Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088500 | XP_013468718.1 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088500 | sp|Q9LW60|P2C44_ARATH | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 4.35e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088500 | A0A072VXE0 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa1088500 | 0.824325 | 8.578745e-54 | -8.615850e-47 |
| Msa0077520 | Msa1088500 | 0.840920 | 6.503457e-58 | -8.615850e-47 |
| Msa0832950 | Msa1088500 | 0.808164 | 3.543659e-50 | -8.615850e-47 |
| Msa1088500 | Msa1366190 | 0.984001 | 2.615199e-159 | -8.615850e-47 |
| Msa1088500 | Msa1387400 | 0.949084 | 2.598674e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088500 | MtrunA17_Chr1g0187481 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Msa1088500 | MtrunA17_Chr1g0166481 | 60.791 | 278 | 105 | 1 | 1 | 278 | 1 | 274 | 3.07e-121 | 347 |
| Msa1088500 | MtrunA17_Chr8g0360351 | 34.766 | 256 | 141 | 6 | 41 | 277 | 33 | 281 | 5.29e-38 | 135 |
| Msa1088500 | MtrunA17_Chr2g0317021 | 34.630 | 257 | 140 | 8 | 41 | 277 | 84 | 332 | 2.46e-37 | 134 |
| Msa1088500 | MtrunA17_Chr4g0050381 | 32.830 | 265 | 152 | 6 | 32 | 277 | 19 | 276 | 7.10e-37 | 132 |
| Msa1088500 | MtrunA17_Chr2g0279151 | 32.117 | 274 | 160 | 6 | 23 | 277 | 14 | 280 | 1.37e-35 | 129 |
| Msa1088500 | MtrunA17_Chr5g0426141 | 33.186 | 226 | 130 | 4 | 71 | 277 | 58 | 281 | 1.65e-33 | 123 |
| Msa1088500 | MtrunA17_Chr3g0115851 | 30.189 | 265 | 159 | 6 | 32 | 277 | 24 | 281 | 5.12e-32 | 119 |
| Msa1088500 | MtrunA17_Chr4g0051661 | 31.373 | 255 | 148 | 5 | 42 | 277 | 151 | 397 | 2.15e-30 | 117 |
| Msa1088500 | MtrunA17_Chr1g0150451 | 29.767 | 215 | 134 | 4 | 80 | 277 | 109 | 323 | 3.43e-27 | 107 |
| Msa1088500 | MtrunA17_Chr3g0136711 | 28.889 | 225 | 143 | 4 | 70 | 277 | 56 | 280 | 1.18e-26 | 105 |
| Msa1088500 | MtrunA17_Chr1g0212961 | 26.106 | 226 | 144 | 5 | 71 | 278 | 118 | 338 | 5.81e-21 | 90.9 |
| Msa1088500 | MtrunA17_Chr3g0126511 | 26.407 | 231 | 149 | 4 | 67 | 278 | 113 | 341 | 5.23e-20 | 88.6 |
| Msa1088500 | MtrunA17_Chr2g0293811 | 22.511 | 231 | 144 | 7 | 79 | 275 | 100 | 329 | 4.25e-14 | 71.6 |
| Msa1088500 | MtrunA17_Chr1g0171571 | 23.770 | 244 | 152 | 9 | 63 | 275 | 402 | 642 | 1.34e-12 | 67.8 |
| Msa1088500 | MtrunA17_Chr5g0430481 | 24.348 | 230 | 144 | 6 | 74 | 277 | 149 | 374 | 5.74e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088500 | AT3G23360.1 | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 4.43e-86 | 258 |
| Msa1088500 | AT2G20630.1 | 36.719 | 256 | 136 | 7 | 41 | 277 | 30 | 278 | 4.88e-42 | 145 |
| Msa1088500 | AT4G28400.1 | 34.182 | 275 | 154 | 7 | 22 | 277 | 16 | 282 | 8.00e-42 | 145 |
| Msa1088500 | AT4G28400.3 | 35.156 | 256 | 140 | 6 | 41 | 277 | 12 | 260 | 1.99e-41 | 144 |
| Msa1088500 | AT2G20630.2 | 36.328 | 256 | 137 | 7 | 41 | 277 | 30 | 278 | 9.83e-40 | 140 |
| Msa1088500 | AT3G15260.2 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.28e-38 | 135 |
| Msa1088500 | AT3G15260.1 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.28e-38 | 135 |
| Msa1088500 | AT1G78200.1 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1088500 | AT1G78200.3 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1088500 | AT1G78200.2 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1088500 | AT1G78200.5 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 4.59e-32 | 119 |
| Msa1088500 | AT1G78200.4 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 4.59e-32 | 119 |
| Msa1088500 | AT1G22280.1 | 34.389 | 221 | 124 | 5 | 76 | 277 | 62 | 280 | 1.38e-31 | 118 |
| Msa1088500 | AT1G22280.3 | 33.480 | 227 | 124 | 6 | 76 | 277 | 62 | 286 | 4.78e-29 | 112 |
| Msa1088500 | AT2G34740.1 | 31.128 | 257 | 145 | 8 | 43 | 277 | 88 | 334 | 4.80e-29 | 113 |
| Msa1088500 | AT1G34750.2 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1088500 | AT1G34750.1 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1088500 | AT1G34750.3 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1088500 | AT5G24940.1 | 28.000 | 225 | 145 | 4 | 70 | 277 | 55 | 279 | 8.94e-28 | 111 |
| Msa1088500 | AT4G31750.2 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.68e-27 | 108 |
| Msa1088500 | AT4G31750.1 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.85e-27 | 108 |
| Msa1088500 | AT4G31750.3 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.85e-27 | 108 |
| Msa1088500 | AT5G10740.1 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 4.75e-26 | 105 |
| Msa1088500 | AT5G10740.2 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 4.75e-26 | 105 |
| Msa1088500 | AT4G28400.2 | 31.466 | 232 | 132 | 7 | 22 | 234 | 16 | 239 | 1.45e-24 | 99.4 |
| Msa1088500 | AT5G53140.1 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 2.27e-22 | 96.3 |
| Msa1088500 | AT5G53140.2 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 2.27e-22 | 96.3 |
| Msa1088500 | AT1G43900.1 | 28.054 | 221 | 133 | 7 | 79 | 278 | 154 | 369 | 1.11e-19 | 88.2 |
| Msa1088500 | AT2G34740.3 | 29.439 | 214 | 119 | 8 | 43 | 234 | 84 | 287 | 3.52e-18 | 83.2 |
| Msa1088500 | AT2G34740.2 | 29.439 | 214 | 119 | 8 | 43 | 234 | 102 | 305 | 4.74e-18 | 82.8 |
| Msa1088500 | AT1G34750.4 | 26.768 | 198 | 110 | 5 | 71 | 243 | 58 | 245 | 1.66e-12 | 66.2 |
| Msa1088500 | AT3G62260.3 | 24.370 | 238 | 136 | 8 | 79 | 277 | 27 | 259 | 1.90e-12 | 66.6 |
| Msa1088500 | AT3G62260.2 | 24.370 | 238 | 136 | 8 | 79 | 277 | 117 | 349 | 2.82e-12 | 66.6 |
| Msa1088500 | AT3G62260.1 | 24.370 | 238 | 136 | 8 | 79 | 277 | 116 | 348 | 3.03e-12 | 66.6 |
| Msa1088500 | AT3G17250.1 | 22.892 | 249 | 133 | 8 | 77 | 277 | 156 | 393 | 5.61e-12 | 65.9 |
| Msa1088500 | AT1G67820.1 | 24.272 | 206 | 119 | 6 | 79 | 255 | 151 | 348 | 4.22e-11 | 63.2 |
| Msa1088500 | AT1G67820.2 | 24.272 | 206 | 119 | 6 | 79 | 255 | 115 | 312 | 5.03e-11 | 63.2 |
| Msa1088500 | AT1G07430.1 | 24.413 | 213 | 129 | 7 | 64 | 244 | 142 | 354 | 8.78e-11 | 62.4 |
| Msa1088500 | AT2G40860.4 | 23.684 | 228 | 137 | 9 | 80 | 275 | 326 | 548 | 9.55e-11 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAGAATTGTGGTATTT+TGG | 0.097610 | 7_3:+1738304 | Msa1088500:CDS |
| AAGCTTCTTGGCAAAGAAAT+AGG | 0.232943 | 7_3:-1738374 | None:intergenic |
| ACTGATTTGGATAGGCATTT+AGG | 0.245640 | 7_3:+1738104 | Msa1088500:intron |
| TATTAGCAAGCAATGGAATA+TGG | 0.286328 | 7_3:+1739033 | Msa1088500:CDS |
| AGGTTTCTGCTAAGATTTCT+AGG | 0.286598 | 7_3:+1738133 | Msa1088500:CDS |
| AAGTACCTCTTGAAGCTTCT+TGG | 0.293980 | 7_3:-1738386 | None:intergenic |
| TTGCTTCTTAGGCTCAAATA+TGG | 0.302832 | 7_3:+1738524 | Msa1088500:intron |
| ATCCATGAAGGCTTCTTTGC+TGG | 0.309411 | 7_3:-1738175 | None:intergenic |
| TGCCAGCAAAGAAGCCTTCA+TGG | 0.323868 | 7_3:+1738173 | Msa1088500:CDS |
| TCTGCGAGACCAATGTCTTT+TGG | 0.333774 | 7_3:-1738761 | None:intergenic |
| ACTTGATAACCATGTGTTAC+TGG | 0.374072 | 7_3:-1738202 | None:intergenic |
| CTCATACTAGCATATGAATC+AGG | 0.417446 | 7_3:+1738927 | Msa1088500:intron |
| GGAATCTTTGATCCACTAGT+TGG | 0.418980 | 7_3:+1738325 | Msa1088500:CDS |
| AAACTTGTAATAGCTAATAT+AGG | 0.427407 | 7_3:+1738670 | Msa1088500:CDS |
| GATAGGCATTTAGGTTAAGA+AGG | 0.441378 | 7_3:+1738113 | Msa1088500:intron |
| AGAGTTGTTGTGTGTAAAGA+TGG | 0.457279 | 7_3:+1738700 | Msa1088500:CDS |
| AAGCATTCAGCTGCTTCTTG+TGG | 0.465061 | 7_3:-1739237 | None:intergenic |
| AGAGAGCTTATCTAGGTGTA+AGG | 0.468644 | 7_3:+1738569 | Msa1088500:CDS |
| GAAATAGGATTGCATGTACT+TGG | 0.468860 | 7_3:-1738359 | None:intergenic |
| AATGGGTTCAGCATCTGTTA+TGG | 0.471322 | 7_3:+1738633 | Msa1088500:CDS |
| TGTGGTACAGAGAGAGCAAA+TGG | 0.489817 | 7_3:+1738279 | Msa1088500:CDS |
| ATTAGCAAGCAATGGAATAT+GGG | 0.490449 | 7_3:+1739034 | Msa1088500:CDS |
| GCATCTGTTATGGTAATCAA+TGG | 0.512835 | 7_3:+1738643 | Msa1088500:CDS |
| ATATGAAGAGACATGTAGAA+TGG | 0.525176 | 7_3:+1738615 | Msa1088500:CDS |
| TATGAAGAGACATGTAGAAT+GGG | 0.525258 | 7_3:+1738616 | Msa1088500:CDS |
| TTCTGCTAAGATTTCTAGGA+AGG | 0.531817 | 7_3:+1738137 | Msa1088500:CDS |
| ATGATGAAGAGAGCTTATCT+AGG | 0.538679 | 7_3:+1738562 | Msa1088500:CDS |
| GAGCATCATATGATCAAAGA+TGG | 0.545831 | 7_3:+1738229 | Msa1088500:CDS |
| GATTTCTAGGAAGGAAGAGA+AGG | 0.572846 | 7_3:+1738146 | Msa1088500:CDS |
| GTAACCTTGTCTCCAACTAG+TGG | 0.574542 | 7_3:-1738337 | None:intergenic |
| CTTTGCCAAGAAGCTTCAAG+AGG | 0.579098 | 7_3:+1738381 | Msa1088500:CDS |
| ACATCTTCATCTCAAGCTCA+AGG | 0.592522 | 7_3:+1737804 | Msa1088500:CDS |
| AACAATCAGCCAAAAGACAT+TGG | 0.594173 | 7_3:+1738752 | Msa1088500:CDS |
| GAGAGCTTATCTAGGTGTAA+GGG | 0.596332 | 7_3:+1738570 | Msa1088500:CDS |
| TGATCCACTAGTTGGAGACA+AGG | 0.603169 | 7_3:+1738333 | Msa1088500:CDS |
| TGTTGTGTGTAAAGATGGAA+TGG | 0.605621 | 7_3:+1738705 | Msa1088500:CDS |
| GAATCTAATAAGTCACATAG+AGG | 0.614445 | 7_3:+1739212 | Msa1088500:CDS |
| AAATGGATCAAACAGAATTG+TGG | 0.616235 | 7_3:+1738296 | Msa1088500:CDS |
| AACACATGGTTATCAAGTGG+TGG | 0.632461 | 7_3:+1738207 | Msa1088500:CDS |
| GTTACTGGTGTCATCCATGA+AGG | 0.634278 | 7_3:-1738187 | None:intergenic |
| AGCAAGCAATGGAATATGGG+AGG | 0.652311 | 7_3:+1739037 | Msa1088500:CDS |
| AGTAACACATGGTTATCAAG+TGG | 0.665524 | 7_3:+1738204 | Msa1088500:CDS |
| TGGATGACACCAGTAACACA+TGG | 0.713236 | 7_3:+1738193 | Msa1088500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAACAAAATATATTA+TGG | - | chr7_3:1738864-1738883 | None:intergenic | 10.0% |
| !! | AACATTAACAAAATATATTA+TGG | - | chr7_3:1738864-1738883 | None:intergenic | 10.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | - | chr7_3:1737848-1737867 | None:intergenic | 20.0% |
| !!! | TTTACTTATTTGAGTTTATC+TGG | + | chr7_3:1737886-1737905 | Msa1088500:intron | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | - | chr7_3:1738465-1738484 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | + | chr7_3:1738513-1738532 | Msa1088500:intron | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | + | chr7_3:1738670-1738689 | Msa1088500:CDS | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | + | chr7_3:1738883-1738902 | Msa1088500:intron | 20.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | - | chr7_3:1737848-1737867 | None:intergenic | 20.0% |
| !!! | TTTACTTATTTGAGTTTATC+TGG | + | chr7_3:1737886-1737905 | Msa1088500:intron | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | - | chr7_3:1738465-1738484 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | + | chr7_3:1738513-1738532 | Msa1088500:intron | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | + | chr7_3:1738670-1738689 | Msa1088500:CDS | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | + | chr7_3:1738883-1738902 | Msa1088500:intron | 20.0% |
| ! | ACGCTAAATGTAATGTAATA+TGG | - | chr7_3:1737857-1737876 | None:intergenic | 25.0% |
| ! | ACTATGCTTCCTTTAAATAT+TGG | + | chr7_3:1738453-1738472 | Msa1088500:intron | 25.0% |
| ! | TCTTTGGATTTATAAGACTT+TGG | + | chr7_3:1738813-1738832 | Msa1088500:intron | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | + | chr7_3:1739026-1739045 | Msa1088500:CDS | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | - | chr7_3:1739075-1739094 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | + | chr7_3:1739074-1739093 | Msa1088500:intron | 25.0% |
| ! | ACGCTAAATGTAATGTAATA+TGG | - | chr7_3:1737857-1737876 | None:intergenic | 25.0% |
| ! | ACTATGCTTCCTTTAAATAT+TGG | + | chr7_3:1738453-1738472 | Msa1088500:intron | 25.0% |
| ! | TCTTTGGATTTATAAGACTT+TGG | + | chr7_3:1738813-1738832 | Msa1088500:intron | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | + | chr7_3:1739026-1739045 | Msa1088500:CDS | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | - | chr7_3:1739075-1739094 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | + | chr7_3:1739074-1739093 | Msa1088500:intron | 25.0% |
| ! | AATATGGAAATAATGGAGAG+AGG | - | chr7_3:1737841-1737860 | None:intergenic | 30.0% |
| ! | ACTTATTTGAGTTTATCTGG+TGG | + | chr7_3:1737889-1737908 | Msa1088500:intron | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | + | chr7_3:1738091-1738110 | Msa1088500:intron | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | + | chr7_3:1738096-1738115 | Msa1088500:intron | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | + | chr7_3:1738296-1738315 | Msa1088500:CDS | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | + | chr7_3:1738304-1738323 | Msa1088500:CDS | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | + | chr7_3:1738417-1738436 | Msa1088500:intron | 30.0% | |
| ATATGAAGAGACATGTAGAA+TGG | + | chr7_3:1738615-1738634 | Msa1088500:CDS | 30.0% | |
| TATGAAGAGACATGTAGAAT+GGG | + | chr7_3:1738616-1738635 | Msa1088500:CDS | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | + | chr7_3:1738782-1738801 | Msa1088500:intron | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | + | chr7_3:1739033-1739052 | Msa1088500:CDS | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | + | chr7_3:1739034-1739053 | Msa1088500:CDS | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | + | chr7_3:1739167-1739186 | Msa1088500:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | - | chr7_3:1739176-1739195 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | + | chr7_3:1739212-1739231 | Msa1088500:CDS | 30.0% | |
| ! | AATATGGAAATAATGGAGAG+AGG | - | chr7_3:1737841-1737860 | None:intergenic | 30.0% |
| ! | ACTTATTTGAGTTTATCTGG+TGG | + | chr7_3:1737889-1737908 | Msa1088500:intron | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | + | chr7_3:1738091-1738110 | Msa1088500:intron | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | + | chr7_3:1738096-1738115 | Msa1088500:intron | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | + | chr7_3:1738296-1738315 | Msa1088500:CDS | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | + | chr7_3:1738304-1738323 | Msa1088500:CDS | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | + | chr7_3:1738417-1738436 | Msa1088500:intron | 30.0% | |
| ATATGAAGAGACATGTAGAA+TGG | + | chr7_3:1738615-1738634 | Msa1088500:CDS | 30.0% | |
| TATGAAGAGACATGTAGAAT+GGG | + | chr7_3:1738616-1738635 | Msa1088500:CDS | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | + | chr7_3:1738782-1738801 | Msa1088500:intron | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | + | chr7_3:1739033-1739052 | Msa1088500:CDS | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | + | chr7_3:1739034-1739053 | Msa1088500:CDS | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | + | chr7_3:1739167-1739186 | Msa1088500:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | - | chr7_3:1739176-1739195 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | + | chr7_3:1739212-1739231 | Msa1088500:CDS | 30.0% | |
| CTTCAGACACTATAGATCAA+TGG | + | chr7_3:1737959-1737978 | Msa1088500:intron | 35.0% | |
| CTACATCTACTGACATATGT+TGG | - | chr7_3:1737997-1738016 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | + | chr7_3:1738104-1738123 | Msa1088500:intron | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | + | chr7_3:1738113-1738132 | Msa1088500:intron | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | + | chr7_3:1738133-1738152 | Msa1088500:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | + | chr7_3:1738137-1738156 | Msa1088500:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | - | chr7_3:1738205-1738224 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | + | chr7_3:1738204-1738223 | Msa1088500:CDS | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | + | chr7_3:1738229-1738248 | Msa1088500:CDS | 35.0% | |
| !!! | CTCAGATTTTGATTCAGTTG+TGG | + | chr7_3:1738261-1738280 | Msa1088500:CDS | 35.0% |
| GAAATAGGATTGCATGTACT+TGG | - | chr7_3:1738362-1738381 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | - | chr7_3:1738377-1738396 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | + | chr7_3:1738402-1738421 | Msa1088500:intron | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | + | chr7_3:1738524-1738543 | Msa1088500:intron | 35.0% | |
| ATGATGAAGAGAGCTTATCT+AGG | + | chr7_3:1738562-1738581 | Msa1088500:CDS | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | + | chr7_3:1738643-1738662 | Msa1088500:CDS | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | + | chr7_3:1738700-1738719 | Msa1088500:CDS | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | + | chr7_3:1738705-1738724 | Msa1088500:CDS | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | - | chr7_3:1738753-1738772 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | + | chr7_3:1738752-1738771 | Msa1088500:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | + | chr7_3:1738797-1738816 | Msa1088500:intron | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | - | chr7_3:1738801-1738820 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | + | chr7_3:1738927-1738946 | Msa1088500:intron | 35.0% | |
| CTTCAGACACTATAGATCAA+TGG | + | chr7_3:1737959-1737978 | Msa1088500:intron | 35.0% | |
| CTACATCTACTGACATATGT+TGG | - | chr7_3:1737997-1738016 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | + | chr7_3:1738104-1738123 | Msa1088500:intron | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | + | chr7_3:1738113-1738132 | Msa1088500:intron | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | + | chr7_3:1738133-1738152 | Msa1088500:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | + | chr7_3:1738137-1738156 | Msa1088500:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | - | chr7_3:1738205-1738224 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | + | chr7_3:1738204-1738223 | Msa1088500:CDS | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | + | chr7_3:1738229-1738248 | Msa1088500:CDS | 35.0% | |
| !!! | CTCAGATTTTGATTCAGTTG+TGG | + | chr7_3:1738261-1738280 | Msa1088500:CDS | 35.0% |
| GAAATAGGATTGCATGTACT+TGG | - | chr7_3:1738362-1738381 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | - | chr7_3:1738377-1738396 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | + | chr7_3:1738402-1738421 | Msa1088500:intron | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | + | chr7_3:1738524-1738543 | Msa1088500:intron | 35.0% | |
| ATGATGAAGAGAGCTTATCT+AGG | + | chr7_3:1738562-1738581 | Msa1088500:CDS | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | + | chr7_3:1738643-1738662 | Msa1088500:CDS | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | + | chr7_3:1738700-1738719 | Msa1088500:CDS | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | + | chr7_3:1738705-1738724 | Msa1088500:CDS | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | - | chr7_3:1738753-1738772 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | + | chr7_3:1738752-1738771 | Msa1088500:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | + | chr7_3:1738797-1738816 | Msa1088500:intron | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | - | chr7_3:1738801-1738820 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | + | chr7_3:1738927-1738946 | Msa1088500:intron | 35.0% | |
| ACATCTTCATCTCAAGCTCA+AGG | + | chr7_3:1737804-1737823 | Msa1088500:CDS | 40.0% | |
| CATTACATTTAGCGTCTGTC+TGG | + | chr7_3:1737862-1737881 | Msa1088500:intron | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | + | chr7_3:1738146-1738165 | Msa1088500:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | + | chr7_3:1738207-1738226 | Msa1088500:CDS | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | + | chr7_3:1738325-1738344 | Msa1088500:CDS | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | - | chr7_3:1738389-1738408 | None:intergenic | 40.0% | |
| AGAGAGCTTATCTAGGTGTA+AGG | + | chr7_3:1738569-1738588 | Msa1088500:CDS | 40.0% | |
| GAGAGCTTATCTAGGTGTAA+GGG | + | chr7_3:1738570-1738589 | Msa1088500:CDS | 40.0% | |
| ! | AATGGGTTCAGCATCTGTTA+TGG | + | chr7_3:1738633-1738652 | Msa1088500:CDS | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | + | chr7_3:1738772-1738791 | Msa1088500:CDS | 40.0% |
| ACATCTTCATCTCAAGCTCA+AGG | + | chr7_3:1737804-1737823 | Msa1088500:CDS | 40.0% | |
| CATTACATTTAGCGTCTGTC+TGG | + | chr7_3:1737862-1737881 | Msa1088500:intron | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | + | chr7_3:1738146-1738165 | Msa1088500:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | + | chr7_3:1738207-1738226 | Msa1088500:CDS | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | + | chr7_3:1738325-1738344 | Msa1088500:CDS | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | - | chr7_3:1738389-1738408 | None:intergenic | 40.0% | |
| AGAGAGCTTATCTAGGTGTA+AGG | + | chr7_3:1738569-1738588 | Msa1088500:CDS | 40.0% | |
| GAGAGCTTATCTAGGTGTAA+GGG | + | chr7_3:1738570-1738589 | Msa1088500:CDS | 40.0% | |
| ! | AATGGGTTCAGCATCTGTTA+TGG | + | chr7_3:1738633-1738652 | Msa1088500:CDS | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | + | chr7_3:1738772-1738791 | Msa1088500:CDS | 40.0% |
| ATCTGGTGGCTATTTGAGAG+AGG | + | chr7_3:1737903-1737922 | Msa1088500:intron | 45.0% | |
| CTACGTATCAGTGTCGTGTT+TGG | + | chr7_3:1738051-1738070 | Msa1088500:intron | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | - | chr7_3:1738178-1738197 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | - | chr7_3:1738190-1738209 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | + | chr7_3:1738193-1738212 | Msa1088500:CDS | 45.0% | |
| TGTGGTACAGAGAGAGCAAA+TGG | + | chr7_3:1738279-1738298 | Msa1088500:CDS | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | + | chr7_3:1738333-1738352 | Msa1088500:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | - | chr7_3:1738340-1738359 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | + | chr7_3:1738381-1738400 | Msa1088500:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | - | chr7_3:1738764-1738783 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | + | chr7_3:1739037-1739056 | Msa1088500:CDS | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | - | chr7_3:1739240-1739259 | None:intergenic | 45.0% | |
| ATCTGGTGGCTATTTGAGAG+AGG | + | chr7_3:1737903-1737922 | Msa1088500:intron | 45.0% | |
| CTACGTATCAGTGTCGTGTT+TGG | + | chr7_3:1738051-1738070 | Msa1088500:intron | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | - | chr7_3:1738178-1738197 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | - | chr7_3:1738190-1738209 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | + | chr7_3:1738193-1738212 | Msa1088500:CDS | 45.0% | |
| TGTGGTACAGAGAGAGCAAA+TGG | + | chr7_3:1738279-1738298 | Msa1088500:CDS | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | + | chr7_3:1738333-1738352 | Msa1088500:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | - | chr7_3:1738340-1738359 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | + | chr7_3:1738381-1738400 | Msa1088500:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | - | chr7_3:1738764-1738783 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | + | chr7_3:1739037-1739056 | Msa1088500:CDS | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | - | chr7_3:1739240-1739259 | None:intergenic | 45.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | + | chr7_3:1738173-1738192 | Msa1088500:CDS | 50.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | + | chr7_3:1738173-1738192 | Msa1088500:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1737793 | 1739326 | 1737793 | ID=Msa1088500;Name=Msa1088500 |
| chr7_3 | mRNA | 1737793 | 1739326 | 1737793 | ID=Msa1088500-mRNA-1;Parent=Msa1088500;Name=Msa1088500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.25|0|1|1|1|5|0|278 |
| chr7_3 | exon | 1737793 | 1737825 | 1737793 | ID=Msa1088500-mRNA-1:exon:654;Parent=Msa1088500-mRNA-1 |
| chr7_3 | exon | 1738118 | 1738402 | 1738118 | ID=Msa1088500-mRNA-1:exon:655;Parent=Msa1088500-mRNA-1 |
| chr7_3 | exon | 1738535 | 1738793 | 1738535 | ID=Msa1088500-mRNA-1:exon:656;Parent=Msa1088500-mRNA-1 |
| chr7_3 | exon | 1738937 | 1739058 | 1738937 | ID=Msa1088500-mRNA-1:exon:657;Parent=Msa1088500-mRNA-1 |
| chr7_3 | exon | 1739189 | 1739326 | 1739189 | ID=Msa1088500-mRNA-1:exon:658;Parent=Msa1088500-mRNA-1 |
| chr7_3 | CDS | 1737793 | 1737825 | 1737793 | ID=Msa1088500-mRNA-1:cds;Parent=Msa1088500-mRNA-1 |
| chr7_3 | CDS | 1738118 | 1738402 | 1738118 | ID=Msa1088500-mRNA-1:cds;Parent=Msa1088500-mRNA-1 |
| chr7_3 | CDS | 1738535 | 1738793 | 1738535 | ID=Msa1088500-mRNA-1:cds;Parent=Msa1088500-mRNA-1 |
| chr7_3 | CDS | 1738937 | 1739058 | 1738937 | ID=Msa1088500-mRNA-1:cds;Parent=Msa1088500-mRNA-1 |
| chr7_3 | CDS | 1739189 | 1739326 | 1739189 | ID=Msa1088500-mRNA-1:cds;Parent=Msa1088500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
