AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124650 MtrunA17_Chr1g0185871 94.040 302 10 2 1 302 1 294 0.0 586
Msa0124650 MtrunA17_Chr0c12g0493661 52.985 268 109 5 37 302 31 283 2.44e-90 288
Msa0124650 MtrunA17_Chr4g0076991 48.881 268 101 6 37 302 31 264 1.97e-79 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124650 AT3G24180.1 78.378 296 53 2 7 302 1 285 3.89e-169 494
Msa0124650 AT3G24180.2 78.378 296 53 2 7 302 1 285 3.89e-169 494
Msa0124650 AT5G49900.3 52.060 267 114 3 36 302 23 275 3.07e-93 296
Msa0124650 AT5G49900.1 52.060 267 114 3 36 302 23 275 3.07e-93 296
Msa0124650 AT4G10060.1 46.909 275 132 4 28 302 8 268 1.53e-78 257
Msa0124650 AT4G10060.2 46.909 275 132 4 28 302 8 268 1.53e-78 257
Msa0124650 AT1G33700.4 49.813 267 128 4 36 302 13 273 1.56e-78 256
Msa0124650 AT1G33700.3 49.813 267 128 4 36 302 13 273 5.81e-78 256
Msa0124650 AT1G33700.1 49.813 267 128 4 36 302 13 273 5.81e-78 256
Msa0124650 AT1G33700.2 49.813 267 128 4 36 302 13 273 5.81e-78 256

Find 266 sgRNAs with CRISPR-Local

Find 756 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACCTGAAGTACAAATTT+TGG 0.115897 1_3:-52500271 None:intergenic
ACATGAGGCCACTGTCAATT+TGG 0.167305 1_3:+52501440 Msa0124650:three_prime_UTR
TGGGGAACTCGTAAGGTTTA+TGG 0.186018 1_3:+52500157 Msa0124650:three_prime_UTR
TGGGGCTGTCCCACATGATT+TGG 0.240059 1_3:+52500177 Msa0124650:three_prime_UTR
GGGGCTGTCCCACATGATTT+GGG 0.240329 1_3:+52500178 Msa0124650:three_prime_UTR
GATCGGGAAAATTTCTCTTC+TGG 0.243513 1_3:+52498155 Msa0124650:three_prime_UTR
GCAACAGGTGATTTGCAATT+TGG 0.258666 1_3:+52500307 Msa0124650:three_prime_UTR
TAGAATATATCTTGGGATTT+GGG 0.266914 1_3:-52501847 None:intergenic
TTAGAATATATCTTGGGATT+TGG 0.269030 1_3:-52501848 None:intergenic
GTGCTTACTGTGGTGGTCTT+TGG 0.276640 1_3:+52500461 Msa0124650:three_prime_UTR
TCTAAATTCTTTAAGAAGAT+TGG 0.284924 1_3:-52491738 None:intergenic
TTCAATGTGATGAAAGTTAA+AGG 0.285157 1_3:+52500757 Msa0124650:three_prime_UTR
TGGAAGGAGAGTAAAGTTTC+TGG 0.290455 1_3:+52500123 Msa0124650:three_prime_UTR
AGTTTCTGGCAGAGGGAAAC+TGG 0.296329 1_3:+52500137 Msa0124650:three_prime_UTR
CATGAGGCCACTGTCAATTT+GGG 0.306263 1_3:+52501441 Msa0124650:three_prime_UTR
CCACTTTAGCTTCAGTTATT+CGG 0.312015 1_3:-52499739 None:intergenic
CTTCTTCTCCAAGCTTGTTC+AGG 0.312960 1_3:-52491701 None:intergenic
TCCAGGTGATGAGGGCATGC+TGG 0.316468 1_3:-52498180 None:intergenic
TTACCGCCCAAGTAAATAAA+AGG 0.316621 1_3:-52495655 None:intergenic
CCACGCTGACTCGGTGTTAC+AGG 0.326472 1_3:+52490696 Msa0124650:five_prime_UTR
GGGGAACTCGTAAGGTTTAT+GGG 0.328245 1_3:+52500158 Msa0124650:three_prime_UTR
TGTTATTGTTATGAGAGATT+TGG 0.328720 1_3:+52490990 Msa0124650:exon
TTATGAAAATCGCGAGATAT+TGG 0.335368 1_3:-52490764 None:intergenic
TTATGTAATCCTCCTCTAAC+AGG 0.337687 1_3:-52501544 None:intergenic
TTGAAATTCCAGGTTCGATT+AGG 0.338785 1_3:+52491966 Msa0124650:intron
AGAGATACATCCCATGAATA+TGG 0.344504 1_3:+52499857 Msa0124650:three_prime_UTR
GGCCCCTAAAATTAACTTCA+TGG 0.344736 1_3:+52501504 Msa0124650:three_prime_UTR
AAAAGGAATGTGGACTAAAA+TGG 0.348084 1_3:+52497984 Msa0124650:three_prime_UTR
TCATGGGGATGGAATCTAAA+TGG 0.351315 1_3:+52494540 Msa0124650:CDS
GAACTCTACTTTCTTGTTGC+TGG 0.357509 1_3:+52499498 Msa0124650:three_prime_UTR
TAAACTAAGAATTACCATTC+TGG 0.363223 1_3:-52498862 None:intergenic
TTGTTGCTGGAGGAACAATT+TGG 0.366760 1_3:+52499511 Msa0124650:three_prime_UTR
AACCGTCATATATAGCTATA+AGG 0.379301 1_3:-52495975 None:intergenic
CCTTTCACAAACTTCACTTT+CGG 0.380322 1_3:-52498290 None:intergenic
GGGGCCTCAAGTACTGCCTT+TGG 0.382148 1_3:-52501487 None:intergenic
CATGTATCATATGTTTGATC+AGG 0.387198 1_3:-52500421 None:intergenic
GATCTTGTGCAGAATTCTAT+TGG 0.388602 1_3:+52495755 Msa0124650:intron
AAGATCGTTGAACAATATCT+AGG 0.389015 1_3:+52490921 Msa0124650:five_prime_UTR
TATTCACGGTTCCATATTCA+TGG 0.391907 1_3:-52499868 None:intergenic
GCAGTAACAGTGGCATAAAA+TGG 0.395889 1_3:-52493984 None:intergenic
AGGGGTTCCACTTGGAGGGA+TGG 0.398673 1_3:+52492239 Msa0124650:CDS
GTATGCAGTCTCGAGAGATA+TGG 0.400049 1_3:+52500836 Msa0124650:three_prime_UTR
CCAGGTGATGAGGGCATGCT+GGG 0.407317 1_3:-52498179 None:intergenic
TAGCAGGAAAGCTGATGATC+AGG 0.407661 1_3:+52494509 Msa0124650:CDS
TATGAGAGATTTGGAAAGAA+TGG 0.409194 1_3:+52490999 Msa0124650:exon
GATGAATTTAGAATATATCT+TGG 0.410388 1_3:-52501855 None:intergenic
CCGAATAACTGAAGCTAAAG+TGG 0.411606 1_3:+52499739 Msa0124650:three_prime_UTR
AGCTTCTCTACGAGAGTGTT+GGG 0.413362 1_3:-52501699 None:intergenic
TGTAATTATGTGGTATGAAA+GGG 0.414470 1_3:-52494742 None:intergenic
TACGAATGTGGTCATATGTC+AGG 0.415745 1_3:+52491991 Msa0124650:CDS
ATCCACCTATCTCCTGTTAG+AGG 0.417590 1_3:+52501532 Msa0124650:three_prime_UTR
CCCAGCATGCCCTCATCACC+TGG 0.423292 1_3:+52498179 Msa0124650:three_prime_UTR
AGCCAATTGATCGGCTTGAA+TGG 0.427786 1_3:-52500650 None:intergenic
TCCGTTTCTGAGAGTATTCA+CGG 0.428112 1_3:-52499882 None:intergenic
GAACCCAAAATTTGTACTTC+AGG 0.429676 1_3:+52500267 Msa0124650:three_prime_UTR
GGGGTTCCACTTGGAGGGAT+GGG 0.431136 1_3:+52492240 Msa0124650:CDS
ATCCATTCAAGCCGATCAAT+TGG 0.432522 1_3:+52500648 Msa0124650:three_prime_UTR
ATGGCAGGATCCTATTCTTA+AGG 0.433320 1_3:+52498828 Msa0124650:three_prime_UTR
AGACAATGGCAAATCATTCC+TGG 0.434302 1_3:+52492487 Msa0124650:CDS
GGAGGATTACATAAAGAAAC+AGG 0.434463 1_3:+52501553 Msa0124650:three_prime_UTR
AGAGCTGAAGATGGCGTCTC+CGG 0.438417 1_3:+52495921 Msa0124650:intron
TGAAAGGCAGCACTTTCAAC+AGG 0.441957 1_3:+52498306 Msa0124650:three_prime_UTR
ATGCTTTGTTTCCAAGAGCT+TGG 0.444285 1_3:+52494580 Msa0124650:CDS
TGCTGTTTCAGCTTCCGCAT+GGG 0.448130 1_3:+52498217 Msa0124650:three_prime_UTR
CTATGATTCTACTGCTCCTA+GGG 0.448143 1_3:+52499805 Msa0124650:three_prime_UTR
CCTATGATTCTACTGCTCCT+AGG 0.449205 1_3:+52499804 Msa0124650:three_prime_UTR
TCTCGAGTGAAAGGATCTAT+AGG 0.449861 1_3:-52492192 None:intergenic
TTCGCCACGCCACGCTGACT+CGG 0.451063 1_3:+52490687 Msa0124650:five_prime_UTR
AGCATATCAAGAGGATTTAG+AGG 0.452153 1_3:+52492457 Msa0124650:CDS
CAATGGTATACAGCATCCTC+AGG 0.452922 1_3:+52500676 Msa0124650:three_prime_UTR
ATGAATTTAGAATATATCTT+GGG 0.454196 1_3:-52501854 None:intergenic
CTTCTCCAAGCTTGTTCAGG+AGG 0.456855 1_3:-52491698 None:intergenic
AAATGAGACTTACAGAGAAC+TGG 0.459619 1_3:-52492540 None:intergenic
CGAAGTAGCGTAACAGCAAA+AGG 0.462013 1_3:+52497967 Msa0124650:three_prime_UTR
TCCATTGCAGCTCGGACAGC+AGG 0.462620 1_3:-52500343 None:intergenic
CTGCTGTTTCAGCTTCCGCA+TGG 0.463351 1_3:+52498216 Msa0124650:three_prime_UTR
TGGTGGAAGGTTCTTGTACT+TGG 0.463613 1_3:+52499970 Msa0124650:three_prime_UTR
TGCTGTTACGCTACTTCGGT+CGG 0.464082 1_3:-52497962 None:intergenic
TCATAAACAGTCCAAGCTCT+TGG 0.465016 1_3:-52494591 None:intergenic
GCTGCAACAATGATACTTGC+AGG 0.465363 1_3:+52500880 Msa0124650:three_prime_UTR
GCCTGCTGTCCGAGCTGCAA+TGG 0.466643 1_3:+52500342 Msa0124650:three_prime_UTR
TGAGAGAGCTGCAGTGCACC+TGG 0.469761 1_3:+52498594 Msa0124650:three_prime_UTR
TAAGGATGGGCAATTTGATC+GGG 0.470665 1_3:+52498139 Msa0124650:intron
GGGTTCCACTTGGAGGGATG+GGG 0.471807 1_3:+52492241 Msa0124650:CDS
CTGTAATTATGTGGTATGAA+AGG 0.472855 1_3:-52494743 None:intergenic
CCAGAGGCATTTACAATTGA+CGG 0.473164 1_3:+52501397 Msa0124650:three_prime_UTR
TTCATTGTAGAAAGAATTCG+TGG 0.473789 1_3:+52491037 Msa0124650:CDS
CTGCTCCTCCTGAACAAGCT+TGG 0.474967 1_3:+52491693 Msa0124650:CDS
CAAGCTGTCCTGTGTGAAGA+TGG 0.475037 1_3:+52500103 Msa0124650:three_prime_UTR
ATTCAAGCCGATCAATTGGC+TGG 0.479609 1_3:+52500652 Msa0124650:three_prime_UTR
CTGCTTTCTCTGTAATTATG+TGG 0.483079 1_3:-52494752 None:intergenic
AAAGTTAAAGGCGGCAGAAT+GGG 0.484438 1_3:+52500769 Msa0124650:three_prime_UTR
TAAGCATTCATTTCATGCCA+TGG 0.484899 1_3:-52500211 None:intergenic
ACAGTGGCCTCATGTATATG+AGG 0.485361 1_3:-52501432 None:intergenic
CCTAGGAGCAGTAGAATCAT+AGG 0.487066 1_3:-52499804 None:intergenic
TATGCAGTCTCGAGAGATAT+GGG 0.488836 1_3:+52500837 Msa0124650:three_prime_UTR
GGTGGGAACTCTCACTTGTC+AGG 0.489914 1_3:+52495776 Msa0124650:CDS
TTCATTCACAGAGCTGAAGA+TGG 0.492280 1_3:+52495912 Msa0124650:intron
ATCTCTGTCACCTAGTTGAA+TGG 0.494181 1_3:-52500515 None:intergenic
TCTCAAGGGGTTCCACTTGG+AGG 0.494410 1_3:+52492234 Msa0124650:CDS
TTAAGGATGGGCAATTTGAT+CGG 0.495077 1_3:+52498138 Msa0124650:intron
CCGAGCTGCAATGGAGTACA+TGG 0.495164 1_3:+52500351 Msa0124650:three_prime_UTR
AACATAACATACCAACTGTA+AGG 0.499287 1_3:-52491088 None:intergenic
TCTTCAAGCTGCAGCTGCAA+TGG 0.499649 1_3:+52500492 Msa0124650:three_prime_UTR
GGGAAGAAGAGATTGCAAAA+TGG 0.500460 1_3:+52498809 Msa0124650:three_prime_UTR
CCGTCAATTGTAAATGCCTC+TGG 0.500631 1_3:-52501397 None:intergenic
CAGCTTCTCTACGAGAGTGT+TGG 0.501196 1_3:-52501700 None:intergenic
AGCTTCTCATCCTTAAGAAT+AGG 0.503401 1_3:-52498838 None:intergenic
ATGATCAGGGTATATCATCA+TGG 0.507713 1_3:+52494523 Msa0124650:CDS
GGCAGAATGGGTGCTGTGAA+TGG 0.507901 1_3:+52500781 Msa0124650:three_prime_UTR
TTGCAACTTTCTCGAGTGAA+AGG 0.510427 1_3:-52492201 None:intergenic
GTTTCATCCACCTTACCGTT+GGG 0.511276 1_3:-52500811 None:intergenic
GAGAACTGGTTGGCCATGAC+AGG 0.513003 1_3:-52492526 None:intergenic
ATCCTCCTCTAACAGGAGAT+AGG 0.513477 1_3:-52501537 None:intergenic
GATGGTCTTATTGAGAATGA+TGG 0.516775 1_3:+52500394 Msa0124650:three_prime_UTR
AAATCGCGAGATATTGGATT+GGG 0.518761 1_3:-52490758 None:intergenic
CTGATCAAACATATGATACA+TGG 0.520231 1_3:+52500422 Msa0124650:three_prime_UTR
GGCTGGTCAGAAGAAGGATA+CGG 0.520711 1_3:+52500949 Msa0124650:three_prime_UTR
CTCTACTTTCTTGTTGCTGG+AGG 0.522845 1_3:+52499501 Msa0124650:three_prime_UTR
GTGTCAATGCATCATGAGCC+AGG 0.526121 1_3:-52498612 None:intergenic
GAAAGTTAAAGGCGGCAGAA+TGG 0.527675 1_3:+52500768 Msa0124650:three_prime_UTR
ACCGTGAATACTCTCAGAAA+CGG 0.528941 1_3:+52499881 Msa0124650:three_prime_UTR
TGCAATTTGGTGTCGATGTG+TGG 0.529941 1_3:+52500320 Msa0124650:three_prime_UTR
TCAAGATCAAAAGTTCTCTC+CGG 0.530516 1_3:+52500722 Msa0124650:three_prime_UTR
AAAATGGTGGTCAAGGGCCG+GGG 0.531144 1_3:+52501726 Msa0124650:three_prime_UTR
GGTTTCATCCACCTTACCGT+TGG 0.531435 1_3:-52500812 None:intergenic
CAGAGGCATTTACAATTGAC+GGG 0.533907 1_3:+52501398 Msa0124650:three_prime_UTR
CATGAATTAATTATTTCAGA+AGG 0.533955 1_3:+52501934 Msa0124650:three_prime_UTR
GCATCTCAAGGGGTTCCACT+TGG 0.534772 1_3:+52492231 Msa0124650:CDS
CTGTTGCATTTAGTCTTGCA+TGG 0.535873 1_3:+52498261 Msa0124650:three_prime_UTR
GTCAGGGAAGAGGCTTCTCA+TGG 0.537322 1_3:+52492008 Msa0124650:CDS
CTAGCAGGCTGGTCAGAAGA+AGG 0.537501 1_3:+52500943 Msa0124650:three_prime_UTR
TGATCAGGGTATATCATCAT+GGG 0.539292 1_3:+52494524 Msa0124650:CDS
ATTCTTTAAGAAGATTGGCA+TGG 0.539896 1_3:-52491733 None:intergenic
GTTTCTGGCAGAGGGAAACT+GGG 0.542995 1_3:+52500138 Msa0124650:three_prime_UTR
GCTGAGGGTATATTTCTAGC+AGG 0.543807 1_3:+52500928 Msa0124650:three_prime_UTR
TTACAATTGACGGGCACTAT+CGG 0.545338 1_3:+52501407 Msa0124650:three_prime_UTR
GAGAGTAAAGTTTCTGGCAG+AGG 0.545432 1_3:+52500129 Msa0124650:three_prime_UTR
GGAAGGTTCTTGTACTTGGA+AGG 0.545489 1_3:+52499974 Msa0124650:three_prime_UTR
AACAATGATACTTGCAGGAA+TGG 0.546051 1_3:+52500885 Msa0124650:three_prime_UTR
CTCTCCGTAGCGATCCGAGT+TGG 0.547095 1_3:+52490648 Msa0124650:five_prime_UTR
TGCAAGCCATCTGCATCTCA+AGG 0.547185 1_3:+52492219 Msa0124650:CDS
GGGAAGAGGCTTCTCATGGA+AGG 0.551137 1_3:+52492012 Msa0124650:CDS
AGAAGAGATTGCAAAATGGC+AGG 0.552563 1_3:+52498813 Msa0124650:three_prime_UTR
AGGGTATATCATCATGGGGA+TGG 0.552996 1_3:+52494529 Msa0124650:CDS
AGAGCTTGGACTGTTTATGA+TGG 0.553201 1_3:+52494594 Msa0124650:CDS
GGGAAACTGGGGAACTCGTA+AGG 0.554907 1_3:+52500150 Msa0124650:three_prime_UTR
CTCAAGGGGTTCCACTTGGA+GGG 0.555712 1_3:+52492235 Msa0124650:CDS
AAAATCGCGAGATATTGGAT+TGG 0.558031 1_3:-52490759 None:intergenic
TAGTGTCTCTCCAGGTGATG+AGG 0.558574 1_3:-52498189 None:intergenic
CCGATCAATTGGCTGGGCAA+TGG 0.559132 1_3:+52500659 Msa0124650:three_prime_UTR
ACATTCATGATACTAGTAAG+TGG 0.559226 1_3:+52500236 Msa0124650:three_prime_UTR
AGGGTATATTTCTAGCAGGC+TGG 0.559806 1_3:+52500932 Msa0124650:three_prime_UTR
GCTGGAGGAACAATTTGGAT+AGG 0.560165 1_3:+52499516 Msa0124650:three_prime_UTR
CAGTCTCGAGAGATATGGGC+AGG 0.560172 1_3:+52500841 Msa0124650:three_prime_UTR
TTGTGCAGAATTCTATTGGT+GGG 0.560692 1_3:+52495759 Msa0124650:intron
TATCTCTCGAGACTGCATAC+AGG 0.561033 1_3:-52500833 None:intergenic
TTCAAGCCGATCAATTGGCT+GGG 0.565771 1_3:+52500653 Msa0124650:three_prime_UTR
GTTCTTGTACTTGGAAGGTG+TGG 0.567369 1_3:+52499979 Msa0124650:three_prime_UTR
GGAATTTGCAATCTGTGTTG+TGG 0.570782 1_3:+52490962 Msa0124650:five_prime_UTR
AGTGTCTCTCCAGGTGATGA+GGG 0.572454 1_3:-52498188 None:intergenic
CCATGTACTCCATTGCAGCT+CGG 0.573822 1_3:-52500351 None:intergenic
TTATTGATATACTCTTCAGT+AGG 0.573949 1_3:-52491060 None:intergenic
GCAGCACATAGTGTCTCTCC+AGG 0.574981 1_3:-52498197 None:intergenic
ATGTGAACCATCACCTGTCA+TGG 0.576503 1_3:+52492513 Msa0124650:CDS
GTGGTCATATGTCAGGGAAG+AGG 0.576804 1_3:+52491998 Msa0124650:CDS
AATGATGGCGTGGCGAGATG+AGG 0.577897 1_3:-52490727 None:intergenic
TGGCATGCATCCCAACGGTA+AGG 0.577901 1_3:+52500801 Msa0124650:three_prime_UTR
CCATTGCCCAGCCAATTGAT+CGG 0.578065 1_3:-52500659 None:intergenic
ATTCACGGTTCCATATTCAT+GGG 0.579939 1_3:-52499867 None:intergenic
GCTGCAATGGCCATTCAACT+AGG 0.581074 1_3:+52500505 Msa0124650:three_prime_UTR
CCGAAAGTGAAGTTTGTGAA+AGG 0.581461 1_3:+52498290 Msa0124650:three_prime_UTR
CAATAAAACCACCTTACAGT+TGG 0.581904 1_3:+52491077 Msa0124650:CDS
GCAAGCCATCTGCATCTCAA+GGG 0.582594 1_3:+52492220 Msa0124650:CDS
GATCAAAAGTTCTCTCCGGA+AGG 0.582612 1_3:+52500726 Msa0124650:three_prime_UTR
TATGAACAAAAGCTGTGGAA+TGG 0.583308 1_3:+52500583 Msa0124650:three_prime_UTR
CATGCATCCCAACGGTAAGG+TGG 0.585856 1_3:+52500804 Msa0124650:three_prime_UTR
AGAGTAAAGTTTCTGGCAGA+GGG 0.586626 1_3:+52500130 Msa0124650:three_prime_UTR
GTTACCAACTCGGATCGCTA+CGG 0.588342 1_3:-52490652 None:intergenic
ACTCAAATGAATGTGGTGAA+TGG 0.588351 1_3:+52501904 Msa0124650:three_prime_UTR
CGGTCGGACAGCCCAAAACA+TGG 0.589504 1_3:-52497946 None:intergenic
ATGTATCATATGTTTGATCA+GGG 0.589770 1_3:-52500420 None:intergenic
TCCGCATGGGTGGAACCCCA+TGG 0.592731 1_3:+52498230 Msa0124650:three_prime_UTR
TGTTTCAGCTTCCGCATGGG+TGG 0.593550 1_3:+52498220 Msa0124650:three_prime_UTR
GAGGCCTTCACAACTGCTGA+GGG 0.595335 1_3:+52500913 Msa0124650:three_prime_UTR
CGAAACAGATTATACACGGT+GGG 0.595689 1_3:+52498789 Msa0124650:intron
CATGATGATGATAATGATGA+TGG 0.598644 1_3:+52499950 Msa0124650:three_prime_UTR
GATGATGATAATGATGATGG+TGG 0.599702 1_3:+52499953 Msa0124650:three_prime_UTR
TATACCCTCAGCAGTTGTGA+AGG 0.600362 1_3:-52500917 None:intergenic
AAGCATGGTATGTTGAGTGC+TGG 0.600765 1_3:-52494563 None:intergenic
GCTGGTCAGAAGAAGGATAC+GGG 0.601383 1_3:+52500950 Msa0124650:three_prime_UTR
GATTGGGTGCAGAAGAATGA+TGG 0.601410 1_3:-52490742 None:intergenic
ACTTGCAGGAATGGAAGAAG+AGG 0.601561 1_3:+52500894 Msa0124650:three_prime_UTR
CACCTATCTCCTGTTAGAGG+AGG 0.602664 1_3:+52501535 Msa0124650:three_prime_UTR
ATATGGGCAGGTGTGACCTA+CGG 0.602987 1_3:+52500853 Msa0124650:three_prime_UTR
GCGTAACAGCAAAAGGAATG+TGG 0.603596 1_3:+52497974 Msa0124650:three_prime_UTR
CTCTCCTTCCATCTTCACAC+AGG 0.603646 1_3:-52500111 None:intergenic
ATGCAAAAGGAAGTTTCTGA+AGG 0.605176 1_3:+52500549 Msa0124650:three_prime_UTR
ATTTGGGGACACATGATCCA+TGG 0.607898 1_3:+52500194 Msa0124650:three_prime_UTR
CTCCTCTAACAGGAGATAGG+TGG 0.608598 1_3:-52501534 None:intergenic
AACCTTATAGCTATATATGA+CGG 0.608781 1_3:+52495973 Msa0124650:CDS
GTAATTATGTGGTATGAAAG+GGG 0.610838 1_3:-52494741 None:intergenic
GGGTTAGTAACAGTGTGAAG+AGG 0.611676 1_3:-52501679 None:intergenic
TATGCCAAAGGCAGTACTTG+AGG 0.611801 1_3:+52501483 Msa0124650:three_prime_UTR
AGCAGGAAAGCTGATGATCA+GGG 0.612348 1_3:+52494510 Msa0124650:CDS
AGAGGCCTTCACAACTGCTG+AGG 0.613758 1_3:+52500912 Msa0124650:three_prime_UTR
GGTGTGAGTGCTTACTGTGG+TGG 0.615502 1_3:+52500454 Msa0124650:three_prime_UTR
TCCTAGGGGACATAGTCACT+TGG 0.616516 1_3:+52499820 Msa0124650:three_prime_UTR
TCCAAGTGACTATGTCCCCT+AGG 0.619743 1_3:-52499821 None:intergenic
GATTTGGAAAGAATGGTTAG+CGG 0.622055 1_3:+52491006 Msa0124650:CDS
ACGAATGTGGTCATATGTCA+GGG 0.622718 1_3:+52491992 Msa0124650:CDS
CACAGTAAGCACTCACACCA+TGG 0.625608 1_3:-52500450 None:intergenic
GGAAGAGGCTTCTCATGGAA+GGG 0.626324 1_3:+52492013 Msa0124650:CDS
TTCGATTAGGTATACGAATG+TGG 0.629570 1_3:+52491979 Msa0124650:CDS
TGGTTGGCCATGACAGGTGA+TGG 0.630994 1_3:-52492520 None:intergenic
AACACCGAGTCAGCGTGGCG+TGG 0.632482 1_3:-52490691 None:intergenic
AGGATGAGAAGCTACCAGAA+TGG 0.634200 1_3:+52498848 Msa0124650:three_prime_UTR
AATGTGGACTAAAATGGTGA+AGG 0.634442 1_3:+52497990 Msa0124650:three_prime_UTR
GGGCTGTCCCACATGATTTG+GGG 0.634911 1_3:+52500179 Msa0124650:three_prime_UTR
CTGTCCTGTGTGAAGATGGA+AGG 0.636012 1_3:+52500107 Msa0124650:three_prime_UTR
TATGATACATGGACTGTCCA+TGG 0.636500 1_3:+52500433 Msa0124650:three_prime_UTR
CAAGCCATCTGCATCTCAAG+GGG 0.636690 1_3:+52492221 Msa0124650:CDS
TGTATATTTAATTCAATACG+AGG 0.637943 1_3:-52500067 None:intergenic
ATGAGGCCACTGTCAATTTG+GGG 0.638419 1_3:+52501442 Msa0124650:three_prime_UTR
GGAACCCCTTGAGATGCAGA+TGG 0.638569 1_3:-52492225 None:intergenic
CAGTGGCCTCATGTATATGA+GGG 0.643672 1_3:-52501431 None:intergenic
TCATACCCCATCCCTCCAAG+TGG 0.648533 1_3:-52492246 None:intergenic
CTTGTGCAGAATTCTATTGG+TGG 0.648579 1_3:+52495758 Msa0124650:intron
TCATGTGTCCCCAAATCATG+TGG 0.650108 1_3:-52500187 None:intergenic
GTATGCATTAACTATGCCAA+AGG 0.651698 1_3:+52501471 Msa0124650:three_prime_UTR
AAGCTCTTGGAAACAAAGCA+TGG 0.652854 1_3:-52494578 None:intergenic
CATTGTTGCAGCAACACCGT+AGG 0.654279 1_3:-52500869 None:intergenic
ATGATAATGATGATGGTGGA+AGG 0.654300 1_3:+52499957 Msa0124650:three_prime_UTR
CGCTGACTCGGTGTTACAGG+CGG 0.657553 1_3:+52490699 Msa0124650:five_prime_UTR
CAATTCGATAGAGATGCTGA+TGG 0.661858 1_3:+52500376 Msa0124650:three_prime_UTR
ATCGGTCCCTCATATACATG+AGG 0.664121 1_3:+52501425 Msa0124650:three_prime_UTR
AGGAGTGGCAGCATATCAAG+AGG 0.664942 1_3:+52492448 Msa0124650:intron
GATTCGAAACAGATTATACA+CGG 0.665400 1_3:+52498785 Msa0124650:intron
TACAAGTTACAACTGAACCC+CGG 0.668319 1_3:-52501743 None:intergenic
GGGAACTCGTAAGGTTTATG+GGG 0.669077 1_3:+52500159 Msa0124650:three_prime_UTR
TCCATGGGGTTCCACCCATG+CGG 0.669209 1_3:-52498231 None:intergenic
CAGTATATGAACAAAAGCTG+TGG 0.672417 1_3:+52500578 Msa0124650:three_prime_UTR
TTAGAGGTGAATTCAGACAA+TGG 0.673231 1_3:+52492473 Msa0124650:CDS
TATTGAAACTCAAATGAATG+TGG 0.676868 1_3:+52501897 Msa0124650:three_prime_UTR
AATGGTATACAGCATCCTCA+GGG 0.677357 1_3:+52500677 Msa0124650:three_prime_UTR
CATGTGTCCCCAAATCATGT+GGG 0.677655 1_3:-52500186 None:intergenic
CCTGTAACACCGAGTCAGCG+TGG 0.682034 1_3:-52490696 None:intergenic
GATCAGGGTATATCATCATG+GGG 0.682964 1_3:+52494525 Msa0124650:CDS
GAGACTTACAGAGAACTGGT+TGG 0.687892 1_3:-52492536 None:intergenic
GTGACATGAAGCAGTAACAG+TGG 0.688979 1_3:-52493994 None:intergenic
GGTGATGGTTCACATAGACC+AGG 0.689207 1_3:-52492505 None:intergenic
ATAACATACCAACTGTAAGG+TGG 0.689223 1_3:-52491085 None:intergenic
TGCATGCCCCAAATTGACAG+TGG 0.702102 1_3:-52501448 None:intergenic
TGTGAAGAAAGAGATTGTTG+TGG 0.705818 1_3:-52490790 None:intergenic
ATTGTTAACATGTAAGCACG+TGG 0.707750 1_3:+52501639 Msa0124650:three_prime_UTR
GTGAATGGCATGCATCCCAA+CGG 0.707804 1_3:+52500796 Msa0124650:three_prime_UTR
CATGGTGTGAGTGCTTACTG+TGG 0.707900 1_3:+52500451 Msa0124650:three_prime_UTR
CTTGTGATATAGAAGTACGC+CGG 0.716435 1_3:-52495940 None:intergenic
AATGTGATGAAAGTTAAAGG+CGG 0.717612 1_3:+52500760 Msa0124650:three_prime_UTR
TTTCTGGCAGAGGGAAACTG+GGG 0.722226 1_3:+52500139 Msa0124650:three_prime_UTR
GGTGCAGAAGAATGATGGCG+TGG 0.728152 1_3:-52490737 None:intergenic
TCGAAACAGATTATACACGG+TGG 0.737907 1_3:+52498788 Msa0124650:intron
TATGATTCTACTGCTCCTAG+GGG 0.747175 1_3:+52499806 Msa0124650:three_prime_UTR
ATACTGGTTTCAGACTCCAG+AGG 0.761858 1_3:+52501381 Msa0124650:three_prime_UTR
AGTTTGATGAGTTACCAACT+CGG 0.762021 1_3:-52490662 None:intergenic
AAGGTGTGGAATATGTCATG+TGG 0.762463 1_3:+52499993 Msa0124650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCAGATATTTATAAT+TGG + chr1_3:52495708-52495727 Msa0124650:intron 10.0%
!! AATTAAAATTTATATTCTTC+AGG + chr1_3:52498651-52498670 Msa0124650:intron 10.0%
!! CTTAAAATAATAAATTAACT+GGG - chr1_3:52498947-52498966 None:intergenic 10.0%
!! TCTTAAAATAATAAATTAAC+TGG - chr1_3:52498948-52498967 None:intergenic 10.0%
!!! TTTTAAGAAATATCTTTTAA+TGG + chr1_3:52499320-52499339 Msa0124650:intron 10.0%
!!! ATTAACTACTAATATTTTCA+GGG - chr1_3:52490599-52490618 None:intergenic 15.0%
!!! AATTAACTACTAATATTTTC+AGG - chr1_3:52490600-52490619 None:intergenic 15.0%
!!! AATTCAAAAGTACAAAAAAA+TGG - chr1_3:52491905-52491924 None:intergenic 15.0%
!!! AAGAGTTTATTAATTTGTAT+TGG + chr1_3:52492106-52492125 Msa0124650:intron 15.0%
!!! ATTAATTGGAAGTTTTAAAT+TGG - chr1_3:52492278-52492297 None:intergenic 15.0%
!! AAATTATAATAAGACAATCA+AGG - chr1_3:52492664-52492683 None:intergenic 15.0%
!! TTTAAATAATTATAGTTCAG+AGG - chr1_3:52492877-52492896 None:intergenic 15.0%
!!! TTAATCAGTTTTAATTCAAT+TGG + chr1_3:52493163-52493182 Msa0124650:intron 15.0%
!! TTGTAATTACCTATAAAATT+TGG + chr1_3:52493855-52493874 Msa0124650:intron 15.0%
!!! TTTTCATTACCAAATTTTAT+AGG - chr1_3:52493867-52493886 None:intergenic 15.0%
!!! ATCTAGTTTTTATCATTTAA+TGG - chr1_3:52494385-52494404 None:intergenic 15.0%
!! ATTAAATGATAAAAACTAGA+TGG + chr1_3:52494384-52494403 Msa0124650:intron 15.0%
!!! ATATTATTTTATACAAAGTG+CGG + chr1_3:52494901-52494920 Msa0124650:intron 15.0%
!! AAAAAAGGAATTAAAATGTT+AGG - chr1_3:52495888-52495907 None:intergenic 15.0%
!!! CTTTTCATACTAAAAAAAAT+TGG - chr1_3:52498083-52498102 None:intergenic 15.0%
!! ATTGAAATTCTTGTATATTA+AGG + chr1_3:52498121-52498140 Msa0124650:intron 15.0%
!!! TATTTAAGATTTCTTTTTAC+AGG + chr1_3:52499454-52499473 Msa0124650:intron 15.0%
!! CCAAATAATTGAAATTTATT+GGG - chr1_3:52501201-52501220 None:intergenic 15.0%
!! ACCAAATAATTGAAATTTAT+TGG - chr1_3:52501202-52501221 None:intergenic 15.0%
!! TGCAAATTTATTATTTAACA+CGG + chr1_3:52501222-52501241 Msa0124650:intron 15.0%
!!! ATGATTTTTATTCAAATGAT+TGG + chr1_3:52501247-52501266 Msa0124650:intron 15.0%
!!! ATGAATTTAGAATATATCTT+GGG - chr1_3:52501857-52501876 None:intergenic 15.0%
!! AATTCAATGATTTAGTTGAT+CGG + chr1_3:52491136-52491155 Msa0124650:intron 20.0%
!!! AATTCAATTTTCAAATCACA+AGG - chr1_3:52491235-52491254 None:intergenic 20.0%
!! TGTGATTTGAAAATTGAATT+TGG + chr1_3:52491235-52491254 Msa0124650:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+TGG + chr1_3:52491391-52491410 Msa0124650:intron 20.0%
!!! TCTAAATTCTTTAAGAAGAT+TGG - chr1_3:52491741-52491760 None:intergenic 20.0%
!!! AGAATTTAGAGTAACTTTTA+TGG + chr1_3:52491751-52491770 Msa0124650:CDS 20.0%
!!! GATTTACTAGTTTGATATAT+CGG + chr1_3:52491836-52491855 Msa0124650:intron 20.0%
!! TAATTAATAAGCATATGCAA+AGG - chr1_3:52491865-52491884 None:intergenic 20.0%
!! TAAAACATTAACCATTTGAA+TGG - chr1_3:52492325-52492344 None:intergenic 20.0%
!! TTTACAAATACATTTATCCT+TGG + chr1_3:52492348-52492367 Msa0124650:intron 20.0%
!!! TACAAATGAGTATTTTATTC+TGG + chr1_3:52492969-52492988 Msa0124650:intron 20.0%
!!! GTTTTAATTCAATTGGATTT+CGG + chr1_3:52493170-52493189 Msa0124650:intron 20.0%
!! ATCAAGACAAAATTATCTAT+GGG + chr1_3:52493363-52493382 Msa0124650:intron 20.0%
!! AAATAATCCTCATAAATAGA+AGG - chr1_3:52493397-52493416 None:intergenic 20.0%
!!! TGATACTTATTTACTGTTTT+TGG + chr1_3:52493489-52493508 Msa0124650:intron 20.0%
!!! TTTTTGTAATAAGTGAAAAC+AGG - chr1_3:52493717-52493736 None:intergenic 20.0%
!! ATATTAAATGAAGATATTGC+AGG - chr1_3:52493929-52493948 None:intergenic 20.0%
!!! ACTACTTGAACTTTTTATTT+TGG - chr1_3:52494165-52494184 None:intergenic 20.0%
!! AATAAAAAGTTCAAGTAGTA+AGG + chr1_3:52494166-52494185 Msa0124650:intron 20.0%
!! ATAAAAAGTTCAAGTAGTAA+GGG + chr1_3:52494167-52494186 Msa0124650:intron 20.0%
!!! TGGATATAATTTTACGTAAA+TGG - chr1_3:52494365-52494384 None:intergenic 20.0%
!!! TGTTATTTAAATTCATCTGT+CGG + chr1_3:52494824-52494843 Msa0124650:intron 20.0%
!! TTTCCTTTACATGAAAAATT+GGG + chr1_3:52495055-52495074 Msa0124650:intron 20.0%
!! GTAATGAATTCTATAAAACA+TGG - chr1_3:52495277-52495296 None:intergenic 20.0%
!!! ATATTTGTTTCTTTTGTAGT+TGG + chr1_3:52495601-52495620 Msa0124650:intron 20.0%
!! CTGTGAATGAAAAATAAAAA+AGG - chr1_3:52495903-52495922 None:intergenic 20.0%
!!! TTGAAATTCCTATTTTTGAT+GGG + chr1_3:52496663-52496682 Msa0124650:intron 20.0%
!! TATTTCAAGCTAAAAACATA+TGG - chr1_3:52496902-52496921 None:intergenic 20.0%
!!! ATATGTTTTTAGCTTGAAAT+AGG + chr1_3:52496901-52496920 Msa0124650:intron 20.0%
!! TGTATAATGAGATATCTATT+CGG + chr1_3:52497328-52497347 Msa0124650:intron 20.0%
!! TCTTTATCAACTTAATAAGT+TGG - chr1_3:52497396-52497415 None:intergenic 20.0%
!! CTAATAGAAATGTTAATTCT+AGG - chr1_3:52497549-52497568 None:intergenic 20.0%
!! CTAGAATTAACATTTCTATT+AGG + chr1_3:52497547-52497566 Msa0124650:intron 20.0%
!! ATGAAAACAAACATACAATT+TGG + chr1_3:52497632-52497651 Msa0124650:intron 20.0%
!!! AAATAGTTTGTTTTGACTTT+GGG + chr1_3:52497655-52497674 Msa0124650:intron 20.0%
!!! GTAATCTTTCTAAAGAATTA+AGG + chr1_3:52497704-52497723 Msa0124650:intron 20.0%
!!! AGTATGTACATATTTGAAAT+TGG + chr1_3:52497774-52497793 Msa0124650:intron 20.0%
!! TCATACTAAAAAAAATTGGA+AGG - chr1_3:52498079-52498098 None:intergenic 20.0%
!! AAATTCTTGTATATTAAGGA+TGG + chr1_3:52498125-52498144 Msa0124650:intron 20.0%
!! AATTCTTGTATATTAAGGAT+GGG + chr1_3:52498126-52498145 Msa0124650:intron 20.0%
!!! AAAATTTTAGCACATAACAA+TGG - chr1_3:52498335-52498354 None:intergenic 20.0%
!!! ATTGTTATGTGCTAAAATTT+TGG + chr1_3:52498334-52498353 Msa0124650:intron 20.0%
!!! TTGTTATGTGCTAAAATTTT+GGG + chr1_3:52498335-52498354 Msa0124650:intron 20.0%
!! TTTAACTACTATATCTAAAG+TGG + chr1_3:52498438-52498457 Msa0124650:intron 20.0%
!!! AGGAGATATACAAAATTTTA+TGG + chr1_3:52498565-52498584 Msa0124650:intron 20.0%
!!! GGAGATATACAAAATTTTAT+GGG + chr1_3:52498566-52498585 Msa0124650:intron 20.0%
!!! TTTTTAAATGCTACAGATAA+AGG - chr1_3:52498751-52498770 None:intergenic 20.0%
!! TGAATATAATGAAATCTGTA+TGG - chr1_3:52499114-52499133 None:intergenic 20.0%
!!! AATGTTTGTTTTATCATATC+AGG + chr1_3:52499584-52499603 Msa0124650:intron 20.0%
!!! TGATTTTCAAAAGACTAAAT+TGG - chr1_3:52499619-52499638 None:intergenic 20.0%
!! TGTATATTTAATTCAATACG+AGG - chr1_3:52500070-52500089 None:intergenic 20.0%
!! CCCAATAAATTTCAATTATT+TGG + chr1_3:52501198-52501217 Msa0124650:intron 20.0%
!! AATTAATTTCTTGATAGAGA+AGG - chr1_3:52501345-52501364 None:intergenic 20.0%
!!! GATGAATTTAGAATATATCT+TGG - chr1_3:52501858-52501877 None:intergenic 20.0%
!! CATGAATTAATTATTTCAGA+AGG + chr1_3:52501934-52501953 Msa0124650:three_prime_UTR 20.0%
! ATCTTCAAAAAAACAGAATC+TGG - chr1_3:52490906-52490925 None:intergenic 25.0%
!! TTGAACAATATCTAGGTTTT+CGG + chr1_3:52490928-52490947 Msa0124650:five_prime_UTR 25.0%
! TGTTATTGTTATGAGAGATT+TGG + chr1_3:52490990-52491009 Msa0124650:exon 25.0%
! TTATTGATATACTCTTCAGT+AGG - chr1_3:52491063-52491082 None:intergenic 25.0%
! TTCAATGGTAATTACCTAAT+AGG - chr1_3:52491295-52491314 None:intergenic 25.0%
! AAGTAACTAACAAAAGAGAA+GGG + chr1_3:52491482-52491501 Msa0124650:intron 25.0%
! ACTATTTGCTCGAAAATAAA+AGG + chr1_3:52491575-52491594 Msa0124650:intron 25.0%
! ATCAATATCAAACTGCAAAA+AGG - chr1_3:52491669-52491688 None:intergenic 25.0%
!! TTTTATGGAAGCTATAAAGA+TGG + chr1_3:52491766-52491785 Msa0124650:CDS 25.0%
! GAAATTGAAATTGAAATTCC+AGG + chr1_3:52491956-52491975 Msa0124650:intron 25.0%
! TCTAAAAATTAGACAGACAA+TGG + chr1_3:52493102-52493121 Msa0124650:intron 25.0%
! TTGTTATGGAAAAGGAAATA+TGG + chr1_3:52493133-52493152 Msa0124650:intron 25.0%
! GATCAAGACAAAATTATCTA+TGG + chr1_3:52493362-52493381 Msa0124650:intron 25.0%
!! CTATTTTCCTTCTATTTATG+AGG + chr1_3:52493387-52493406 Msa0124650:intron 25.0%
!!! ATGAGGATTATTTTATAAGC+TGG + chr1_3:52493404-52493423 Msa0124650:intron 25.0%
!!! TGAGGATTATTTTATAAGCT+GGG + chr1_3:52493405-52493424 Msa0124650:intron 25.0%
!!! TGTTTTTGGTCATTTATAAC+TGG + chr1_3:52493503-52493522 Msa0124650:intron 25.0%
!! AGGGTAAGAAAGAATAATTT+TGG + chr1_3:52493637-52493656 Msa0124650:intron 25.0%
!!! TGTTTCTTGTTGTTAAAGAT+TGG + chr1_3:52493756-52493775 Msa0124650:intron 25.0%
! GTGCATATATATTCAAGTAT+AGG + chr1_3:52493805-52493824 Msa0124650:intron 25.0%
! TATTCAAGTATAGGAAAACA+AGG + chr1_3:52493814-52493833 Msa0124650:intron 25.0%
! AACATTTATTTGAACCAAAC+AGG + chr1_3:52493893-52493912 Msa0124650:intron 25.0%
! AATTTCACTAACTATATGCA+AGG - chr1_3:52493956-52493975 None:intergenic 25.0%
! TAAAAAGTTCAAGTAGTAAG+GGG + chr1_3:52494168-52494187 Msa0124650:intron 25.0%
! TTGTCATTCTTTAATTCTGT+TGG + chr1_3:52494222-52494241 Msa0124650:intron 25.0%
!! GTTTCTAGATACATGAAAAA+TGG - chr1_3:52494446-52494465 None:intergenic 25.0%
! TGTATCTAGAAACTTATACA+TGG + chr1_3:52494453-52494472 Msa0124650:intron 25.0%
!!! ATTTTTGTTTCAGAATTAGC+AGG + chr1_3:52494493-52494512 Msa0124650:intron 25.0%
!!! GACATGATATTTTTAGTTCT+GGG - chr1_3:52494712-52494731 None:intergenic 25.0%
! CAGAACTAAAAATATCATGT+CGG + chr1_3:52494711-52494730 Msa0124650:CDS 25.0%
! TGTAATTATGTGGTATGAAA+GGG - chr1_3:52494745-52494764 None:intergenic 25.0%
!! AATATCCTCTTTTATTGAAC+TGG + chr1_3:52495008-52495027 Msa0124650:intron 25.0%
!! CAATTTTTCATGTAAAGGAA+AGG - chr1_3:52495056-52495075 None:intergenic 25.0%
! CTTTCCTTTACATGAAAAAT+TGG + chr1_3:52495054-52495073 Msa0124650:intron 25.0%
! CTTGCTCATTTATTAAATTG+AGG + chr1_3:52495180-52495199 Msa0124650:intron 25.0%
! ATAAAAGACATAACCATAGA+GGG - chr1_3:52495246-52495265 None:intergenic 25.0%
! AATAAAAGACATAACCATAG+AGG - chr1_3:52495247-52495266 None:intergenic 25.0%
! AATCACCATACATATATCAA+GGG - chr1_3:52495340-52495359 None:intergenic 25.0%
! TCTTTATTGTTTGTCATTGT+TGG + chr1_3:52495373-52495392 Msa0124650:intron 25.0%
! ATTACGAACCTAATTGAAAA+AGG - chr1_3:52495461-52495480 None:intergenic 25.0%
! TCAGATATTTATAATTGGCA+CGG + chr1_3:52495713-52495732 Msa0124650:intron 25.0%
! AACCTTATAGCTATATATGA+CGG + chr1_3:52495973-52495992 Msa0124650:CDS 25.0%
!!! TTCTAGTTTATATCAAGTTC+AGG - chr1_3:52496105-52496124 None:intergenic 25.0%
! GTTTGTAAAAGGTTATGATA+TGG + chr1_3:52496273-52496292 Msa0124650:intron 25.0%
! ACTGTGTAATTAGTTACTAA+AGG + chr1_3:52496384-52496403 Msa0124650:intron 25.0%
! CTGTGTAATTAGTTACTAAA+GGG + chr1_3:52496385-52496404 Msa0124650:intron 25.0%
! TGTGTAATTAGTTACTAAAG+GGG + chr1_3:52496386-52496405 Msa0124650:intron 25.0%
!! TTTAGGTTACAAAAACTGTT+GGG + chr1_3:52496500-52496519 Msa0124650:intron 25.0%
!!! CTTGAAATTCCTATTTTTGA+TGG + chr1_3:52496662-52496681 Msa0124650:intron 25.0%
!!! TGAAATTCCTATTTTTGATG+GGG + chr1_3:52496664-52496683 Msa0124650:intron 25.0%
! AAAAGATGTATTCGATTGTA+GGG + chr1_3:52496716-52496735 Msa0124650:intron 25.0%
! ATCTTATCATAATTGAATCC+CGG - chr1_3:52496826-52496845 None:intergenic 25.0%
! TCTGAAAGGAATATTATGAA+TGG + chr1_3:52497002-52497021 Msa0124650:intron 25.0%
! CTGAAAGGAATATTATGAAT+GGG + chr1_3:52497003-52497022 Msa0124650:intron 25.0%
! TAATGTTGTAAATAGATACC+TGG + chr1_3:52497031-52497050 Msa0124650:intron 25.0%
! AATATATCCCTTATAACCAT+GGG - chr1_3:52497103-52497122 None:intergenic 25.0%
! TAATATATCCCTTATAACCA+TGG - chr1_3:52497104-52497123 None:intergenic 25.0%
! GATATCTCATTATACACTTA+TGG - chr1_3:52497324-52497343 None:intergenic 25.0%
! GTATAATGAGATATCTATTC+GGG + chr1_3:52497329-52497348 Msa0124650:intron 25.0%
!! ATTAGAAAAGAGAGTACAAA+GGG - chr1_3:52497447-52497466 None:intergenic 25.0%
!! TATTAGAAAAGAGAGTACAA+AGG - chr1_3:52497448-52497467 None:intergenic 25.0%
! AGTGTTGTCAATTATTTGAA+TGG - chr1_3:52497505-52497524 None:intergenic 25.0%
! CAATCTTGTTAAAATAGCAT+TGG + chr1_3:52497575-52497594 Msa0124650:intron 25.0%
!!! TGTTTGTTTTCATCTATTTC+AGG - chr1_3:52497625-52497644 None:intergenic 25.0%
!!! GAAATAGTTTGTTTTGACTT+TGG + chr1_3:52497654-52497673 Msa0124650:intron 25.0%
!!! TTTTGGTGGATATATTCTTA+AGG + chr1_3:52497831-52497850 Msa0124650:intron 25.0%
! TTAAGGTCATTGAATATTTC+AGG + chr1_3:52497848-52497867 Msa0124650:intron 25.0%
!! TCTGCATGTAATTTAAAATG+TGG + chr1_3:52498415-52498434 Msa0124650:intron 25.0%
! TAAACTAAGAATTACCATTC+TGG - chr1_3:52498865-52498884 None:intergenic 25.0%
! GTGTAACATACAAAAAAAAC+TGG - chr1_3:52498912-52498931 None:intergenic 25.0%
!! TTTTTGTATGTTACACTTAC+AGG + chr1_3:52498916-52498935 Msa0124650:intron 25.0%
! AATTACCTATCTTTACAAAC+AGG - chr1_3:52499218-52499237 None:intergenic 25.0%
! AAAAATGAGAAATAATAGCC+AGG + chr1_3:52499685-52499704 Msa0124650:three_prime_UTR 25.0%
! ATGTATCATATGTTTGATCA+GGG - chr1_3:52500423-52500442 None:intergenic 25.0%
!!! TCTTATTTTAACTATGACAG+TGG + chr1_3:52500607-52500626 Msa0124650:three_prime_UTR 25.0%
! TTGAAATCATCAAAAAGAGA+GGG - chr1_3:52500706-52500725 None:intergenic 25.0%
! TTCAATGTGATGAAAGTTAA+AGG + chr1_3:52500757-52500776 Msa0124650:three_prime_UTR 25.0%
! ATTGACAAAATCATTAGTGT+AGG - chr1_3:52501088-52501107 None:intergenic 25.0%
!! TGTCCATGAAGTTAATTTTA+GGG - chr1_3:52501510-52501529 None:intergenic 25.0%
! TAGAATATATCTTGGGATTT+GGG - chr1_3:52501850-52501869 None:intergenic 25.0%
! TTAGAATATATCTTGGGATT+TGG - chr1_3:52501851-52501870 None:intergenic 25.0%
! TATTGAAACTCAAATGAATG+TGG + chr1_3:52501897-52501916 Msa0124650:three_prime_UTR 25.0%
TTATGAAAATCGCGAGATAT+TGG - chr1_3:52490767-52490786 None:intergenic 30.0%
AAGATCGTTGAACAATATCT+AGG + chr1_3:52490921-52490940 Msa0124650:five_prime_UTR 30.0%
TATGAGAGATTTGGAAAGAA+TGG + chr1_3:52490999-52491018 Msa0124650:exon 30.0%
TTCATTGTAGAAAGAATTCG+TGG + chr1_3:52491037-52491056 Msa0124650:CDS 30.0%
AACATAACATACCAACTGTA+AGG - chr1_3:52491091-52491110 None:intergenic 30.0%
GAATATATTAGCCACCTATT+AGG + chr1_3:52491278-52491297 Msa0124650:intron 30.0%
AATGGTAATTACCTAATAGG+TGG - chr1_3:52491292-52491311 None:intergenic 30.0%
!! CATTCAAGTTGTTCATTCAA+TGG - chr1_3:52491310-52491329 None:intergenic 30.0%
! TCTTCAAATGTGTTTTTCCT+CGG - chr1_3:52491427-52491446 None:intergenic 30.0%
ACTAACTTAAGACACATTTG+AGG + chr1_3:52491455-52491474 Msa0124650:intron 30.0%
GAAGTAACTAACAAAAGAGA+AGG + chr1_3:52491481-52491500 Msa0124650:intron 30.0%
TGGAACAATTTAAATGTGTG+AGG - chr1_3:52491551-52491570 None:intergenic 30.0%
!! TTTTCGAGCAAATAGTCATT+TGG - chr1_3:52491571-52491590 None:intergenic 30.0%
! ATTCTTTAAGAAGATTGGCA+TGG - chr1_3:52491736-52491755 None:intergenic 30.0%
GATAACAAGTTACAATAACG+CGG + chr1_3:52491814-52491833 Msa0124650:intron 30.0%
! AGAAATTGATGACCAATGAA+TGG - chr1_3:52492057-52492076 None:intergenic 30.0%
GATTGAAGATTTCAGTTTGT+TGG + chr1_3:52492149-52492168 Msa0124650:intron 30.0%
! AAGATACGTTCTAAACACAT+TGG - chr1_3:52492689-52492708 None:intergenic 30.0%
GAATCAGATAAATGCATGTT+AGG + chr1_3:52492762-52492781 Msa0124650:intron 30.0%
!! ACTTTTTCCTTACCTTCTTT+AGG - chr1_3:52492836-52492855 None:intergenic 30.0%
TTAAATCCCAACCTAAACAA+AGG + chr1_3:52492892-52492911 Msa0124650:intron 30.0%
TAAACAAAGGTTCTGTTGTT+GGG + chr1_3:52492905-52492924 Msa0124650:intron 30.0%
AATTAGAATTGCAAGGTTCT+TGG - chr1_3:52493011-52493030 None:intergenic 30.0%
ATACGCTAATTAGAATTGCA+AGG - chr1_3:52493018-52493037 None:intergenic 30.0%
! TCTGAAATTCATTGTGTAAG+AGG + chr1_3:52493049-52493068 Msa0124650:intron 30.0%
CTGAAATTCATTGTGTAAGA+GGG + chr1_3:52493050-52493069 Msa0124650:intron 30.0%
! GATTTGTTCCAAACAATGAT+GGG - chr1_3:52493084-52493103 None:intergenic 30.0%
! AGATTTGTTCCAAACAATGA+TGG - chr1_3:52493085-52493104 None:intergenic 30.0%
TAATTCAATTGGATTTCGGT+TGG + chr1_3:52493174-52493193 Msa0124650:intron 30.0%
! TCACTATTGATGTTTCTACT+TGG + chr1_3:52493218-52493237 Msa0124650:intron 30.0%
!! GAGGATTATTTTATAAGCTG+GGG + chr1_3:52493406-52493425 Msa0124650:intron 30.0%
!! AGGATTATTTTATAAGCTGG+GGG + chr1_3:52493407-52493426 Msa0124650:intron 30.0%
! TTTTGTAGAGGTAAAACCTA+TGG + chr1_3:52493444-52493463 Msa0124650:intron 30.0%
CAGTAAATAAGTATCATTCC+AGG - chr1_3:52493485-52493504 None:intergenic 30.0%
! CAGATTTTTGTAAGTAGAGA+GGG + chr1_3:52493563-52493582 Msa0124650:intron 30.0%
! CAAAAGTTTTGCATCAGTTT+TGG + chr1_3:52493592-52493611 Msa0124650:CDS 30.0%
TTTGGATAACAGTCTTTCTA+AGG + chr1_3:52493655-52493674 Msa0124650:intron 30.0%
CTTTAACAACAAGAAACAGA+GGG - chr1_3:52493754-52493773 None:intergenic 30.0%
TCTTTAACAACAAGAAACAG+AGG - chr1_3:52493755-52493774 None:intergenic 30.0%
ATCAATTATTATGCACTCTC+CGG - chr1_3:52494093-52494112 None:intergenic 30.0%
TCATTCTTTAATTCTGTTGG+AGG + chr1_3:52494225-52494244 Msa0124650:intron 30.0%
AATATACCTTGCATATTTGG+TGG + chr1_3:52494302-52494321 Msa0124650:intron 30.0%
ATATACCTTGCATATTTGGT+GGG + chr1_3:52494303-52494322 Msa0124650:intron 30.0%
AGATACATGAAAAATGGTCA+TGG - chr1_3:52494440-52494459 None:intergenic 30.0%
!!! CGACATGATATTTTTAGTTC+TGG - chr1_3:52494713-52494732 None:intergenic 30.0%
GTAATTATGTGGTATGAAAG+GGG - chr1_3:52494744-52494763 None:intergenic 30.0%
CTGTAATTATGTGGTATGAA+AGG - chr1_3:52494746-52494765 None:intergenic 30.0%
TAAATTCATCTGTCGGAAAA+TGG + chr1_3:52494831-52494850 Msa0124650:intron 30.0%
TCTAAATTGAAAACCATGAC+TGG + chr1_3:52494946-52494965 Msa0124650:intron 30.0%
! CAACCCAATTTTTCATGTAA+AGG - chr1_3:52495061-52495080 None:intergenic 30.0%
CTTTACATGAAAAATTGGGT+TGG + chr1_3:52495059-52495078 Msa0124650:intron 30.0%
TAATAAATGAGCAAGAGAGA+AGG - chr1_3:52495175-52495194 None:intergenic 30.0%
! TACATTTTTACATACCCCTT+TGG + chr1_3:52495208-52495227 Msa0124650:intron 30.0%
TCTTTCCCTTGATATATGTA+TGG + chr1_3:52495332-52495351 Msa0124650:intron 30.0%
CAATCACCATACATATATCA+AGG - chr1_3:52495341-52495360 None:intergenic 30.0%
AACCTAATTGAAAAAGGCTT+TGG - chr1_3:52495455-52495474 None:intergenic 30.0%
ACATACTGAAACTCTTAACA+TGG - chr1_3:52495539-52495558 None:intergenic 30.0%
!! AAGTCAGCCTTTTATTTACT+TGG + chr1_3:52495648-52495667 Msa0124650:CDS 30.0%
!! AGTCAGCCTTTTATTTACTT+GGG + chr1_3:52495649-52495668 Msa0124650:CDS 30.0%
! GAAGAAAAAGTGTACATGAA+AGG - chr1_3:52495818-52495837 None:intergenic 30.0%
AACCGTCATATATAGCTATA+AGG - chr1_3:52495978-52495997 None:intergenic 30.0%
TTATAGCTATATATGACGGT+TGG + chr1_3:52495977-52495996 Msa0124650:intron 30.0%
! TTAACAACTCAATGAGTTGA+AGG + chr1_3:52496036-52496055 Msa0124650:intron 30.0%
!! GAAGGTTCTGAAATTTCTAA+AGG + chr1_3:52496054-52496073 Msa0124650:intron 30.0%
! GAAAAGCAGGCAAAATATTT+TGG + chr1_3:52496201-52496220 Msa0124650:intron 30.0%
! TTCAAAATGAGTTGTCGTTT+AGG + chr1_3:52496235-52496254 Msa0124650:intron 30.0%
GTTATGATATGGTGTTCTTA+AGG + chr1_3:52496284-52496303 Msa0124650:intron 30.0%
!!! ATGTAGTCACTTTTAACAAG+CGG - chr1_3:52496347-52496366 None:intergenic 30.0%
! AAGGGGTAGTTTTTGTAAAT+AGG + chr1_3:52496403-52496422 Msa0124650:intron 30.0%
! GTTTAGGTTACAAAAACTGT+TGG + chr1_3:52496499-52496518 Msa0124650:intron 30.0%
CAAAAGATGTATTCGATTGT+AGG + chr1_3:52496715-52496734 Msa0124650:intron 30.0%
AAAGATGTATTCGATTGTAG+GGG + chr1_3:52496717-52496736 Msa0124650:intron 30.0%
! TACCTTCAATTTTTCTCCTT+CGG - chr1_3:52496747-52496766 None:intergenic 30.0%
AAGCTAAAAACATATGGATG+GGG - chr1_3:52496896-52496915 None:intergenic 30.0%
CAAGCTAAAAACATATGGAT+GGG - chr1_3:52496897-52496916 None:intergenic 30.0%
TCAAGCTAAAAACATATGGA+TGG - chr1_3:52496898-52496917 None:intergenic 30.0%
!!! GTTTTTAGCTTGAAATAGGA+CGG + chr1_3:52496905-52496924 Msa0124650:intron 30.0%
!!! TTTTTAGCTTGAAATAGGAC+GGG + chr1_3:52496906-52496925 Msa0124650:intron 30.0%
ATATATCCCTTATAACCATG+GGG - chr1_3:52497102-52497121 None:intergenic 30.0%
GAATATTTCATAGCACTACT+GGG - chr1_3:52497130-52497149 None:intergenic 30.0%
TGAATATTTCATAGCACTAC+TGG - chr1_3:52497131-52497150 None:intergenic 30.0%
!!! TAATCCTCTTTTTGAAGCTA+TGG + chr1_3:52497468-52497487 Msa0124650:intron 30.0%
!! TTGACTTTGGGTTATCTTTT+TGG + chr1_3:52497667-52497686 Msa0124650:intron 30.0%
!!! TTGGGTTATCTTTTTGGTTA+AGG + chr1_3:52497673-52497692 Msa0124650:intron 30.0%
AATAAAATGAGCACTATCGA+AGG - chr1_3:52497735-52497754 None:intergenic 30.0%
! TGCTCTTTAGATGATGATTT+TGG + chr1_3:52497814-52497833 Msa0124650:intron 30.0%
! TCTTTAGATGATGATTTTGG+TGG + chr1_3:52497817-52497836 Msa0124650:intron 30.0%
CAATAGAAAAAGTAACAGGA+GGG - chr1_3:52497888-52497907 None:intergenic 30.0%
! TTTCTGTTTTGCCATGTTTT+GGG + chr1_3:52497935-52497954 Msa0124650:three_prime_UTR 30.0%
! AAAAGGAATGTGGACTAAAA+TGG + chr1_3:52497984-52498003 Msa0124650:three_prime_UTR 30.0%
AAAAAATTGGAAGGAGATGA+TGG - chr1_3:52498070-52498089 None:intergenic 30.0%
! GTATGAAAAGTATACAGTGT+TGG + chr1_3:52498093-52498112 Msa0124650:intron 30.0%
! TTATGTGCTAAAATTTTGGG+TGG + chr1_3:52498338-52498357 Msa0124650:intron 30.0%
AGATATAGAAAAGTCGTTCA+GGG - chr1_3:52498375-52498394 None:intergenic 30.0%
AAGATATAGAAAAGTCGTTC+AGG - chr1_3:52498376-52498395 None:intergenic 30.0%
AAGGAGAAAACAAACATCAT+CGG - chr1_3:52498494-52498513 None:intergenic 30.0%
AGAGCGGAAAGAAAAAAAAA+AGG - chr1_3:52498513-52498532 None:intergenic 30.0%
!! ACGAATTTGATTTGATAGAG+CGG - chr1_3:52498529-52498548 None:intergenic 30.0%
! TCGTTCAATTCTTTTCTTGT+AGG + chr1_3:52498545-52498564 Msa0124650:intron 30.0%
GATTCGAAACAGATTATACA+CGG + chr1_3:52498785-52498804 Msa0124650:intron 30.0%
TAAACGGTAGAAACATTTGT+TGG - chr1_3:52499165-52499184 None:intergenic 30.0%
AGCATGCATACTCATATAAA+CGG - chr1_3:52499181-52499200 None:intergenic 30.0%
! CTTTTCCTGTTTGTAAAGAT+AGG + chr1_3:52499210-52499229 Msa0124650:intron 30.0%
!! AGTTAGTTTGTGAAATGCAA+TGG - chr1_3:52499301-52499320 None:intergenic 30.0%
CTATTTAGTCCTTCTTACAT+TGG + chr1_3:52499401-52499420 Msa0124650:intron 30.0%
! CATGATGATGATAATGATGA+TGG + chr1_3:52499950-52499969 Msa0124650:three_prime_UTR 30.0%
ACATTCATGATACTAGTAAG+TGG + chr1_3:52500236-52500255 Msa0124650:three_prime_UTR 30.0%
! ACACCTGAAGTACAAATTTT+GGG - chr1_3:52500273-52500292 None:intergenic 30.0%
! TACACCTGAAGTACAAATTT+TGG - chr1_3:52500274-52500293 None:intergenic 30.0%
CATGTATCATATGTTTGATC+AGG - chr1_3:52500424-52500443 None:intergenic 30.0%
CTGATCAAACATATGATACA+TGG + chr1_3:52500422-52500441 Msa0124650:three_prime_UTR 30.0%
CTTGAAATCATCAAAAAGAG+AGG - chr1_3:52500707-52500726 None:intergenic 30.0%
CATTGAAATCAAAAACCTTC+CGG - chr1_3:52500744-52500763 None:intergenic 30.0%
AATGTGATGAAAGTTAAAGG+CGG + chr1_3:52500760-52500779 Msa0124650:three_prime_UTR 30.0%
CAAGAAAGAAAGAAAAATGC+AGG - chr1_3:52501019-52501038 None:intergenic 30.0%
! GTCCATGAAGTTAATTTTAG+GGG - chr1_3:52501509-52501528 None:intergenic 30.0%
! CTGTCCATGAAGTTAATTTT+AGG - chr1_3:52501511-52501530 None:intergenic 30.0%
AGTTTGATGAGTTACCAACT+CGG - chr1_3:52490665-52490684 None:intergenic 35.0%
AAATCGCGAGATATTGGATT+GGG - chr1_3:52490761-52490780 None:intergenic 35.0%
AAAATCGCGAGATATTGGAT+TGG - chr1_3:52490762-52490781 None:intergenic 35.0%
TGTGAAGAAAGAGATTGTTG+TGG - chr1_3:52490793-52490812 None:intergenic 35.0%
GATTTGGAAAGAATGGTTAG+CGG + chr1_3:52491006-52491025 Msa0124650:CDS 35.0%
CAATAAAACCACCTTACAGT+TGG + chr1_3:52491077-52491096 Msa0124650:CDS 35.0%
ATAACATACCAACTGTAAGG+TGG - chr1_3:52491088-52491107 None:intergenic 35.0%
! GGATTGTTGAATTTTCTTCG+AGG + chr1_3:52491256-52491275 Msa0124650:intron 35.0%
ATGAACAACTTGAATGTGTG+AGG + chr1_3:52491314-52491333 Msa0124650:intron 35.0%
! CTGAGCATGTGTTTGAAATT+TGG - chr1_3:52491367-52491386 None:intergenic 35.0%
CAAATTTCAAACACATGCTC+AGG + chr1_3:52491365-52491384 Msa0124650:intron 35.0%
! TTTATGGACTAAATTGACCG+AGG + chr1_3:52491407-52491426 Msa0124650:intron 35.0%
TTGAAATTCCAGGTTCGATT+AGG + chr1_3:52491966-52491985 Msa0124650:intron 35.0%
TTCGATTAGGTATACGAATG+TGG + chr1_3:52491979-52491998 Msa0124650:CDS 35.0%
TCAGATTCTCTTCCATTCAT+TGG + chr1_3:52492042-52492061 Msa0124650:intron 35.0%
CTTCCAATTAATCACTTGAC+TGG + chr1_3:52492286-52492305 Msa0124650:intron 35.0%
TGACCAGTCAAGTGATTAAT+TGG - chr1_3:52492292-52492311 None:intergenic 35.0%
TAACCATTTGAATGGTATGC+AGG - chr1_3:52492317-52492336 None:intergenic 35.0%
GAAAATTGCTACAAAAGCCA+AGG - chr1_3:52492368-52492387 None:intergenic 35.0%
! TGGCTTTTGTAGCAATTTTC+CGG + chr1_3:52492368-52492387 Msa0124650:intron 35.0%
!! AAGAAAAGGCTTACTTTTCC+CGG - chr1_3:52492390-52492409 None:intergenic 35.0%
CCAGTACAAGAAGAAAGAAA+AGG - chr1_3:52492404-52492423 None:intergenic 35.0%
! CCTTTTCTTTCTTCTTGTAC+TGG + chr1_3:52492401-52492420 Msa0124650:intron 35.0%
AGCATATCAAGAGGATTTAG+AGG + chr1_3:52492457-52492476 Msa0124650:CDS 35.0%
TTAGAGGTGAATTCAGACAA+TGG + chr1_3:52492473-52492492 Msa0124650:CDS 35.0%
AAATGAGACTTACAGAGAAC+TGG - chr1_3:52492543-52492562 None:intergenic 35.0%
! AGATTAGTTGCTATCTACAG+AGG - chr1_3:52492799-52492818 None:intergenic 35.0%
ACCTTCTTTAGGTAGCTTAT+GGG - chr1_3:52492825-52492844 None:intergenic 35.0%
TACCTTCTTTAGGTAGCTTA+TGG - chr1_3:52492826-52492845 None:intergenic 35.0%
TAAGCTACCTAAAGAAGGTA+AGG + chr1_3:52492826-52492845 Msa0124650:intron 35.0%
! ACAGAACCTTTGTTTAGGTT+GGG - chr1_3:52492901-52492920 None:intergenic 35.0%
! AACAGAACCTTTGTTTAGGT+TGG - chr1_3:52492902-52492921 None:intergenic 35.0%
! CAACAACAGAACCTTTGTTT+AGG - chr1_3:52492906-52492925 None:intergenic 35.0%
CTAAACAAAGGTTCTGTTGT+TGG + chr1_3:52492904-52492923 Msa0124650:intron 35.0%
ATATTAGAGTCAGCAAATGC+TGG + chr1_3:52492938-52492957 Msa0124650:intron 35.0%
TATTAGAGTCAGCAAATGCT+GGG + chr1_3:52492939-52492958 Msa0124650:intron 35.0%
TTACAGATCCCATCATTGTT+TGG + chr1_3:52493073-52493092 Msa0124650:intron 35.0%
! AGTCAGTGTTGTTATGGAAA+AGG + chr1_3:52493125-52493144 Msa0124650:intron 35.0%
AAGTATCATTCCAGGTTACA+GGG - chr1_3:52493477-52493496 None:intergenic 35.0%
TAAGTATCATTCCAGGTTAC+AGG - chr1_3:52493478-52493497 None:intergenic 35.0%
! GCAGATTTTTGTAAGTAGAG+AGG + chr1_3:52493562-52493581 Msa0124650:intron 35.0%
! ATTTTTGTAAGTAGAGAGGG+AGG + chr1_3:52493566-52493585 Msa0124650:CDS 35.0%
!! CAGTCTTTCTAAGGACTTTT+TGG + chr1_3:52493664-52493683 Msa0124650:intron 35.0%
TCAAGTATAGGAAAACAAGG+CGG + chr1_3:52493817-52493836 Msa0124650:intron 35.0%
CATGTCACTGCAAGTAAATT+AGG + chr1_3:52494009-52494028 Msa0124650:intron 35.0%
GTAAATTAGGTGATGATCAG+TGG + chr1_3:52494022-52494041 Msa0124650:intron 35.0%
TTCTGGTGAAAGGATAATCT+TGG + chr1_3:52494057-52494076 Msa0124650:intron 35.0%
TCTGGTGAAAGGATAATCTT+GGG + chr1_3:52494058-52494077 Msa0124650:intron 35.0%
TCAATTATTATGCACTCTCC+GGG - chr1_3:52494092-52494111 None:intergenic 35.0%
! TGGAGGATATGATCATTTTG+TGG + chr1_3:52494242-52494261 Msa0124650:intron 35.0%
ATATTCCCTCAAAGAAGACA+CGG - chr1_3:52494287-52494306 None:intergenic 35.0%
GGGAATATACCTTGCATATT+TGG + chr1_3:52494299-52494318 Msa0124650:intron 35.0%
ATGATCAGGGTATATCATCA+TGG + chr1_3:52494523-52494542 Msa0124650:CDS 35.0%
TGATCAGGGTATATCATCAT+GGG + chr1_3:52494524-52494543 Msa0124650:CDS 35.0%
CTATCACACAGGTATGTATA+AGG - chr1_3:52494662-52494681 None:intergenic 35.0%
ATATGGAACTTCTATCACAC+AGG - chr1_3:52494673-52494692 None:intergenic 35.0%
GATAGAAGTTCCATATTCGT+AGG + chr1_3:52494677-52494696 Msa0124650:intron 35.0%
!!! GATATTTTTAGTTCTGGGTC+TGG - chr1_3:52494707-52494726 None:intergenic 35.0%
CTGCTTTCTCTGTAATTATG+TGG - chr1_3:52494755-52494774 None:intergenic 35.0%
ACACACCGTATAGACAAAAA+CGG - chr1_3:52494789-52494808 None:intergenic 35.0%
TAAAGAGAAACATCCAGTCA+TGG - chr1_3:52494962-52494981 None:intergenic 35.0%
AGTTGCCAGTTCAATAAAAG+AGG - chr1_3:52495016-52495035 None:intergenic 35.0%
TTGCGCAATATCATCTCAAA+AGG - chr1_3:52495151-52495170 None:intergenic 35.0%
! CATTACAACAGCAATTTTGC+TGG + chr1_3:52495291-52495310 Msa0124650:intron 35.0%
! CTAATTGAAAAAGGCTTTGG+TGG - chr1_3:52495452-52495471 None:intergenic 35.0%
!!! CACCAAAGCCTTTTTCAATT+AGG + chr1_3:52495450-52495469 Msa0124650:intron 35.0%
TGTGTAAATGCCTACCTATA+CGG + chr1_3:52495494-52495513 Msa0124650:intron 35.0%
GATGAATTTACCGTATAGGT+AGG - chr1_3:52495507-52495526 None:intergenic 35.0%
GAAACTCTTAACATGGAATG+TGG - chr1_3:52495532-52495551 None:intergenic 35.0%
!!! CTTTTGTAGTTGGTAAACAC+TGG + chr1_3:52495611-52495630 Msa0124650:intron 35.0%
TTACCGCCCAAGTAAATAAA+AGG - chr1_3:52495658-52495677 None:intergenic 35.0%
GATCTTGTGCAGAATTCTAT+TGG + chr1_3:52495755-52495774 Msa0124650:intron 35.0%
TTGTGCAGAATTCTATTGGT+GGG + chr1_3:52495759-52495778 Msa0124650:intron 35.0%
GTTTGCAGATTTCTCTTTGT+AGG + chr1_3:52495999-52496018 Msa0124650:intron 35.0%
! TTTTCTGATCTCAGGATCAT+TGG - chr1_3:52496186-52496205 None:intergenic 35.0%
!! AGTTTTGCGTGGTTTGTAAA+AGG + chr1_3:52496262-52496281 Msa0124650:intron 35.0%
! TGGTGTTCTTAAGGTTTGTT+TGG + chr1_3:52496293-52496312 Msa0124650:intron 35.0%
ACAACACTAGACATTGAGAT+TGG + chr1_3:52496476-52496495 Msa0124650:intron 35.0%
CAACACTAGACATTGAGATT+GGG + chr1_3:52496477-52496496 Msa0124650:intron 35.0%
TAGACATTGAGATTGGGTTT+AGG + chr1_3:52496483-52496502 Msa0124650:intron 35.0%
TGACCATGCTTCATTTATTC+AGG - chr1_3:52496548-52496567 None:intergenic 35.0%
ATGTCATCCCCATCAAAAAT+AGG - chr1_3:52496674-52496693 None:intergenic 35.0%
AAGATGTATTCGATTGTAGG+GGG + chr1_3:52496718-52496737 Msa0124650:intron 35.0%
! ACCTTCAATTTTTCTCCTTC+GGG - chr1_3:52496746-52496765 None:intergenic 35.0%
AGCTAAAAACATATGGATGG+GGG - chr1_3:52496895-52496914 None:intergenic 35.0%
CGGATCTGAGAAGATTTAAA+CGG - chr1_3:52496959-52496978 None:intergenic 35.0%
! CTCTAGTTTGTAATCTTGAG+CGG - chr1_3:52496979-52496998 None:intergenic 35.0%
ACAAACTAGAGCTATCTGAA+AGG + chr1_3:52496988-52497007 Msa0124650:intron 35.0%
TGTTGTAAATAGATACCTGG+AGG + chr1_3:52497034-52497053 Msa0124650:intron 35.0%
TATATCCCTTATAACCATGG+GGG - chr1_3:52497101-52497120 None:intergenic 35.0%
CTAAAGAGCAATTTGAAGAC+AGG - chr1_3:52497804-52497823 None:intergenic 35.0%
GCAATAGAAAAAGTAACAGG+AGG - chr1_3:52497889-52497908 None:intergenic 35.0%
GCAGCAATAGAAAAAGTAAC+AGG - chr1_3:52497892-52497911 None:intergenic 35.0%
! GTTTCTGTTTTGCCATGTTT+TGG + chr1_3:52497934-52497953 Msa0124650:three_prime_UTR 35.0%
! AATGTGGACTAAAATGGTGA+AGG + chr1_3:52497990-52498009 Msa0124650:three_prime_UTR 35.0%
!! ACTGGTTACTTGTGTTTTTG+TGG + chr1_3:52498014-52498033 Msa0124650:intron 35.0%
TTAAGGATGGGCAATTTGAT+CGG + chr1_3:52498138-52498157 Msa0124650:intron 35.0%
! TGCAACAGTACATTTTCCAT+GGG - chr1_3:52498249-52498268 None:intergenic 35.0%
! ATGCAACAGTACATTTTCCA+TGG - chr1_3:52498250-52498269 None:intergenic 35.0%
CCTTTCACAAACTTCACTTT+CGG - chr1_3:52498293-52498312 None:intergenic 35.0%
ATTTATATTCTTCAGGCCTG+TGG + chr1_3:52498658-52498677 Msa0124650:intron 35.0%
AGTAATGAACAAACAACCAC+AGG - chr1_3:52498677-52498696 None:intergenic 35.0%
AGCTTCTCATCCTTAAGAAT+AGG - chr1_3:52498841-52498860 None:intergenic 35.0%
CAACAAAAGCCAATGTAAGA+AGG - chr1_3:52499413-52499432 None:intergenic 35.0%
!!! CTTCTTACATTGGCTTTTGT+TGG + chr1_3:52499411-52499430 Msa0124650:intron 35.0%
!!! TACATTGGCTTTTGTTGGTT+AGG + chr1_3:52499416-52499435 Msa0124650:intron 35.0%
! CCACTTTAGCTTCAGTTATT+CGG - chr1_3:52499742-52499761 None:intergenic 35.0%
AGAGATACATCCCATGAATA+TGG + chr1_3:52499857-52499876 Msa0124650:three_prime_UTR 35.0%
ATTCACGGTTCCATATTCAT+GGG - chr1_3:52499870-52499889 None:intergenic 35.0%
TATTCACGGTTCCATATTCA+TGG - chr1_3:52499871-52499890 None:intergenic 35.0%
!! GATGATGATAATGATGATGG+TGG + chr1_3:52499953-52499972 Msa0124650:three_prime_UTR 35.0%
!! ATGATAATGATGATGGTGGA+AGG + chr1_3:52499957-52499976 Msa0124650:three_prime_UTR 35.0%
TAAGCATTCATTTCATGCCA+TGG - chr1_3:52500214-52500233 None:intergenic 35.0%
!!! GAAGTACAAATTTTGGGTTC+AGG - chr1_3:52500267-52500286 None:intergenic 35.0%
GAACCCAAAATTTGTACTTC+AGG + chr1_3:52500267-52500286 Msa0124650:three_prime_UTR 35.0%
! TATCGAGATTTTTCTGCAAC+AGG + chr1_3:52500292-52500311 Msa0124650:three_prime_UTR 35.0%
!! GATGGTCTTATTGAGAATGA+TGG + chr1_3:52500394-52500413 Msa0124650:three_prime_UTR 35.0%
! ATTTTGCGGAAACATGCAAA+AGG + chr1_3:52500536-52500555 Msa0124650:three_prime_UTR 35.0%
ATGCAAAAGGAAGTTTCTGA+AGG + chr1_3:52500549-52500568 Msa0124650:three_prime_UTR 35.0%
! CACAGCTTTTGTTCATATAC+TGG - chr1_3:52500580-52500599 None:intergenic 35.0%
CAGTATATGAACAAAAGCTG+TGG + chr1_3:52500578-52500597 Msa0124650:three_prime_UTR 35.0%
TATGAACAAAAGCTGTGGAA+TGG + chr1_3:52500583-52500602 Msa0124650:three_prime_UTR 35.0%
TCAAGATCAAAAGTTCTCTC+CGG + chr1_3:52500722-52500741 Msa0124650:three_prime_UTR 35.0%
AACAATGATACTTGCAGGAA+TGG + chr1_3:52500885-52500904 Msa0124650:three_prime_UTR 35.0%
GAAACACAAACAATCACTGA+TGG - chr1_3:52500995-52501014 None:intergenic 35.0%
TTTCTTTCTTGTGCATGTGT+AGG + chr1_3:52501028-52501047 Msa0124650:intron 35.0%
! GTTGACTTTGAGAAACAGAT+GGG - chr1_3:52501162-52501181 None:intergenic 35.0%
CTGAAACCAGTATCTGTTAT+GGG - chr1_3:52501374-52501393 None:intergenic 35.0%
! TCTGAAACCAGTATCTGTTA+TGG - chr1_3:52501375-52501394 None:intergenic 35.0%
GTATGCATTAACTATGCCAA+AGG + chr1_3:52501471-52501490 Msa0124650:three_prime_UTR 35.0%
TTATGTAATCCTCCTCTAAC+AGG - chr1_3:52501547-52501566 None:intergenic 35.0%
GGAGGATTACATAAAGAAAC+AGG + chr1_3:52501553-52501572 Msa0124650:three_prime_UTR 35.0%
ATTGTTAACATGTAAGCACG+TGG + chr1_3:52501639-52501658 Msa0124650:three_prime_UTR 35.0%
! AGCACGTGGAAATTTTGTAT+AGG + chr1_3:52501653-52501672 Msa0124650:three_prime_UTR 35.0%
CGTAGAGAAGCTGTTAAAAA+TGG + chr1_3:52501710-52501729 Msa0124650:three_prime_UTR 35.0%
AGAGAAGCTGTTAAAAATGG+TGG + chr1_3:52501713-52501732 Msa0124650:three_prime_UTR 35.0%
CTGTTAAAAATGGTGGTCAA+GGG + chr1_3:52501720-52501739 Msa0124650:three_prime_UTR 35.0%
ACTCAAATGAATGTGGTGAA+TGG + chr1_3:52501904-52501923 Msa0124650:three_prime_UTR 35.0%
GGAATTTGCAATCTGTGTTG+TGG + chr1_3:52490962-52490981 Msa0124650:five_prime_UTR 40.0%
TTGGATACATTCAGACACCA+CGG - chr1_3:52491348-52491367 None:intergenic 40.0%
!! TTGCAATTTTGATACCTCCG+TGG + chr1_3:52491510-52491529 Msa0124650:intron 40.0%
TTCGTATACCTAATCGAACC+TGG - chr1_3:52491977-52491996 None:intergenic 40.0%
TACGAATGTGGTCATATGTC+AGG + chr1_3:52491991-52492010 Msa0124650:CDS 40.0%
ACGAATGTGGTCATATGTCA+GGG + chr1_3:52491992-52492011 Msa0124650:CDS 40.0%
AGGTGCTTTCTGCATAATTC+AGG - chr1_3:52492175-52492194 None:intergenic 40.0%
TCTCGAGTGAAAGGATCTAT+AGG - chr1_3:52492195-52492214 None:intergenic 40.0%
TTGCAACTTTCTCGAGTGAA+AGG - chr1_3:52492204-52492223 None:intergenic 40.0%
ACTCCTGCATACCATTCAAA+TGG + chr1_3:52492311-52492330 Msa0124650:intron 40.0%
! GGCTTTTGTAGCAATTTTCC+GGG + chr1_3:52492369-52492388 Msa0124650:intron 40.0%
ATGTGATTATCTACCTACGC+AGG + chr1_3:52492428-52492447 Msa0124650:intron 40.0%
AGACAATGGCAAATCATTCC+TGG + chr1_3:52492487-52492506 Msa0124650:CDS 40.0%
! CAATGGAGTCAGTGTTGTTA+TGG + chr1_3:52493119-52493138 Msa0124650:intron 40.0%
! GCACTTCTGTTTCTCTTCTT+TGG - chr1_3:52493268-52493287 None:intergenic 40.0%
! TTTTATAAGCTGGGGGAATG+AGG + chr1_3:52493414-52493433 Msa0124650:intron 40.0%
TTTATAAGCTGGGGGAATGA+GGG + chr1_3:52493415-52493434 Msa0124650:intron 40.0%
! TGAGGGTTCTCTTTTTGTAG+AGG + chr1_3:52493432-52493451 Msa0124650:intron 40.0%
GTTACAGGGGAATAAACCAT+AGG - chr1_3:52493463-52493482 None:intergenic 40.0%
AGTATCATTCCAGGTTACAG+GGG - chr1_3:52493476-52493495 None:intergenic 40.0%
GCAGTAACAGTGGCATAAAA+TGG - chr1_3:52493987-52494006 None:intergenic 40.0%
! ATTGTGCTCTTTCTGGTGAA+AGG + chr1_3:52494047-52494066 Msa0124650:intron 40.0%
TAATCTTGGGACTTCTTACC+CGG + chr1_3:52494071-52494090 Msa0124650:intron 40.0%
TTTATCCGTGAGAAGTAGCT+TGG + chr1_3:52494132-52494151 Msa0124650:intron 40.0%
TAGAACCAAGCTACTTCTCA+CGG - chr1_3:52494140-52494159 None:intergenic 40.0%
TTTACCCGTGTCTTCTTTGA+GGG + chr1_3:52494279-52494298 Msa0124650:intron 40.0%
TATTCCCTCAAAGAAGACAC+GGG - chr1_3:52494286-52494305 None:intergenic 40.0%
GATCAGGGTATATCATCATG+GGG + chr1_3:52494525-52494544 Msa0124650:CDS 40.0%
TCATGGGGATGGAATCTAAA+TGG + chr1_3:52494540-52494559 Msa0124650:CDS 40.0%
AAGCTCTTGGAAACAAAGCA+TGG - chr1_3:52494581-52494600 None:intergenic 40.0%
!! ATGCTTTGTTTCCAAGAGCT+TGG + chr1_3:52494580-52494599 Msa0124650:CDS 40.0%
TCATAAACAGTCCAAGCTCT+TGG - chr1_3:52494594-52494613 None:intergenic 40.0%
AGAGCTTGGACTGTTTATGA+TGG + chr1_3:52494594-52494613 Msa0124650:CDS 40.0%
!!! TGCTGCCGTTTTTGTCTATA+CGG + chr1_3:52494781-52494800 Msa0124650:CDS 40.0%
TCATCTGTCGGAAAATGGAA+TGG + chr1_3:52494836-52494855 Msa0124650:intron 40.0%
!! GAAAAATTGGGTTGGATGCA+TGG + chr1_3:52495067-52495086 Msa0124650:intron 40.0%
!!! CAGCAATTTTGCTGGTTCAT+AGG + chr1_3:52495299-52495318 Msa0124650:intron 40.0%
! ATTGAAAAAGGCTTTGGTGG+TGG - chr1_3:52495449-52495468 None:intergenic 40.0%
ACTCTTAACATGGAATGTGG+CGG - chr1_3:52495529-52495548 None:intergenic 40.0%
!! CAGCCTTTTATTTACTTGGG+CGG + chr1_3:52495652-52495671 Msa0124650:CDS 40.0%
CTTGTGCAGAATTCTATTGG+TGG + chr1_3:52495758-52495777 Msa0124650:intron 40.0%
TTCATTCACAGAGCTGAAGA+TGG + chr1_3:52495912-52495931 Msa0124650:intron 40.0%
! CTTGTGATATAGAAGTACGC+CGG - chr1_3:52495943-52495962 None:intergenic 40.0%
!! GTTTAGGATCAAGTTTTGCG+TGG + chr1_3:52496251-52496270 Msa0124650:intron 40.0%
CAGCCTGAATAAATGAAGCA+TGG + chr1_3:52496542-52496561 Msa0124650:intron 40.0%
TTTGATGGGGATGACATGAT+AGG + chr1_3:52496677-52496696 Msa0124650:intron 40.0%
TTGATGGGGATGACATGATA+GGG + chr1_3:52496678-52496697 Msa0124650:intron 40.0%
TCCCGAAGGAGAAAAATTGA+AGG + chr1_3:52496742-52496761 Msa0124650:intron 40.0%
AGGCTTTACCACGGTAAAAA+TGG + chr1_3:52496787-52496806 Msa0124650:intron 40.0%
!! GACTTTCACCATTTTTACCG+TGG - chr1_3:52496798-52496817 None:intergenic 40.0%
AAATGGTGAAAGTCTTGCAC+CGG + chr1_3:52496804-52496823 Msa0124650:intron 40.0%
ATCATCTGCATCGCTTTACA+TGG + chr1_3:52497057-52497076 Msa0124650:intron 40.0%
TCATCTGCATCGCTTTACAT+GGG + chr1_3:52497058-52497077 Msa0124650:intron 40.0%
ATATCCCTTATAACCATGGG+GGG - chr1_3:52497100-52497119 None:intergenic 40.0%
CACTCCATAGCTTCAAAAAG+AGG - chr1_3:52497475-52497494 None:intergenic 40.0%
! CATTGGAGAAAGTGTAACTG+AGG + chr1_3:52497592-52497611 Msa0124650:intron 40.0%
AAAATGAGCACTATCGAAGG+AGG - chr1_3:52497732-52497751 None:intergenic 40.0%
!!! CTTTTGCTGTTACGCTACTT+CGG - chr1_3:52497969-52497988 None:intergenic 40.0%
! GACTAAAATGGTGAAGGTAC+TGG + chr1_3:52497996-52498015 Msa0124650:intron 40.0%
TAAGGATGGGCAATTTGATC+GGG + chr1_3:52498139-52498158 Msa0124650:intron 40.0%
GATCGGGAAAATTTCTCTTC+TGG + chr1_3:52498155-52498174 Msa0124650:three_prime_UTR 40.0%
! GCAACAGTACATTTTCCATG+GGG - chr1_3:52498248-52498267 None:intergenic 40.0%
!! CTGTTGCATTTAGTCTTGCA+TGG + chr1_3:52498261-52498280 Msa0124650:three_prime_UTR 40.0%
CCGAAAGTGAAGTTTGTGAA+AGG + chr1_3:52498290-52498309 Msa0124650:three_prime_UTR 40.0%
AAAGTGGCTCAGATTGCATT+TGG + chr1_3:52498454-52498473 Msa0124650:intron 40.0%
TCGAAACAGATTATACACGG+TGG + chr1_3:52498788-52498807 Msa0124650:intron 40.0%
CGAAACAGATTATACACGGT+GGG + chr1_3:52498789-52498808 Msa0124650:intron 40.0%
GGGAAGAAGAGATTGCAAAA+TGG + chr1_3:52498809-52498828 Msa0124650:three_prime_UTR 40.0%
AGAAGAGATTGCAAAATGGC+AGG + chr1_3:52498813-52498832 Msa0124650:three_prime_UTR 40.0%
ATGGCAGGATCCTATTCTTA+AGG + chr1_3:52498828-52498847 Msa0124650:three_prime_UTR 40.0%
GAACTCTACTTTCTTGTTGC+TGG + chr1_3:52499498-52499517 Msa0124650:three_prime_UTR 40.0%
TTGTTGCTGGAGGAACAATT+TGG + chr1_3:52499511-52499530 Msa0124650:three_prime_UTR 40.0%
GAAGATAGCAAAGTAGAGTC+TGG - chr1_3:52499665-52499684 None:intergenic 40.0%
CCGAATAACTGAAGCTAAAG+TGG + chr1_3:52499739-52499758 Msa0124650:three_prime_UTR 40.0%
CTATGATTCTACTGCTCCTA+GGG + chr1_3:52499805-52499824 Msa0124650:three_prime_UTR 40.0%
TATGATTCTACTGCTCCTAG+GGG + chr1_3:52499806-52499825 Msa0124650:three_prime_UTR 40.0%
ACCGTGAATACTCTCAGAAA+CGG + chr1_3:52499881-52499900 Msa0124650:three_prime_UTR 40.0%
!! TCCGTTTCTGAGAGTATTCA+CGG - chr1_3:52499885-52499904 None:intergenic 40.0%
AAGGTGTGGAATATGTCATG+TGG + chr1_3:52499993-52500012 Msa0124650:three_prime_UTR 40.0%
TGGAAGGAGAGTAAAGTTTC+TGG + chr1_3:52500123-52500142 Msa0124650:three_prime_UTR 40.0%
!! AGAGTAAAGTTTCTGGCAGA+GGG + chr1_3:52500130-52500149 Msa0124650:three_prime_UTR 40.0%
! GCAACAGGTGATTTGCAATT+TGG + chr1_3:52500307-52500326 Msa0124650:three_prime_UTR 40.0%
CAATTCGATAGAGATGCTGA+TGG + chr1_3:52500376-52500395 Msa0124650:three_prime_UTR 40.0%
! TATGATACATGGACTGTCCA+TGG + chr1_3:52500433-52500452 Msa0124650:three_prime_UTR 40.0%
ATCTCTGTCACCTAGTTGAA+TGG - chr1_3:52500518-52500537 None:intergenic 40.0%
! ACTAGGTGACAGAGATTTTG+CGG + chr1_3:52500522-52500541 Msa0124650:three_prime_UTR 40.0%
ATCCATTCAAGCCGATCAAT+TGG + chr1_3:52500648-52500667 Msa0124650:three_prime_UTR 40.0%
AATGGTATACAGCATCCTCA+GGG + chr1_3:52500677-52500696 Msa0124650:three_prime_UTR 40.0%
AAAGTTAAAGGCGGCAGAAT+GGG + chr1_3:52500769-52500788 Msa0124650:three_prime_UTR 40.0%
TATGCAGTCTCGAGAGATAT+GGG + chr1_3:52500837-52500856 Msa0124650:three_prime_UTR 40.0%
ACAAACAATCACTGATGGCA+GGG - chr1_3:52500990-52501009 None:intergenic 40.0%
TTTCTTGTGCATGTGTAGGA+GGG + chr1_3:52501032-52501051 Msa0124650:intron 40.0%
!! CGTTGACTTTGAGAAACAGA+TGG - chr1_3:52501163-52501182 None:intergenic 40.0%
CTTTCTCCCATAACAGATAC+TGG + chr1_3:52501365-52501384 Msa0124650:intron 40.0%
!! CCAGAGGCATTTACAATTGA+CGG + chr1_3:52501397-52501416 Msa0124650:three_prime_UTR 40.0%
!! CAGAGGCATTTACAATTGAC+GGG + chr1_3:52501398-52501417 Msa0124650:three_prime_UTR 40.0%
! TTACAATTGACGGGCACTAT+CGG + chr1_3:52501407-52501426 Msa0124650:three_prime_UTR 40.0%
GGCCCCTAAAATTAACTTCA+TGG + chr1_3:52501504-52501523 Msa0124650:three_prime_UTR 40.0%
GCTGTTAAAAATGGTGGTCA+AGG + chr1_3:52501719-52501738 Msa0124650:three_prime_UTR 40.0%
TACAAGTTACAACTGAACCC+CGG - chr1_3:52501746-52501765 None:intergenic 40.0%
GATTGGGTGCAGAAGAATGA+TGG - chr1_3:52490745-52490764 None:intergenic 45.0%
! TCTAGGTTTTCGGTTGATCG+AGG + chr1_3:52490938-52490957 Msa0124650:five_prime_UTR 45.0%
! CTTCTTCTCCAAGCTTGTTC+AGG - chr1_3:52491704-52491723 None:intergenic 45.0%
ATTATCTACCTACGCAGGAG+TGG + chr1_3:52492433-52492452 Msa0124650:intron 45.0%
ATGTGAACCATCACCTGTCA+TGG + chr1_3:52492513-52492532 Msa0124650:CDS 45.0%
GAGACTTACAGAGAACTGGT+TGG - chr1_3:52492539-52492558 None:intergenic 45.0%
GCCCATAAGCTACCTAAAGA+AGG + chr1_3:52492821-52492840 Msa0124650:intron 45.0%
TGGTTTATTCCCCTGTAACC+TGG + chr1_3:52493464-52493483 Msa0124650:intron 45.0%
!!! TTTGCATCAGTTTTGGCTCC+CGG + chr1_3:52493599-52493618 Msa0124650:CDS 45.0%
CAGGAATGTTAGAGCCTGTT+TGG - chr1_3:52493910-52493929 None:intergenic 45.0%
GTGACATGAAGCAGTAACAG+TGG - chr1_3:52493997-52494016 None:intergenic 45.0%
AGTGGCAATTGTGCTCTTTC+TGG + chr1_3:52494040-52494059 Msa0124650:intron 45.0%
CTTTACCCGTGTCTTCTTTG+AGG + chr1_3:52494278-52494297 Msa0124650:intron 45.0%
GAACTCCCACCAAATATGCA+AGG - chr1_3:52494311-52494330 None:intergenic 45.0%
! CATATTTGGTGGGAGTTCGA+GGG + chr1_3:52494313-52494332 Msa0124650:intron 45.0%
! ATATTTGGTGGGAGTTCGAG+GGG + chr1_3:52494314-52494333 Msa0124650:intron 45.0%
GCAAGCAGAACTCAGATTAC+TGG - chr1_3:52494418-52494437 None:intergenic 45.0%
TAGCAGGAAAGCTGATGATC+AGG + chr1_3:52494509-52494528 Msa0124650:CDS 45.0%
AGCAGGAAAGCTGATGATCA+GGG + chr1_3:52494510-52494529 Msa0124650:CDS 45.0%
AGGGTATATCATCATGGGGA+TGG + chr1_3:52494529-52494548 Msa0124650:CDS 45.0%
AAGCATGGTATGTTGAGTGC+TGG - chr1_3:52494566-52494585 None:intergenic 45.0%
GTATAGACAAAAACGGCAGC+AGG - chr1_3:52494782-52494801 None:intergenic 45.0%
! TAGTAGAAGCTGTGCTACTC+TGG - chr1_3:52494987-52495006 None:intergenic 45.0%
CATAACCATAGAGGGAGCTT+TGG - chr1_3:52495238-52495257 None:intergenic 45.0%
GGCGGATGAATTTACCGTAT+AGG - chr1_3:52495511-52495530 None:intergenic 45.0%
ACTAGAAAGATGCCTTTCCC+TGG + chr1_3:52496118-52496137 Msa0124650:intron 45.0%
ATCCAAAGTAGTCCAGGGAA+AGG - chr1_3:52496133-52496152 None:intergenic 45.0%
CGCAAATCCAAAGTAGTCCA+GGG - chr1_3:52496138-52496157 None:intergenic 45.0%
TCGCAAATCCAAAGTAGTCC+AGG - chr1_3:52496139-52496158 None:intergenic 45.0%
GATCCTGAGATCAGAAAAGC+AGG + chr1_3:52496188-52496207 Msa0124650:intron 45.0%
!! TTGCCTGCTTTTCTGATCTC+AGG - chr1_3:52496194-52496213 None:intergenic 45.0%
! TTTGTTTGGTCCGCGCTTTT+AGG + chr1_3:52496307-52496326 Msa0124650:intron 45.0%
ACCACTTCCTTCATACACTG+GGG - chr1_3:52496582-52496601 None:intergenic 45.0%
CACCACTTCCTTCATACACT+GGG - chr1_3:52496583-52496602 None:intergenic 45.0%
ACACCACTTCCTTCATACAC+TGG - chr1_3:52496584-52496603 None:intergenic 45.0%
AGACTAGAATGACCGTGACT+CGG + chr1_3:52496638-52496657 Msa0124650:intron 45.0%
GGAATTTCAAGACCGAGTCA+CGG - chr1_3:52496653-52496672 None:intergenic 45.0%
GATGACATGATAGGGTGGAT+TGG + chr1_3:52496686-52496705 Msa0124650:intron 45.0%
!! CATGATAGGGTGGATTGGAA+TGG + chr1_3:52496691-52496710 Msa0124650:intron 45.0%
AGGTAGCCCTGATAGAATTG+AGG + chr1_3:52496762-52496781 Msa0124650:intron 45.0%
GGTAGCCCTGATAGAATTGA+GGG + chr1_3:52496763-52496782 Msa0124650:intron 45.0%
GCCTACCCTCAATTCTATCA+GGG - chr1_3:52496771-52496790 None:intergenic 45.0%
AGCCTACCCTCAATTCTATC+AGG - chr1_3:52496772-52496791 None:intergenic 45.0%
ATTGAGGGTAGGCTTTACCA+CGG + chr1_3:52496778-52496797 Msa0124650:intron 45.0%
AATGGTGAAAGTCTTGCACC+GGG + chr1_3:52496805-52496824 Msa0124650:intron 45.0%
!! GATTCAAGAGCACCATGTTC+AGG + chr1_3:52496843-52496862 Msa0124650:intron 45.0%
TCACTGGAATCTCCTGAACA+TGG - chr1_3:52496858-52496877 None:intergenic 45.0%
GGTTTCGAATCAACGTTCAC+TGG - chr1_3:52496874-52496893 None:intergenic 45.0%
ATTGCCCCCCATGGTTATAA+GGG + chr1_3:52497093-52497112 Msa0124650:intron 45.0%
CAGCACACAACGCACATATT+TGG - chr1_3:52497234-52497253 None:intergenic 45.0%
CGAAGTAGCGTAACAGCAAA+AGG + chr1_3:52497967-52497986 Msa0124650:three_prime_UTR 45.0%
GCGTAACAGCAAAAGGAATG+TGG + chr1_3:52497974-52497993 Msa0124650:three_prime_UTR 45.0%
TGAAAGGCAGCACTTTCAAC+AGG + chr1_3:52498306-52498325 Msa0124650:three_prime_UTR 45.0%
CAGATTGCATTTGGTCTCTG+AGG + chr1_3:52498463-52498482 Msa0124650:intron 45.0%
AGGATGAGAAGCTACCAGAA+TGG + chr1_3:52498848-52498867 Msa0124650:three_prime_UTR 45.0%
CTCTACTTTCTTGTTGCTGG+AGG + chr1_3:52499501-52499520 Msa0124650:three_prime_UTR 45.0%
GCTGGAGGAACAATTTGGAT+AGG + chr1_3:52499516-52499535 Msa0124650:three_prime_UTR 45.0%
!! CTGACTCTTTTAGCTGATCC+TGG - chr1_3:52499706-52499725 None:intergenic 45.0%
CCTAGGAGCAGTAGAATCAT+AGG - chr1_3:52499807-52499826 None:intergenic 45.0%
CCTATGATTCTACTGCTCCT+AGG + chr1_3:52499804-52499823 Msa0124650:three_prime_UTR 45.0%
TGGTGGAAGGTTCTTGTACT+TGG + chr1_3:52499970-52499989 Msa0124650:three_prime_UTR 45.0%
GGAAGGTTCTTGTACTTGGA+AGG + chr1_3:52499974-52499993 Msa0124650:three_prime_UTR 45.0%
GTTCTTGTACTTGGAAGGTG+TGG + chr1_3:52499979-52499998 Msa0124650:three_prime_UTR 45.0%
!! GAGAGTAAAGTTTCTGGCAG+AGG + chr1_3:52500129-52500148 Msa0124650:three_prime_UTR 45.0%
TGGGGAACTCGTAAGGTTTA+TGG + chr1_3:52500157-52500176 Msa0124650:three_prime_UTR 45.0%
GGGGAACTCGTAAGGTTTAT+GGG + chr1_3:52500158-52500177 Msa0124650:three_prime_UTR 45.0%
GGGAACTCGTAAGGTTTATG+GGG + chr1_3:52500159-52500178 Msa0124650:three_prime_UTR 45.0%
CATGTGTCCCCAAATCATGT+GGG - chr1_3:52500189-52500208 None:intergenic 45.0%
TCATGTGTCCCCAAATCATG+TGG - chr1_3:52500190-52500209 None:intergenic 45.0%
ATTTGGGGACACATGATCCA+TGG + chr1_3:52500194-52500213 Msa0124650:three_prime_UTR 45.0%
!! TGCAATTTGGTGTCGATGTG+TGG + chr1_3:52500320-52500339 Msa0124650:three_prime_UTR 45.0%
!! AGCCAATTGATCGGCTTGAA+TGG - chr1_3:52500653-52500672 None:intergenic 45.0%
ATTCAAGCCGATCAATTGGC+TGG + chr1_3:52500652-52500671 Msa0124650:three_prime_UTR 45.0%
TTCAAGCCGATCAATTGGCT+GGG + chr1_3:52500653-52500672 Msa0124650:three_prime_UTR 45.0%
CAATGGTATACAGCATCCTC+AGG + chr1_3:52500676-52500695 Msa0124650:three_prime_UTR 45.0%
GATCAAAAGTTCTCTCCGGA+AGG + chr1_3:52500726-52500745 Msa0124650:three_prime_UTR 45.0%
GAAAGTTAAAGGCGGCAGAA+TGG + chr1_3:52500768-52500787 Msa0124650:three_prime_UTR 45.0%
GTTTCATCCACCTTACCGTT+GGG - chr1_3:52500814-52500833 None:intergenic 45.0%
TATCTCTCGAGACTGCATAC+AGG - chr1_3:52500836-52500855 None:intergenic 45.0%
GTATGCAGTCTCGAGAGATA+TGG + chr1_3:52500836-52500855 Msa0124650:three_prime_UTR 45.0%
GCTGCAACAATGATACTTGC+AGG + chr1_3:52500880-52500899 Msa0124650:three_prime_UTR 45.0%
ACTTGCAGGAATGGAAGAAG+AGG + chr1_3:52500894-52500913 Msa0124650:three_prime_UTR 45.0%
TATACCCTCAGCAGTTGTGA+AGG - chr1_3:52500920-52500939 None:intergenic 45.0%
!! GCTGAGGGTATATTTCTAGC+AGG + chr1_3:52500928-52500947 Msa0124650:three_prime_UTR 45.0%
!! AGGGTATATTTCTAGCAGGC+TGG + chr1_3:52500932-52500951 Msa0124650:three_prime_UTR 45.0%
CAAACAATCACTGATGGCAG+GGG - chr1_3:52500989-52501008 None:intergenic 45.0%
CACAAACAATCACTGATGGC+AGG - chr1_3:52500991-52501010 None:intergenic 45.0%
CTTTCTTGTGCATGTGTAGG+AGG + chr1_3:52501031-52501050 Msa0124650:intron 45.0%
!! ATACTGGTTTCAGACTCCAG+AGG + chr1_3:52501381-52501400 Msa0124650:three_prime_UTR 45.0%
CCGTCAATTGTAAATGCCTC+TGG - chr1_3:52501400-52501419 None:intergenic 45.0%
ATCGGTCCCTCATATACATG+AGG + chr1_3:52501425-52501444 Msa0124650:three_prime_UTR 45.0%
CAGTGGCCTCATGTATATGA+GGG - chr1_3:52501434-52501453 None:intergenic 45.0%
ACAGTGGCCTCATGTATATG+AGG - chr1_3:52501435-52501454 None:intergenic 45.0%
ACATGAGGCCACTGTCAATT+TGG + chr1_3:52501440-52501459 Msa0124650:three_prime_UTR 45.0%
CATGAGGCCACTGTCAATTT+GGG + chr1_3:52501441-52501460 Msa0124650:three_prime_UTR 45.0%
ATGAGGCCACTGTCAATTTG+GGG + chr1_3:52501442-52501461 Msa0124650:three_prime_UTR 45.0%
TATGCCAAAGGCAGTACTTG+AGG + chr1_3:52501483-52501502 Msa0124650:three_prime_UTR 45.0%
ATCCACCTATCTCCTGTTAG+AGG + chr1_3:52501532-52501551 Msa0124650:three_prime_UTR 45.0%
ATCCTCCTCTAACAGGAGAT+AGG - chr1_3:52501540-52501559 None:intergenic 45.0%
! GGGTTAGTAACAGTGTGAAG+AGG - chr1_3:52501682-52501701 None:intergenic 45.0%
!! AGCTTCTCTACGAGAGTGTT+GGG - chr1_3:52501702-52501721 None:intergenic 45.0%
TAAAAATGGTGGTCAAGGGC+CGG + chr1_3:52501724-52501743 Msa0124650:three_prime_UTR 45.0%
GTTACCAACTCGGATCGCTA+CGG - chr1_3:52490655-52490674 None:intergenic 50.0%
! AGGTTTTCGGTTGATCGAGG+AGG + chr1_3:52490941-52490960 Msa0124650:five_prime_UTR 50.0%
! CTTCTCCAAGCTTGTTCAGG+AGG - chr1_3:52491701-52491720 None:intergenic 50.0%
GTGGTCATATGTCAGGGAAG+AGG + chr1_3:52491998-52492017 Msa0124650:CDS 50.0%
GGAAGAGGCTTCTCATGGAA+GGG + chr1_3:52492013-52492032 Msa0124650:CDS 50.0%
TGCAAGCCATCTGCATCTCA+AGG + chr1_3:52492219-52492238 Msa0124650:CDS 50.0%
GCAAGCCATCTGCATCTCAA+GGG + chr1_3:52492220-52492239 Msa0124650:CDS 50.0%
CAAGCCATCTGCATCTCAAG+GGG + chr1_3:52492221-52492240 Msa0124650:CDS 50.0%
AGGAGTGGCAGCATATCAAG+AGG + chr1_3:52492448-52492467 Msa0124650:intron 50.0%
! GGTGATGGTTCACATAGACC+AGG - chr1_3:52492508-52492527 None:intergenic 50.0%
! GCATATTTGGTGGGAGTTCG+AGG + chr1_3:52494312-52494331 Msa0124650:intron 50.0%
! GTCTGGCTCACCTACGAATA+TGG - chr1_3:52494690-52494709 None:intergenic 50.0%
! GGAGCTTTGGTCTTCCAAAG+GGG - chr1_3:52495225-52495244 None:intergenic 50.0%
! GGGAGCTTTGGTCTTCCAAA+GGG - chr1_3:52495226-52495245 None:intergenic 50.0%
! AGGGAGCTTTGGTCTTCCAA+AGG - chr1_3:52495227-52495246 None:intergenic 50.0%
GAAGACCAAAGCTCCCTCTA+TGG + chr1_3:52495230-52495249 Msa0124650:intron 50.0%
TGCCTTTCCCTGGACTACTT+TGG + chr1_3:52496128-52496147 Msa0124650:intron 50.0%
ATCATTGGTCGTACACACGC+GGG - chr1_3:52496171-52496190 None:intergenic 50.0%
GATCATTGGTCGTACACACG+CGG - chr1_3:52496172-52496191 None:intergenic 50.0%
CTATCCCATGCCTAAAAGCG+CGG - chr1_3:52496320-52496339 None:intergenic 50.0%
GTAGAGACTGCATCAGTGTG+TGG + chr1_3:52496434-52496453 Msa0124650:intron 50.0%
ACTGCATCAGTGTGTGGTAG+AGG + chr1_3:52496440-52496459 Msa0124650:intron 50.0%
TCAGTGTGTGGTAGAGGATG+TGG + chr1_3:52496446-52496465 Msa0124650:intron 50.0%
AGAACGACCCCAGTGTATGA+AGG + chr1_3:52496572-52496591 Msa0124650:intron 50.0%
ACCCCAGTGTATGAAGGAAG+TGG + chr1_3:52496578-52496597 Msa0124650:intron 50.0%
ATGGGGATGACATGATAGGG+TGG + chr1_3:52496681-52496700 Msa0124650:intron 50.0%
GCCCTGATAGAATTGAGGGT+AGG + chr1_3:52496767-52496786 Msa0124650:intron 50.0%
AATCAAGACATTGCCCCCCA+TGG + chr1_3:52497084-52497103 Msa0124650:intron 50.0%
CATTGCCCCCCATGGTTATA+AGG + chr1_3:52497092-52497111 Msa0124650:intron 50.0%
! TGCTGCGTAGGCATCTGTTT+TGG + chr1_3:52497249-52497268 Msa0124650:intron 50.0%
TGCTGTTACGCTACTTCGGT+CGG - chr1_3:52497965-52497984 None:intergenic 50.0%
AGTGTCTCTCCAGGTGATGA+GGG - chr1_3:52498191-52498210 None:intergenic 50.0%
TAGTGTCTCTCCAGGTGATG+AGG - chr1_3:52498192-52498211 None:intergenic 50.0%
!! TGCTGTTTCAGCTTCCGCAT+GGG + chr1_3:52498217-52498236 Msa0124650:three_prime_UTR 50.0%
GTGTCAATGCATCATGAGCC+AGG - chr1_3:52498615-52498634 None:intergenic 50.0%
! TGCAGCTGACTCAACTGAGT+TGG - chr1_3:52499265-52499284 None:intergenic 50.0%
ACTCAGTTGAGTCAGCTGCA+TGG + chr1_3:52499265-52499284 Msa0124650:intron 50.0%
GCAAAGTAGAGTCTGGCAGA+AGG - chr1_3:52499658-52499677 None:intergenic 50.0%
TCCTAGGGGACATAGTCACT+TGG + chr1_3:52499820-52499839 Msa0124650:three_prime_UTR 50.0%
TCCAAGTGACTATGTCCCCT+AGG - chr1_3:52499824-52499843 None:intergenic 50.0%
CAAGCTGTCCTGTGTGAAGA+TGG + chr1_3:52500103-52500122 Msa0124650:three_prime_UTR 50.0%
CTGTCCTGTGTGAAGATGGA+AGG + chr1_3:52500107-52500126 Msa0124650:three_prime_UTR 50.0%
CTCTCCTTCCATCTTCACAC+AGG - chr1_3:52500114-52500133 None:intergenic 50.0%
!! AGTTTCTGGCAGAGGGAAAC+TGG + chr1_3:52500137-52500156 Msa0124650:three_prime_UTR 50.0%
!! GTTTCTGGCAGAGGGAAACT+GGG + chr1_3:52500138-52500157 Msa0124650:three_prime_UTR 50.0%
! TTTCTGGCAGAGGGAAACTG+GGG + chr1_3:52500139-52500158 Msa0124650:three_prime_UTR 50.0%
CCATGTACTCCATTGCAGCT+CGG - chr1_3:52500354-52500373 None:intergenic 50.0%
CACAGTAAGCACTCACACCA+TGG - chr1_3:52500453-52500472 None:intergenic 50.0%
CATGGTGTGAGTGCTTACTG+TGG + chr1_3:52500451-52500470 Msa0124650:three_prime_UTR 50.0%
GTGCTTACTGTGGTGGTCTT+TGG + chr1_3:52500461-52500480 Msa0124650:three_prime_UTR 50.0%
TCTTCAAGCTGCAGCTGCAA+TGG + chr1_3:52500492-52500511 Msa0124650:three_prime_UTR 50.0%
GCTGCAATGGCCATTCAACT+AGG + chr1_3:52500505-52500524 Msa0124650:three_prime_UTR 50.0%
CCATTGCCCAGCCAATTGAT+CGG - chr1_3:52500662-52500681 None:intergenic 50.0%
AAAAAGAGAGGGAAGCCCTG+AGG - chr1_3:52500695-52500714 None:intergenic 50.0%
GTGAATGGCATGCATCCCAA+CGG + chr1_3:52500796-52500815 Msa0124650:three_prime_UTR 50.0%
GGTTTCATCCACCTTACCGT+TGG - chr1_3:52500815-52500834 None:intergenic 50.0%
ATATGGGCAGGTGTGACCTA+CGG + chr1_3:52500853-52500872 Msa0124650:three_prime_UTR 50.0%
CATTGTTGCAGCAACACCGT+AGG - chr1_3:52500872-52500891 None:intergenic 50.0%
! GGCTGGTCAGAAGAAGGATA+CGG + chr1_3:52500949-52500968 Msa0124650:three_prime_UTR 50.0%
GCTGGTCAGAAGAAGGATAC+GGG + chr1_3:52500950-52500969 Msa0124650:three_prime_UTR 50.0%
TGCATGCCCCAAATTGACAG+TGG - chr1_3:52501451-52501470 None:intergenic 50.0%
CTCCTCTAACAGGAGATAGG+TGG - chr1_3:52501537-52501556 None:intergenic 50.0%
CACCTATCTCCTGTTAGAGG+AGG + chr1_3:52501535-52501554 Msa0124650:three_prime_UTR 50.0%
! CAGCTTCTCTACGAGAGTGT+TGG - chr1_3:52501703-52501722 None:intergenic 50.0%
AAAAATGGTGGTCAAGGGCC+GGG + chr1_3:52501725-52501744 Msa0124650:three_prime_UTR 50.0%
! AATGATGGCGTGGCGAGATG+AGG - chr1_3:52490730-52490749 None:intergenic 55.0%
! GGTGCAGAAGAATGATGGCG+TGG - chr1_3:52490740-52490759 None:intergenic 55.0%
GCTGTCACTATAGTCCACGG+AGG - chr1_3:52491527-52491546 None:intergenic 55.0%
GGCGCTGTCACTATAGTCCA+CGG - chr1_3:52491530-52491549 None:intergenic 55.0%
CTGCTCCTCCTGAACAAGCT+TGG + chr1_3:52491693-52491712 Msa0124650:CDS 55.0%
GTCAGGGAAGAGGCTTCTCA+TGG + chr1_3:52492008-52492027 Msa0124650:CDS 55.0%
GGGAAGAGGCTTCTCATGGA+AGG + chr1_3:52492012-52492031 Msa0124650:CDS 55.0%
GGAACCCCTTGAGATGCAGA+TGG - chr1_3:52492228-52492247 None:intergenic 55.0%
GCATCTCAAGGGGTTCCACT+TGG + chr1_3:52492231-52492250 Msa0124650:CDS 55.0%
TCTCAAGGGGTTCCACTTGG+AGG + chr1_3:52492234-52492253 Msa0124650:CDS 55.0%
CTCAAGGGGTTCCACTTGGA+GGG + chr1_3:52492235-52492254 Msa0124650:CDS 55.0%
TCATACCCCATCCCTCCAAG+TGG - chr1_3:52492249-52492268 None:intergenic 55.0%
ATATGCTGCCACTCCTGCGT+AGG - chr1_3:52492444-52492463 None:intergenic 55.0%
! TGGTTGGCCATGACAGGTGA+TGG - chr1_3:52492523-52492542 None:intergenic 55.0%
! GAGAACTGGTTGGCCATGAC+AGG - chr1_3:52492529-52492548 None:intergenic 55.0%
CCTACACCTTCATGCTGACC+GGG - chr1_3:52493620-52493639 None:intergenic 55.0%
CCCTACACCTTCATGCTGAC+CGG - chr1_3:52493621-52493640 None:intergenic 55.0%
! CCGGTCAGCATGAAGGTGTA+GGG + chr1_3:52493618-52493637 Msa0124650:intron 55.0%
GGTGGGAACTCTCACTTGTC+AGG + chr1_3:52495776-52495795 Msa0124650:CDS 55.0%
AGAGCTGAAGATGGCGTCTC+CGG + chr1_3:52495921-52495940 Msa0124650:intron 55.0%
! TTGGTCCGCGCTTTTAGGCA+TGG + chr1_3:52496312-52496331 Msa0124650:intron 55.0%
! TGGTCCGCGCTTTTAGGCAT+GGG + chr1_3:52496313-52496332 Msa0124650:intron 55.0%
! TGGTGTGCCAGACACTGGTT+CGG + chr1_3:52496598-52496617 Msa0124650:intron 55.0%
!! ACACTGGTTCGGCTGGTACA+AGG + chr1_3:52496609-52496628 Msa0124650:intron 55.0%
AGCGATGCAGATGATCCTCC+AGG - chr1_3:52497052-52497071 None:intergenic 55.0%
ATGTGCGTTGTGTGCTGCGT+AGG + chr1_3:52497237-52497256 Msa0124650:intron 55.0%
GCAGCACATAGTGTCTCTCC+AGG - chr1_3:52498200-52498219 None:intergenic 55.0%
!! CTGCTGTTTCAGCTTCCGCA+TGG + chr1_3:52498216-52498235 Msa0124650:three_prime_UTR 55.0%
TGTTTCAGCTTCCGCATGGG+TGG + chr1_3:52498220-52498239 Msa0124650:three_prime_UTR 55.0%
GGGAAACTGGGGAACTCGTA+AGG + chr1_3:52500150-52500169 Msa0124650:three_prime_UTR 55.0%
TGGGGCTGTCCCACATGATT+TGG + chr1_3:52500177-52500196 Msa0124650:three_prime_UTR 55.0%
GGGGCTGTCCCACATGATTT+GGG + chr1_3:52500178-52500197 Msa0124650:three_prime_UTR 55.0%
GGGCTGTCCCACATGATTTG+GGG + chr1_3:52500179-52500198 Msa0124650:three_prime_UTR 55.0%
CCGAGCTGCAATGGAGTACA+TGG + chr1_3:52500351-52500370 Msa0124650:three_prime_UTR 55.0%
GGTGTGAGTGCTTACTGTGG+TGG + chr1_3:52500454-52500473 Msa0124650:three_prime_UTR 55.0%
CCGATCAATTGGCTGGGCAA+TGG + chr1_3:52500659-52500678 Msa0124650:three_prime_UTR 55.0%
! GGCAGAATGGGTGCTGTGAA+TGG + chr1_3:52500781-52500800 Msa0124650:three_prime_UTR 55.0%
TGGCATGCATCCCAACGGTA+AGG + chr1_3:52500801-52500820 Msa0124650:three_prime_UTR 55.0%
CATGCATCCCAACGGTAAGG+TGG + chr1_3:52500804-52500823 Msa0124650:three_prime_UTR 55.0%
CAGTCTCGAGAGATATGGGC+AGG + chr1_3:52500841-52500860 Msa0124650:three_prime_UTR 55.0%
AGAGGCCTTCACAACTGCTG+AGG + chr1_3:52500912-52500931 Msa0124650:three_prime_UTR 55.0%
GAGGCCTTCACAACTGCTGA+GGG + chr1_3:52500913-52500932 Msa0124650:three_prime_UTR 55.0%
! CTAGCAGGCTGGTCAGAAGA+AGG + chr1_3:52500943-52500962 Msa0124650:three_prime_UTR 55.0%
AAAATGGTGGTCAAGGGCCG+GGG + chr1_3:52501726-52501745 Msa0124650:three_prime_UTR 55.0%
CTCTCCGTAGCGATCCGAGT+TGG + chr1_3:52490648-52490667 Msa0124650:five_prime_UTR 60.0%
CCTGTAACACCGAGTCAGCG+TGG - chr1_3:52490699-52490718 None:intergenic 60.0%
!! CCACGCTGACTCGGTGTTAC+AGG + chr1_3:52490696-52490715 Msa0124650:five_prime_UTR 60.0%
!! CGCTGACTCGGTGTTACAGG+CGG + chr1_3:52490699-52490718 Msa0124650:five_prime_UTR 60.0%
! TGTGTGAGGCGCTATCACCG+TGG + chr1_3:52491328-52491347 Msa0124650:intron 60.0%
AGGGGTTCCACTTGGAGGGA+TGG + chr1_3:52492239-52492258 Msa0124650:CDS 60.0%
GGGGTTCCACTTGGAGGGAT+GGG + chr1_3:52492240-52492259 Msa0124650:CDS 60.0%
GGGTTCCACTTGGAGGGATG+GGG + chr1_3:52492241-52492260 Msa0124650:CDS 60.0%
TTGGCTCCCGGTCAGCATGA+AGG + chr1_3:52493611-52493630 Msa0124650:intron 60.0%
! CCCGGTCAGCATGAAGGTGT+AGG + chr1_3:52493617-52493636 Msa0124650:intron 60.0%
GGAAGTGGTGTGCCAGACAC+TGG + chr1_3:52496593-52496612 Msa0124650:intron 60.0%
GTACCAGCCGAACCAGTGTC+TGG - chr1_3:52496608-52496627 None:intergenic 60.0%
CGATTGTAGGGGGTTCCCGA+AGG + chr1_3:52496728-52496747 Msa0124650:intron 60.0%
CGGTCGGACAGCCCAAAACA+TGG - chr1_3:52497949-52497968 None:intergenic 60.0%
! CCAGGTGATGAGGGCATGCT+GGG - chr1_3:52498182-52498201 None:intergenic 60.0%
! TCCAGGTGATGAGGGCATGC+TGG - chr1_3:52498183-52498202 None:intergenic 60.0%
TCCATGGGGTTCCACCCATG+CGG - chr1_3:52498234-52498253 None:intergenic 60.0%
TGAGAGAGCTGCAGTGCACC+TGG + chr1_3:52498594-52498613 Msa0124650:three_prime_UTR 60.0%
TCCATTGCAGCTCGGACAGC+AGG - chr1_3:52500346-52500365 None:intergenic 60.0%
! GGGGCCTCAAGTACTGCCTT+TGG - chr1_3:52501490-52501509 None:intergenic 60.0%
! TTCGCCACGCCACGCTGACT+CGG + chr1_3:52490687-52490706 Msa0124650:five_prime_UTR 65.0%
AACACCGAGTCAGCGTGGCG+TGG - chr1_3:52490694-52490713 None:intergenic 65.0%
!! GTGCCAGACACTGGTTCGGC+TGG + chr1_3:52496602-52496621 Msa0124650:intron 65.0%
CCCAGCATGCCCTCATCACC+TGG + chr1_3:52498179-52498198 Msa0124650:three_prime_UTR 65.0%
TCCGCATGGGTGGAACCCCA+TGG + chr1_3:52498230-52498249 Msa0124650:three_prime_UTR 65.0%
GCCTGCTGTCCGAGCTGCAA+TGG + chr1_3:52500342-52500361 Msa0124650:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52490575 52501964 52490575 ID=Msa0124650;Name=Msa0124650
chr1_3 mRNA 52490575 52501964 52490575 ID=Msa0124650-mRNA-1;Parent=Msa0124650;Name=Msa0124650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=405|0.89|0.9|0.95|0.84|0.75|20|2422|311
chr1_3 exon 52490575 52490824 52490575 ID=Msa0124650-mRNA-1:exon:16125;Parent=Msa0124650-mRNA-1
chr1_3 exon 52490845 52491098 52490845 ID=Msa0124650-mRNA-1:exon:16126;Parent=Msa0124650-mRNA-1
chr1_3 exon 52491677 52491787 52491677 ID=Msa0124650-mRNA-1:exon:16127;Parent=Msa0124650-mRNA-1
chr1_3 exon 52491978 52492034 52491978 ID=Msa0124650-mRNA-1:exon:16128;Parent=Msa0124650-mRNA-1
chr1_3 exon 52492186 52492262 52492186 ID=Msa0124650-mRNA-1:exon:16129;Parent=Msa0124650-mRNA-1
chr1_3 exon 52492450 52492549 52492450 ID=Msa0124650-mRNA-1:exon:16130;Parent=Msa0124650-mRNA-1
chr1_3 exon 52493566 52493620 52493566 ID=Msa0124650-mRNA-1:exon:16131;Parent=Msa0124650-mRNA-1
chr1_3 exon 52493979 52494021 52493979 ID=Msa0124650-mRNA-1:exon:16132;Parent=Msa0124650-mRNA-1
chr1_3 exon 52494506 52494615 52494506 ID=Msa0124650-mRNA-1:exon:16133;Parent=Msa0124650-mRNA-1
chr1_3 exon 52494699 52494802 52494699 ID=Msa0124650-mRNA-1:exon:16134;Parent=Msa0124650-mRNA-1
chr1_3 exon 52495620 52495673 52495620 ID=Msa0124650-mRNA-1:exon:16135;Parent=Msa0124650-mRNA-1
chr1_3 exon 52495767 52495822 52495767 ID=Msa0124650-mRNA-1:exon:16136;Parent=Msa0124650-mRNA-1
chr1_3 exon 52495923 52495994 52495923 ID=Msa0124650-mRNA-1:exon:16137;Parent=Msa0124650-mRNA-1
chr1_3 exon 52497870 52498011 52497870 ID=Msa0124650-mRNA-1:exon:16138;Parent=Msa0124650-mRNA-1
chr1_3 exon 52498143 52498327 52498143 ID=Msa0124650-mRNA-1:exon:16139;Parent=Msa0124650-mRNA-1
chr1_3 exon 52498567 52498634 52498567 ID=Msa0124650-mRNA-1:exon:16140;Parent=Msa0124650-mRNA-1
chr1_3 exon 52498797 52498869 52498797 ID=Msa0124650-mRNA-1:exon:16141;Parent=Msa0124650-mRNA-1
chr1_3 exon 52499476 52499537 52499476 ID=Msa0124650-mRNA-1:exon:16142;Parent=Msa0124650-mRNA-1
chr1_3 exon 52499666 52500971 52499666 ID=Msa0124650-mRNA-1:exon:16143;Parent=Msa0124650-mRNA-1
chr1_3 exon 52501381 52501964 52501381 ID=Msa0124650-mRNA-1:exon:16144;Parent=Msa0124650-mRNA-1
chr1_3 five_prime_UTR 52490575 52490824 52490575 ID=Msa0124650-mRNA-1:five_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 five_prime_UTR 52490845 52490999 52490845 ID=Msa0124650-mRNA-1:five_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52491000 52491098 52491000 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52491677 52491787 52491677 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52491978 52492034 52491978 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52492186 52492262 52492186 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52492450 52492549 52492450 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52493566 52493620 52493566 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52493979 52494021 52493979 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52494506 52494615 52494506 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52494699 52494802 52494699 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52495620 52495673 52495620 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52495767 52495822 52495767 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 CDS 52495923 52495992 52495923 ID=Msa0124650-mRNA-1:cds;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52495993 52495994 52495993 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52497870 52498011 52497870 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52498143 52498327 52498143 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52498567 52498634 52498567 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52498797 52498869 52498797 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52499476 52499537 52499476 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52499666 52500971 52499666 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
chr1_3 three_prime_UTR 52501381 52501964 52501381 ID=Msa0124650-mRNA-1:three_prime_utr;Parent=Msa0124650-mRNA-1
Gene Sequence

>Msa0124650

ATGAGAGATTTGGAAAGAATGGTTAGCGGCAATTTATTTCATTGTAGAAAGAATTCGTGGCCTACTGAAGAGTATATCAATAAAACCACCTTACAGTTGTTTGATATTGATAATGCTGCTCCTCCTGAACAAGCTTGGAGAAGAAGATTAAACAGCCATGCCAATCTTCTTAAAGAATTTAGAGTAACTTTTATGGAAGCTATAAAGATGGTTCGATTAGGTATACGAATGTGGTCATATGTCAGGGAAGAGGCTTCTCATGGAAGGAAAGCACCTATAGATCCTTTCACTCGAGAAAGTTGCAAGCCATCTGCATCTCAAGGGGTTCCACTTGGAGGGATGGGGAGTGGCAGCATATCAAGAGGATTTAGAGGTGAATTCAGACAATGGCAAATCATTCCTGGTCTATGTGAACCATCACCTGTCATGGCCAACCAGTTCTCTATTTTTGTAAGTAGAGAGGGAGGAAACAAAAGTTTTGCATCAGTTTTGGCTCCCGATTCACCATTTTATGCCACTGTTACTGCTTCATGTCACTGCAAAATTAGCAGGAAAGCTGATGATCAGGGTATATCATCATGGGGATGGAATCTAAATGGCCAGCACTCAACATACCATGCTTTGTTTCCAAGAGCTTGGACTGTTTATGATGGTGAGCCAGACCCAGAACTAAAAATATCATGTCGGCAGATATCCCCTTTCATACCACATAATTACAGAGAAAGCAGTCTACCTGCTGCCGTTTTTGTCTATACGTTGGTAAACACTGGTAAAGAAAGAGCTAAAGTCAGCCTTTTATTTACTTGGGCGAATTCTATTGGTGGGAACTCTCACTTGTCAGGAGATCATGTGAATGAACCTTTCATAGCTGAAGATGGCGTCTCCGGCGTACTTCTATATCACAAGCAAGTTATCAAACCTTATAGCTATATATGA
Protein sequence

>Msa0124650

MRDLERMVSGNLFHCRKNSWPTEEYINKTTLQLFDIDNAAPPEQAWRRRLNSHANLLKEFRVTFMEAIKMVRLGIRMWSYVREEASHGRKAPIDPFTRESCKPSASQGVPLGGMGSGSISRGFRGEFRQWQIIPGLCEPSPVMANQFSIFVSREGGNKSFASVLAPDSPFYATVTASCHCKISRKADDQGISSWGWNLNGQHSTYHALFPRAWTVYDGEPDPELKISCRQISPFIPHNYRESSLPAAVFVYTLVNTGKERAKVSLLFTWANSIGGNSHLSGDHVNEPFIAEDGVSGVLLYHKQVIKPYSYI*