AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0179840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179840 MtrunA17_Chr1g0205751 99.574 704 3 0 1 704 1 704 0.0 1431
Msa0179840 MtrunA17_Chr5g0394261 85.137 693 101 1 12 702 7 699 0.0 1176
Msa0179840 MtrunA17_Chr7g0259851 63.783 682 239 4 18 698 11 685 0.0 848
Msa0179840 MtrunA17_Chr1g0149211 27.436 390 251 13 137 508 104 479 1.66e-19 92.8
Msa0179840 MtrunA17_Chr7g0259501 31.288 163 92 3 517 664 187 344 1.14e-16 82.8
Msa0179840 MtrunA17_Chr1g0152561 26.400 250 176 3 295 536 74 323 2.13e-16 81.3
Msa0179840 MtrunA17_Chr3g0106931 30.978 184 125 2 194 377 549 730 2.90e-15 80.1
Msa0179840 MtrunA17_Chr1g0185861 31.098 164 89 4 519 664 191 348 3.04e-15 78.6
Msa0179840 MtrunA17_Chr5g0440341 26.020 196 123 6 524 700 183 375 7.06e-13 71.2
Msa0179840 MtrunA17_Chr4g0031431 30.769 195 131 4 198 391 353 544 4.16e-12 69.7
Msa0179840 MtrunA17_Chr7g0261371 28.270 237 161 4 175 411 497 724 6.49e-12 68.9
Msa0179840 MtrunA17_Chr4g0074371 24.138 319 217 10 59 372 47 345 1.90e-11 67.0
Msa0179840 MtrunA17_Chr1g0199321 30.928 194 132 2 198 391 345 536 6.41e-11 65.9
Msa0179840 MtrunA17_Chr3g0084371 25.161 310 202 8 220 513 238 533 9.23e-11 65.5
Msa0179840 MtrunA17_Chr4g0044411 27.778 198 141 2 198 395 373 568 9.93e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0179840 AT5G19330.1 79.173 701 142 2 4 702 6 704 0.0 1098
Msa0179840 AT5G19330.2 73.077 650 116 7 4 645 6 604 0.0 872
Msa0179840 AT5G13060.1 62.121 660 248 2 39 697 68 726 0.0 833
Msa0179840 AT3G06190.5 32.022 178 99 4 522 681 182 355 1.38e-17 85.5
Msa0179840 AT3G06190.1 32.298 161 88 3 522 664 182 339 8.21e-17 83.6
Msa0179840 AT5G19000.1 29.747 158 96 2 522 664 183 340 2.41e-14 76.3
Msa0179840 AT5G19000.3 29.747 158 96 2 522 664 183 340 2.41e-14 76.3
Msa0179840 AT3G03740.1 31.126 151 87 2 533 667 210 359 4.53e-14 75.9
Msa0179840 AT3G43700.3 34.694 147 77 4 539 667 205 350 1.03e-13 73.6
Msa0179840 AT3G43700.2 34.694 147 77 4 539 667 205 350 1.06e-13 73.9
Msa0179840 AT2G23140.1 30.978 184 125 2 194 377 542 723 1.28e-13 75.1
Msa0179840 AT2G23140.2 30.978 184 125 2 194 377 539 720 1.30e-13 75.1
Msa0179840 AT2G23140.4 30.978 184 125 2 194 377 539 720 1.30e-13 75.1
Msa0179840 AT3G43700.1 34.694 147 77 4 539 667 205 350 1.41e-13 73.9
Msa0179840 AT1G23030.1 25.798 376 236 9 140 509 272 610 1.90e-13 74.3
Msa0179840 AT2G23140.3 30.978 184 125 2 194 377 350 531 2.28e-13 73.9
Msa0179840 AT2G23140.5 30.978 184 125 2 194 377 350 531 2.28e-13 73.9
Msa0179840 AT3G46510.1 26.502 283 173 6 198 480 354 601 2.56e-13 73.9
Msa0179840 AT4G02150.1 25.407 307 202 11 72 372 139 424 4.86e-13 72.8
Msa0179840 AT3G01400.1 26.147 218 145 4 290 495 73 286 1.48e-12 70.1
Msa0179840 AT5G67340.1 25.714 280 185 7 146 411 364 634 2.21e-12 70.9
Msa0179840 AT5G67340.2 25.714 280 185 7 146 411 364 634 2.21e-12 70.9
Msa0179840 AT4G02150.2 25.172 290 191 10 72 356 139 407 3.44e-12 69.3
Msa0179840 AT5G58680.1 25.229 218 151 3 288 495 69 284 3.71e-12 68.9
Msa0179840 AT2G39760.1 32.143 140 77 2 540 664 195 331 2.02e-11 67.0
Msa0179840 AT2G39760.2 32.143 140 77 2 540 664 195 331 2.66e-11 66.2
Msa0179840 AT2G39760.4 32.143 140 77 2 540 664 195 331 3.07e-11 65.9
Msa0179840 AT2G39760.3 32.143 140 77 2 540 664 195 331 3.07e-11 65.9
Msa0179840 AT3G06720.1 22.500 320 221 9 59 372 123 421 4.05e-11 66.6
Msa0179840 AT3G06720.2 22.500 320 221 9 59 372 123 421 4.05e-11 66.6

Find 203 sgRNAs with CRISPR-Local

Find 614 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTCCCATCTAATATT+TGG 0.076983 1_4:-67550293 None:intergenic
GCCGCTTCCCTCTGACTTTC+AGG 0.083665 1_4:-67546127 None:intergenic
CCCTTCTTCTCTCTCGTTCA+TGG 0.174906 1_4:+67542917 Msa0179840:exon
ATTAAACTGCTGGGTAATTT+AGG 0.203631 1_4:+67551738 Msa0179840:three_prime_UTR
CTCTTATTCTTCCTCTCTAC+TGG 0.226379 1_4:-67551978 None:intergenic
GGTGCTTTACAACCAGTTAT+TGG 0.256939 1_4:+67545901 Msa0179840:CDS
AGACAGGGCCGAGGCTTTAT+TGG 0.273094 1_4:-67548790 None:intergenic
TGCCTTTGCATTGGGGAGAT+TGG 0.285881 1_4:+67546725 Msa0179840:CDS
TCACTGCAGATTACAGTCTA+TGG 0.287035 1_4:-67551373 None:intergenic
AGAACCTCTTTCTTTATATT+CGG 0.303887 1_4:-67545871 None:intergenic
AAAGGGAGTGCTTTCGCATT+AGG 0.305562 1_4:+67543383 Msa0179840:CDS
CCTACGAATGAGACTATTAA+TGG 0.310848 1_4:-67545300 None:intergenic
TCCACCACTTGTTCATTTGC+TGG 0.314607 1_4:+67545478 Msa0179840:CDS
CAATGTTTGATGGTGGTTAT+AGG 0.316662 1_4:+67549883 Msa0179840:CDS
ATAATGTGTCGGATTTCATT+AGG 0.317549 1_4:+67548013 Msa0179840:CDS
TGTCTCTCAGGATATATTAC+TGG 0.318295 1_4:+67550661 Msa0179840:intron
AAACTTCCCATCTAATATTT+GGG 0.326330 1_4:-67550292 None:intergenic
AGAGAAAATCAGATAGAAAA+TGG 0.329660 1_4:-67542842 None:intergenic
CAAGACATTGAAAAGATTAG+AGG 0.333836 1_4:+67548294 Msa0179840:CDS
GCGTCCAGATTTATATATAC+TGG 0.337107 1_4:+67550420 Msa0179840:intron
TAGAGATCCCAAATATTAGA+TGG 0.348876 1_4:+67550285 Msa0179840:CDS
AAGAAAGAGGTTCTATTTGC+TGG 0.352180 1_4:+67545880 Msa0179840:CDS
TGTGGAAGGAGGTGCGATTC+CGG 0.359310 1_4:+67543283 Msa0179840:CDS
TTCACAAACAATTAAACTGC+TGG 0.367993 1_4:+67551728 Msa0179840:three_prime_UTR
GAAATGTCTGCCTTTGCATT+GGG 0.370822 1_4:+67546717 Msa0179840:CDS
TCTCGTCGAAGTTGCTAATC+AGG 0.372235 1_4:+67543067 Msa0179840:CDS
AGCACCATCAAGTTGCTGTT+TGG 0.377790 1_4:-67548748 None:intergenic
TACCTAAGTAATCCAATAAC+TGG 0.378852 1_4:-67545913 None:intergenic
TTCTGAACGCAATCAGTAAC+AGG 0.383768 1_4:-67543332 None:intergenic
TTGAACCTACCTGTGGTGTT+GGG 0.384221 1_4:-67548836 None:intergenic
AGATAGAAAATGGCGAGAAT+TGG 0.385650 1_4:-67542832 None:intergenic
AGAAGGTCTTGAGCAATATC+TGG 0.388231 1_4:-67550459 None:intergenic
CCTCAATGATAATGCATTGA+AGG 0.391244 1_4:-67550717 None:intergenic
AAGAATAAGAGGGGTGCAGT+TGG 0.392577 1_4:+67551990 Msa0179840:three_prime_UTR
GACGAGATCTGACGGTCTTC+CGG 0.398909 1_4:-67543011 None:intergenic
AAATGATGAAAATAAAATTC+AGG 0.399085 1_4:+67545562 Msa0179840:CDS
GTGACACCAGCAGCATGCCT+TGG 0.403277 1_4:-67551834 None:intergenic
AGTCGACCTGTATACCATAA+AGG 0.404275 1_4:-67551474 None:intergenic
CTTTCTTTCTTTCTTTGATG+TGG 0.410738 1_4:+67551547 Msa0179840:three_prime_UTR
ATTCTTCTTTGATCATCTGC+AGG 0.411866 1_4:-67548558 None:intergenic
CCGCTTCCCTCTGACTTTCA+GGG 0.417129 1_4:-67546126 None:intergenic
GAAGGAGGAGCGGCGTCTAC+AGG 0.419776 1_4:-67548813 None:intergenic
ACAAAGTAATTGCGGATCTC+TGG 0.420288 1_4:-67551326 None:intergenic
ACAATTAGTTGTTGATGTTC+CGG 0.420661 1_4:-67545209 None:intergenic
TACATTCTGTACATCGCAAT+TGG 0.421151 1_4:-67551415 None:intergenic
TAATGTGTCGGATTTCATTA+GGG 0.421529 1_4:+67548014 Msa0179840:CDS
AGGGAAGCGGCATTGTTACT+TGG 0.426859 1_4:+67546139 Msa0179840:CDS
ATTGGAAATGAAGATTTGAA+TGG 0.428270 1_4:-67542814 None:intergenic
TGTACATCGCAATTGGTTAG+AGG 0.428663 1_4:-67551408 None:intergenic
AGCTCCAAACAGCAACTTGA+TGG 0.434657 1_4:+67548744 Msa0179840:CDS
TCATAGATATAGTAAATATA+CGG 0.436226 1_4:+67551604 Msa0179840:three_prime_UTR
CAGTAGAGAGGAAGAATAAG+AGG 0.436926 1_4:+67551979 Msa0179840:three_prime_UTR
TTCTCAACTTCATGCTCAAA+CGG 0.439189 1_4:-67543362 None:intergenic
TTCTTGTGTTGTACCAGGAA+GGG 0.439973 1_4:+67551446 Msa0179840:three_prime_UTR
GCATTTCGTGCAATGTTTGA+TGG 0.440899 1_4:+67549873 Msa0179840:CDS
TAAGTTAGACGAAGAATTAC+CGG 0.441802 1_4:+67542992 Msa0179840:CDS
AATGTTTGATGGTGGTTATA+GGG 0.449011 1_4:+67549884 Msa0179840:CDS
AAGATCAACAAGGTGTGTTA+AGG 0.453328 1_4:-67545243 None:intergenic
TGACACCAGCAGCATGCCTT+GGG 0.456887 1_4:-67551833 None:intergenic
ATTTGAATGGATCACAGAAC+TGG 0.458152 1_4:-67542801 None:intergenic
AGAAATGTCTGCCTTTGCAT+TGG 0.459751 1_4:+67546716 Msa0179840:CDS
ATCAAGTTGCTGTTTGGAGC+TGG 0.459757 1_4:-67548742 None:intergenic
TGCTCATAGAATTTGTCTAC+TGG 0.460117 1_4:+67549839 Msa0179840:CDS
TGCATTGGGGAGATTGGCCC+AGG 0.465694 1_4:+67546731 Msa0179840:CDS
ATTTCTCTAAGTTGTACATC+AGG 0.465886 1_4:-67546699 None:intergenic
AATAAGAGGGGTGCAGTTGG+AGG 0.466339 1_4:+67551993 Msa0179840:three_prime_UTR
TTTCTTGTGTTGTACCAGGA+AGG 0.469611 1_4:+67551445 Msa0179840:three_prime_UTR
TCTTGTGTTGTACCAGGAAG+GGG 0.473703 1_4:+67551447 Msa0179840:three_prime_UTR
TCCATGAACGAGAGAGAAGA+AGG 0.480698 1_4:-67542918 None:intergenic
AAATGAAATGCGTAGAGAAA+AGG 0.480714 1_4:+67551934 Msa0179840:three_prime_UTR
TCTTATTCTTCCTCTCTACT+GGG 0.481698 1_4:-67551977 None:intergenic
GGGTCTCCTTTATGGTATAC+AGG 0.483215 1_4:+67551468 Msa0179840:three_prime_UTR
TTTCTTATGCAATATTGTGA+TGG 0.483721 1_4:+67551643 Msa0179840:three_prime_UTR
CTTGAACCTACCTGTGGTGT+TGG 0.487149 1_4:-67548837 None:intergenic
AACAATTATCATATGAGGAA+TGG 0.488923 1_4:-67551668 None:intergenic
GAGCGGCGTCTACAGGAGAC+AGG 0.489511 1_4:-67548806 None:intergenic
CATGAGAGGCAAACCTGACA+TGG 0.490179 1_4:-67545373 None:intergenic
GATAAGTTGAGCGCGAGGCC+AGG 0.490906 1_4:+67550773 Msa0179840:CDS
TACGGCCCAAGGCATGCTGC+TGG 0.492787 1_4:+67551828 Msa0179840:three_prime_UTR
TCACTGCCTCTCCGAGAGGA+AGG 0.495947 1_4:+67542959 Msa0179840:CDS
ACTGCCTCTCCGAGAGGAAG+GGG 0.496118 1_4:+67542961 Msa0179840:CDS
TCTCGGAGAGGCAGTGACCT+TGG 0.498509 1_4:-67542953 None:intergenic
TTTGAGCATGAAGTTGAGAA+AGG 0.499940 1_4:+67543365 Msa0179840:CDS
GTATTACAGGTTGGTGTGAT+CGG 0.500755 1_4:+67545829 Msa0179840:intron
ATCTTATGCGAGTTTCAGAA+AGG 0.503114 1_4:+67548493 Msa0179840:CDS
GCAACATTAAAACCCATGTC+AGG 0.505215 1_4:+67545360 Msa0179840:CDS
ACGTTAACAATTATCATATG+AGG 0.508263 1_4:-67551673 None:intergenic
TTCTTCTTACAGGTTTACTT+AGG 0.509350 1_4:+67549621 Msa0179840:intron
TCTTATGCGAGTTTCAGAAA+GGG 0.510889 1_4:+67548494 Msa0179840:CDS
AGATATGTTCCGTAGACCTA+TGG 0.512252 1_4:-67551909 None:intergenic
TTTCTGTGTAGGATGGAAGG+TGG 0.512896 1_4:+67545452 Msa0179840:intron
TTATGGCCTTGCAGAGAATG+AGG 0.514595 1_4:+67547184 Msa0179840:CDS
TAATGATGCTAGAGACAGAA+AGG 0.515534 1_4:-67551578 None:intergenic
TGTCAGACGACAGGAATTAA+CGG 0.516782 1_4:-67551766 None:intergenic
TGTGGTGTTGGTTGGCGCTA+TGG 0.517130 1_4:-67542884 None:intergenic
CCATTAATAGTCTCATTCGT+AGG 0.517559 1_4:+67545300 Msa0179840:CDS
AGATTACAGTCTATGGGAGT+TGG 0.519743 1_4:-67551366 None:intergenic
GCACGTTCGTCGGCGGTAGG+CGG 0.520168 1_4:-67543038 None:intergenic
CCCTGAAAGTCAGAGGGAAG+CGG 0.523107 1_4:+67546126 Msa0179840:CDS
AGAGAACATGCACTACTCTC+TGG 0.523360 1_4:-67551514 None:intergenic
TGGCGCTATGGTTAACAGAA+TGG 0.523930 1_4:-67542872 None:intergenic
CTCGCCGATCTCGCTAAGAA+TGG 0.528620 1_4:+67543161 Msa0179840:CDS
ATTGATCAGCTGCTCGAAGA+AGG 0.530249 1_4:-67550476 None:intergenic
TTAATTCCTGTCGTCTGACA+TGG 0.531784 1_4:+67551769 Msa0179840:three_prime_UTR
CACTGCCTCTCCGAGAGGAA+GGG 0.532570 1_4:+67542960 Msa0179840:CDS
ACCTGTGGTGTTGGGGAAGG+AGG 0.535565 1_4:-67548828 None:intergenic
TCCTCCTTCCCCAACACCAC+AGG 0.536648 1_4:+67548827 Msa0179840:CDS
TTGAGCATGAAGTTGAGAAA+GGG 0.538121 1_4:+67543366 Msa0179840:CDS
ATCTCCGAATATAAAGAAAG+AGG 0.539197 1_4:+67545867 Msa0179840:CDS
ATAAGTTGAGCGCGAGGCCA+GGG 0.542921 1_4:+67550774 Msa0179840:CDS
TGCTGTGGCTTTATGCAAGT+TGG 0.544148 1_4:+67548767 Msa0179840:CDS
TTCTTCTTTGATCATCTGCA+GGG 0.544161 1_4:-67548557 None:intergenic
CCTTCAATGCATTATCATTG+AGG 0.544504 1_4:+67550717 Msa0179840:CDS
TGGTGTTGGGGAAGGAGGAG+CGG 0.545546 1_4:-67548823 None:intergenic
TGAAGATGCTTAATCAAAGC+CGG 0.546672 1_4:-67543302 None:intergenic
GAGAAGTGCCGCACGTTCGT+CGG 0.547594 1_4:-67543048 None:intergenic
TCGGATTTCATTAGGGTAGG+TGG 0.548232 1_4:+67548021 Msa0179840:CDS
GGTGAAGAAGAGTGTGGTGT+TGG 0.550186 1_4:-67542896 None:intergenic
GTTATTTCTTGTGTTGTACC+AGG 0.550400 1_4:+67551441 Msa0179840:three_prime_UTR
AACCAGTTATTGGATTACTT+AGG 0.550875 1_4:+67545911 Msa0179840:CDS
TCACAAACAATTAAACTGCT+GGG 0.551171 1_4:+67551729 Msa0179840:three_prime_UTR
ACTGCTGGGTAATTTAGGCC+AGG 0.553069 1_4:+67551743 Msa0179840:three_prime_UTR
TACTATACTCGTACGGCCCA+AGG 0.554502 1_4:+67551817 Msa0179840:three_prime_UTR
CACTGCAGATTACAGTCTAT+GGG 0.555635 1_4:-67551372 None:intergenic
TCCAGCAAATGAACAAGTGG+TGG 0.556965 1_4:-67545479 None:intergenic
CGCAGCATTAGAATCAGAGT+CGG 0.557692 1_4:-67545677 None:intergenic
CATTGTGTGCAATACCAGCT+TGG 0.557922 1_4:-67547088 None:intergenic
AAGGTGCAAAGAGCAGCTGC+TGG 0.559222 1_4:+67545515 Msa0179840:CDS
TTTACCATTCTTAGCGAGAT+CGG 0.561235 1_4:-67543165 None:intergenic
GAGCTTTAACAAAGTAATTG+CGG 0.561626 1_4:-67551334 None:intergenic
TTCCCCACAGGATAATGTGT+CGG 0.562985 1_4:+67548002 Msa0179840:intron
AATGATGCTAGAGACAGAAA+GGG 0.564027 1_4:-67551577 None:intergenic
GCTGGAATTTGCTGATACAA+AGG 0.566935 1_4:+67545496 Msa0179840:CDS
AGATTAGAGGAGAAGATTCA+CGG 0.568629 1_4:+67548307 Msa0179840:CDS
AAGAAGAGTGTGGTGTTGGT+TGG 0.575072 1_4:-67542892 None:intergenic
GGAAGTGGTGAATGTGATTG+TGG 0.575329 1_4:+67543265 Msa0179840:CDS
CTTATGCGAGTTTCAGAAAG+GGG 0.578222 1_4:+67548495 Msa0179840:CDS
AAGAAGGGTGAAGAAGAGTG+TGG 0.578694 1_4:-67542902 None:intergenic
TGAATGGATCACAGAACTGG+AGG 0.580296 1_4:-67542798 None:intergenic
TGAACCTACCTGTGGTGTTG+GGG 0.580706 1_4:-67548835 None:intergenic
CCTACCTGTGGTGTTGGGGA+AGG 0.581207 1_4:-67548831 None:intergenic
ATCATACCTCATTCTCTGCA+AGG 0.581209 1_4:-67547190 None:intergenic
ATGAGTAGCACGCTTAGCCG+CGG 0.581562 1_4:-67543135 None:intergenic
GCCGCACGTTCGTCGGCGGT+AGG 0.583158 1_4:-67543041 None:intergenic
CACGCTGCCCTGAAAGTCAG+AGG 0.583183 1_4:+67546119 Msa0179840:CDS
CTTGTGTTGTACCAGGAAGG+GGG 0.585650 1_4:+67551448 Msa0179840:three_prime_UTR
AGTAGAGAGGAAGAATAAGA+GGG 0.586698 1_4:+67551980 Msa0179840:three_prime_UTR
AGAGATCCCAAATATTAGAT+GGG 0.587179 1_4:+67550286 Msa0179840:CDS
CAAGTTGGCCAATAAAGCCT+CGG 0.587308 1_4:+67548782 Msa0179840:CDS
CTCGCATAAGATATAACAGA+TGG 0.587389 1_4:-67548482 None:intergenic
ATTAGGACTTCTCGCAGTCA+AGG 0.590051 1_4:+67543400 Msa0179840:CDS
TGCTGCTATTCATTATGAAG+CGG 0.591200 1_4:+67545709 Msa0179840:CDS
ACAGTTCCATGTCAGACGAC+AGG 0.591963 1_4:-67551775 None:intergenic
GACGAAAGCATCTCTATCAA+AGG 0.592011 1_4:-67546675 None:intergenic
GGAACATCAACAACTAATTG+TGG 0.592529 1_4:+67545211 Msa0179840:CDS
ACTTCATGCTCAAACGGCAA+CGG 0.593141 1_4:-67543356 None:intergenic
AGCTACTGATTCAGACTGCA+AGG 0.598009 1_4:+67546171 Msa0179840:CDS
GTCTACAGGAGACAGGGCCG+AGG 0.599726 1_4:-67548799 None:intergenic
AAAGGTGTACCATAGGTCTA+CGG 0.599871 1_4:+67551900 Msa0179840:three_prime_UTR
AAGTGCCGCACGTTCGTCGG+CGG 0.602387 1_4:-67543045 None:intergenic
GTGTCGGATTTCATTAGGGT+AGG 0.603157 1_4:+67548018 Msa0179840:CDS
GACGACAGGAATTAACGGCC+TGG 0.604652 1_4:-67551761 None:intergenic
GGCCAATCTCCCCAATGCAA+AGG 0.606240 1_4:-67546727 None:intergenic
TGAAATGCGTAGAGAAAAGG+AGG 0.606366 1_4:+67551937 Msa0179840:three_prime_UTR
CAGGACACACATAACCAAGC+TGG 0.608709 1_4:+67547074 Msa0179840:intron
ATGGAGTTTCAGAGACGCCA+AGG 0.609263 1_4:+67542936 Msa0179840:CDS
GCCTACCGCCGACGAACGTG+CGG 0.610300 1_4:+67543040 Msa0179840:CDS
CATGACAGGAGAAGGATGCA+AGG 0.611719 1_4:+67550258 Msa0179840:intron
CATTAATAGTCTCATTCGTA+GGG 0.616601 1_4:+67545301 Msa0179840:CDS
ACTTTCTGCACCCAGTAGAG+AGG 0.617802 1_4:+67551967 Msa0179840:three_prime_UTR
TAGCAAATACTATACTCGTA+CGG 0.618303 1_4:+67551810 Msa0179840:three_prime_UTR
CTGTGAGTACACAATTGCAC+AGG 0.621930 1_4:+67550524 Msa0179840:CDS
GAGTCAAGAAGCTTGAGCAG+TGG 0.623089 1_4:-67547122 None:intergenic
AAATGTCTGCCTTTGCATTG+GGG 0.623106 1_4:+67546718 Msa0179840:CDS
AATTCCAGCAAATGAACAAG+TGG 0.624346 1_4:-67545482 None:intergenic
GCTGGTATTGCACACAATGG+TGG 0.625726 1_4:+67547092 Msa0179840:CDS
ACGCTGCCCTGAAAGTCAGA+GGG 0.634516 1_4:+67546120 Msa0179840:CDS
GTGGTGAATGTGATTGTGGA+AGG 0.635578 1_4:+67543269 Msa0179840:CDS
TTTCGTGCAATGTTTGATGG+TGG 0.641730 1_4:+67549876 Msa0179840:CDS
GGAGTTCAAAGACTACAAGA+AGG 0.642933 1_4:+67548042 Msa0179840:CDS
CCATGAACGAGAGAGAAGAA+GGG 0.644551 1_4:-67542917 None:intergenic
GCGGTGCCGACGAGATCTGA+CGG 0.644725 1_4:-67543019 None:intergenic
CTATGGTTAACAGAATGGAA+TGG 0.644888 1_4:-67542867 None:intergenic
ACAGCAACTTGATGGTGCTG+TGG 0.647244 1_4:+67548752 Msa0179840:CDS
AAAGCATCTCTATCAAAGGT+CGG 0.649168 1_4:-67546671 None:intergenic
ATGACAGGAGAAGGATGCAA+GGG 0.650751 1_4:+67550259 Msa0179840:intron
TTTGCCCCTTCCTCTCGGAG+AGG 0.654825 1_4:-67542965 None:intergenic
GAATGAAGACGATCGAGCCG+CGG 0.657533 1_4:+67543118 Msa0179840:CDS
TTCTCGAGTCTACTTTCACG+TGG 0.661326 1_4:+67543096 Msa0179840:CDS
GTGAATGTGATTGTGGAAGG+AGG 0.669059 1_4:+67543272 Msa0179840:CDS
ATGAGAGGCAAACCTGACAT+GGG 0.671038 1_4:-67545372 None:intergenic
TAGGTTCACATTGTACAGAG+AGG 0.672210 1_4:+67546642 Msa0179840:intron
AAGGTCACTGCCTCTCCGAG+AGG 0.690613 1_4:+67542955 Msa0179840:CDS
AGCGGCGTCTACAGGAGACA+GGG 0.692565 1_4:-67548805 None:intergenic
ACTTTGATAAGTTGAGCGCG+AGG 0.693850 1_4:+67550768 Msa0179840:CDS
GCCTCTTTAAAAGATCAACA+AGG 0.700661 1_4:-67545253 None:intergenic
CAAGCTGGTATTGCACACAA+TGG 0.700835 1_4:+67547089 Msa0179840:CDS
ATGATGCTAGAGACAGAAAG+GGG 0.701274 1_4:-67551576 None:intergenic
GGAAGACCGTCAGATCTCGT+CGG 0.712275 1_4:+67543013 Msa0179840:CDS
GTAGAGAGGAAGAATAAGAG+GGG 0.716782 1_4:+67551981 Msa0179840:three_prime_UTR
CAACAACTAATTGTGGACAG+TGG 0.718009 1_4:+67545218 Msa0179840:CDS
TGAACGCAATCAGTAACAGG+CGG 0.719381 1_4:-67543329 None:intergenic
CGTGAAAGTAGACTCGAGAA+CGG 0.732007 1_4:-67543093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATTTTATAAAATTAATT+TGG + chr1_4:67544064-67544083 Msa0179840:intron 10.0%
!! ATAGGTTTAAATAATAAATT+GGG + chr1_4:67544872-67544891 Msa0179840:intron 10.0%
!!! CAATTATATCTTTTTTTAAA+GGG - chr1_4:67545154-67545173 None:intergenic 10.0%
!!! ACAATTATATCTTTTTTTAA+AGG - chr1_4:67545155-67545174 None:intergenic 10.0%
!!! TTTTTTTTCTTAACATTATA+TGG + chr1_4:67545427-67545446 Msa0179840:intron 10.0%
!! TCAAATTTAATAAAAAAGAA+AGG + chr1_4:67548898-67548917 Msa0179840:intron 10.0%
!! CAAATTTAATAAAAAAGAAA+GGG + chr1_4:67548899-67548918 Msa0179840:intron 10.0%
!! AAATTTAATAAAAAAGAAAG+GGG + chr1_4:67548900-67548919 Msa0179840:intron 10.0%
!!! TATTTAAGTTTTTCTAATAT+TGG + chr1_4:67549237-67549256 Msa0179840:intron 10.0%
!!! TTTTATTTTTCCTATTAAAC+AGG + chr1_4:67543798-67543817 Msa0179840:intron 15.0%
!! CATAGGTTTAAATAATAAAT+TGG + chr1_4:67544871-67544890 Msa0179840:intron 15.0%
!! CATATATATAATACAAAGTA+TGG - chr1_4:67545097-67545116 None:intergenic 15.0%
!! CATACTTTGTATTATATATA+TGG + chr1_4:67545095-67545114 Msa0179840:intron 15.0%
!! AAATGATGAAAATAAAATTC+AGG + chr1_4:67545562-67545581 Msa0179840:CDS 15.0%
!!! AAACTGTAATGATAAATTTT+AGG + chr1_4:67545743-67545762 Msa0179840:intron 15.0%
!! ATATAAACAAATTCAAGATA+CGG - chr1_4:67546002-67546021 None:intergenic 15.0%
!!! TTGTTTTATTCAACAAAAAA+AGG - chr1_4:67546428-67546447 None:intergenic 15.0%
!! TATACAATGTTTACATTTAT+AGG + chr1_4:67546988-67547007 Msa0179840:intron 15.0%
!! GAAAAAAAAAATATCAATCA+TGG - chr1_4:67547048-67547067 None:intergenic 15.0%
!!! TATTTTTTTTTTCCAATTTC+AGG + chr1_4:67547055-67547074 Msa0179840:intron 15.0%
!! AAAAGGATTGATATAAAAAA+AGG - chr1_4:67549021-67549040 None:intergenic 15.0%
!! TATCTTATTGTTTATTTGAT+CGG + chr1_4:67550398-67550417 Msa0179840:intron 15.0%
!!! TTTTTTTTTCTAGTTCTTTT+TGG + chr1_4:67550955-67550974 Msa0179840:intron 15.0%
!!! TTTTTTTTCTAGTTCTTTTT+GGG + chr1_4:67550956-67550975 Msa0179840:intron 15.0%
!! AAATCATATGATATTTAGAA+TGG + chr1_4:67551223-67551242 Msa0179840:intron 15.0%
!! TCATAGATATAGTAAATATA+CGG + chr1_4:67551604-67551623 Msa0179840:three_prime_UTR 15.0%
!! TTATCAAATTTGTATGATTC+TGG + chr1_4:67543445-67543464 Msa0179840:intron 20.0%
!! ATAGGAAAAATAAAACAGAA+CGG - chr1_4:67543793-67543812 None:intergenic 20.0%
!! AAAATAGGTAATTTCAGTAT+GGG - chr1_4:67544181-67544200 None:intergenic 20.0%
!! AAAAATAGGTAATTTCAGTA+TGG - chr1_4:67544182-67544201 None:intergenic 20.0%
!! TATTTCATTATGACTGTATA+TGG - chr1_4:67544366-67544385 None:intergenic 20.0%
!!! TTCTCTGAAAAAAAACATAT+CGG + chr1_4:67544614-67544633 Msa0179840:intron 20.0%
!! GAAATACTAAGAAAAATTCA+TGG + chr1_4:67544753-67544772 Msa0179840:intron 20.0%
!!! TTATATCTTTTTTTAAAGGG+CGG - chr1_4:67545151-67545170 None:intergenic 20.0%
!! TATAAACAAATTCAAGATAC+GGG - chr1_4:67546001-67546020 None:intergenic 20.0%
!! TGTCAAGAAACAAAAAAATT+GGG - chr1_4:67546026-67546045 None:intergenic 20.0%
!! TTGTCAAGAAACAAAAAAAT+TGG - chr1_4:67546027-67546046 None:intergenic 20.0%
!! TAAAACAACTGAACATTAAT+TGG + chr1_4:67546440-67546459 Msa0179840:intron 20.0%
!! AAAACAACTGAACATTAATT+GGG + chr1_4:67546441-67546460 Msa0179840:intron 20.0%
!!! TCTAGAATAGTTGATTATAT+AGG + chr1_4:67546542-67546561 Msa0179840:intron 20.0%
!! GAAAAAAAAAACAATAACCT+GGG - chr1_4:67546751-67546770 None:intergenic 20.0%
!! AGAAAAAAAAAACAATAACC+TGG - chr1_4:67546752-67546771 None:intergenic 20.0%
!! ACACAATTGAATTATAAACA+AGG - chr1_4:67546776-67546795 None:intergenic 20.0%
!! TATAATTCAATTGTGTAAGT+TGG + chr1_4:67546780-67546799 Msa0179840:intron 20.0%
!! ATAATTCAATTGTGTAAGTT+GGG + chr1_4:67546781-67546800 Msa0179840:intron 20.0%
!! GCAAATCTAAAAATCTATTA+CGG - chr1_4:67546858-67546877 None:intergenic 20.0%
!! TGTCTTGTGATATATTATTA+TGG - chr1_4:67547316-67547335 None:intergenic 20.0%
!! CCATTATTTAAATTTAAGAG+TGG - chr1_4:67547937-67547956 None:intergenic 20.0%
!! CCACTCTTAAATTTAAATAA+TGG + chr1_4:67547934-67547953 Msa0179840:intron 20.0%
!! GGGAAAAATAAAACAAAAAA+GGG - chr1_4:67547987-67548006 None:intergenic 20.0%
!! GAAATATAACAAATACAAGA+AGG - chr1_4:67548665-67548684 None:intergenic 20.0%
!!! TTTCCTTTTGATTTTAACAT+AGG + chr1_4:67548983-67549002 Msa0179840:intron 20.0%
!! TTTCCTATGTTAAAATCAAA+AGG - chr1_4:67548989-67549008 None:intergenic 20.0%
!!! ATATCAATCCTTTTTAGAAA+AGG + chr1_4:67549027-67549046 Msa0179840:intron 20.0%
!!! TATCAATCCTTTTTAGAAAA+GGG + chr1_4:67549028-67549047 Msa0179840:intron 20.0%
!! TTATAAACTATTCTTCTTAC+AGG + chr1_4:67549611-67549630 Msa0179840:intron 20.0%
!! ATATATCTGTCTTTGTAAAA+TGG + chr1_4:67550616-67550635 Msa0179840:intron 20.0%
!! TATATCTGTCTTTGTAAAAT+GGG + chr1_4:67550617-67550636 Msa0179840:intron 20.0%
!! TTTATACTGAACTAATAACT+TGG + chr1_4:67550836-67550855 Msa0179840:intron 20.0%
!! TAAGAAAAAACAATTTGTGA+AGG - chr1_4:67551630-67551649 None:intergenic 20.0%
! ATTGGAAATGAAGATTTGAA+TGG - chr1_4:67542817-67542836 None:intergenic 25.0%
! AGAGAAAATCAGATAGAAAA+TGG - chr1_4:67542845-67542864 None:intergenic 25.0%
! TAGAAATGAGAAAAAGAAGT+TGG + chr1_4:67543596-67543615 Msa0179840:intron 25.0%
! TTAGTATAAGAGTTTAGCTA+AGG + chr1_4:67543749-67543768 Msa0179840:intron 25.0%
! TTACAACAAACAAACTTTCA+GGG - chr1_4:67544136-67544155 None:intergenic 25.0%
! TTTACAACAAACAAACTTTC+AGG - chr1_4:67544137-67544156 None:intergenic 25.0%
!!! AGTTTGTTTGTTGTAAACTT+TGG + chr1_4:67544140-67544159 Msa0179840:intron 25.0%
! AAATAGGTAATTTCAGTATG+GGG - chr1_4:67544180-67544199 None:intergenic 25.0%
! TTGAGTAGAAGTGAAAAAAT+AGG - chr1_4:67544196-67544215 None:intergenic 25.0%
! AAAATAGGTACTATCAGAAA+AGG - chr1_4:67544247-67544266 None:intergenic 25.0%
! GATGTGATTTCAGTTAAAAT+AGG - chr1_4:67544262-67544281 None:intergenic 25.0%
!! TCTCTGAAAAAAAACATATC+GGG + chr1_4:67544615-67544634 Msa0179840:intron 25.0%
! AAAAAAAACATATCGGGTTT+GGG + chr1_4:67544621-67544640 Msa0179840:intron 25.0%
! TGTTAGAAAAAAAGAAGTGA+TGG + chr1_4:67544650-67544669 Msa0179840:intron 25.0%
! GTTAGAAAAAAAGAAGTGAT+GGG + chr1_4:67544651-67544670 Msa0179840:intron 25.0%
! TTAGAAAAAAAGAAGTGATG+GGG + chr1_4:67544652-67544671 Msa0179840:intron 25.0%
!! GAAAAAATCAAACGAGTTTT+TGG + chr1_4:67544790-67544809 Msa0179840:intron 25.0%
! AGAATTTACTATCTCGTAAT+TGG - chr1_4:67544820-67544839 None:intergenic 25.0%
! GGTTTAAATAATAAATTGGG+TGG + chr1_4:67544875-67544894 Msa0179840:intron 25.0%
! GCTAAAATCAATCATGTAAT+TGG - chr1_4:67544981-67545000 None:intergenic 25.0%
!!! CTTTTAAAGAGGCATAATAA+TGG + chr1_4:67545263-67545282 Msa0179840:CDS 25.0%
!! ATTATATGGATTTTCTGTGT+AGG + chr1_4:67545441-67545460 Msa0179840:intron 25.0%
! GATGAAAATAAAATTCAGGT+AGG + chr1_4:67545566-67545585 Msa0179840:intron 25.0%
! AATGAATTGGATTGTATTAC+AGG + chr1_4:67545816-67545835 Msa0179840:intron 25.0%
! AGAACCTCTTTCTTTATATT+CGG - chr1_4:67545874-67545893 None:intergenic 25.0%
! ATAAACAAATTCAAGATACG+GGG - chr1_4:67546000-67546019 None:intergenic 25.0%
!!! TATTTTTGTACTTGTACTTG+AGG + chr1_4:67546303-67546322 Msa0179840:intron 25.0%
!! ATTTTTGTACTTGTACTTGA+GGG + chr1_4:67546304-67546323 Msa0179840:intron 25.0%
! AAACAACTGAACATTAATTG+GGG + chr1_4:67546442-67546461 Msa0179840:intron 25.0%
! TAATACAAAACAACCAAACA+TGG - chr1_4:67546491-67546510 None:intergenic 25.0%
! ATCTAAAAATCTATTACGGA+AGG - chr1_4:67546854-67546873 None:intergenic 25.0%
! AAAATATCAATCATGGCAAA+GGG - chr1_4:67547041-67547060 None:intergenic 25.0%
! AAAAATATCAATCATGGCAA+AGG - chr1_4:67547042-67547061 None:intergenic 25.0%
!! CCAAAACATTTAAGATTTAG+AGG - chr1_4:67547360-67547379 None:intergenic 25.0%
!! CCTCTAAATCTTAAATGTTT+TGG + chr1_4:67547357-67547376 Msa0179840:intron 25.0%
!!! GTTTTGGAATTTTGCTTTTT+TGG + chr1_4:67547373-67547392 Msa0179840:intron 25.0%
! AAATACTAGACATAAGGATT+GGG - chr1_4:67547700-67547719 None:intergenic 25.0%
!! TAAATCATTTTATCCAAGCA+GGG - chr1_4:67547909-67547928 None:intergenic 25.0%
! GGGGAAAAATAAAACAAAAA+AGG - chr1_4:67547988-67548007 None:intergenic 25.0%
! ATGTGAATAGTTATAGCATT+AGG + chr1_4:67548182-67548201 Msa0179840:intron 25.0%
! TGTGAATAGTTATAGCATTA+GGG + chr1_4:67548183-67548202 Msa0179840:intron 25.0%
! GTGGAAAAATAGATTCTTAT+TGG + chr1_4:67548213-67548232 Msa0179840:intron 25.0%
! TATATCAACTATCAGTTCTA+TGG + chr1_4:67548407-67548426 Msa0179840:intron 25.0%
! ATATCAACTATCAGTTCTAT+GGG + chr1_4:67548408-67548427 Msa0179840:intron 25.0%
! ACCTATAAGAAGAAAATTGA+CGG - chr1_4:67548456-67548475 None:intergenic 25.0%
!! AGAATTTTTATTGAACACCA+TGG + chr1_4:67548576-67548595 Msa0179840:CDS 25.0%
! ATCTTCGTAAAATACTTTCA+TGG + chr1_4:67548606-67548625 Msa0179840:intron 25.0%
! TCTTCGTAAAATACTTTCAT+GGG + chr1_4:67548607-67548626 Msa0179840:intron 25.0%
!!! ATCAATCCTTTTTAGAAAAG+GGG + chr1_4:67549029-67549048 Msa0179840:intron 25.0%
! TATACAAAATGTGTGTTGAA+AGG - chr1_4:67549184-67549203 None:intergenic 25.0%
! AAGTACATAAAACAAATGGT+AGG - chr1_4:67549214-67549233 None:intergenic 25.0%
!!! ACCATTTGTTTTATGTACTT+TGG + chr1_4:67549214-67549233 Msa0179840:intron 25.0%
! ACCAAAGTACATAAAACAAA+TGG - chr1_4:67549218-67549237 None:intergenic 25.0%
! GATGTCTAGCTAAAAATATA+TGG + chr1_4:67549386-67549405 Msa0179840:intron 25.0%
!!! ATCAGATGCTCATTTTTAAA+TGG - chr1_4:67549413-67549432 None:intergenic 25.0%
! ATTTAAAAATGAGCATCTGA+TGG + chr1_4:67549412-67549431 Msa0179840:intron 25.0%
!!! AATAATGTCTGGTTTTTGTT+TGG - chr1_4:67549463-67549482 None:intergenic 25.0%
!! AAGACATTGATAATAATGTC+TGG - chr1_4:67549474-67549493 None:intergenic 25.0%
! TTCAACCAAAAATGTAACAT+CGG - chr1_4:67549676-67549695 None:intergenic 25.0%
! AACAAAGAAAAGAGATTAAC+CGG - chr1_4:67549802-67549821 None:intergenic 25.0%
!!! GGAAAAATATAATTTGGTGT+GGG - chr1_4:67549927-67549946 None:intergenic 25.0%
!! CAATAATGGTTTTCTTCTTT+TGG - chr1_4:67550028-67550047 None:intergenic 25.0%
! AAAACACGTTAAGTCAATAA+TGG - chr1_4:67550042-67550061 None:intergenic 25.0%
! AAACTTCCCATCTAATATTT+GGG - chr1_4:67550295-67550314 None:intergenic 25.0%
! AAAACTTCCCATCTAATATT+TGG - chr1_4:67550296-67550315 None:intergenic 25.0%
! TGATCCAGTATATATAAATC+TGG - chr1_4:67550427-67550446 None:intergenic 25.0%
! CATTAGAATATAAACTACCA+AGG - chr1_4:67550911-67550930 None:intergenic 25.0%
! AGAAAAAAAAAATCAGTGCA+CGG - chr1_4:67550946-67550965 None:intergenic 25.0%
! TTTAGACAAAGTTCATTCAA+AGG + chr1_4:67551081-67551100 Msa0179840:intron 25.0%
! TTAGACAAAGTTCATTCAAA+GGG + chr1_4:67551082-67551101 Msa0179840:intron 25.0%
! TTTCTTATGCAATATTGTGA+TGG + chr1_4:67551643-67551662 Msa0179840:three_prime_UTR 25.0%
! AACAATTATCATATGAGGAA+TGG - chr1_4:67551671-67551690 None:intergenic 25.0%
! ACGTTAACAATTATCATATG+AGG - chr1_4:67551676-67551695 None:intergenic 25.0%
TAAGTTAGACGAAGAATTAC+CGG + chr1_4:67542992-67543011 Msa0179840:CDS 30.0%
TACAGTATGTCCTGTTTAAT+AGG - chr1_4:67543811-67543830 None:intergenic 30.0%
ACTGTATTGAATGATCTATG+TGG + chr1_4:67543825-67543844 Msa0179840:intron 30.0%
!! GAATTTTGAGTGTGTCATAT+TGG + chr1_4:67543847-67543866 Msa0179840:intron 30.0%
TCTTGAATACAACATAACTG+TGG - chr1_4:67543892-67543911 None:intergenic 30.0%
ACAGTTATGTTGTATTCAAG+AGG + chr1_4:67543891-67543910 Msa0179840:intron 30.0%
CAGTTATGTTGTATTCAAGA+GGG + chr1_4:67543892-67543911 Msa0179840:intron 30.0%
AGATCACTAATGCATTTACT+TGG + chr1_4:67544017-67544036 Msa0179840:intron 30.0%
GATCACTAATGCATTTACTT+GGG + chr1_4:67544018-67544037 Msa0179840:intron 30.0%
TACAACAAACAAACTTTCAG+GGG - chr1_4:67544135-67544154 None:intergenic 30.0%
TACAGTCATAATGAAATACG+AGG + chr1_4:67544368-67544387 Msa0179840:intron 30.0%
! GTTATTCGTGATAATGCATA+TGG + chr1_4:67544426-67544445 Msa0179840:intron 30.0%
! CTTATGGAATTGATTCACAA+AGG - chr1_4:67544456-67544475 None:intergenic 30.0%
! ATTTTTCTCTATGCTGTACA+AGG + chr1_4:67544574-67544593 Msa0179840:intron 30.0%
GAAAAAAAACATATCGGGTT+TGG + chr1_4:67544620-67544639 Msa0179840:intron 30.0%
TAGAAAAAAAGAAGTGATGG+GGG + chr1_4:67544653-67544672 Msa0179840:intron 30.0%
TTAAAGTGAATGTCTCTCAT+AGG + chr1_4:67544854-67544873 Msa0179840:intron 30.0%
AAATAATAAATTGGGTGGTC+TGG + chr1_4:67544880-67544899 Msa0179840:intron 30.0%
!!! TACATGATTGATTTTAGCTC+TGG + chr1_4:67544983-67545002 Msa0179840:intron 30.0%
GTTAGCAAGTGAATTGATAA+AGG - chr1_4:67545041-67545060 None:intergenic 30.0%
ACAATTAGTTGTTGATGTTC+CGG - chr1_4:67545212-67545231 None:intergenic 30.0%
!! ACCTTGTTGATCTTTTAAAG+AGG + chr1_4:67545252-67545271 Msa0179840:CDS 30.0%
CATTAATAGTCTCATTCGTA+GGG + chr1_4:67545301-67545320 Msa0179840:CDS 30.0%
CACGATTGTATATTTAGACT+CGG + chr1_4:67545396-67545415 Msa0179840:intron 30.0%
GAAAATAAAATTCAGGTAGG+CGG + chr1_4:67545569-67545588 Msa0179840:intron 30.0%
AATTGGATTGTATTACAGGT+TGG + chr1_4:67545820-67545839 Msa0179840:intron 30.0%
ATCTCCGAATATAAAGAAAG+AGG + chr1_4:67545867-67545886 Msa0179840:CDS 30.0%
AACCAGTTATTGGATTACTT+AGG + chr1_4:67545911-67545930 Msa0179840:CDS 30.0%
TACCTAAGTAATCCAATAAC+TGG - chr1_4:67545916-67545935 None:intergenic 30.0%
!!! GATCGTGGAAAATTTTAGTT+AGG + chr1_4:67546220-67546239 Msa0179840:intron 30.0%
! TTTTTGTACTTGTACTTGAG+GGG + chr1_4:67546305-67546324 Msa0179840:intron 30.0%
TCTTGAATAGTTAAGAGAGA+TGG + chr1_4:67546380-67546399 Msa0179840:intron 30.0%
AACAACTGAACATTAATTGG+GGG + chr1_4:67546443-67546462 Msa0179840:intron 30.0%
CTTGCTAAAATAACAACTCA+TGG + chr1_4:67546518-67546537 Msa0179840:intron 30.0%
ATTTCTCTAAGTTGTACATC+AGG - chr1_4:67546702-67546721 None:intergenic 30.0%
!! GTAATTCTCTTTGAGATTCA+TGG + chr1_4:67546807-67546826 Msa0179840:intron 30.0%
TACATCAATTAACGAGAAGA+TGG - chr1_4:67546899-67546918 None:intergenic 30.0%
TCGTTAATTGATGTATCTTG+TGG + chr1_4:67546904-67546923 Msa0179840:intron 30.0%
CGTTAATTGATGTATCTTGT+GGG + chr1_4:67546905-67546924 Msa0179840:intron 30.0%
CTAAGATGAGTTATGTTCTT+AGG - chr1_4:67546937-67546956 None:intergenic 30.0%
AAATATCAATCATGGCAAAG+GGG - chr1_4:67547040-67547059 None:intergenic 30.0%
AAGCTTCTTGACTCAAAAAA+TGG + chr1_4:67547131-67547150 Msa0179840:CDS 30.0%
AGCTTCTTGACTCAAAAAAT+GGG + chr1_4:67547132-67547151 Msa0179840:CDS 30.0%
AGATTTAGAGGTCAATCATT+TGG - chr1_4:67547348-67547367 None:intergenic 30.0%
ATAAACACAAAAAAGCCGTT+CGG - chr1_4:67547427-67547446 None:intergenic 30.0%
! TTTTGTGTTTATAAGCCCTT+CGG + chr1_4:67547435-67547454 Msa0179840:intron 30.0%
AAAGCCTATAAAACAACGTT+CGG - chr1_4:67547471-67547490 None:intergenic 30.0%
!! AACATTGATGACTACTCTTT+TGG - chr1_4:67547512-67547531 None:intergenic 30.0%
GTTCTTCAGATTCAATAGAA+AGG - chr1_4:67547603-67547622 None:intergenic 30.0%
AATAACATTTGAGAGAGAGT+TGG - chr1_4:67547674-67547693 None:intergenic 30.0%
GAAATACTAGACATAAGGAT+TGG - chr1_4:67547701-67547720 None:intergenic 30.0%
ACTGACAATGTTGTATGATA+CGG - chr1_4:67547798-67547817 None:intergenic 30.0%
! GTAAATCATTTTATCCAAGC+AGG - chr1_4:67547910-67547929 None:intergenic 30.0%
!!! TTTGTTTTATTTTTCCCCAC+AGG + chr1_4:67547990-67548009 Msa0179840:intron 30.0%
ATAATGTGTCGGATTTCATT+AGG + chr1_4:67548013-67548032 Msa0179840:CDS 30.0%
TAATGTGTCGGATTTCATTA+GGG + chr1_4:67548014-67548033 Msa0179840:CDS 30.0%
CTGAAATAAGTGCTAAAACT+AGG - chr1_4:67548102-67548121 None:intergenic 30.0%
!!! CTAGTTTTAGCACTTATTTC+AGG + chr1_4:67548100-67548119 Msa0179840:intron 30.0%
!!! ATTCTAGTTCCCTTTTATAC+AGG - chr1_4:67548149-67548168 None:intergenic 30.0%
TATATTGACCTATGTGGATA+TGG + chr1_4:67548239-67548258 Msa0179840:intron 30.0%
AATAGAAACCATATCCACAT+AGG - chr1_4:67548250-67548269 None:intergenic 30.0%
! CTCTAATCTTTTCAATGTCT+TGG - chr1_4:67548296-67548315 None:intergenic 30.0%
CAAGACATTGAAAAGATTAG+AGG + chr1_4:67548294-67548313 Msa0179840:CDS 30.0%
! TCCGTCAATTTTCTTCTTAT+AGG + chr1_4:67548452-67548471 Msa0179840:intron 30.0%
ATTTGAACAGAAAGATTGTG+AGG - chr1_4:67548884-67548903 None:intergenic 30.0%
TTTATGATGTGAATAGGCAT+CGG + chr1_4:67548925-67548944 Msa0179840:intron 30.0%
!! TAAAGACCCCTTTTCTAAAA+AGG - chr1_4:67549038-67549057 None:intergenic 30.0%
!!! AGGAAAATGTTGTTTCCTTT+TGG + chr1_4:67549003-67549022 Msa0179840:intron 30.0%
!! AAAGGGTTGATATAACCAAA+AGG - chr1_4:67549147-67549166 None:intergenic 30.0%
TTTGGTAGAATAATAACGTC+TGG - chr1_4:67549445-67549464 None:intergenic 30.0%
TCGCTTTGTCTAAGTAATTA+TGG + chr1_4:67549554-67549573 Msa0179840:intron 30.0%
TTCTTCTTACAGGTTTACTT+AGG + chr1_4:67549621-67549640 Msa0179840:intron 30.0%
! ATTGTCCGATGTTACATTTT+TGG + chr1_4:67549668-67549687 Msa0179840:CDS 30.0%
!!! GATGTTACATTTTTGGTTGA+AGG + chr1_4:67549675-67549694 Msa0179840:CDS 30.0%
!!! GTTTTAAGAACGAAACAATG+TGG - chr1_4:67549717-67549736 None:intergenic 30.0%
!! TACCATATTTTAAGAGAAGG+TGG - chr1_4:67549750-67549769 None:intergenic 30.0%
!! CAGTACCATATTTTAAGAGA+AGG - chr1_4:67549753-67549772 None:intergenic 30.0%
! TAATCTCTTTTCTTTGTTGC+AGG + chr1_4:67549804-67549823 Msa0179840:intron 30.0%
!! AATGTTTGATGGTGGTTATA+GGG + chr1_4:67549884-67549903 Msa0179840:CDS 30.0%
! GGGAAAAATATAATTTGGTG+TGG - chr1_4:67549928-67549947 None:intergenic 30.0%
GGGAAGGGAAAAATATAATT+TGG - chr1_4:67549933-67549952 None:intergenic 30.0%
! TTGCAGTATGCTTATTTCTT+GGG - chr1_4:67549968-67549987 None:intergenic 30.0%
! TTTTATTGCATTTGCATGAC+AGG + chr1_4:67550244-67550263 Msa0179840:intron 30.0%
TAGAGATCCCAAATATTAGA+TGG + chr1_4:67550285-67550304 Msa0179840:CDS 30.0%
AGAGATCCCAAATATTAGAT+GGG + chr1_4:67550286-67550305 Msa0179840:CDS 30.0%
!!! AAGTTTTTGAGTTGATGATG+AGG + chr1_4:67550309-67550328 Msa0179840:CDS 30.0%
! GCTGATCAATATCTTTTAGA+TGG + chr1_4:67550489-67550508 Msa0179840:CDS 30.0%
! TGCATGCATTCTTTTTATCT+TGG + chr1_4:67550742-67550761 Msa0179840:CDS 30.0%
AGAATATAAACTACCAAGGT+CGG - chr1_4:67550907-67550926 None:intergenic 30.0%
ATGTGTGCTCAATATATAGT+TGG + chr1_4:67550998-67551017 Msa0179840:intron 30.0%
CACGATATAATAAGTTGCTA+TGG - chr1_4:67551044-67551063 None:intergenic 30.0%
! GAGCTTTAACAAAGTAATTG+CGG - chr1_4:67551337-67551356 None:intergenic 30.0%
CTTTCTTTCTTTCTTTGATG+TGG + chr1_4:67551547-67551566 Msa0179840:three_prime_UTR 30.0%
TTCACAAACAATTAAACTGC+TGG + chr1_4:67551728-67551747 Msa0179840:three_prime_UTR 30.0%
TCACAAACAATTAAACTGCT+GGG + chr1_4:67551729-67551748 Msa0179840:three_prime_UTR 30.0%
ATTAAACTGCTGGGTAATTT+AGG + chr1_4:67551738-67551757 Msa0179840:three_prime_UTR 30.0%
TAGCAAATACTATACTCGTA+CGG + chr1_4:67551810-67551829 Msa0179840:three_prime_UTR 30.0%
! TGTATGCGCTTGTTAAAAAA+AGG + chr1_4:67551882-67551901 Msa0179840:three_prime_UTR 30.0%
! GTTAAAAAAAGGTGTACCAT+AGG + chr1_4:67551893-67551912 Msa0179840:three_prime_UTR 30.0%
AAATGAAATGCGTAGAGAAA+AGG + chr1_4:67551934-67551953 Msa0179840:three_prime_UTR 30.0%
ATTTGAATGGATCACAGAAC+TGG - chr1_4:67542804-67542823 None:intergenic 35.0%
AGATAGAAAATGGCGAGAAT+TGG - chr1_4:67542835-67542854 None:intergenic 35.0%
CTATGGTTAACAGAATGGAA+TGG - chr1_4:67542870-67542889 None:intergenic 35.0%
TTTACCATTCTTAGCGAGAT+CGG - chr1_4:67543168-67543187 None:intergenic 35.0%
ATGTGTGTGTGTGAATTTAC+TGG + chr1_4:67543226-67543245 Msa0179840:intron 35.0%
TGAAGATGCTTAATCAAAGC+CGG - chr1_4:67543305-67543324 None:intergenic 35.0%
TTCTCAACTTCATGCTCAAA+CGG - chr1_4:67543365-67543384 None:intergenic 35.0%
TTTGAGCATGAAGTTGAGAA+AGG + chr1_4:67543365-67543384 Msa0179840:CDS 35.0%
TTGAGCATGAAGTTGAGAAA+GGG + chr1_4:67543366-67543385 Msa0179840:CDS 35.0%
AAGAAGTTGGCATATTAGAG+TGG + chr1_4:67543609-67543628 Msa0179840:intron 35.0%
AGAAGTTGGCATATTAGAGT+GGG + chr1_4:67543610-67543629 Msa0179840:intron 35.0%
TTATATCAACATCCACTGTC+AGG + chr1_4:67543932-67543951 Msa0179840:intron 35.0%
!! ATCTGTTTTGAATGTGCTGT+TGG + chr1_4:67543967-67543986 Msa0179840:intron 35.0%
TGTCATATTTCATTCCAGAG+AGG + chr1_4:67543992-67544011 Msa0179840:intron 35.0%
TTTCACTTCTACTCAAACAG+TGG + chr1_4:67544200-67544219 Msa0179840:intron 35.0%
! ATTTTTCTCAATGCCGAACA+AGG + chr1_4:67544527-67544546 Msa0179840:intron 35.0%
! AGAAAAAAAGAAGTGATGGG+GGG + chr1_4:67544654-67544673 Msa0179840:intron 35.0%
!!! ACTCGTTTGATTTTTTCGCT+TGG - chr1_4:67544787-67544806 None:intergenic 35.0%
AGTATGGTGAAAAAGTGACA+AGG - chr1_4:67545081-67545100 None:intergenic 35.0%
! TTTGAAATGCTTTCTACAGC+CGG + chr1_4:67545190-67545209 Msa0179840:intron 35.0%
GGAACATCAACAACTAATTG+TGG + chr1_4:67545211-67545230 Msa0179840:CDS 35.0%
AAGATCAACAAGGTGTGTTA+AGG - chr1_4:67545246-67545265 None:intergenic 35.0%
! GCCTCTTTAAAAGATCAACA+AGG - chr1_4:67545256-67545275 None:intergenic 35.0%
CCTACGAATGAGACTATTAA+TGG - chr1_4:67545303-67545322 None:intergenic 35.0%
CCATTAATAGTCTCATTCGT+AGG + chr1_4:67545300-67545319 Msa0179840:CDS 35.0%
AATATACAATCGTGCATGAG+AGG - chr1_4:67545390-67545409 None:intergenic 35.0%
! TATGGATTTTCTGTGTAGGA+TGG + chr1_4:67545445-67545464 Msa0179840:intron 35.0%
AATTCCAGCAAATGAACAAG+TGG - chr1_4:67545485-67545504 None:intergenic 35.0%
TGCTGCTATTCATTATGAAG+CGG + chr1_4:67545709-67545728 Msa0179840:CDS 35.0%
CTATTCATTATGAAGCGGTA+TGG + chr1_4:67545714-67545733 Msa0179840:intron 35.0%
ATTATGAAGCGGTATGGATA+AGG + chr1_4:67545720-67545739 Msa0179840:intron 35.0%
GTCTATATACATCTCTCATC+TGG + chr1_4:67545786-67545805 Msa0179840:intron 35.0%
ATCTGGCATATGCAATGAAT+TGG + chr1_4:67545803-67545822 Msa0179840:intron 35.0%
AAGAAAGAGGTTCTATTTGC+TGG + chr1_4:67545880-67545899 Msa0179840:CDS 35.0%
CTTAGGTATAATATCAGCTC+TGG + chr1_4:67545928-67545947 Msa0179840:intron 35.0%
AAGGGGAAATGCAATAGAAT+GGG - chr1_4:67545971-67545990 None:intergenic 35.0%
GTAAGGATAAACTTCACAAC+CGG + chr1_4:67546193-67546212 Msa0179840:intron 35.0%
CCAAACTTGAAAGTTTGACT+TGG - chr1_4:67546264-67546283 None:intergenic 35.0%
!! CCAAGTCAAACTTTCAAGTT+TGG + chr1_4:67546261-67546280 Msa0179840:intron 35.0%
!! AATCCCTCACTTCACTTTTA+TGG + chr1_4:67546352-67546371 Msa0179840:intron 35.0%
CAACCATAAAAGTGAAGTGA+GGG - chr1_4:67546358-67546377 None:intergenic 35.0%
ACAACCATAAAAGTGAAGTG+AGG - chr1_4:67546359-67546378 None:intergenic 35.0%
ACCAACTACAATTCCATGTT+TGG + chr1_4:67546475-67546494 Msa0179840:intron 35.0%
ACCAAACATGGAATTGTAGT+TGG - chr1_4:67546479-67546498 None:intergenic 35.0%
AATGTGAACCTAAACAAACC+AGG - chr1_4:67546634-67546653 None:intergenic 35.0%
! AAAGCATCTCTATCAAAGGT+CGG - chr1_4:67546674-67546693 None:intergenic 35.0%
ATCAATTAACGAGAAGATGG+AGG - chr1_4:67546896-67546915 None:intergenic 35.0%
!!! AATGCTGCTTTTGCTCTTTA+TGG + chr1_4:67547167-67547186 Msa0179840:CDS 35.0%
AACTGAAAATCCGAATGAAG+TGG + chr1_4:67547215-67547234 Msa0179840:intron 35.0%
TAAACACAAAAAAGCCGTTC+GGG - chr1_4:67547426-67547445 None:intergenic 35.0%
TTTGTGTTTATAAGCCCTTC+GGG + chr1_4:67547436-67547455 Msa0179840:intron 35.0%
AAGCCTATAAAACAACGTTC+GGG - chr1_4:67547470-67547489 None:intergenic 35.0%
! GTTTTGCCCATAGTTTTTCT+TGG + chr1_4:67547529-67547548 Msa0179840:intron 35.0%
GGAAAGCCAAGAAAAACTAT+GGG - chr1_4:67547538-67547557 None:intergenic 35.0%
AGGAAAGCCAAGAAAAACTA+TGG - chr1_4:67547539-67547558 None:intergenic 35.0%
AGAAAGGAGAGTAGATATGA+TGG - chr1_4:67547587-67547606 None:intergenic 35.0%
ATAGGTGGTTTAGAAATGTG+TGG - chr1_4:67547630-67547649 None:intergenic 35.0%
! ACCACCTATTTTCTACAAAC+AGG + chr1_4:67547641-67547660 Msa0179840:intron 35.0%
ACCTGTTTGTAGAAAATAGG+TGG - chr1_4:67547645-67547664 None:intergenic 35.0%
AGCACCTGTTTGTAGAAAAT+AGG - chr1_4:67547648-67547667 None:intergenic 35.0%
GAGTGGAAATACTAGACATA+AGG - chr1_4:67547706-67547725 None:intergenic 35.0%
GGAATAAACTCAACGTATCA+AGG - chr1_4:67547749-67547768 None:intergenic 35.0%
TGTTGTATGATACGGTTGAT+GGG - chr1_4:67547790-67547809 None:intergenic 35.0%
ATGTTGTATGATACGGTTGA+TGG - chr1_4:67547791-67547810 None:intergenic 35.0%
TCCTTGGATTCCTGTATAAA+AGG + chr1_4:67548136-67548155 Msa0179840:intron 35.0%
CCTTGGATTCCTGTATAAAA+GGG + chr1_4:67548137-67548156 Msa0179840:intron 35.0%
TGGACATATATTGACCTATG+TGG + chr1_4:67548233-67548252 Msa0179840:intron 35.0%
AGATTAGAGGAGAAGATTCA+CGG + chr1_4:67548307-67548326 Msa0179840:CDS 35.0%
CTCGCATAAGATATAACAGA+TGG - chr1_4:67548485-67548504 None:intergenic 35.0%
ATCTTATGCGAGTTTCAGAA+AGG + chr1_4:67548493-67548512 Msa0179840:CDS 35.0%
TCTTATGCGAGTTTCAGAAA+GGG + chr1_4:67548494-67548513 Msa0179840:CDS 35.0%
! TTTCAGAAAGGGGTTTTCAA+AGG + chr1_4:67548505-67548524 Msa0179840:CDS 35.0%
TTCTTCTTTGATCATCTGCA+GGG - chr1_4:67548560-67548579 None:intergenic 35.0%
ATTCTTCTTTGATCATCTGC+AGG - chr1_4:67548561-67548580 None:intergenic 35.0%
TTACGAAGATGCATTTACCA+TGG - chr1_4:67548596-67548615 None:intergenic 35.0%
AGGATTGAGGAAAATACAAC+TGG - chr1_4:67548864-67548883 None:intergenic 35.0%
!!! TTTCCTTTTGATTTCAGCAG+AGG + chr1_4:67549109-67549128 Msa0179840:intron 35.0%
TTTCCTCTGCTGAAATCAAA+AGG - chr1_4:67549115-67549134 None:intergenic 35.0%
AGGTCATATCAGTGCAAAAA+GGG - chr1_4:67549164-67549183 None:intergenic 35.0%
AAGGTCATATCAGTGCAAAA+AGG - chr1_4:67549165-67549184 None:intergenic 35.0%
! ATGATATTTGTTGACTGCTG+TGG + chr1_4:67549331-67549350 Msa0179840:intron 35.0%
! AAATTCTTATGCAGGTTGGA+AGG - chr1_4:67549510-67549529 None:intergenic 35.0%
TTCCAACCTGCATAAGAATT+TGG + chr1_4:67549509-67549528 Msa0179840:intron 35.0%
TCCAACCTGCATAAGAATTT+GGG + chr1_4:67549510-67549529 Msa0179840:intron 35.0%
GTCTAAGTAATTATGGAGTG+AGG + chr1_4:67549561-67549580 Msa0179840:intron 35.0%
AGCCACCTTCTCTTAAAATA+TGG + chr1_4:67549745-67549764 Msa0179840:intron 35.0%
AGTTGACATGTACTGTTAAC+CGG + chr1_4:67549780-67549799 Msa0179840:intron 35.0%
TGCTCATAGAATTTGTCTAC+TGG + chr1_4:67549839-67549858 Msa0179840:CDS 35.0%
!! CAATGTTTGATGGTGGTTAT+AGG + chr1_4:67549883-67549902 Msa0179840:CDS 35.0%
! TGCAGTATGCTTATTTCTTG+GGG - chr1_4:67549967-67549986 None:intergenic 35.0%
! CTTGCAGTATGCTTATTTCT+TGG - chr1_4:67549969-67549988 None:intergenic 35.0%
AGTTTGCAGTAAAAGTTGTC+AGG - chr1_4:67550118-67550137 None:intergenic 35.0%
! GACAACTTTTACTGCAAACT+TGG + chr1_4:67550118-67550137 Msa0179840:intron 35.0%
GCGTCCAGATTTATATATAC+TGG + chr1_4:67550420-67550439 Msa0179840:intron 35.0%
AGCTAGGAAAATTGGTTGTA+TGG + chr1_4:67550549-67550568 Msa0179840:intron 35.0%
TGTCTCTCAGGATATATTAC+TGG + chr1_4:67550661-67550680 Msa0179840:intron 35.0%
! CCTCAATGATAATGCATTGA+AGG - chr1_4:67550720-67550739 None:intergenic 35.0%
CCTTCAATGCATTATCATTG+AGG + chr1_4:67550717-67550736 Msa0179840:CDS 35.0%
CCAACATCGAATAGAATTGA+GGG - chr1_4:67550813-67550832 None:intergenic 35.0%
TCCAACATCGAATAGAATTG+AGG - chr1_4:67550814-67550833 None:intergenic 35.0%
! CTGTCTTCATGTTGTAGTTT+TGG + chr1_4:67550878-67550897 Msa0179840:intron 35.0%
!!! TTTCTAGTTCTTTTTGGGTG+AGG + chr1_4:67550961-67550980 Msa0179840:intron 35.0%
TACATTCTGTACATCGCAAT+TGG - chr1_4:67551418-67551437 None:intergenic 35.0%
!! GTTATTTCTTGTGTTGTACC+AGG + chr1_4:67551441-67551460 Msa0179840:three_prime_UTR 35.0%
AATGATGCTAGAGACAGAAA+GGG - chr1_4:67551580-67551599 None:intergenic 35.0%
TAATGATGCTAGAGACAGAA+AGG - chr1_4:67551581-67551600 None:intergenic 35.0%
TCTTATTCTTCCTCTCTACT+GGG - chr1_4:67551980-67551999 None:intergenic 35.0%
AGTAGAGAGGAAGAATAAGA+GGG + chr1_4:67551980-67551999 Msa0179840:three_prime_UTR 35.0%
!! ACTGGTGATTTTGTTTGCAG+AGG + chr1_4:67543244-67543263 Msa0179840:intron 40.0%
!! GATTTTGTTTGCAGAGGAAG+TGG + chr1_4:67543250-67543269 Msa0179840:intron 40.0%
TTCTGAACGCAATCAGTAAC+AGG - chr1_4:67543335-67543354 None:intergenic 40.0%
TGGGAGGAAAAGTAGCATAT+TGG + chr1_4:67543629-67543648 Msa0179840:intron 40.0%
GTTGTATTCAAGAGGGTGAA+TGG + chr1_4:67543899-67543918 Msa0179840:intron 40.0%
AAAACTGAAAGTCCTGACAG+TGG - chr1_4:67543947-67543966 None:intergenic 40.0%
CATTAGTGATCTATCCTCTC+TGG - chr1_4:67544009-67544028 None:intergenic 40.0%
CTTCTACTCAAACAGTGGTT+TGG + chr1_4:67544205-67544224 Msa0179840:intron 40.0%
TAAATCACAGTGATGAGCCA+AGG + chr1_4:67544334-67544353 Msa0179840:intron 40.0%
ACTGTATATGGTCACTTCCT+TGG - chr1_4:67544354-67544373 None:intergenic 40.0%
GCTTGATGCAGTATGTCTTA+TGG - chr1_4:67544472-67544491 None:intergenic 40.0%
AAAAACATATCGGGTTTGGG+TGG + chr1_4:67544624-67544643 Msa0179840:intron 40.0%
! GAAAAAAAGAAGTGATGGGG+GGG + chr1_4:67544655-67544674 Msa0179840:intron 40.0%
AAGGGCGGCTAAAAGTTAAA+TGG - chr1_4:67545136-67545155 None:intergenic 40.0%
CAACAACTAATTGTGGACAG+TGG + chr1_4:67545218-67545237 Msa0179840:CDS 40.0%
GCAACATTAAAACCCATGTC+AGG + chr1_4:67545360-67545379 Msa0179840:CDS 40.0%
! GATTTTCTGTGTAGGATGGA+AGG + chr1_4:67545449-67545468 Msa0179840:intron 40.0%
!! GCTGGAATTTGCTGATACAA+AGG + chr1_4:67545496-67545515 Msa0179840:CDS 40.0%
AATAAAATTCAGGTAGGCGG+TGG + chr1_4:67545572-67545591 Msa0179840:intron 40.0%
GAGCATCACATTCAACAATC+TGG - chr1_4:67545655-67545674 None:intergenic 40.0%
!! GTATTACAGGTTGGTGTGAT+CGG + chr1_4:67545829-67545848 Msa0179840:intron 40.0%
GGTGCTTTACAACCAGTTAT+TGG + chr1_4:67545901-67545920 Msa0179840:CDS 40.0%
GAAGGGGAAATGCAATAGAA+TGG - chr1_4:67545972-67545991 None:intergenic 40.0%
AAATTCAAGATACGGGGAGA+GGG - chr1_4:67545994-67546013 None:intergenic 40.0%
GATAAACTTCACAACCGGAA+GGG + chr1_4:67546198-67546217 Msa0179840:intron 40.0%
! AAATTTTCCACGATCCCTTC+CGG - chr1_4:67546215-67546234 None:intergenic 40.0%
GGTAAAGAGAGAGTTAAGCT+GGG + chr1_4:67546326-67546345 Msa0179840:intron 40.0%
AATGTATGATGCACCATCAC+AGG - chr1_4:67546575-67546594 None:intergenic 40.0%
TATGGTAAGAACTGTGAGCA+AGG - chr1_4:67546604-67546623 None:intergenic 40.0%
TAGGTTCACATTGTACAGAG+AGG + chr1_4:67546642-67546661 Msa0179840:intron 40.0%
!! GACGAAAGCATCTCTATCAA+AGG - chr1_4:67546678-67546697 None:intergenic 40.0%
AGAAATGTCTGCCTTTGCAT+TGG + chr1_4:67546716-67546735 Msa0179840:CDS 40.0%
GAAATGTCTGCCTTTGCATT+GGG + chr1_4:67546717-67546736 Msa0179840:CDS 40.0%
AAATGTCTGCCTTTGCATTG+GGG + chr1_4:67546718-67546737 Msa0179840:CDS 40.0%
GGTTATGTGTGTCCTGAAAT+TGG - chr1_4:67547070-67547089 None:intergenic 40.0%
ATCATACCTCATTCTCTGCA+AGG - chr1_4:67547193-67547212 None:intergenic 40.0%
CAGAAGATGTCCACTTCATT+CGG - chr1_4:67547228-67547247 None:intergenic 40.0%
ATTACAAACCGAACCGCTTT+GGG - chr1_4:67547402-67547421 None:intergenic 40.0%
AATTACAAACCGAACCGCTT+TGG - chr1_4:67547403-67547422 None:intergenic 40.0%
! TTCGGTTTGTAATTCCCGAA+CGG + chr1_4:67547409-67547428 Msa0179840:intron 40.0%
!! TCTCCCGAACGTTGTTTTAT+AGG + chr1_4:67547464-67547483 Msa0179840:intron 40.0%
AGAATGTTGTGTTGGATGAG+TGG - chr1_4:67547723-67547742 None:intergenic 40.0%
CAAGGATGAGAATGTTGTGT+TGG - chr1_4:67547731-67547750 None:intergenic 40.0%
CGTTGAGTTTATTCCCGTAT+TGG + chr1_4:67547754-67547773 Msa0179840:intron 40.0%
TGGGCTGTAAAATGCCAATA+CGG - chr1_4:67547771-67547790 None:intergenic 40.0%
AAGATACAGCTCGTGTGAAA+GGG - chr1_4:67547845-67547864 None:intergenic 40.0%
AAAGATACAGCTCGTGTGAA+AGG - chr1_4:67547846-67547865 None:intergenic 40.0%
AATCCGACACATTATCCTGT+GGG - chr1_4:67548008-67548027 None:intergenic 40.0%
AAATCCGACACATTATCCTG+TGG - chr1_4:67548009-67548028 None:intergenic 40.0%
GGAGTTCAAAGACTACAAGA+AGG + chr1_4:67548042-67548061 Msa0179840:CDS 40.0%
!! AGGCTTTCTGCTTTTATCCT+TGG + chr1_4:67548120-67548139 Msa0179840:intron 40.0%
! CCCTTTTATACAGGAATCCA+AGG - chr1_4:67548140-67548159 None:intergenic 40.0%
ATAGCATTAGGGATTGAACG+TGG + chr1_4:67548194-67548213 Msa0179840:intron 40.0%
GTGGATATGGTTTCTATTGC+AGG + chr1_4:67548252-67548271 Msa0179840:intron 40.0%
CTTATGCGAGTTTCAGAAAG+GGG + chr1_4:67548495-67548514 Msa0179840:CDS 40.0%
! TTTTCAAAGGCGAATTGCGT+TGG + chr1_4:67548518-67548537 Msa0179840:CDS 40.0%
AGTTAAGCATCTGTCCATGT+AGG + chr1_4:67548687-67548706 Msa0179840:intron 40.0%
TAAGCAACTCAAGACCTACA+TGG - chr1_4:67548704-67548723 None:intergenic 40.0%
CAGAAAGATTGTGAGGATTG+AGG - chr1_4:67548877-67548896 None:intergenic 40.0%
GGGGTCTTTATGATGTGAAT+AGG + chr1_4:67548919-67548938 Msa0179840:intron 40.0%
ATGTCGTGTATAGTAGTGAG+TGG + chr1_4:67549266-67549285 Msa0179840:intron 40.0%
ACCCAAATTCTTATGCAGGT+TGG - chr1_4:67549514-67549533 None:intergenic 40.0%
AGACAAAGCGAGATTGAAGA+GGG - chr1_4:67549545-67549564 None:intergenic 40.0%
TAGACAAAGCGAGATTGAAG+AGG - chr1_4:67549546-67549565 None:intergenic 40.0%
! AGTGAGGTGTTTCTAAAAGC+TGG + chr1_4:67549577-67549596 Msa0179840:intron 40.0%
ACGAAACAATGTGGACAGAA+GGG - chr1_4:67549708-67549727 None:intergenic 40.0%
AACGAAACAATGTGGACAGA+AGG - chr1_4:67549709-67549728 None:intergenic 40.0%
GCATTTCGTGCAATGTTTGA+TGG + chr1_4:67549873-67549892 Msa0179840:CDS 40.0%
TTTCGTGCAATGTTTGATGG+TGG + chr1_4:67549876-67549895 Msa0179840:CDS 40.0%
! GCAGTATGCTTATTTCTTGG+GGG - chr1_4:67549966-67549985 None:intergenic 40.0%
TTGCAGTAAAAGTTGTCAGG+AGG - chr1_4:67550115-67550134 None:intergenic 40.0%
AACTTGGCTGTTGTGTTGAA+TGG + chr1_4:67550134-67550153 Msa0179840:intron 40.0%
AGAAGGTCTTGAGCAATATC+TGG - chr1_4:67550462-67550481 None:intergenic 40.0%
ATCCTGAGAGACAAGAACAT+CGG - chr1_4:67550654-67550673 None:intergenic 40.0%
CCCTCAATTCTATTCGATGT+TGG + chr1_4:67550810-67550829 Msa0179840:intron 40.0%
! AGACAGAGCACTACTAAACA+AGG - chr1_4:67550864-67550883 None:intergenic 40.0%
!!! TAGTTCTTTTTGGGTGAGGA+GGG + chr1_4:67550965-67550984 Msa0179840:intron 40.0%
ACAAAGTAATTGCGGATCTC+TGG - chr1_4:67551329-67551348 None:intergenic 40.0%
AGATTACAGTCTATGGGAGT+TGG - chr1_4:67551369-67551388 None:intergenic 40.0%
CACTGCAGATTACAGTCTAT+GGG - chr1_4:67551375-67551394 None:intergenic 40.0%
TCACTGCAGATTACAGTCTA+TGG - chr1_4:67551376-67551395 None:intergenic 40.0%
TGTACATCGCAATTGGTTAG+AGG - chr1_4:67551411-67551430 None:intergenic 40.0%
TTTCTTGTGTTGTACCAGGA+AGG + chr1_4:67551445-67551464 Msa0179840:three_prime_UTR 40.0%
TTCTTGTGTTGTACCAGGAA+GGG + chr1_4:67551446-67551465 Msa0179840:three_prime_UTR 40.0%
AGTCGACCTGTATACCATAA+AGG - chr1_4:67551477-67551496 None:intergenic 40.0%
ATGATGCTAGAGACAGAAAG+GGG - chr1_4:67551579-67551598 None:intergenic 40.0%
TGTCAGACGACAGGAATTAA+CGG - chr1_4:67551769-67551788 None:intergenic 40.0%
TTAATTCCTGTCGTCTGACA+TGG + chr1_4:67551769-67551788 Msa0179840:three_prime_UTR 40.0%
! AAAGGTGTACCATAGGTCTA+CGG + chr1_4:67551900-67551919 Msa0179840:three_prime_UTR 40.0%
AGATATGTTCCGTAGACCTA+TGG - chr1_4:67551912-67551931 None:intergenic 40.0%
TGAAATGCGTAGAGAAAAGG+AGG + chr1_4:67551937-67551956 Msa0179840:three_prime_UTR 40.0%
CTCTTATTCTTCCTCTCTAC+TGG - chr1_4:67551981-67552000 None:intergenic 40.0%
CAGTAGAGAGGAAGAATAAG+AGG + chr1_4:67551979-67551998 Msa0179840:three_prime_UTR 40.0%
GTAGAGAGGAAGAATAAGAG+GGG + chr1_4:67551981-67552000 Msa0179840:three_prime_UTR 40.0%
TGGCGCTATGGTTAACAGAA+TGG - chr1_4:67542875-67542894 None:intergenic 45.0%
!! AAGAAGAGTGTGGTGTTGGT+TGG - chr1_4:67542895-67542914 None:intergenic 45.0%
AAGAAGGGTGAAGAAGAGTG+TGG - chr1_4:67542905-67542924 None:intergenic 45.0%
CCATGAACGAGAGAGAAGAA+GGG - chr1_4:67542920-67542939 None:intergenic 45.0%
TCCATGAACGAGAGAGAAGA+AGG - chr1_4:67542921-67542940 None:intergenic 45.0%
TCTCGTCGAAGTTGCTAATC+AGG + chr1_4:67543067-67543086 Msa0179840:CDS 45.0%
CGTGAAAGTAGACTCGAGAA+CGG - chr1_4:67543096-67543115 None:intergenic 45.0%
TTCTCGAGTCTACTTTCACG+TGG + chr1_4:67543096-67543115 Msa0179840:CDS 45.0%
GGAAGTGGTGAATGTGATTG+TGG + chr1_4:67543265-67543284 Msa0179840:CDS 45.0%
GTGGTGAATGTGATTGTGGA+AGG + chr1_4:67543269-67543288 Msa0179840:CDS 45.0%
GTGAATGTGATTGTGGAAGG+AGG + chr1_4:67543272-67543291 Msa0179840:CDS 45.0%
TGAACGCAATCAGTAACAGG+CGG - chr1_4:67543332-67543351 None:intergenic 45.0%
ACTTCATGCTCAAACGGCAA+CGG - chr1_4:67543359-67543378 None:intergenic 45.0%
!! AAAGGGAGTGCTTTCGCATT+AGG + chr1_4:67543383-67543402 Msa0179840:CDS 45.0%
ATTAGGACTTCTCGCAGTCA+AGG + chr1_4:67543400-67543419 Msa0179840:CDS 45.0%
AGTTGGCATATTAGAGTGGG+AGG + chr1_4:67543613-67543632 Msa0179840:intron 45.0%
AATGATTCGTAGCAACCAGC+AGG - chr1_4:67544496-67544515 None:intergenic 45.0%
! GAGAGAGTAAGTGCCTTGTT+CGG - chr1_4:67544543-67544562 None:intergenic 45.0%
TGCTAACATCCTCCATGATG+AGG + chr1_4:67545054-67545073 Msa0179840:intron 45.0%
AAGTGACAAGGTCCTCATCA+TGG - chr1_4:67545069-67545088 None:intergenic 45.0%
ATGAGAGGCAAACCTGACAT+GGG - chr1_4:67545375-67545394 None:intergenic 45.0%
TTTCTGTGTAGGATGGAAGG+TGG + chr1_4:67545452-67545471 Msa0179840:intron 45.0%
TCCACCACTTGTTCATTTGC+TGG + chr1_4:67545478-67545497 Msa0179840:CDS 45.0%
TCCAGCAAATGAACAAGTGG+TGG - chr1_4:67545482-67545501 None:intergenic 45.0%
CGCAGCATTAGAATCAGAGT+CGG - chr1_4:67545680-67545699 None:intergenic 45.0%
! GCTCTGGACTCAATTATTGC+CGG + chr1_4:67545944-67545963 Msa0179840:intron 45.0%
CTCTGGACTCAATTATTGCC+GGG + chr1_4:67545945-67545964 Msa0179840:intron 45.0%
GAAATGCAATAGAATGGGCC+CGG - chr1_4:67545966-67545985 None:intergenic 45.0%
CAAATTCAAGATACGGGGAG+AGG - chr1_4:67545995-67546014 None:intergenic 45.0%
!! AGCTACTGATTCAGACTGCA+AGG + chr1_4:67546171-67546190 Msa0179840:CDS 45.0%
CTGATTCAGACTGCAAGGTA+AGG + chr1_4:67546176-67546195 Msa0179840:intron 45.0%
GGATAAACTTCACAACCGGA+AGG + chr1_4:67546197-67546216 Msa0179840:intron 45.0%
GGGTAAAGAGAGAGTTAAGC+TGG + chr1_4:67546325-67546344 Msa0179840:intron 45.0%
!! TATAGGTGCTACTCCTGTGA+TGG + chr1_4:67546559-67546578 Msa0179840:intron 45.0%
TTCTTACCATACGTTCCACC+TGG + chr1_4:67546613-67546632 Msa0179840:intron 45.0%
AACAAACCAGGTGGAACGTA+TGG - chr1_4:67546622-67546641 None:intergenic 45.0%
!! ACGTTCCACCTGGTTTGTTT+AGG + chr1_4:67546623-67546642 Msa0179840:intron 45.0%
GTGAACCTAAACAAACCAGG+TGG - chr1_4:67546631-67546650 None:intergenic 45.0%
CATTGTGTGCAATACCAGCT+TGG - chr1_4:67547091-67547110 None:intergenic 45.0%
CAAGCTGGTATTGCACACAA+TGG + chr1_4:67547089-67547108 Msa0179840:CDS 45.0%
! TTATGGCCTTGCAGAGAATG+AGG + chr1_4:67547184-67547203 Msa0179840:CDS 45.0%
TTACAAACCGAACCGCTTTG+GGG - chr1_4:67547401-67547420 None:intergenic 45.0%
GGGCTGTAAAATGCCAATAC+GGG - chr1_4:67547770-67547789 None:intergenic 45.0%
AAGCAGGGTAGTTGAAATGG+AGG - chr1_4:67547894-67547913 None:intergenic 45.0%
TCCATTTCAACTACCCTGCT+TGG + chr1_4:67547893-67547912 Msa0179840:intron 45.0%
TCCAAGCAGGGTAGTTGAAA+TGG - chr1_4:67547897-67547916 None:intergenic 45.0%
TTCCCCACAGGATAATGTGT+CGG + chr1_4:67548002-67548021 Msa0179840:intron 45.0%
ATCCGACACATTATCCTGTG+GGG - chr1_4:67548007-67548026 None:intergenic 45.0%
GTGTCGGATTTCATTAGGGT+AGG + chr1_4:67548018-67548037 Msa0179840:CDS 45.0%
TCGGATTTCATTAGGGTAGG+TGG + chr1_4:67548021-67548040 Msa0179840:CDS 45.0%
!! ATCAAGTTGCTGTTTGGAGC+TGG - chr1_4:67548745-67548764 None:intergenic 45.0%
AGCTCCAAACAGCAACTTGA+TGG + chr1_4:67548744-67548763 Msa0179840:CDS 45.0%
! AGCACCATCAAGTTGCTGTT+TGG - chr1_4:67548751-67548770 None:intergenic 45.0%
!! TGCTGTGGCTTTATGCAAGT+TGG + chr1_4:67548767-67548786 Msa0179840:CDS 45.0%
! CAAGTTGGCCAATAAAGCCT+CGG + chr1_4:67548782-67548801 Msa0179840:CDS 45.0%
TTGAACCTACCTGTGGTGTT+GGG - chr1_4:67548839-67548858 None:intergenic 45.0%
GGGGTCTTTATGATGTCAGT+AGG + chr1_4:67549048-67549067 Msa0179840:intron 45.0%
AGTAGTGAGTGGTCGATACA+AGG + chr1_4:67549277-67549296 Msa0179840:intron 45.0%
CAGCACCCAAATTCTTATGC+AGG - chr1_4:67549518-67549537 None:intergenic 45.0%
TTCTTGGGGGAGCTTCTTTA+GGG - chr1_4:67549953-67549972 None:intergenic 45.0%
TTTCTTGGGGGAGCTTCTTT+AGG - chr1_4:67549954-67549973 None:intergenic 45.0%
TGCATTTGCATGACAGGAGA+AGG + chr1_4:67550250-67550269 Msa0179840:intron 45.0%
ATGACAGGAGAAGGATGCAA+GGG + chr1_4:67550259-67550278 Msa0179840:intron 45.0%
ATTGATCAGCTGCTCGAAGA+AGG - chr1_4:67550479-67550498 None:intergenic 45.0%
CTGTGAGTACACAATTGCAC+AGG + chr1_4:67550524-67550543 Msa0179840:CDS 45.0%
CACAGGTGAGCTAGGAAAAT+TGG + chr1_4:67550541-67550560 Msa0179840:intron 45.0%
TCCTGAGAGACAAGAACATC+GGG - chr1_4:67550653-67550672 None:intergenic 45.0%
! ACTTTGATAAGTTGAGCGCG+AGG + chr1_4:67550768-67550787 Msa0179840:CDS 45.0%
AGGGAATCAGATCAATACCC+TGG - chr1_4:67550794-67550813 None:intergenic 45.0%
!!! CTAGTTCTTTTTGGGTGAGG+AGG + chr1_4:67550964-67550983 Msa0179840:intron 45.0%
TGACTGTAGAAACCAACCTC+TGG + chr1_4:67551134-67551153 Msa0179840:intron 45.0%
! CTCTGGTTAGCTGAATGGTT+CGG + chr1_4:67551151-67551170 Msa0179840:intron 45.0%
TCTTCAGCTTCTTGATTGCG+TGG + chr1_4:67551259-67551278 Msa0179840:intron 45.0%
!! AGAGAGTGCCTGCAAACAAT+TGG - chr1_4:67551287-67551306 None:intergenic 45.0%
TCTTGTGTTGTACCAGGAAG+GGG + chr1_4:67551447-67551466 Msa0179840:three_prime_UTR 45.0%
GGGTCTCCTTTATGGTATAC+AGG + chr1_4:67551468-67551487 Msa0179840:three_prime_UTR 45.0%
AGAGAACATGCACTACTCTC+TGG - chr1_4:67551517-67551536 None:intergenic 45.0%
! AAGAATAAGAGGGGTGCAGT+TGG + chr1_4:67551990-67552009 Msa0179840:three_prime_UTR 45.0%
! GGTGAAGAAGAGTGTGGTGT+TGG - chr1_4:67542899-67542918 None:intergenic 50.0%
CCCTTCTTCTCTCTCGTTCA+TGG + chr1_4:67542917-67542936 Msa0179840:exon 50.0%
ATGGAGTTTCAGAGACGCCA+AGG + chr1_4:67542936-67542955 Msa0179840:CDS 50.0%
! ACGTTTTTGCCCCTTCCTCT+CGG - chr1_4:67542973-67542992 None:intergenic 50.0%
ATACTGCATCAAGCACCTGC+TGG + chr1_4:67544478-67544497 Msa0179840:intron 50.0%
!! GTGAGGGTGTCTCTTGCTAT+GGG + chr1_4:67544915-67544934 Msa0179840:intron 50.0%
TGACAAGGTCCTCATCATGG+AGG - chr1_4:67545066-67545085 None:intergenic 50.0%
CATGAGAGGCAAACCTGACA+TGG - chr1_4:67545376-67545395 None:intergenic 50.0%
AGGGAAGCGGCATTGTTACT+TGG + chr1_4:67546139-67546158 Msa0179840:CDS 50.0%
TGCCTTTGCATTGGGGAGAT+TGG + chr1_4:67546725-67546744 Msa0179840:CDS 50.0%
CAGGACACACATAACCAAGC+TGG + chr1_4:67547074-67547093 Msa0179840:intron 50.0%
GCTGGTATTGCACACAATGG+TGG + chr1_4:67547092-67547111 Msa0179840:CDS 50.0%
GAGTCAAGAAGCTTGAGCAG+TGG - chr1_4:67547125-67547144 None:intergenic 50.0%
CAACCAAGCCGTGTCTCATT+AGG + chr1_4:67547262-67547281 Msa0179840:intron 50.0%
CAAGCCGTGTCTCATTAGGT+GGG + chr1_4:67547266-67547285 Msa0179840:intron 50.0%
CGATCCCACCTAATGAGACA+CGG - chr1_4:67547273-67547292 None:intergenic 50.0%
CGTGTCTCATTAGGTGGGAT+CGG + chr1_4:67547271-67547290 Msa0179840:intron 50.0%
ATTAGGTGGGATCGGCTATG+TGG + chr1_4:67547279-67547298 Msa0179840:intron 50.0%
TACAAACCGAACCGCTTTGG+GGG - chr1_4:67547400-67547419 None:intergenic 50.0%
TTCGGGAGATATCTCCCGAA+GGG - chr1_4:67547453-67547472 None:intergenic 50.0%
AGCTCAATCGCTAGAGACAG+AGG - chr1_4:67547559-67547578 None:intergenic 50.0%
!! ACAGCAACTTGATGGTGCTG+TGG + chr1_4:67548752-67548771 Msa0179840:CDS 50.0%
! TGAACCTACCTGTGGTGTTG+GGG - chr1_4:67548838-67548857 None:intergenic 50.0%
CTTGAACCTACCTGTGGTGT+TGG - chr1_4:67548840-67548859 None:intergenic 50.0%
ACTGGACTTGAACCTACCTG+TGG - chr1_4:67548846-67548865 None:intergenic 50.0%
! CTTATGCAGGTTGGAAGGCA+TGG - chr1_4:67549505-67549524 None:intergenic 50.0%
CATGACAGGAGAAGGATGCA+AGG + chr1_4:67550258-67550277 Msa0179840:intron 50.0%
CACAATTGCACAGGTGAGCT+AGG + chr1_4:67550533-67550552 Msa0179840:intron 50.0%
ACCCGATGTTCTTGTCTCTC+AGG + chr1_4:67550649-67550668 Msa0179840:intron 50.0%
!!! GTAGTTTTGGTGACCGACCT+TGG + chr1_4:67550891-67550910 Msa0179840:intron 50.0%
CCATTCAGCTAACCAGAGGT+TGG - chr1_4:67551149-67551168 None:intergenic 50.0%
! CCAACCTCTGGTTAGCTGAA+TGG + chr1_4:67551146-67551165 Msa0179840:intron 50.0%
CGAACCATTCAGCTAACCAG+AGG - chr1_4:67551153-67551172 None:intergenic 50.0%
CTTGTGTTGTACCAGGAAGG+GGG + chr1_4:67551448-67551467 Msa0179840:three_prime_UTR 50.0%
ACTGCTGGGTAATTTAGGCC+AGG + chr1_4:67551743-67551762 Msa0179840:three_prime_UTR 50.0%
ACAGTTCCATGTCAGACGAC+AGG - chr1_4:67551778-67551797 None:intergenic 50.0%
TACTATACTCGTACGGCCCA+AGG + chr1_4:67551817-67551836 Msa0179840:three_prime_UTR 50.0%
ACTTTCTGCACCCAGTAGAG+AGG + chr1_4:67551967-67551986 Msa0179840:three_prime_UTR 50.0%
!! TGTGGTGTTGGTTGGCGCTA+TGG - chr1_4:67542887-67542906 None:intergenic 55.0%
GACGAGATCTGACGGTCTTC+CGG - chr1_4:67543014-67543033 None:intergenic 55.0%
GGAAGACCGTCAGATCTCGT+CGG + chr1_4:67543013-67543032 Msa0179840:CDS 55.0%
GAATGAAGACGATCGAGCCG+CGG + chr1_4:67543118-67543137 Msa0179840:CDS 55.0%
ATGAGTAGCACGCTTAGCCG+CGG - chr1_4:67543138-67543157 None:intergenic 55.0%
CTCGCCGATCTCGCTAAGAA+TGG + chr1_4:67543161-67543180 Msa0179840:CDS 55.0%
! TGTGGAAGGAGGTGCGATTC+CGG + chr1_4:67543283-67543302 Msa0179840:CDS 55.0%
! GGTGGTCTGGTCTGAGACTA+CGG + chr1_4:67544893-67544912 Msa0179840:intron 55.0%
! TCTGGTCTGAGACTACGGTG+AGG + chr1_4:67544898-67544917 Msa0179840:intron 55.0%
! CTGGTCTGAGACTACGGTGA+GGG + chr1_4:67544899-67544918 Msa0179840:intron 55.0%
!! GGTGAGGGTGTCTCTTGCTA+TGG + chr1_4:67544914-67544933 Msa0179840:intron 55.0%
AAGGTGCAAAGAGCAGCTGC+TGG + chr1_4:67545515-67545534 Msa0179840:CDS 55.0%
AAGATACGGGGAGAGGGAAG+GGG - chr1_4:67545988-67546007 None:intergenic 55.0%
CAAGATACGGGGAGAGGGAA+GGG - chr1_4:67545989-67546008 None:intergenic 55.0%
TCAAGATACGGGGAGAGGGA+AGG - chr1_4:67545990-67546009 None:intergenic 55.0%
ACGCTGCCCTGAAAGTCAGA+GGG + chr1_4:67546120-67546139 Msa0179840:CDS 55.0%
CCGCTTCCCTCTGACTTTCA+GGG - chr1_4:67546129-67546148 None:intergenic 55.0%
CCCTGAAAGTCAGAGGGAAG+CGG + chr1_4:67546126-67546145 Msa0179840:CDS 55.0%
TTCACAACCGGAAGGGATCG+TGG + chr1_4:67546205-67546224 Msa0179840:intron 55.0%
GGCCAATCTCCCCAATGCAA+AGG - chr1_4:67546730-67546749 None:intergenic 55.0%
CCACCTAATGAGACACGGCT+TGG - chr1_4:67547268-67547287 None:intergenic 55.0%
CCAAGCCGTGTCTCATTAGG+TGG + chr1_4:67547265-67547284 Msa0179840:intron 55.0%
!!! GCTTTTTTGGCCCCCCAAAG+CGG + chr1_4:67547386-67547405 Msa0179840:intron 55.0%
! ACAAACCGAACCGCTTTGGG+GGG - chr1_4:67547399-67547418 None:intergenic 55.0%
GTTCGGGAGATATCTCCCGA+AGG - chr1_4:67547454-67547473 None:intergenic 55.0%
! AGACAGGGCCGAGGCTTTAT+TGG - chr1_4:67548793-67548812 None:intergenic 55.0%
! GGGGGAGCTTCTTTAGGGAA+GGG - chr1_4:67549948-67549967 None:intergenic 55.0%
! TGGGGGAGCTTCTTTAGGGA+AGG - chr1_4:67549949-67549968 None:intergenic 55.0%
GACAAGAACATCGGGTCACG+AGG - chr1_4:67550645-67550664 None:intergenic 55.0%
! ATAAGTTGAGCGCGAGGCCA+GGG + chr1_4:67550774-67550793 Msa0179840:CDS 55.0%
GCGTGGCACCAATTGTTTGC+AGG + chr1_4:67551276-67551295 Msa0179840:intron 55.0%
CATAAAGGAGACCCCCTTCC+TGG - chr1_4:67551462-67551481 None:intergenic 55.0%
CAGGAAGGGGGTCTCCTTTA+TGG + chr1_4:67551460-67551479 Msa0179840:three_prime_UTR 55.0%
GACGACAGGAATTAACGGCC+TGG - chr1_4:67551764-67551783 None:intergenic 55.0%
TGACACCAGCAGCATGCCTT+GGG - chr1_4:67551836-67551855 None:intergenic 55.0%
TCTCGGAGAGGCAGTGACCT+TGG - chr1_4:67542956-67542975 None:intergenic 60.0%
AAGGTCACTGCCTCTCCGAG+AGG + chr1_4:67542955-67542974 Msa0179840:CDS 60.0%
TCACTGCCTCTCCGAGAGGA+AGG + chr1_4:67542959-67542978 Msa0179840:CDS 60.0%
CACTGCCTCTCCGAGAGGAA+GGG + chr1_4:67542960-67542979 Msa0179840:CDS 60.0%
ACTGCCTCTCCGAGAGGAAG+GGG + chr1_4:67542961-67542980 Msa0179840:CDS 60.0%
TTTGCCCCTTCCTCTCGGAG+AGG - chr1_4:67542968-67542987 None:intergenic 60.0%
!! GAGAAGTGCCGCACGTTCGT+CGG - chr1_4:67543051-67543070 None:intergenic 60.0%
CACGCTGCCCTGAAAGTCAG+AGG + chr1_4:67546119-67546138 Msa0179840:CDS 60.0%
GCCGCTTCCCTCTGACTTTC+AGG - chr1_4:67546130-67546149 None:intergenic 60.0%
! TGCATTGGGGAGATTGGCCC+AGG + chr1_4:67546731-67546750 Msa0179840:CDS 60.0%
TTTGGCCCCCCAAAGCGGTT+CGG + chr1_4:67547391-67547410 Msa0179840:intron 60.0%
AGCGGCGTCTACAGGAGACA+GGG - chr1_4:67548808-67548827 None:intergenic 60.0%
! TGGTGTTGGGGAAGGAGGAG+CGG - chr1_4:67548826-67548845 None:intergenic 60.0%
TCCTCCTTCCCCAACACCAC+AGG + chr1_4:67548827-67548846 Msa0179840:CDS 60.0%
! ACCTGTGGTGTTGGGGAAGG+AGG - chr1_4:67548831-67548850 None:intergenic 60.0%
! CCTACCTGTGGTGTTGGGGA+AGG - chr1_4:67548834-67548853 None:intergenic 60.0%
CCTTCCCCAACACCACAGGT+AGG + chr1_4:67548831-67548850 Msa0179840:intron 60.0%
! GATAAGTTGAGCGCGAGGCC+AGG + chr1_4:67550773-67550792 Msa0179840:CDS 60.0%
GTGACACCAGCAGCATGCCT+TGG - chr1_4:67551837-67551856 None:intergenic 60.0%
!! GCGGTGCCGACGAGATCTGA+CGG - chr1_4:67543022-67543041 None:intergenic 65.0%
! AAGTGCCGCACGTTCGTCGG+CGG - chr1_4:67543048-67543067 None:intergenic 65.0%
GTCTACAGGAGACAGGGCCG+AGG - chr1_4:67548802-67548821 None:intergenic 65.0%
GAGCGGCGTCTACAGGAGAC+AGG - chr1_4:67548809-67548828 None:intergenic 65.0%
GAAGGAGGAGCGGCGTCTAC+AGG - chr1_4:67548816-67548835 None:intergenic 65.0%
TACGGCCCAAGGCATGCTGC+TGG + chr1_4:67551828-67551847 Msa0179840:three_prime_UTR 65.0%
GCACGTTCGTCGGCGGTAGG+CGG - chr1_4:67543041-67543060 None:intergenic 70.0%
GCCTACCGCCGACGAACGTG+CGG + chr1_4:67543040-67543059 Msa0179840:CDS 70.0%
GCCGCACGTTCGTCGGCGGT+AGG - chr1_4:67543044-67543063 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 67542801 67552015 67542801 ID=Msa0179840;Name=Msa0179840
chr1_4 mRNA 67542801 67552015 67542801 ID=Msa0179840-mRNA-1;Parent=Msa0179840;Name=Msa0179840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=135|1|1|1|1|1|19|630|704
chr1_4 exon 67542801 67543182 67542801 ID=Msa0179840-mRNA-1:exon:22194;Parent=Msa0179840-mRNA-1
chr1_4 exon 67543264 67543421 67543264 ID=Msa0179840-mRNA-1:exon:22195;Parent=Msa0179840-mRNA-1
chr1_4 exon 67545209 67545381 67545209 ID=Msa0179840-mRNA-1:exon:22196;Parent=Msa0179840-mRNA-1
chr1_4 exon 67545463 67545583 67545463 ID=Msa0179840-mRNA-1:exon:22197;Parent=Msa0179840-mRNA-1
chr1_4 exon 67545656 67545730 67545656 ID=Msa0179840-mRNA-1:exon:22198;Parent=Msa0179840-mRNA-1
chr1_4 exon 67545838 67545932 67545838 ID=Msa0179840-mRNA-1:exon:22199;Parent=Msa0179840-mRNA-1
chr1_4 exon 67546117 67546192 67546117 ID=Msa0179840-mRNA-1:exon:22200;Parent=Msa0179840-mRNA-1
chr1_4 exon 67546645 67546752 67546645 ID=Msa0179840-mRNA-1:exon:22201;Parent=Msa0179840-mRNA-1
chr1_4 exon 67547077 67547205 67547077 ID=Msa0179840-mRNA-1:exon:22202;Parent=Msa0179840-mRNA-1
chr1_4 exon 67548012 67548080 67548012 ID=Msa0179840-mRNA-1:exon:22203;Parent=Msa0179840-mRNA-1
chr1_4 exon 67548274 67548333 67548274 ID=Msa0179840-mRNA-1:exon:22204;Parent=Msa0179840-mRNA-1
chr1_4 exon 67548474 67548597 67548474 ID=Msa0179840-mRNA-1:exon:22205;Parent=Msa0179840-mRNA-1
chr1_4 exon 67548709 67548848 67548709 ID=Msa0179840-mRNA-1:exon:22206;Parent=Msa0179840-mRNA-1
chr1_4 exon 67549633 67549696 67549633 ID=Msa0179840-mRNA-1:exon:22207;Parent=Msa0179840-mRNA-1
chr1_4 exon 67549826 67549905 67549826 ID=Msa0179840-mRNA-1:exon:22208;Parent=Msa0179840-mRNA-1
chr1_4 exon 67550266 67550330 67550266 ID=Msa0179840-mRNA-1:exon:22209;Parent=Msa0179840-mRNA-1
chr1_4 exon 67550428 67550545 67550428 ID=Msa0179840-mRNA-1:exon:22210;Parent=Msa0179840-mRNA-1
chr1_4 exon 67550671 67550795 67550671 ID=Msa0179840-mRNA-1:exon:22211;Parent=Msa0179840-mRNA-1
chr1_4 exon 67551298 67552015 67551298 ID=Msa0179840-mRNA-1:exon:22212;Parent=Msa0179840-mRNA-1
chr1_4 five_prime_UTR 67542801 67542935 67542801 ID=Msa0179840-mRNA-1:five_prime_utr;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67542936 67543182 67542936 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67543264 67543421 67543264 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67545209 67545381 67545209 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67545463 67545583 67545463 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67545656 67545730 67545656 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67545838 67545932 67545838 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67546117 67546192 67546117 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67546645 67546752 67546645 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67547077 67547205 67547077 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67548012 67548080 67548012 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67548274 67548333 67548274 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67548474 67548597 67548474 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67548709 67548848 67548709 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67549633 67549696 67549633 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67549826 67549905 67549826 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67550266 67550330 67550266 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67550428 67550545 67550428 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67550671 67550795 67550671 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 CDS 67551298 67551385 67551298 ID=Msa0179840-mRNA-1:cds;Parent=Msa0179840-mRNA-1
chr1_4 three_prime_UTR 67551386 67552015 67551386 ID=Msa0179840-mRNA-1:three_prime_utr;Parent=Msa0179840-mRNA-1
Gene Sequence

>Msa0179840

ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGACGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTCGCCGATCTCGCTAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTTACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCTTTCGCATTAGGACTTCTCGCAGTCAAGCCGGAACATCAACAACTAATTGTGGACAGTGGTGCCTTAACACACCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGACGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTAGTTCACTCATCTCCGAATATAAAGAAAGAGGTTCTATTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGTTGAACCATCTGTTATATCTTATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCCCTGTCTCCTGTAGACGCCGCTCCTCCTTCCCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGCTTTTATGCTCATAGAATTTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTAAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGAGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGCCAACTCCCATAGACTGTAA
Protein sequence

>Msa0179840

MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEDDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAVALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARPGHSLLIQRIIPEIRNYFVKALTNANSHRL*