Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077520 | sp|Q9LW60|P2C44_ARATH | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 3.04e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077520 | A0A072VXE0 | 98.921 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077520 | Msa0832950 | 0.808534 | 2.955039e-50 | -8.615850e-47 |
| Msa0077520 | Msa1088500 | 0.840920 | 6.503457e-58 | -8.615850e-47 |
| Msa0077520 | Msa1366190 | 0.820536 | 6.513118e-53 | -8.615850e-47 |
| Msa0077520 | Msa1387400 | 0.867903 | 9.710949e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077520 | MtrunA17_Chr1g0187481 | 98.921 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 0.0 | 577 |
| Msa0077520 | MtrunA17_Chr1g0166481 | 60.432 | 278 | 106 | 1 | 1 | 278 | 1 | 274 | 1.06e-119 | 343 |
| Msa0077520 | MtrunA17_Chr8g0360351 | 34.766 | 256 | 141 | 6 | 41 | 277 | 33 | 281 | 6.90e-38 | 134 |
| Msa0077520 | MtrunA17_Chr2g0317021 | 34.630 | 257 | 140 | 8 | 41 | 277 | 84 | 332 | 3.37e-37 | 134 |
| Msa0077520 | MtrunA17_Chr4g0050381 | 32.830 | 265 | 152 | 6 | 32 | 277 | 19 | 276 | 1.12e-36 | 131 |
| Msa0077520 | MtrunA17_Chr2g0279151 | 32.117 | 274 | 160 | 6 | 23 | 277 | 14 | 280 | 1.41e-35 | 129 |
| Msa0077520 | MtrunA17_Chr5g0426141 | 33.186 | 226 | 130 | 4 | 71 | 277 | 58 | 281 | 2.31e-33 | 123 |
| Msa0077520 | MtrunA17_Chr3g0115851 | 29.478 | 268 | 157 | 6 | 32 | 277 | 24 | 281 | 6.06e-32 | 119 |
| Msa0077520 | MtrunA17_Chr4g0051661 | 31.128 | 257 | 146 | 6 | 42 | 277 | 151 | 397 | 2.48e-30 | 117 |
| Msa0077520 | MtrunA17_Chr1g0150451 | 29.767 | 215 | 134 | 4 | 80 | 277 | 109 | 323 | 5.50e-27 | 107 |
| Msa0077520 | MtrunA17_Chr3g0136711 | 28.889 | 225 | 143 | 4 | 70 | 277 | 56 | 280 | 1.93e-26 | 105 |
| Msa0077520 | MtrunA17_Chr1g0212961 | 26.106 | 226 | 144 | 5 | 71 | 278 | 118 | 338 | 1.42e-20 | 89.7 |
| Msa0077520 | MtrunA17_Chr3g0126511 | 26.407 | 231 | 149 | 4 | 67 | 278 | 113 | 341 | 8.89e-20 | 87.8 |
| Msa0077520 | MtrunA17_Chr1g0171571 | 22.951 | 244 | 154 | 8 | 63 | 275 | 402 | 642 | 1.13e-12 | 67.8 |
| Msa0077520 | MtrunA17_Chr2g0293811 | 22.078 | 231 | 145 | 7 | 79 | 275 | 100 | 329 | 1.42e-12 | 67.0 |
| Msa0077520 | MtrunA17_Chr3g0105371 | 26.609 | 233 | 135 | 7 | 74 | 277 | 113 | 338 | 8.29e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077520 | AT3G23360.1 | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 3.09e-86 | 258 |
| Msa0077520 | AT2G20630.1 | 36.719 | 256 | 136 | 7 | 41 | 277 | 30 | 278 | 1.40e-41 | 144 |
| Msa0077520 | AT4G28400.1 | 34.182 | 275 | 154 | 7 | 22 | 277 | 16 | 282 | 1.69e-41 | 144 |
| Msa0077520 | AT4G28400.3 | 35.156 | 256 | 140 | 6 | 41 | 277 | 12 | 260 | 4.82e-41 | 142 |
| Msa0077520 | AT2G20630.2 | 36.328 | 256 | 137 | 7 | 41 | 277 | 30 | 278 | 2.11e-39 | 139 |
| Msa0077520 | AT3G15260.2 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.36e-38 | 135 |
| Msa0077520 | AT3G15260.1 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.36e-38 | 135 |
| Msa0077520 | AT1G78200.1 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.79e-32 | 121 |
| Msa0077520 | AT1G78200.3 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.79e-32 | 121 |
| Msa0077520 | AT1G78200.2 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.79e-32 | 121 |
| Msa0077520 | AT1G78200.5 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 5.67e-32 | 118 |
| Msa0077520 | AT1G78200.4 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 5.67e-32 | 118 |
| Msa0077520 | AT1G22280.1 | 34.389 | 221 | 124 | 5 | 76 | 277 | 62 | 280 | 2.02e-31 | 118 |
| Msa0077520 | AT1G22280.3 | 33.921 | 227 | 123 | 6 | 76 | 277 | 62 | 286 | 3.18e-29 | 112 |
| Msa0077520 | AT2G34740.1 | 31.128 | 257 | 145 | 8 | 43 | 277 | 88 | 334 | 1.22e-28 | 112 |
| Msa0077520 | AT1G34750.2 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 2.56e-28 | 110 |
| Msa0077520 | AT1G34750.1 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 2.56e-28 | 110 |
| Msa0077520 | AT1G34750.3 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 2.56e-28 | 110 |
| Msa0077520 | AT5G24940.1 | 28.000 | 225 | 145 | 4 | 70 | 277 | 55 | 279 | 1.82e-27 | 110 |
| Msa0077520 | AT4G31750.2 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 2.76e-27 | 107 |
| Msa0077520 | AT4G31750.1 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 3.20e-27 | 107 |
| Msa0077520 | AT4G31750.3 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 3.20e-27 | 107 |
| Msa0077520 | AT5G10740.1 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 9.77e-26 | 104 |
| Msa0077520 | AT5G10740.2 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 9.77e-26 | 104 |
| Msa0077520 | AT4G28400.2 | 31.466 | 232 | 132 | 7 | 22 | 234 | 16 | 239 | 3.21e-24 | 98.6 |
| Msa0077520 | AT5G53140.1 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 4.25e-22 | 95.5 |
| Msa0077520 | AT5G53140.2 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 4.25e-22 | 95.5 |
| Msa0077520 | AT1G43900.1 | 28.054 | 221 | 133 | 7 | 79 | 278 | 154 | 369 | 1.21e-19 | 87.8 |
| Msa0077520 | AT2G34740.3 | 29.439 | 214 | 119 | 8 | 43 | 234 | 84 | 287 | 9.39e-18 | 82.0 |
| Msa0077520 | AT2G34740.2 | 29.439 | 214 | 119 | 8 | 43 | 234 | 102 | 305 | 9.81e-18 | 82.0 |
| Msa0077520 | AT1G34750.4 | 26.768 | 198 | 110 | 5 | 71 | 243 | 58 | 245 | 2.02e-12 | 65.9 |
| Msa0077520 | AT1G67820.1 | 26.829 | 205 | 115 | 7 | 79 | 255 | 151 | 348 | 1.06e-11 | 65.1 |
| Msa0077520 | AT1G67820.2 | 26.829 | 205 | 115 | 7 | 79 | 255 | 115 | 312 | 1.18e-11 | 65.1 |
| Msa0077520 | AT1G07430.1 | 24.413 | 213 | 129 | 7 | 64 | 244 | 142 | 354 | 2.67e-11 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAGAATTGTGGTATTT+TGG | 0.097610 | 1_2:-54510093 | Msa0077520:CDS |
| AAGCTTCTTGGCAAAGAAAT+AGG | 0.232943 | 1_2:+54510023 | None:intergenic |
| ACTGATTTGGATAGGCATTT+AGG | 0.245640 | 1_2:-54510293 | Msa0077520:intron |
| TATTAGCAAGCAATGGAATA+TGG | 0.286328 | 1_2:-54509366 | Msa0077520:CDS |
| AGGTTTCTGCTAAGATTTCT+AGG | 0.286598 | 1_2:-54510264 | Msa0077520:CDS |
| AAGTACCTCTTGAAGCTTCT+TGG | 0.293980 | 1_2:+54510011 | None:intergenic |
| TTGCTTCTTAGGCTCAAATA+TGG | 0.302832 | 1_2:-54509875 | Msa0077520:intron |
| ATCCATGAAGGCTTCTTTGC+TGG | 0.309411 | 1_2:+54510222 | None:intergenic |
| TGCCAGCAAAGAAGCCTTCA+TGG | 0.323868 | 1_2:-54510224 | Msa0077520:CDS |
| TCTGCGAGACCAATGTCTTT+TGG | 0.333774 | 1_2:+54509638 | None:intergenic |
| ACTTGATAACCATGTGTTAC+TGG | 0.374072 | 1_2:+54510195 | None:intergenic |
| CTCATACTAGCATATGAATC+AGG | 0.417446 | 1_2:-54509472 | Msa0077520:intron |
| GGAATCTTTGATCCACTAGT+TGG | 0.418980 | 1_2:-54510072 | Msa0077520:CDS |
| AAACTTGTAATAGCTAATAT+AGG | 0.427407 | 1_2:-54509729 | Msa0077520:CDS |
| GATAGGCATTTAGGTTAAGA+AGG | 0.441378 | 1_2:-54510284 | Msa0077520:intron |
| TGTGGTACAAAGAGAGCAAA+TGG | 0.444654 | 1_2:-54510118 | Msa0077520:CDS |
| AGAGTTGTTGTGTGTAAAGA+TGG | 0.457279 | 1_2:-54509699 | Msa0077520:CDS |
| AAGCATTCAGCTGCTTCTTG+TGG | 0.465061 | 1_2:+54509162 | None:intergenic |
| GAAATAGGATTGCATGTACT+TGG | 0.468860 | 1_2:+54510038 | None:intergenic |
| AATGGGTTCAGCATCTGTTA+TGG | 0.471322 | 1_2:-54509766 | Msa0077520:CDS |
| AGAGAGCTTATCTTGGTGTA+AGG | 0.474540 | 1_2:-54509830 | Msa0077520:CDS |
| TAGGCTCAAATATGGAGAAA+AGG | 0.484819 | 1_2:-54509867 | Msa0077520:CDS |
| ATTAGCAAGCAATGGAATAT+GGG | 0.490449 | 1_2:-54509365 | Msa0077520:CDS |
| ATATGAAGAGACAAGTAGAA+TGG | 0.491915 | 1_2:-54509784 | Msa0077520:CDS |
| GCATCTGTTATGGTAATCAA+TGG | 0.512835 | 1_2:-54509756 | Msa0077520:CDS |
| TATGAAGAGACAAGTAGAAT+GGG | 0.527698 | 1_2:-54509783 | Msa0077520:CDS |
| TTCTGCTAAGATTTCTAGGA+AGG | 0.531817 | 1_2:-54510260 | Msa0077520:CDS |
| CTCAGACTTTGATTCAGTTG+TGG | 0.545795 | 1_2:-54510136 | Msa0077520:CDS |
| GAGCATCATATGATCAAAGA+TGG | 0.545831 | 1_2:-54510168 | Msa0077520:CDS |
| ATGATGAAGAGAGCTTATCT+TGG | 0.546030 | 1_2:-54509837 | Msa0077520:CDS |
| GAGAGCTTATCTTGGTGTAA+GGG | 0.570029 | 1_2:-54509829 | Msa0077520:CDS |
| GATTTCTAGGAAGGAAGAGA+AGG | 0.572846 | 1_2:-54510251 | Msa0077520:CDS |
| GTAACCTTGTCTCCAACTAG+TGG | 0.574542 | 1_2:+54510060 | None:intergenic |
| CTTTGCCAAGAAGCTTCAAG+AGG | 0.579098 | 1_2:-54510016 | Msa0077520:intron |
| ACATCTTCATCTCAAGCTCA+AGG | 0.592522 | 1_2:-54510608 | Msa0077520:intron |
| AACAATCAGCCAAAAGACAT+TGG | 0.594173 | 1_2:-54509647 | Msa0077520:CDS |
| TGATCCACTAGTTGGAGACA+AGG | 0.603169 | 1_2:-54510064 | Msa0077520:CDS |
| TGTTGTGTGTAAAGATGGAA+TGG | 0.605621 | 1_2:-54509694 | Msa0077520:CDS |
| GAATCTAATAAGTCACATAG+AGG | 0.614445 | 1_2:-54509187 | Msa0077520:CDS |
| AAATGGATCAAACAGAATTG+TGG | 0.616235 | 1_2:-54510101 | Msa0077520:CDS |
| AACACATGGTTATCAAGTGG+TGG | 0.632461 | 1_2:-54510190 | Msa0077520:CDS |
| GTTACTGGTGTCATCCATGA+AGG | 0.634278 | 1_2:+54510210 | None:intergenic |
| AGCAAGCAATGGAATATGGG+AGG | 0.652311 | 1_2:-54509362 | Msa0077520:intron |
| AGTAACACATGGTTATCAAG+TGG | 0.665524 | 1_2:-54510193 | Msa0077520:CDS |
| TGGATGACACCAGTAACACA+TGG | 0.713236 | 1_2:-54510204 | Msa0077520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAACAAAATATATTA+TGG | + | chr1_2:54510179-54510198 | None:intergenic | 10.0% |
| !! | AACATTAACAAAATATATTA+TGG | + | chr1_2:54510179-54510198 | None:intergenic | 10.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | + | chr1_2:54509150-54509169 | None:intergenic | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | + | chr1_2:54509782-54509801 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | - | chr1_2:54509828-54509847 | Msa0077520:CDS | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | - | chr1_2:54509985-54510004 | Msa0077520:intron | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | - | chr1_2:54510198-54510217 | Msa0077520:CDS | 20.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | + | chr1_2:54509150-54509169 | None:intergenic | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | + | chr1_2:54509782-54509801 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | - | chr1_2:54509828-54509847 | Msa0077520:CDS | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | - | chr1_2:54509985-54510004 | Msa0077520:intron | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | - | chr1_2:54510198-54510217 | Msa0077520:CDS | 20.0% |
| ! | CAGTGTAATGTAATGTAATA+TGG | + | chr1_2:54509159-54509178 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAG+TGG | - | chr1_2:54509207-54509226 | Msa0077520:CDS | 25.0% |
| ! | ACAATGCTTCCTTTAAATAT+TGG | - | chr1_2:54509770-54509789 | Msa0077520:CDS | 25.0% |
| ! | TCTTTGGATTTATTAGACTT+TGG | - | chr1_2:54510128-54510147 | Msa0077520:CDS | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | - | chr1_2:54510341-54510360 | Msa0077520:intron | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | + | chr1_2:54510390-54510409 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | - | chr1_2:54510389-54510408 | Msa0077520:intron | 25.0% |
| ! | CAGTGTAATGTAATGTAATA+TGG | + | chr1_2:54509159-54509178 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAG+TGG | - | chr1_2:54509207-54509226 | Msa0077520:CDS | 25.0% |
| ! | ACAATGCTTCCTTTAAATAT+TGG | - | chr1_2:54509770-54509789 | Msa0077520:CDS | 25.0% |
| ! | TCTTTGGATTTATTAGACTT+TGG | - | chr1_2:54510128-54510147 | Msa0077520:CDS | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | - | chr1_2:54510341-54510360 | Msa0077520:intron | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | + | chr1_2:54510390-54510409 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | - | chr1_2:54510389-54510408 | Msa0077520:intron | 25.0% |
| ! | AATATGGAAATAATGGAGAG+AGG | + | chr1_2:54509143-54509162 | None:intergenic | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | - | chr1_2:54509408-54509427 | Msa0077520:CDS | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | - | chr1_2:54509413-54509432 | Msa0077520:CDS | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | - | chr1_2:54509613-54509632 | Msa0077520:intron | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | - | chr1_2:54509621-54509640 | Msa0077520:intron | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | - | chr1_2:54509734-54509753 | Msa0077520:CDS | 30.0% | |
| ATATGAAGAGACAAGTAGAA+TGG | - | chr1_2:54509930-54509949 | Msa0077520:intron | 30.0% | |
| TATGAAGAGACAAGTAGAAT+GGG | - | chr1_2:54509931-54509950 | Msa0077520:intron | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | - | chr1_2:54510097-54510116 | Msa0077520:CDS | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | - | chr1_2:54510348-54510367 | Msa0077520:intron | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | - | chr1_2:54510349-54510368 | Msa0077520:intron | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | - | chr1_2:54510482-54510501 | Msa0077520:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | + | chr1_2:54510491-54510510 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | - | chr1_2:54510527-54510546 | Msa0077520:intron | 30.0% | |
| ! | AATATGGAAATAATGGAGAG+AGG | + | chr1_2:54509143-54509162 | None:intergenic | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | - | chr1_2:54509408-54509427 | Msa0077520:CDS | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | - | chr1_2:54509413-54509432 | Msa0077520:CDS | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | - | chr1_2:54509613-54509632 | Msa0077520:intron | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | - | chr1_2:54509621-54509640 | Msa0077520:intron | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | - | chr1_2:54509734-54509753 | Msa0077520:CDS | 30.0% | |
| ATATGAAGAGACAAGTAGAA+TGG | - | chr1_2:54509930-54509949 | Msa0077520:intron | 30.0% | |
| TATGAAGAGACAAGTAGAAT+GGG | - | chr1_2:54509931-54509950 | Msa0077520:intron | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | - | chr1_2:54510097-54510116 | Msa0077520:CDS | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | - | chr1_2:54510348-54510367 | Msa0077520:intron | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | - | chr1_2:54510349-54510368 | Msa0077520:intron | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | - | chr1_2:54510482-54510501 | Msa0077520:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | + | chr1_2:54510491-54510510 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | - | chr1_2:54510527-54510546 | Msa0077520:intron | 30.0% | |
| CTTCAGACACTATAGATCAA+TGG | - | chr1_2:54509277-54509296 | Msa0077520:intron | 35.0% | |
| ACTACATCACTGACATATGT+TGG | + | chr1_2:54509315-54509334 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | - | chr1_2:54509421-54509440 | Msa0077520:CDS | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | - | chr1_2:54509430-54509449 | Msa0077520:CDS | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | - | chr1_2:54509450-54509469 | Msa0077520:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | - | chr1_2:54509454-54509473 | Msa0077520:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | + | chr1_2:54509522-54509541 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | - | chr1_2:54509521-54509540 | Msa0077520:intron | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | - | chr1_2:54509546-54509565 | Msa0077520:intron | 35.0% | |
| GAAATAGGATTGCATGTACT+TGG | + | chr1_2:54509679-54509698 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | + | chr1_2:54509694-54509713 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | - | chr1_2:54509719-54509738 | Msa0077520:CDS | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | - | chr1_2:54509839-54509858 | Msa0077520:CDS | 35.0% | |
| TAGGCTCAAATATGGAGAAA+AGG | - | chr1_2:54509847-54509866 | Msa0077520:CDS | 35.0% | |
| ATGATGAAGAGAGCTTATCT+TGG | - | chr1_2:54509877-54509896 | Msa0077520:intron | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | - | chr1_2:54509958-54509977 | Msa0077520:intron | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | - | chr1_2:54510015-54510034 | Msa0077520:intron | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | - | chr1_2:54510020-54510039 | Msa0077520:CDS | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | + | chr1_2:54510068-54510087 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | - | chr1_2:54510067-54510086 | Msa0077520:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | - | chr1_2:54510112-54510131 | Msa0077520:CDS | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | + | chr1_2:54510116-54510135 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | - | chr1_2:54510242-54510261 | Msa0077520:CDS | 35.0% | |
| CTTCAGACACTATAGATCAA+TGG | - | chr1_2:54509277-54509296 | Msa0077520:intron | 35.0% | |
| ACTACATCACTGACATATGT+TGG | + | chr1_2:54509315-54509334 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | - | chr1_2:54509421-54509440 | Msa0077520:CDS | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | - | chr1_2:54509430-54509449 | Msa0077520:CDS | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | - | chr1_2:54509450-54509469 | Msa0077520:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | - | chr1_2:54509454-54509473 | Msa0077520:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | + | chr1_2:54509522-54509541 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | - | chr1_2:54509521-54509540 | Msa0077520:intron | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | - | chr1_2:54509546-54509565 | Msa0077520:intron | 35.0% | |
| GAAATAGGATTGCATGTACT+TGG | + | chr1_2:54509679-54509698 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | + | chr1_2:54509694-54509713 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | - | chr1_2:54509719-54509738 | Msa0077520:CDS | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | - | chr1_2:54509839-54509858 | Msa0077520:CDS | 35.0% | |
| TAGGCTCAAATATGGAGAAA+AGG | - | chr1_2:54509847-54509866 | Msa0077520:CDS | 35.0% | |
| ATGATGAAGAGAGCTTATCT+TGG | - | chr1_2:54509877-54509896 | Msa0077520:intron | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | - | chr1_2:54509958-54509977 | Msa0077520:intron | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | - | chr1_2:54510015-54510034 | Msa0077520:intron | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | - | chr1_2:54510020-54510039 | Msa0077520:CDS | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | + | chr1_2:54510068-54510087 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | - | chr1_2:54510067-54510086 | Msa0077520:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | - | chr1_2:54510112-54510131 | Msa0077520:CDS | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | + | chr1_2:54510116-54510135 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | - | chr1_2:54510242-54510261 | Msa0077520:CDS | 35.0% | |
| ACATCTTCATCTCAAGCTCA+AGG | - | chr1_2:54509106-54509125 | Msa0077520:CDS | 40.0% | |
| GCTTCTATTTAGCGTCTGTT+TGG | - | chr1_2:54509180-54509199 | Msa0077520:CDS | 40.0% | |
| ATCTAGTGGCTATTTGAGAG+AGG | - | chr1_2:54509221-54509240 | Msa0077520:intron | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | - | chr1_2:54509463-54509482 | Msa0077520:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | - | chr1_2:54509524-54509543 | Msa0077520:intron | 40.0% | |
| CTCAGACTTTGATTCAGTTG+TGG | - | chr1_2:54509578-54509597 | Msa0077520:intron | 40.0% | |
| TGTGGTACAAAGAGAGCAAA+TGG | - | chr1_2:54509596-54509615 | Msa0077520:intron | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | - | chr1_2:54509642-54509661 | Msa0077520:CDS | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | + | chr1_2:54509706-54509725 | None:intergenic | 40.0% | |
| ! | AGAGAGCTTATCTTGGTGTA+AGG | - | chr1_2:54509884-54509903 | Msa0077520:intron | 40.0% |
| ! | GAGAGCTTATCTTGGTGTAA+GGG | - | chr1_2:54509885-54509904 | Msa0077520:intron | 40.0% |
| ! | AATGGGTTCAGCATCTGTTA+TGG | - | chr1_2:54509948-54509967 | Msa0077520:intron | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | - | chr1_2:54510087-54510106 | Msa0077520:CDS | 40.0% |
| ACATCTTCATCTCAAGCTCA+AGG | - | chr1_2:54509106-54509125 | Msa0077520:CDS | 40.0% | |
| GCTTCTATTTAGCGTCTGTT+TGG | - | chr1_2:54509180-54509199 | Msa0077520:CDS | 40.0% | |
| ATCTAGTGGCTATTTGAGAG+AGG | - | chr1_2:54509221-54509240 | Msa0077520:intron | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | - | chr1_2:54509463-54509482 | Msa0077520:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | - | chr1_2:54509524-54509543 | Msa0077520:intron | 40.0% | |
| CTCAGACTTTGATTCAGTTG+TGG | - | chr1_2:54509578-54509597 | Msa0077520:intron | 40.0% | |
| TGTGGTACAAAGAGAGCAAA+TGG | - | chr1_2:54509596-54509615 | Msa0077520:intron | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | - | chr1_2:54509642-54509661 | Msa0077520:CDS | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | + | chr1_2:54509706-54509725 | None:intergenic | 40.0% | |
| ! | AGAGAGCTTATCTTGGTGTA+AGG | - | chr1_2:54509884-54509903 | Msa0077520:intron | 40.0% |
| ! | GAGAGCTTATCTTGGTGTAA+GGG | - | chr1_2:54509885-54509904 | Msa0077520:intron | 40.0% |
| ! | AATGGGTTCAGCATCTGTTA+TGG | - | chr1_2:54509948-54509967 | Msa0077520:intron | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | - | chr1_2:54510087-54510106 | Msa0077520:CDS | 40.0% |
| CTACGTATCAGTGTCGTGTT+TGG | - | chr1_2:54509368-54509387 | Msa0077520:CDS | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | + | chr1_2:54509495-54509514 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | + | chr1_2:54509507-54509526 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | - | chr1_2:54509510-54509529 | Msa0077520:intron | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | - | chr1_2:54509650-54509669 | Msa0077520:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | + | chr1_2:54509657-54509676 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | - | chr1_2:54509698-54509717 | Msa0077520:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | + | chr1_2:54510079-54510098 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | - | chr1_2:54510352-54510371 | Msa0077520:intron | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | + | chr1_2:54510555-54510574 | None:intergenic | 45.0% | |
| CTACGTATCAGTGTCGTGTT+TGG | - | chr1_2:54509368-54509387 | Msa0077520:CDS | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | + | chr1_2:54509495-54509514 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | + | chr1_2:54509507-54509526 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | - | chr1_2:54509510-54509529 | Msa0077520:intron | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | - | chr1_2:54509650-54509669 | Msa0077520:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | + | chr1_2:54509657-54509676 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | - | chr1_2:54509698-54509717 | Msa0077520:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | + | chr1_2:54510079-54510098 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | - | chr1_2:54510352-54510371 | Msa0077520:intron | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | + | chr1_2:54510555-54510574 | None:intergenic | 45.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | - | chr1_2:54509490-54509509 | Msa0077520:intron | 50.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | - | chr1_2:54509490-54509509 | Msa0077520:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54509095 | 54510641 | 54509095 | ID=Msa0077520;Name=Msa0077520 |
| chr1_2 | mRNA | 54509095 | 54510641 | 54509095 | ID=Msa0077520-mRNA-1;Parent=Msa0077520;Name=Msa0077520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.25|0|1|1|1|5|0|278 |
| chr1_2 | exon | 54510609 | 54510641 | 54510609 | ID=Msa0077520-mRNA-1:exon:16924;Parent=Msa0077520-mRNA-1 |
| chr1_2 | exon | 54510017 | 54510301 | 54510017 | ID=Msa0077520-mRNA-1:exon:16923;Parent=Msa0077520-mRNA-1 |
| chr1_2 | exon | 54509628 | 54509886 | 54509628 | ID=Msa0077520-mRNA-1:exon:16922;Parent=Msa0077520-mRNA-1 |
| chr1_2 | exon | 54509363 | 54509484 | 54509363 | ID=Msa0077520-mRNA-1:exon:16921;Parent=Msa0077520-mRNA-1 |
| chr1_2 | exon | 54509095 | 54509232 | 54509095 | ID=Msa0077520-mRNA-1:exon:16920;Parent=Msa0077520-mRNA-1 |
| chr1_2 | CDS | 54510609 | 54510641 | 54510609 | ID=Msa0077520-mRNA-1:cds;Parent=Msa0077520-mRNA-1 |
| chr1_2 | CDS | 54510017 | 54510301 | 54510017 | ID=Msa0077520-mRNA-1:cds;Parent=Msa0077520-mRNA-1 |
| chr1_2 | CDS | 54509628 | 54509886 | 54509628 | ID=Msa0077520-mRNA-1:cds;Parent=Msa0077520-mRNA-1 |
| chr1_2 | CDS | 54509363 | 54509484 | 54509363 | ID=Msa0077520-mRNA-1:cds;Parent=Msa0077520-mRNA-1 |
| chr1_2 | CDS | 54509095 | 54509232 | 54509095 | ID=Msa0077520-mRNA-1:cds;Parent=Msa0077520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
