGTTGGATGCA+TGG + chr1_2:52990077-52990096 Msa0076710:intron 40.0%
!!! CAGCAATTTTGCTGGTTCAT+AGG + chr1_2:52990309-52990328 Msa0076710:intron 40.0%
! ATTGAAAAAGGCTTTGGTGG+TGG - chr1_2:52990459-52990478 None:intergenic 40.0%
ACTCTTAACATGGAATGTGG+CGG - chr1_2:52990539-52990558 None:intergenic 40.0%
!! CAGCCTTTTATTTACTTGGG+CGG + chr1_2:52990662-52990681 Msa0076710:five_prime_UTR 40.0%
CTTGTGCAGAATTCTATTGG+TGG + chr1_2:52990768-52990787 Msa0076710:intron 40.0%
TTCATTCACAGAGCTGAAGA+TGG + chr1_2:52990922-52990941 Msa0076710:intron 40.0%
! CTTGTGATATAGAAGTACGC+CGG - chr1_2:52990953-52990972 None:intergenic 40.0%
!! GTTTAGGATCAAGTTTTGCG+TGG + chr1_2:52991261-52991280 Msa0076710:intron 40.0%
! TGGTGTTCTTGAGGTTTGTT+TGG + chr1_2:52991303-52991322 Msa0076710:intron 40.0%
CAGCCTGAATAAATGAAGCA+TGG + chr1_2:52991552-52991571 Msa0076710:intron 40.0%
TTTGATGGGGATGACATGAT+AGG + chr1_2:52991687-52991706 Msa0076710:intron 40.0%
TTGATGGGGATGACATGATA+GGG + chr1_2:52991688-52991707 Msa0076710:intron 40.0%
TCCCGAAGGAGAAAAATTGA+AGG + chr1_2:52991752-52991771 Msa0076710:intron 40.0%
AGGCTTTACCACGGTAAAAA+TGG + chr1_2:52991797-52991816 Msa0076710:intron 40.0%
!! GACTTTCACCATTTTTACCG+TGG - chr1_2:52991808-52991827 None:intergenic 40.0%
AAATGGTGAAAGTCTTGCAC+CGG + chr1_2:52991814-52991833 Msa0076710:intron 40.0%
AGCTAACAACATATGGATGG+GGG - chr1_2:52991905-52991924 None:intergenic 40.0%
ATCATCTGCATCGCTTTACA+TGG + chr1_2:52992067-52992086 Msa0076710:intron 40.0%
TCATCTGCATCGCTTTACAT+GGG + chr1_2:52992068-52992087 Msa0076710:intron 40.0%
ATATCCCTTATAACCATGGG+GGG - chr1_2:52992110-52992129 None:intergenic 40.0%
CACTCCATAGCTTCAAAAAG+AGG - chr1_2:52992485-52992504 None:intergenic 40.0%
AAAATGAGCACTATCGAAGG+AGG - chr1_2:52992743-52992762 None:intergenic 40.0%
!!! CTTTTGCTGTTACGCTACTT+CGG - chr1_2:52992980-52992999 None:intergenic 40.0%
! GACTAAAATGGTGAAGGTAC+TGG + chr1_2:52993007-52993026 Msa0076710:intron 40.0%
TAAGGATGGGCAATTTGATC+GGG + chr1_2:52993150-52993169 Msa0076710:intron 40.0%
GATCGGGAAAATTTCTCTTC+TGG + chr1_2:52993166-52993185 Msa0076710:CDS 40.0%
! GCAACAGTACATTTTCCATG+GGG - chr1_2:52993259-52993278 None:intergenic 40.0%
!! CTGTTGCATTTAGTCTTGCA+TGG + chr1_2:52993272-52993291 Msa0076710:CDS 40.0%
CCGAAAGTGAAGTTTGTGAA+AGG + chr1_2:52993301-52993320 Msa0076710:CDS 40.0%
AAAGTGGCTCAGATTGCATT+TGG + chr1_2:52993465-52993484 Msa0076710:intron 40.0%
TCGAAACAGATTATACACGG+TGG + chr1_2:52993801-52993820 Msa0076710:intron 40.0%
CGAAACAGATTATACACGGT+GGG + chr1_2:52993802-52993821 Msa0076710:intron 40.0%
GGGAAGAAGAGATTGCAAAA+TGG + chr1_2:52993822-52993841 Msa0076710:CDS 40.0%
AGAAGAGATTGCAAAATGGC+AGG + chr1_2:52993826-52993845 Msa0076710:CDS 40.0%
ATGGCAGGATCCTATTCTTA+AGG + chr1_2:52993841-52993860 Msa0076710:CDS 40.0%
GAACTCTACTTTCTTGTTGC+TGG + chr1_2:52994506-52994525 Msa0076710:CDS 40.0%
GAAGATAGCAAAGTAGAGTC+TGG - chr1_2:52994673-52994692 None:intergenic 40.0%
CCGAATAACTGAAGCTAAAG+TGG + chr1_2:52994747-52994766 Msa0076710:CDS 40.0%
CTATGATTCTACTGCTCCTA+GGG + chr1_2:52994813-52994832 Msa0076710:CDS 40.0%
TATGATTCTACTGCTCCTAG+GGG + chr1_2:52994814-52994833 Msa0076710:CDS 40.0%
ACCGTGAATACTCTCAGAAA+CGG + chr1_2:52994889-52994908 Msa0076710:CDS 40.0%
!! TCCGTTTCTGAGAGTATTCA+CGG - chr1_2:52994893-52994912 None:intergenic 40.0%
AAGGTGTGGAATATGTCATG+TGG + chr1_2:52995001-52995020 Msa0076710:CDS 40.0%
TGGAAGGAGAGTAAAGTTTC+TGG + chr1_2:52995131-52995150 Msa0076710:CDS 40.0%
!! AGAGTAAAGTTTCTGGCAGA+GGG + chr1_2:52995138-52995157 Msa0076710:CDS 40.0%
! GCAACAGGTGATTTGCAATT+TGG + chr1_2:52995315-52995334 Msa0076710:CDS 40.0%
CAATTCGATAGAGATGCTGA+TGG + chr1_2:52995384-52995403 Msa0076710:CDS 40.0%
! TATGATACATGGACTGTCCA+TGG + chr1_2:52995441-52995460 Msa0076710:CDS 40.0%
ATCTCTGTCACCTAGTTGAA+TGG - chr1_2:52995526-52995545 None:intergenic 40.0%
! ACTAGGTGACAGAGATTTTG+CGG + chr1_2:52995530-52995549 Msa0076710:CDS 40.0%
ATCCATTCAAGCCGATCAAT+TGG + chr1_2:52995656-52995675 Msa0076710:CDS 40.0%
AATGGTATACAGCATCCTCA+GGG + chr1_2:52995685-52995704 Msa0076710:CDS 40.0%
AAAGTTAAAGGCGGCAGAAT+GGG + chr1_2:52995777-52995796 Msa0076710:CDS 40.0%
TATGCAGTCTCGAGAGATAT+GGG + chr1_2:52995845-52995864 Msa0076710:CDS 40.0%
ACAAACAATCACTGATGGCA+GGG - chr1_2:52995998-52996017 None:intergenic 40.0%
TTTCTTGTGCATGTGTAGGA+GGG + chr1_2:52996040-52996059 Msa0076710:intron 40.0%
!! CGTTGACTTTGAGAAACAGA+TGG - chr1_2:52996171-52996190 None:intergenic 40.0%
CTTTCTCCCATAACAGATAC+TGG + chr1_2:52996373-52996392 Msa0076710:intron 40.0%
!! CCAGAGGCATTTACAATTGA+CGG + chr1_2:52996405-52996424 Msa0076710:CDS 40.0%
!! CAGAGGCATTTACAATTGAC+GGG + chr1_2:52996406-52996425 Msa0076710:CDS 40.0%
! TTACAATTGACGGGCACTAT+CGG + chr1_2:52996415-52996434 Msa0076710:CDS 40.0%
GGCCCCTAAAATTAACTTCA+TGG + chr1_2:52996512-52996531 Msa0076710:CDS 40.0%
GCTGTTAAAAATGGTGGTCA+AGG + chr1_2:52996727-52996746 Msa0076710:three_prime_UTR 40.0%
TACAAGTTACAACTGAACCC+CGG - chr1_2:52996754-52996773 None:intergenic 40.0%
ATTATCTACCTACGCAGGAG+TGG + chr1_2:52987444-52987463 Msa0076710:intron 45.0%
ATGTGAACCATCACCTGTCA+TGG + chr1_2:52987524-52987543 Msa0076710:five_prime_UTR 45.0%
GAGACTTACAGAGAACTGGT+TGG - chr1_2:52987550-52987569 None:intergenic 45.0%
GCCCATAAGCTACCTAAAGA+AGG + chr1_2:52987832-52987851 Msa0076710:intron 45.0%
TGGTTTATTCCCCTGTAACC+TGG + chr1_2:52988475-52988494 Msa0076710:intron 45.0%
!!! TTTGCATCAGTTTTGGCTCC+CGG + chr1_2:52988610-52988629 Msa0076710:intron 45.0%
CAGGAATGTTAGAGCCTGTT+TGG - chr1_2:52988921-52988940 None:intergenic 45.0%
GTGACATGAAGCAGTAACAG+TGG - chr1_2:52989007-52989026 None:intergenic 45.0%
AGTGGCAATTGTGCTCTTTC+TGG + chr1_2:52989050-52989069 Msa0076710:intron 45.0%
CTTTACCCGTGTCTTCTTTG+AGG + chr1_2:52989288-52989307 Msa0076710:intron 45.0%
GAACTCCCACCAAATATGCA+AGG - chr1_2:52989321-52989340 None:intergenic 45.0%
! CATATTTGGTGGGAGTTCGA+GGG + chr1_2:52989323-52989342 Msa0076710:intron 45.0%
! ATATTTGGTGGGAGTTCGAG+GGG + chr1_2:52989324-52989343 Msa0076710:intron 45.0%
GCAAGCAGAACTCAGATTAC+TGG - chr1_2:52989428-52989447 None:intergenic 45.0%
TAGCAGGAAAGCTGATGATC+AGG + chr1_2:52989519-52989538 Msa0076710:five_prime_UTR 45.0%
AGCAGGAAAGCTGATGATCA+GGG + chr1_2:52989520-52989539 Msa0076710:five_prime_UTR 45.0%
AGGGTATATCATCATGGGGA+TGG + chr1_2:52989539-52989558 Msa0076710:five_prime_UTR 45.0%
AAGCATGGTATGTTGAGTGC+TGG - chr1_2:52989576-52989595 None:intergenic 45.0%
GTATAGACAAAAACGGCAGC+AGG - chr1_2:52989792-52989811 None:intergenic 45.0%
! TAGTAGAAGCTGTGCTACTC+TGG - chr1_2:52989997-52990016 None:intergenic 45.0%
CATAACCATAGAGGGAGCTT+TGG - chr1_2:52990248-52990267 None:intergenic 45.0%
GGCGGATGAATTTACCGTAT+AGG - chr1_2:52990521-52990540 None:intergenic 45.0%
ACTAGAAAGATGCCTTTCCC+TGG + chr1_2:52991128-52991147 Msa0076710:intron 45.0%
ATCCAAAGTAGTCCAGGGAA+AGG - chr1_2:52991143-52991162 None:intergenic 45.0%
CGCAAATCCAAAGTAGTCCA+GGG - chr1_2:52991148-52991167 None:intergenic 45.0%
TCGCAAATCCAAAGTAGTCC+AGG - chr1_2:52991149-52991168 None:intergenic 45.0%
GATCCTGAGATCAGAAAAGC+AGG + chr1_2:52991198-52991217 Msa0076710:intron 45.0%
!! TTGCCTGCTTTTCTGATCTC+AGG - chr1_2:52991204-52991223 None:intergenic 45.0%
! TTTGTTTGGTCCGCGCTTTT+AGG + chr1_2:52991317-52991336 Msa0076710:intron 45.0%
ACCACTTCCTTCATACACTG+GGG - chr1_2:52991592-52991611 None:intergenic 45.0%
CACCACTTCCTTCATACACT+GGG - chr1_2:52991593-52991612 None:intergenic 45.0%
ACACCACTTCCTTCATACAC+TGG - chr1_2:52991594-52991613 None:intergenic 45.0%
AGACTAGAATGACCGTGACT+CGG + chr1_2:52991648-52991667 Msa0076710:intron 45.0%
GGAATTTCAAGACCGAGTCA+CGG - chr1_2:52991663-52991682 None:intergenic 45.0%
GATGACATGATAGGGTGGAT+TGG + chr1_2:52991696-52991715 Msa0076710:intron 45.0%
!! CATGATAGGGTGGATTGGAA+TGG + chr1_2:52991701-52991720 Msa0076710:intron 45.0%
AGGTAGCCCTGATAGAATTG+AGG + chr1_2:52991772-52991791 Msa0076710:intron 45.0%
GGTAGCCCTGATAGAATTGA+GGG + chr1_2:52991773-52991792 Msa0076710:intron 45.0%
GCCTACCCTCAATTCTATCA+GGG - chr1_2:52991781-52991800 None:intergenic 45.0%
AGCCTACCCTCAATTCTATC+AGG - chr1_2:52991782-52991801 None:intergenic 45.0%
ATTGAGGGTAGGCTTTACCA+CGG + chr1_2:52991788-52991807 Msa0076710:intron 45.0%
AATGGTGAAAGTCTTGCACC+GGG + chr1_2:52991815-52991834 Msa0076710:intron 45.0%
!! GATTCAAGAGCACCATGTTC+AGG + chr1_2:52991853-52991872 Msa0076710:intron 45.0%
TCACTGGAATCTCCTGAACA+TGG - chr1_2:52991868-52991887 None:intergenic 45.0%
GGTTTCGAATCAACGTTCAC+TGG - chr1_2:52991884-52991903 None:intergenic 45.0%
ATTGCCCCCCATGGTTATAA+GGG + chr1_2:52992103-52992122 Msa0076710:intron 45.0%
CAGCACACAACGCACATATT+TGG - chr1_2:52992244-52992263 None:intergenic 45.0%
CGAAGTAGCGTAACAGCAAA+AGG + chr1_2:52992978-52992997 Msa0076710:five_prime_UTR 45.0%
GCGTAACAGCAAAAGGAATG+TGG + chr1_2:52992985-52993004 Msa0076710:exon 45.0%
TGAAAGGCAGCACTTTCAAC+AGG + chr1_2:52993317-52993336 Msa0076710:CDS 45.0%
CAGATTGCATTTGGTCTCTG+AGG + chr1_2:52993474-52993493 Msa0076710:intron 45.0%
AGGATGAGAAGCTACCAGAA+TGG + chr1_2:52993861-52993880 Msa0076710:CDS 45.0%
CTCTACTTTCTTGTTGCTGG+AGG + chr1_2:52994509-52994528 Msa0076710:CDS 45.0%
TTGTTGCTGGAGGAACAATC+TGG + chr1_2:52994519-52994538 Msa0076710:CDS 45.0%
!! CTGACTCTTTTAGCTGATCC+TGG - chr1_2:52994714-52994733 None:intergenic 45.0%
CCTAGGAGCAGTAGAATCAT+AGG - chr1_2:52994815-52994834 None:intergenic 45.0%
CCTATGATTCTACTGCTCCT+AGG + chr1_2:52994812-52994831 Msa0076710:CDS 45.0%
TGGTGGAAGGTTCTTGTACT+TGG + chr1_2:52994978-52994997 Msa0076710:CDS 45.0%
GGAAGGTTCTTGTACTTGGA+AGG + chr1_2:52994982-52995001 Msa0076710:CDS 45.0%
GTTCTTGTACTTGGAAGGTG+TGG + chr1_2:52994987-52995006 Msa0076710:CDS 45.0%
!! GAGAGTAAAGTTTCTGGCAG+AGG + chr1_2:52995137-52995156 Msa0076710:CDS 45.0%
TGGGGAACTCGTAAGGTTTA+TGG + chr1_2:52995165-52995184 Msa0076710:CDS 45.0%
GGGGAACTCGTAAGGTTTAT+GGG + chr1_2:52995166-52995185 Msa0076710:CDS 45.0%
GGGAACTCGTAAGGTTTATG+GGG + chr1_2:52995167-52995186 Msa0076710:CDS 45.0%
CATGTGTCCCCAAATCATGT+GGG - chr1_2:52995197-52995216 None:intergenic 45.0%
TCATGTGTCCCCAAATCATG+TGG - chr1_2:52995198-52995217 None:intergenic 45.0%
ATTTGGGGACACATGATCCA+TGG + chr1_2:52995202-52995221 Msa0076710:CDS 45.0%
!! TGCAATTTGGTGTCGATGTG+TGG + chr1_2:52995328-52995347 Msa0076710:CDS 45.0%
!! AGCCAATTGATCGGCTTGAA+TGG - chr1_2:52995661-52995680 None:intergenic 45.0%
ATTCAAGCCGATCAATTGGC+TGG + chr1_2:52995660-52995679 Msa0076710:CDS 45.0%
TTCAAGCCGATCAATTGGCT+GGG + chr1_2:52995661-52995680 Msa0076710:CDS 45.0%
CAATGGTATACAGCATCCTC+AGG + chr1_2:52995684-52995703 Msa0076710:CDS 45.0%
GATCAAAAGTTCTCTCCGGA+AGG + chr1_2:52995734-52995753 Msa0076710:CDS 45.0%
GAAAGTTAAAGGCGGCAGAA+TGG + chr1_2:52995776-52995795 Msa0076710:CDS 45.0%
GTTTCATCCACCTTACCGTT+GGG - chr1_2:52995822-52995841 None:intergenic 45.0%
TATCTCTCGAGACTGCATAC+AGG - chr1_2:52995844-52995863 None:intergenic 45.0%
GTATGCAGTCTCGAGAGATA+TGG + chr1_2:52995844-52995863 Msa0076710:CDS 45.0%
GCTGCAACAATGATACTTGC+AGG + chr1_2:52995888-52995907 Msa0076710:CDS 45.0%
ACTTGCAGGAATGGAAGAAG+AGG + chr1_2:52995902-52995921 Msa0076710:CDS 45.0%
TATACCCTCAGCAGTTGTGA+AGG - chr1_2:52995928-52995947 None:intergenic 45.0%
!! GCTGAGGGTATATTTCTAGC+AGG + chr1_2:52995936-52995955 Msa0076710:CDS 45.0%
!! AGGGTATATTTCTAGCAGGC+TGG + chr1_2:52995940-52995959 Msa0076710:CDS 45.0%
CAAACAATCACTGATGGCAG+GGG - chr1_2:52995997-52996016 None:intergenic 45.0%
CACAAACAATCACTGATGGC+AGG - chr1_2:52995999-52996018 None:intergenic 45.0%
CTTTCTTGTGCATGTGTAGG+AGG + chr1_2:52996039-52996058 Msa0076710:intron 45.0%
!! ATACTGGTTTCAGACTCCAG+AGG + chr1_2:52996389-52996408 Msa0076710:CDS 45.0%
CCGTCAATTGTAAATGCCTC+TGG - chr1_2:52996408-52996427 None:intergenic 45.0%
ATCGGTCCCTCATATACATG+AGG + chr1_2:52996433-52996452 Msa0076710:CDS 45.0%
CAGTGGCCTCATGTATATGA+GGG - chr1_2:52996442-52996461 None:intergenic 45.0%
ACAGTGGCCTCATGTATATG+AGG - chr1_2:52996443-52996462 None:intergenic 45.0%
ACATGAGGCCACTGTCAATT+TGG + chr1_2:52996448-52996467 Msa0076710:CDS 45.0%
CATGAGGCCACTGTCAATTT+GGG + chr1_2:52996449-52996468 Msa0076710:CDS 45.0%
ATGAGGCCACTGTCAATTTG+GGG + chr1_2:52996450-52996469 Msa0076710:CDS 45.0%
TATGCCAAAGGCAGTACTTG+AGG + chr1_2:52996491-52996510 Msa0076710:CDS 45.0%
ATCCACCTATCTCCTGTTAG+AGG + chr1_2:52996540-52996559 Msa0076710:CDS 45.0%
ATCCTCCTCTAACAGGAGAT+AGG - chr1_2:52996548-52996567 None:intergenic 45.0%
! GGGTTAGTAACAGTGTGAAG+AGG - chr1_2:52996690-52996709 None:intergenic 45.0%
!! AGCTTCTCTACGAGAGTGTT+GGG - chr1_2:52996710-52996729 None:intergenic 45.0%
TAAAAATGGTGGTCAAGGGC+CGG + chr1_2:52996732-52996751 Msa0076710:three_prime_UTR 45.0%
TGCAAGCCATCTGCATCTCA+AGG + chr1_2:52987231-52987250 Msa0076710:five_prime_UTR 50.0%
GCAAGCCATCTGCATCTCAA+GGG + chr1_2:52987232-52987251 Msa0076710:five_prime_UTR 50.0%
CAAGCCATCTGCATCTCAAG+GGG + chr1_2:52987233-52987252 Msa0076710:five_prime_UTR 50.0%
AGGAGTGGCAGCATATCAAG+AGG + chr1_2:52987459-52987478 Msa0076710:intron 50.0%
! GGTGATGGTTCACATAGACC+AGG - chr1_2:52987519-52987538 None:intergenic 50.0%
! GCATATTTGGTGGGAGTTCG+AGG + chr1_2:52989322-52989341 Msa0076710:intron 50.0%
! GTCTGGCTCACCTACGAATA+TGG - chr1_2:52989700-52989719 None:intergenic 50.0%
! GGAGCTTTGGTCTTCCAAAG+GGG - chr1_2:52990235-52990254 None:intergenic 50.0%
! GGGAGCTTTGGTCTTCCAAA+GGG - chr1_2:52990236-52990255 None:intergenic 50.0%
! AGGGAGCTTTGGTCTTCCAA+AGG - chr1_2:52990237-52990256 None:intergenic 50.0%
GAAGACCAAAGCTCCCTCTA+TGG + chr1_2:52990240-52990259 Msa0076710:intron 50.0%
TGCCTTTCCCTGGACTACTT+TGG + chr1_2:52991138-52991157 Msa0076710:intron 50.0%
ATCATTGGTCGTACACACGC+GGG - chr1_2:52991181-52991200 None:intergenic 50.0%
GATCATTGGTCGTACACACG+CGG - chr1_2:52991182-52991201 None:intergenic 50.0%
CTATCCCATGCCTAAAAGCG+CGG - chr1_2:52991330-52991349 None:intergenic 50.0%
GTAGAGACTGCATCAGTGTG+TGG + chr1_2:52991444-52991463 Msa0076710:intron 50.0%
ACTGCATCAGTGTGTGGTAG+AGG + chr1_2:52991450-52991469 Msa0076710:intron 50.0%
TCAGTGTGTGGTAGAGGATG+TGG + chr1_2:52991456-52991475 Msa0076710:intron 50.0%
AGAACGACCCCAGTGTATGA+AGG + chr1_2:52991582-52991601 Msa0076710:intron 50.0%
ACCCCAGTGTATGAAGGAAG+TGG + chr1_2:52991588-52991607 Msa0076710:intron 50.0%
ATGGGGATGACATGATAGGG+TGG + chr1_2:52991691-52991710 Msa0076710:intron 50.0%
GCCCTGATAGAATTGAGGGT+AGG + chr1_2:52991777-52991796 Msa0076710:intron 50.0%
AATCAAGACATTGCCCCCCA+TGG + chr1_2:52992094-52992113 Msa0076710:intron 50.0%
CATTGCCCCCCATGGTTATA+AGG + chr1_2:52992102-52992121 Msa0076710:intron 50.0%
! TGCTGCGTAGGCATCTGTTT+TGG + chr1_2:52992259-52992278 Msa0076710:intron 50.0%
TGCTGTTACGCTACTTCGGT+CGG - chr1_2:52992976-52992995 None:intergenic 50.0%
AGTGTCTCTCCAGGTGATGA+GGG - chr1_2:52993202-52993221 None:intergenic 50.0%
TAGTGTCTCTCCAGGTGATG+AGG - chr1_2:52993203-52993222 None:intergenic 50.0%
!! TGCTGTTTCAGCTTCCGCAT+GGG + chr1_2:52993228-52993247 Msa0076710:CDS 50.0%
GTGTCAATGCATCATGAGCC+AGG - chr1_2:52993628-52993647 None:intergenic 50.0%
! TGCAGCTGACTCAACTGAGT+TGG - chr1_2:52994273-52994292 None:intergenic 50.0%
ACTCAGTTGAGTCAGCTGCA+TGG + chr1_2:52994273-52994292 Msa0076710:intron 50.0%
GCTGGAGGAACAATCTGGAT+AGG + chr1_2:52994524-52994543 Msa0076710:CDS 50.0%
GCAAAGTAGAGTCTGGCAGA+AGG - chr1_2:52994666-52994685 None:intergenic 50.0%
TCCTAGGGGACATAGTCACT+TGG + chr1_2:52994828-52994847 Msa0076710:CDS 50.0%
TCCAAGTGACTATGTCCCCT+AGG - chr1_2:52994832-52994851 None:intergenic 50.0%
CAAGCTGTCCTGTGTGAAGA+TGG + chr1_2:52995111-52995130 Msa0076710:CDS 50.0%
CTGTCCTGTGTGAAGATGGA+AGG + chr1_2:52995115-52995134 Msa0076710:CDS 50.0%
CTCTCCTTCCATCTTCACAC+AGG - chr1_2:52995122-52995141 None:intergenic 50.0%
!! AGTTTCTGGCAGAGGGAAAC+TGG + chr1_2:52995145-52995164 Msa0076710:CDS 50.0%
!! GTTTCTGGCAGAGGGAAACT+GGG + chr1_2:52995146-52995165 Msa0076710:CDS 50.0%
! TTTCTGGCAGAGGGAAACTG+GGG + chr1_2:52995147-52995166 Msa0076710:CDS 50.0%
CCATGTACTCCATTGCAGCT+CGG - chr1_2:52995362-52995381 None:intergenic 50.0%
CACAGTAAGCACTCACACCA+TGG - chr1_2:52995461-52995480 None:intergenic 50.0%
CATGGTGTGAGTGCTTACTG+TGG + chr1_2:52995459-52995478 Msa0076710:CDS 50.0%
GTGCTTACTGTGGTGGTCTT+TGG + chr1_2:52995469-52995488 Msa0076710:CDS 50.0%
TCTTCAAGCTGCAGCTGCAA+TGG + chr1_2:52995500-52995519 Msa0076710:CDS 50.0%
GCTGCAATGGCCATTCAACT+AGG + chr1_2:52995513-52995532 Msa0076710:CDS 50.0%
CCATTGCCCAGCCAATTGAT+CGG - chr1_2:52995670-52995689 None:intergenic 50.0%
AAAAAGAGAGGGAAGCCCTG+AGG - chr1_2:52995703-52995722 None:intergenic 50.0%
GTGAATGGCATGCATCCCAA+CGG + chr1_2:52995804-52995823 Msa0076710:CDS 50.0%
GGTTTCATCCACCTTACCGT+TGG - chr1_2:52995823-52995842 None:intergenic 50.0%
ATATGGGCAGGTGTGACCTA+CGG + chr1_2:52995861-52995880 Msa0076710:CDS 50.0%
CATTGTTGCAGCAACACCGT+AGG - chr1_2:52995880-52995899 None:intergenic 50.0%
! GGCTGGTCAGAAGAAGGATA+CGG + chr1_2:52995957-52995976 Msa0076710:CDS 50.0%
GCTGGTCAGAAGAAGGATAC+GGG + chr1_2:52995958-52995977 Msa0076710:CDS 50.0%
TGCATGCCCCAAATTGACAG+TGG - chr1_2:52996459-52996478 None:intergenic 50.0%
CTCCTCTAACAGGAGATAGG+TGG - chr1_2:52996545-52996564 None:intergenic 50.0%
CACCTATCTCCTGTTAGAGG+AGG + chr1_2:52996543-52996562 Msa0076710:CDS 50.0%
! CAGCTTCTCTACGAGAGTGT+TGG - chr1_2:52996711-52996730 None:intergenic 50.0%
AAAAATGGTGGTCAAGGGCC+GGG + chr1_2:52996733-52996752 Msa0076710:three_prime_UTR 50.0%
GGAACCCCTTGAGATGCAGA+TGG - chr1_2:52987240-52987259 None:intergenic 55.0%
GCATCTCAAGGGGTTCCACT+TGG + chr1_2:52987243-52987262 Msa0076710:five_prime_UTR 55.0%
TCTCAAGGGGTTCCACTTGG+AGG + chr1_2:52987246-52987265 Msa0076710:five_prime_UTR 55.0%
CTCAAGGGGTTCCACTTGGA+GGG + chr1_2:52987247-52987266 Msa0076710:five_prime_UTR 55.0%
TCATACCCCATCCCTCCAAG+TGG - chr1_2:52987261-52987280 None:intergenic 55.0%
ATATGCTGCCACTCCTGCGT+AGG - chr1_2:52987455-52987474 None:intergenic 55.0%
! TGGTTGGCCATGACAGGTGA+TGG - chr1_2:52987534-52987553 None:intergenic 55.0%
! GAGAACTGGTTGGCCATGAC+AGG - chr1_2:52987540-52987559 None:intergenic 55.0%
CCTACACCTTCATGCTGACC+GGG - chr1_2:52988631-52988650 None:intergenic 55.0%
CCCTACACCTTCATGCTGAC+CGG - chr1_2:52988632-52988651 None:intergenic 55.0%
! CCGGTCAGCATGAAGGTGTA+GGG + chr1_2:52988629-52988648 Msa0076710:intron 55.0%
GGTGGGAACTCTCACTTGTC+AGG + chr1_2:52990786-52990805 Msa0076710:five_prime_UTR 55.0%
AGAGCTGAAGATGGCGTCTC+CGG + chr1_2:52990931-52990950 Msa0076710:intron 55.0%
! TTGGTCCGCGCTTTTAGGCA+TGG + chr1_2:52991322-52991341 Msa0076710:intron 55.0%
! TGGTCCGCGCTTTTAGGCAT+GGG + chr1_2:52991323-52991342 Msa0076710:intron 55.0%
! TGGTGTGCCAGACACTGGTT+CGG + chr1_2:52991608-52991627 Msa0076710:intron 55.0%
!! ACACTGGTTCGGCTGGTACA+AGG + chr1_2:52991619-52991638 Msa0076710:intron 55.0%
AGCGATGCAGATGATCCTCC+AGG - chr1_2:52992062-52992081 None:intergenic 55.0%
ATGTGCGTTGTGTGCTGCGT+AGG + chr1_2:52992247-52992266 Msa0076710:intron 55.0%
GCAGCACATAGTGTCTCTCC+AGG - chr1_2:52993211-52993230 None:intergenic 55.0%
!! CTGCTGTTTCAGCTTCCGCA+TGG + chr1_2:52993227-52993246 Msa0076710:CDS 55.0%
TGTTTCAGCTTCCGCATGGG+TGG + chr1_2:52993231-52993250 Msa0076710:CDS 55.0%
GGGAAACTGGGGAACTCGTA+AGG + chr1_2:52995158-52995177 Msa0076710:CDS 55.0%
TGGGGCTGTCCCACATGATT+TGG + chr1_2:52995185-52995204 Msa0076710:CDS 55.0%
GGGGCTGTCCCACATGATTT+GGG + chr1_2:52995186-52995205 Msa0076710:CDS 55.0%
GGGCTGTCCCACATGATTTG+GGG + chr1_2:52995187-52995206 Msa0076710:CDS 55.0%
CCGAGCTGCAATGGAGTACA+TGG + chr1_2:52995359-52995378 Msa0076710:CDS 55.0%
GGTGTGAGTGCTTACTGTGG+TGG + chr1_2:52995462-52995481 Msa0076710:CDS 55.0%
CCGATCAATTGGCTGGGCAA+TGG + chr1_2:52995667-52995686 Msa0076710:CDS 55.0%
! GGCAGAATGGGTGCTGTGAA+TGG + chr1_2:52995789-52995808 Msa0076710:CDS 55.0%
TGGCATGCATCCCAACGGTA+AGG + chr1_2:52995809-52995828 Msa0076710:CDS 55.0%
CATGCATCCCAACGGTAAGG+TGG + chr1_2:52995812-52995831 Msa0076710:CDS 55.0%
CAGTCTCGAGAGATATGGGC+AGG + chr1_2:52995849-52995868 Msa0076710:CDS 55.0%
AGAGGCCTTCACAACTGCTG+AGG + chr1_2:52995920-52995939 Msa0076710:CDS 55.0%
GAGGCCTTCACAACTGCTGA+GGG + chr1_2:52995921-52995940 Msa0076710:CDS 55.0%
! CTAGCAGGCTGGTCAGAAGA+AGG + chr1_2:52995951-52995970 Msa0076710:CDS 55.0%
AAAATGGTGGTCAAGGGCCG+GGG + chr1_2:52996734-52996753 Msa0076710:three_prime_UTR 55.0%
AGGGGTTCCACTTGGAGGGA+TGG + chr1_2:52987251-52987270 Msa0076710:five_prime_UTR 60.0%
GGGGTTCCACTTGGAGGGAT+GGG + chr1_2:52987252-52987271 Msa0076710:five_prime_UTR 60.0%
GGGTTCCACTTGGAGGGATG+GGG + chr1_2:52987253-52987272 Msa0076710:five_prime_UTR 60.0%
TTGGCTCCCGGTCAGCATGA+AGG + chr1_2:52988622-52988641 Msa0076710:intron 60.0%
! CCCGGTCAGCATGAAGGTGT+AGG + chr1_2:52988628-52988647 Msa0076710:intron 60.0%
GGAAGTGGTGTGCCAGACAC+TGG + chr1_2:52991603-52991622 Msa0076710:intron 60.0%
GTACCAGCCGAACCAGTGTC+TGG - chr1_2:52991618-52991637 None:intergenic 60.0%
CGATTGTAGGGGGTTCCCGA+AGG + chr1_2:52991738-52991757 Msa0076710:intron 60.0%
CGGTCGGACAGCCCAAAACA+TGG - chr1_2:52992960-52992979 None:intergenic 60.0%
! CCAGGTGATGAGGGCATGCT+GGG - chr1_2:52993193-52993212 None:intergenic 60.0%
! TCCAGGTGATGAGGGCATGC+TGG - chr1_2:52993194-52993213 None:intergenic 60.0%
TCCATGGGGTTCCACCCATG+CGG - chr1_2:52993245-52993264 None:intergenic 60.0%
TGAGAGAGCTGCAGTGCACC+TGG + chr1_2:52993607-52993626 Msa0076710:CDS 60.0%
TCCATTGCAGCTCGGACAGC+AGG - chr1_2:52995354-52995373 None:intergenic 60.0%
! GGGGCCTCAAGTACTGCCTT+TGG - chr1_2:52996498-52996517 None:intergenic 60.0%
!! GTGCCAGACACTGGTTCGGC+TGG + chr1_2:52991612-52991631 Msa0076710:intron 65.0%
CCCAGCATGCCCTCATCACC+TGG + chr1_2:52993190-52993209 Msa0076710:CDS 65.0%
TCCGCATGGGTGGAACCCCA+TGG + chr1_2:52993241-52993260 Msa0076710:CDS 65.0%
GCCTGCTGTCCGAGCTGCAA+TGG + chr1_2:52995350-52995369 Msa0076710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52987208 52996972 52987208 ID=Msa0076710;Name=Msa0076710
chr1_2 mRNA 52987208 52996972 52987208 ID=Msa0076710-mRNA-1;Parent=Msa0076710;Name=Msa0076710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=684|0.92|1|1|0.84|0.78|14|325|657
chr1_2 exon 52987208 52987274 52987208 ID=Msa0076710-mRNA-1:exon:16362;Parent=Msa0076710-mRNA-1
chr1_2 exon 52987461 52987560 52987461 ID=Msa0076710-mRNA-1:exon:16363;Parent=Msa0076710-mRNA-1
chr1_2 exon 52989516 52989625 52989516 ID=Msa0076710-mRNA-1:exon:16364;Parent=Msa0076710-mRNA-1
chr1_2 exon 52989709 52989812 52989709 ID=Msa0076710-mRNA-1:exon:16365;Parent=Msa0076710-mRNA-1
chr1_2 exon 52990630 52990683 52990630 ID=Msa0076710-mRNA-1:exon:16366;Parent=Msa0076710-mRNA-1
chr1_2 exon 52990777 52990832 52990777 ID=Msa0076710-mRNA-1:exon:16367;Parent=Msa0076710-mRNA-1
chr1_2 exon 52990933 52991004 52990933 ID=Msa0076710-mRNA-1:exon:16368;Parent=Msa0076710-mRNA-1
chr1_2 exon 52992881 52993022 52992881 ID=Msa0076710-mRNA-1:exon:16369;Parent=Msa0076710-mRNA-1
chr1_2 exon 52993154 52993338 52993154 ID=Msa0076710-mRNA-1:exon:16370;Parent=Msa0076710-mRNA-1
chr1_2 exon 52993580 52993647 52993580 ID=Msa0076710-mRNA-1:exon:16371;Parent=Msa0076710-mRNA-1
chr1_2 exon 52993810 52993882 52993810 ID=Msa0076710-mRNA-1:exon:16372;Parent=Msa0076710-mRNA-1
chr1_2 exon 52994484 52994545 52994484 ID=Msa0076710-mRNA-1:exon:16373;Parent=Msa0076710-mRNA-1
chr1_2 exon 52994674 52995979 52994674 ID=Msa0076710-mRNA-1:exon:16374;Parent=Msa0076710-mRNA-1
chr1_2 exon 52996389 52996972 52996389 ID=Msa0076710-mRNA-1:exon:16375;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52987208 52987274 52987208 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52987461 52987560 52987461 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52989516 52989625 52989516 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52989709 52989812 52989709 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52990630 52990683 52990630 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52990777 52990832 52990777 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52990933 52991004 52990933 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 five_prime_UTR 52992881 52993001 52992881 ID=Msa0076710-mRNA-1:five_prime_utr;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52993002 52993022 52993002 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52993154 52993338 52993154 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52993580 52993647 52993580 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52993810 52993882 52993810 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52994484 52994545 52994484 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52994674 52995979 52994674 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 CDS 52996389 52996647 52996389 ID=Msa0076710-mRNA-1:cds;Parent=Msa0076710-mRNA-1
chr1_2 three_prime_UTR 52996648 52996972 52996648 ID=Msa0076710-mRNA-1:three_prime_utr;Parent=Msa0076710-mRNA-1
Gene Sequence

>Msa0076710

ATGTGGACTAAAATGGTGAAGGATGGGCAATTTGATCGGGAAAATTTCTCTTCTGGACCCAGCATGCCCTCATCACCTGGAGAGACACTATGTGCTGCTGTTTCAGCTTCCGCATGGGTGGAACCCCATGGAAAATGTACTGTTGCATTTAGTCTTGCATGGTCATCTCCGAAAGTGAAGTTTGTGAAAGGCAGCACTTTCAACAGGAGATATACAAAATTTTATGGGACTTCTGAGAGAGCTGCAGTGCACCTGGCTCATGATGCATTGACACATTATACACGGTGGGAAGAAGAGATTGCAAAATGGCAGGATCCTATTCTTAAGGATGAGAAGCTACCAGAATGGTACAAGTTTACATTATTTAACGAACTCTACTTTCTTGTTGCTGGAGGAACAATCTGGATAGACTCTACTTTGCTATCTTCAAAAATGAGAAATAATAGCCAGGATCAGCTAAAAGAGTCAGAAAATGCAGTAGTCCGAATAACTGAAGCTAAAGTGGACTGTAGAAAAAGAGAAGTTGTTGAGTGTACAACAGATAATTCCTATGATTCTACTGCTCCTAGGGGACATAGTCACTTGGATGAAAAACATAATAGAGATACATCCCATGAATATGGAACCGTGAATACTCTCAGAAACGGAAACTCTGCTAACACTCTGCATCGTTCAACAATGAAGAATCTACAACATGATGATGATAATGATGATGGTGGAAGGTTCTTGTACTTGGAAGGTGTGGAATATGTCATGTGGTGCACATATGATGTGCACTTCTATGCTTCATTTGCGCTTCTTATGCTCTTTCCTCGTATTGAATTAAATATACAACGCGATTTTGCTCAAGCTGTCCTGTGTGAAGATGGAAGGAGAGTAAAGTTTCTGGCAGAGGGAAACTGGGGAACTCGTAAGGTTTATGGGGCTGTCCCACATGATTTGGGGACACATGATCCATGGCATGAAATGAATGCTTATAACATTCATGATACTAGTAAGTGGAAAGACCTGAACCCAAAATTTGTACTTCAGGTGTATCGAGATTTTTCTGCAACAGGTGATTTGCAATTTGGTGTCGATGTGTGGCCTGCTGTCCGAGCTGCAATGGAGTACATGGAGCAATTCGATAGAGATGCTGATGGTCTTATTGAGAATGATGGTTTCCCTGATCAAACATATGATACATGGACTGTCCATGGTGTGAGTGCTTACTGTGGTGGTCTTTGGCTTGCTGCTCTTCAAGCTGCAGCTGCAATGGCCATTCAACTAGGTGACAGAGATTTTGCGGAAACATGCAAAAGGAAGTTTCTGAAGGCTAAGCCAGTATATGAACAAAAGCTGTGGAATGGTTCTTATTTTAACTATGACAGTGGATCAAGTAGTAACAGTAAATCCATTCAAGCCGATCAATTGGCTGGGCAATGGTATACAGCATCCTCAGGGCTTCCCTCTCTTTTTGATGATTTCAAGATCAAAAGTTCTCTCCGGAAGGTTTTTGATTTCAATGTGATGAAAGTTAAAGGCGGCAGAATGGGTGCTGTGAATGGCATGCATCCCAACGGTAAGGTGGATGAAACCTGTATGCAGTCTCGAGAGATATGGGCAGGTGTGACCTACGGTGTTGCTGCAACAATGATACTTGCAGGAATGGAAGAAGAGGCCTTCACAACTGCTGAGGGTATATTTCTAGCAGGCTGGTCAGAAGAAGGATACGGATACTGGTTTCAGACTCCAGAGGCATTTACAATTGACGGGCACTATCGGTCCCTCATATACATGAGGCCACTGTCAATTTGGGGCATGCAATATGCATTAACTATGCCAAAGGCAGTACTTGAGGCCCCTAAAATTAACTTCATGGACAGAATCCACCTATCTCCTGTTAGAGGAGGATTACATAAAGAAACAGGTGTGAAAAAGATTGCAACGAAAACAAAGTGCTTTAGCAGTTCTGTGTTTAATTGTGCTTGCTGA
Protein sequence

>Msa0076710

MWTKMVKDGQFDRENFSSGPSMPSSPGETLCAAVSASAWVEPHGKCTVAFSLAWSSPKVKFVKGSTFNRRYTKFYGTSERAAVHLAHDALTHYTRWEEEIAKWQDPILKDEKLPEWYKFTLFNELYFLVAGGTIWIDSTLLSSKMRNNSQDQLKESENAVVRITEAKVDCRKREVVECTTDNSYDSTAPRGHSHLDEKHNRDTSHEYGTVNTLRNGNSANTLHRSTMKNLQHDDDNDDGGRFLYLEGVEYVMWCTYDVHFYASFALLMLFPRIELNIQRDFAQAVLCEDGRRVKFLAEGNWGTRKVYGAVPHDLGTHDPWHEMNAYNIHDTSKWKDLNPKFVLQVYRDFSATGDLQFGVDVWPAVRAAMEYMEQFDRDADGLIENDGFPDQTYDTWTVHGVSAYCGGLWLAALQAAAAMAIQLGDRDFAETCKRKFLKAKPVYEQKLWNGSYFNYDSGSSSNSKSIQADQLAGQWYTASSGLPSLFDDFKIKSSLRKVFDFNVMKVKGGRMGAVNGMHPNGKVDETCMQSREIWAGVTYGVAATMILAGMEEEAFTTAEGIFLAGWSEEGYGYWFQTPEAFTIDGHYRSLIYMRPLSIWGMQYALTMPKAVLEAPKINFMDRIHLSPVRGGLHKETGVKKIATKTKCFSSSVFNCAC*