Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387400 | XP_013468718.1 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387400 | sp|Q9LW60|P2C44_ARATH | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 4.35e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387400 | A0A072VXE0 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa1387400 | 0.807927 | 3.978589e-50 | -8.615850e-47 |
| Msa0077520 | Msa1387400 | 0.867903 | 9.710949e-66 | -8.615850e-47 |
| Msa1366190 | Msa1387400 | 0.938091 | 1.191286e-98 | -8.615850e-47 |
| Msa0832950 | Msa1387400 | 0.808654 | 2.785406e-50 | -8.615850e-47 |
| Msa1088500 | Msa1387400 | 0.949084 | 2.598674e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387400 | MtrunA17_Chr1g0187481 | 99.640 | 278 | 1 | 0 | 1 | 278 | 1 | 278 | 0.0 | 582 |
| Msa1387400 | MtrunA17_Chr1g0166481 | 60.791 | 278 | 105 | 1 | 1 | 278 | 1 | 274 | 3.07e-121 | 347 |
| Msa1387400 | MtrunA17_Chr8g0360351 | 34.766 | 256 | 141 | 6 | 41 | 277 | 33 | 281 | 5.29e-38 | 135 |
| Msa1387400 | MtrunA17_Chr2g0317021 | 34.630 | 257 | 140 | 8 | 41 | 277 | 84 | 332 | 2.46e-37 | 134 |
| Msa1387400 | MtrunA17_Chr4g0050381 | 32.830 | 265 | 152 | 6 | 32 | 277 | 19 | 276 | 7.10e-37 | 132 |
| Msa1387400 | MtrunA17_Chr2g0279151 | 32.117 | 274 | 160 | 6 | 23 | 277 | 14 | 280 | 1.37e-35 | 129 |
| Msa1387400 | MtrunA17_Chr5g0426141 | 33.186 | 226 | 130 | 4 | 71 | 277 | 58 | 281 | 1.65e-33 | 123 |
| Msa1387400 | MtrunA17_Chr3g0115851 | 30.189 | 265 | 159 | 6 | 32 | 277 | 24 | 281 | 5.12e-32 | 119 |
| Msa1387400 | MtrunA17_Chr4g0051661 | 31.373 | 255 | 148 | 5 | 42 | 277 | 151 | 397 | 2.15e-30 | 117 |
| Msa1387400 | MtrunA17_Chr1g0150451 | 29.767 | 215 | 134 | 4 | 80 | 277 | 109 | 323 | 3.43e-27 | 107 |
| Msa1387400 | MtrunA17_Chr3g0136711 | 28.889 | 225 | 143 | 4 | 70 | 277 | 56 | 280 | 1.18e-26 | 105 |
| Msa1387400 | MtrunA17_Chr1g0212961 | 26.106 | 226 | 144 | 5 | 71 | 278 | 118 | 338 | 5.81e-21 | 90.9 |
| Msa1387400 | MtrunA17_Chr3g0126511 | 26.407 | 231 | 149 | 4 | 67 | 278 | 113 | 341 | 5.23e-20 | 88.6 |
| Msa1387400 | MtrunA17_Chr2g0293811 | 22.511 | 231 | 144 | 7 | 79 | 275 | 100 | 329 | 4.25e-14 | 71.6 |
| Msa1387400 | MtrunA17_Chr1g0171571 | 23.770 | 244 | 152 | 9 | 63 | 275 | 402 | 642 | 1.34e-12 | 67.8 |
| Msa1387400 | MtrunA17_Chr5g0430481 | 24.348 | 230 | 144 | 6 | 74 | 277 | 149 | 374 | 5.74e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387400 | AT3G23360.1 | 50.000 | 278 | 119 | 5 | 1 | 277 | 1 | 259 | 4.43e-86 | 258 |
| Msa1387400 | AT2G20630.1 | 36.719 | 256 | 136 | 7 | 41 | 277 | 30 | 278 | 4.88e-42 | 145 |
| Msa1387400 | AT4G28400.1 | 34.182 | 275 | 154 | 7 | 22 | 277 | 16 | 282 | 8.00e-42 | 145 |
| Msa1387400 | AT4G28400.3 | 35.156 | 256 | 140 | 6 | 41 | 277 | 12 | 260 | 1.99e-41 | 144 |
| Msa1387400 | AT2G20630.2 | 36.328 | 256 | 137 | 7 | 41 | 277 | 30 | 278 | 9.83e-40 | 140 |
| Msa1387400 | AT3G15260.2 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.28e-38 | 135 |
| Msa1387400 | AT3G15260.1 | 32.319 | 263 | 152 | 6 | 34 | 277 | 33 | 288 | 7.28e-38 | 135 |
| Msa1387400 | AT1G78200.1 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1387400 | AT1G78200.3 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1387400 | AT1G78200.2 | 33.468 | 248 | 141 | 5 | 52 | 277 | 37 | 282 | 1.43e-32 | 121 |
| Msa1387400 | AT1G78200.5 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 4.59e-32 | 119 |
| Msa1387400 | AT1G78200.4 | 33.333 | 234 | 132 | 5 | 66 | 277 | 6 | 237 | 4.59e-32 | 119 |
| Msa1387400 | AT1G22280.1 | 34.389 | 221 | 124 | 5 | 76 | 277 | 62 | 280 | 1.38e-31 | 118 |
| Msa1387400 | AT1G22280.3 | 33.480 | 227 | 124 | 6 | 76 | 277 | 62 | 286 | 4.78e-29 | 112 |
| Msa1387400 | AT2G34740.1 | 31.128 | 257 | 145 | 8 | 43 | 277 | 88 | 334 | 4.80e-29 | 113 |
| Msa1387400 | AT1G34750.2 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1387400 | AT1G34750.1 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1387400 | AT1G34750.3 | 31.034 | 232 | 127 | 4 | 71 | 277 | 58 | 281 | 1.76e-28 | 110 |
| Msa1387400 | AT5G24940.1 | 28.000 | 225 | 145 | 4 | 70 | 277 | 55 | 279 | 8.94e-28 | 111 |
| Msa1387400 | AT4G31750.2 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.68e-27 | 108 |
| Msa1387400 | AT4G31750.1 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.85e-27 | 108 |
| Msa1387400 | AT4G31750.3 | 29.767 | 215 | 134 | 4 | 80 | 277 | 65 | 279 | 1.85e-27 | 108 |
| Msa1387400 | AT5G10740.1 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 4.75e-26 | 105 |
| Msa1387400 | AT5G10740.2 | 27.982 | 218 | 140 | 4 | 77 | 277 | 62 | 279 | 4.75e-26 | 105 |
| Msa1387400 | AT4G28400.2 | 31.466 | 232 | 132 | 7 | 22 | 234 | 16 | 239 | 1.45e-24 | 99.4 |
| Msa1387400 | AT5G53140.1 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 2.27e-22 | 96.3 |
| Msa1387400 | AT5G53140.2 | 28.571 | 217 | 134 | 4 | 80 | 277 | 133 | 347 | 2.27e-22 | 96.3 |
| Msa1387400 | AT1G43900.1 | 28.054 | 221 | 133 | 7 | 79 | 278 | 154 | 369 | 1.11e-19 | 88.2 |
| Msa1387400 | AT2G34740.3 | 29.439 | 214 | 119 | 8 | 43 | 234 | 84 | 287 | 3.52e-18 | 83.2 |
| Msa1387400 | AT2G34740.2 | 29.439 | 214 | 119 | 8 | 43 | 234 | 102 | 305 | 4.74e-18 | 82.8 |
| Msa1387400 | AT1G34750.4 | 26.768 | 198 | 110 | 5 | 71 | 243 | 58 | 245 | 1.66e-12 | 66.2 |
| Msa1387400 | AT3G62260.3 | 24.370 | 238 | 136 | 8 | 79 | 277 | 27 | 259 | 1.90e-12 | 66.6 |
| Msa1387400 | AT3G62260.2 | 24.370 | 238 | 136 | 8 | 79 | 277 | 117 | 349 | 2.82e-12 | 66.6 |
| Msa1387400 | AT3G62260.1 | 24.370 | 238 | 136 | 8 | 79 | 277 | 116 | 348 | 3.03e-12 | 66.6 |
| Msa1387400 | AT3G17250.1 | 22.892 | 249 | 133 | 8 | 77 | 277 | 156 | 393 | 5.61e-12 | 65.9 |
| Msa1387400 | AT1G67820.1 | 24.272 | 206 | 119 | 6 | 79 | 255 | 151 | 348 | 4.22e-11 | 63.2 |
| Msa1387400 | AT1G67820.2 | 24.272 | 206 | 119 | 6 | 79 | 255 | 115 | 312 | 5.03e-11 | 63.2 |
| Msa1387400 | AT1G07430.1 | 24.413 | 213 | 129 | 7 | 64 | 244 | 142 | 354 | 8.78e-11 | 62.4 |
| Msa1387400 | AT2G40860.4 | 23.684 | 228 | 137 | 9 | 80 | 275 | 326 | 548 | 9.55e-11 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAGAATTGTGGTATTT+TGG | 0.097610 | tig0020886:-19790 | Msa1387400:CDS |
| AAGCTTCTTGGCAAAGAAAT+AGG | 0.232943 | tig0020886:+19720 | None:intergenic |
| ACTGATTTGGATAGGCATTT+AGG | 0.245640 | tig0020886:-19990 | Msa1387400:intron |
| TATTAGCAAGCAATGGAATA+TGG | 0.286328 | tig0020886:-19061 | Msa1387400:CDS |
| AGGTTTCTGCTAAGATTTCT+AGG | 0.286598 | tig0020886:-19961 | Msa1387400:CDS |
| AAGTACCTCTTGAAGCTTCT+TGG | 0.293980 | tig0020886:+19708 | None:intergenic |
| TTGCTTCTTAGGCTCAAATA+TGG | 0.302832 | tig0020886:-19570 | Msa1387400:intron |
| ATCCATGAAGGCTTCTTTGC+TGG | 0.309411 | tig0020886:+19919 | None:intergenic |
| TGCCAGCAAAGAAGCCTTCA+TGG | 0.323868 | tig0020886:-19921 | Msa1387400:CDS |
| TCTGCGAGACCAATGTCTTT+TGG | 0.333774 | tig0020886:+19333 | None:intergenic |
| ACTTGATAACCATGTGTTAC+TGG | 0.374072 | tig0020886:+19892 | None:intergenic |
| CTCATACTAGCATATGAATC+AGG | 0.417446 | tig0020886:-19167 | Msa1387400:intron |
| GGAATCTTTGATCCACTAGT+TGG | 0.418980 | tig0020886:-19769 | Msa1387400:CDS |
| AAACTTGTAATAGCTAATAT+AGG | 0.427407 | tig0020886:-19424 | Msa1387400:CDS |
| GATAGGCATTTAGGTTAAGA+AGG | 0.441378 | tig0020886:-19981 | Msa1387400:intron |
| AGAGTTGTTGTGTGTAAAGA+TGG | 0.457279 | tig0020886:-19394 | Msa1387400:CDS |
| AAGCATTCAGCTGCTTCTTG+TGG | 0.465061 | tig0020886:+18857 | None:intergenic |
| AGAGAGCTTATCTAGGTGTA+AGG | 0.468644 | tig0020886:-19525 | Msa1387400:CDS |
| GAAATAGGATTGCATGTACT+TGG | 0.468860 | tig0020886:+19735 | None:intergenic |
| AATGGGTTCAGCATCTGTTA+TGG | 0.471322 | tig0020886:-19461 | Msa1387400:CDS |
| TGTGGTACAGAGAGAGCAAA+TGG | 0.489817 | tig0020886:-19815 | Msa1387400:CDS |
| ATTAGCAAGCAATGGAATAT+GGG | 0.490449 | tig0020886:-19060 | Msa1387400:CDS |
| GCATCTGTTATGGTAATCAA+TGG | 0.512835 | tig0020886:-19451 | Msa1387400:CDS |
| ATATGAAGAGACATGTAGAA+TGG | 0.525176 | tig0020886:-19479 | Msa1387400:CDS |
| TATGAAGAGACATGTAGAAT+GGG | 0.525258 | tig0020886:-19478 | Msa1387400:CDS |
| TTCTGCTAAGATTTCTAGGA+AGG | 0.531817 | tig0020886:-19957 | Msa1387400:CDS |
| ATGATGAAGAGAGCTTATCT+AGG | 0.538679 | tig0020886:-19532 | Msa1387400:CDS |
| GAGCATCATATGATCAAAGA+TGG | 0.545831 | tig0020886:-19865 | Msa1387400:CDS |
| GATTTCTAGGAAGGAAGAGA+AGG | 0.572846 | tig0020886:-19948 | Msa1387400:CDS |
| GTAACCTTGTCTCCAACTAG+TGG | 0.574542 | tig0020886:+19757 | None:intergenic |
| CTTTGCCAAGAAGCTTCAAG+AGG | 0.579098 | tig0020886:-19713 | Msa1387400:intron |
| ACATCTTCATCTCAAGCTCA+AGG | 0.592522 | tig0020886:-20290 | Msa1387400:intron |
| AACAATCAGCCAAAAGACAT+TGG | 0.594173 | tig0020886:-19342 | Msa1387400:CDS |
| GAGAGCTTATCTAGGTGTAA+GGG | 0.596332 | tig0020886:-19524 | Msa1387400:CDS |
| TGATCCACTAGTTGGAGACA+AGG | 0.603169 | tig0020886:-19761 | Msa1387400:CDS |
| TGTTGTGTGTAAAGATGGAA+TGG | 0.605621 | tig0020886:-19389 | Msa1387400:CDS |
| GAATCTAATAAGTCACATAG+AGG | 0.614445 | tig0020886:-18882 | Msa1387400:CDS |
| AAATGGATCAAACAGAATTG+TGG | 0.616235 | tig0020886:-19798 | Msa1387400:CDS |
| AACACATGGTTATCAAGTGG+TGG | 0.632461 | tig0020886:-19887 | Msa1387400:CDS |
| GTTACTGGTGTCATCCATGA+AGG | 0.634278 | tig0020886:+19907 | None:intergenic |
| AGCAAGCAATGGAATATGGG+AGG | 0.652311 | tig0020886:-19057 | Msa1387400:intron |
| AGTAACACATGGTTATCAAG+TGG | 0.665524 | tig0020886:-19890 | Msa1387400:CDS |
| TGGATGACACCAGTAACACA+TGG | 0.713236 | tig0020886:-19901 | Msa1387400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAACAAAATATATTA+TGG | + | tig0020886:19861-19880 | None:intergenic | 10.0% |
| !! | AACATTAACAAAATATATTA+TGG | + | tig0020886:19861-19880 | None:intergenic | 10.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | + | tig0020886:18845-18864 | None:intergenic | 20.0% |
| !!! | TTTACTTATTTGAGTTTATC+TGG | - | tig0020886:18883-18902 | Msa1387400:CDS | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | + | tig0020886:19462-19481 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | - | tig0020886:19510-19529 | Msa1387400:CDS | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | - | tig0020886:19667-19686 | Msa1387400:intron | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | - | tig0020886:19880-19899 | Msa1387400:CDS | 20.0% |
| !! | GTAATGTAATATGGAAATAA+TGG | + | tig0020886:18845-18864 | None:intergenic | 20.0% |
| !!! | TTTACTTATTTGAGTTTATC+TGG | - | tig0020886:18883-18902 | Msa1387400:CDS | 20.0% |
| !! | ATAAAGTGACCAATATTTAA+AGG | + | tig0020886:19462-19481 | None:intergenic | 20.0% |
| !! | ATCATAATTTATTGCTTCTT+AGG | - | tig0020886:19510-19529 | Msa1387400:CDS | 20.0% |
| !! | AAACTTGTAATAGCTAATAT+AGG | - | tig0020886:19667-19686 | Msa1387400:intron | 20.0% |
| !!! | TTTTGTTGTTCATCAATAAA+TGG | - | tig0020886:19880-19899 | Msa1387400:CDS | 20.0% |
| ! | ACGCTAAATGTAATGTAATA+TGG | + | tig0020886:18854-18873 | None:intergenic | 25.0% |
| ! | ACTATGCTTCCTTTAAATAT+TGG | - | tig0020886:19450-19469 | Msa1387400:CDS | 25.0% |
| ! | TCTTTGGATTTATTAGACTT+TGG | - | tig0020886:19810-19829 | Msa1387400:CDS | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | - | tig0020886:20023-20042 | Msa1387400:intron | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | + | tig0020886:20072-20091 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | - | tig0020886:20071-20090 | Msa1387400:intron | 25.0% |
| ! | ACGCTAAATGTAATGTAATA+TGG | + | tig0020886:18854-18873 | None:intergenic | 25.0% |
| ! | ACTATGCTTCCTTTAAATAT+TGG | - | tig0020886:19450-19469 | Msa1387400:CDS | 25.0% |
| ! | TCTTTGGATTTATTAGACTT+TGG | - | tig0020886:19810-19829 | Msa1387400:CDS | 25.0% |
| !! | TTTTTGATATTAGCAAGCAA+TGG | - | tig0020886:20023-20042 | Msa1387400:intron | 25.0% |
| ! | AAAAATGAATGCTACTCTAA+TGG | + | tig0020886:20072-20091 | None:intergenic | 25.0% |
| !! | ATTAGAGTAGCATTCATTTT+TGG | - | tig0020886:20071-20090 | Msa1387400:intron | 25.0% |
| ! | AATATGGAAATAATGGAGAG+AGG | + | tig0020886:18838-18857 | None:intergenic | 30.0% |
| ! | ACTTATTTGAGTTTATCTGG+TGG | - | tig0020886:18886-18905 | Msa1387400:CDS | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | - | tig0020886:19088-19107 | Msa1387400:CDS | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | - | tig0020886:19093-19112 | Msa1387400:CDS | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | - | tig0020886:19293-19312 | Msa1387400:intron | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | - | tig0020886:19301-19320 | Msa1387400:intron | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | - | tig0020886:19414-19433 | Msa1387400:CDS | 30.0% | |
| ATATGAAGAGACATGTAGAA+TGG | - | tig0020886:19612-19631 | Msa1387400:intron | 30.0% | |
| TATGAAGAGACATGTAGAAT+GGG | - | tig0020886:19613-19632 | Msa1387400:intron | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | - | tig0020886:19779-19798 | Msa1387400:CDS | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | - | tig0020886:20030-20049 | Msa1387400:intron | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | - | tig0020886:20031-20050 | Msa1387400:intron | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | - | tig0020886:20164-20183 | Msa1387400:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | + | tig0020886:20173-20192 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | - | tig0020886:20209-20228 | Msa1387400:intron | 30.0% | |
| ! | AATATGGAAATAATGGAGAG+AGG | + | tig0020886:18838-18857 | None:intergenic | 30.0% |
| ! | ACTTATTTGAGTTTATCTGG+TGG | - | tig0020886:18886-18905 | Msa1387400:CDS | 30.0% |
| ! | AGCTAATCTAACTACTGATT+TGG | - | tig0020886:19088-19107 | Msa1387400:CDS | 30.0% |
| !! | ATCTAACTACTGATTTGGAT+AGG | - | tig0020886:19093-19112 | Msa1387400:CDS | 30.0% |
| AAATGGATCAAACAGAATTG+TGG | - | tig0020886:19293-19312 | Msa1387400:intron | 30.0% | |
| ! | CAAACAGAATTGTGGTATTT+TGG | - | tig0020886:19301-19320 | Msa1387400:intron | 30.0% |
| CATGATGGTATTGCTAAAAA+TGG | - | tig0020886:19414-19433 | Msa1387400:CDS | 30.0% | |
| ATATGAAGAGACATGTAGAA+TGG | - | tig0020886:19612-19631 | Msa1387400:intron | 30.0% | |
| TATGAAGAGACATGTAGAAT+GGG | - | tig0020886:19613-19632 | Msa1387400:intron | 30.0% | |
| !!! | GAATATTTTCAGGTATCCAA+TGG | - | tig0020886:19779-19798 | Msa1387400:CDS | 30.0% |
| TATTAGCAAGCAATGGAATA+TGG | - | tig0020886:20030-20049 | Msa1387400:intron | 30.0% | |
| ATTAGCAAGCAATGGAATAT+GGG | - | tig0020886:20031-20050 | Msa1387400:intron | 30.0% | |
| GAATCTCCAAATATATGTGT+AGG | - | tig0020886:20164-20183 | Msa1387400:intron | 30.0% | |
| TCATCACCTACACATATATT+TGG | + | tig0020886:20173-20192 | None:intergenic | 30.0% | |
| GAATCTAATAAGTCACATAG+AGG | - | tig0020886:20209-20228 | Msa1387400:intron | 30.0% | |
| CTTCAGACACTATAGATCAA+TGG | - | tig0020886:18956-18975 | Msa1387400:intron | 35.0% | |
| CTACATCTACTGACATATGT+TGG | + | tig0020886:18994-19013 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | - | tig0020886:19101-19120 | Msa1387400:CDS | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | - | tig0020886:19110-19129 | Msa1387400:CDS | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | - | tig0020886:19130-19149 | Msa1387400:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | - | tig0020886:19134-19153 | Msa1387400:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | + | tig0020886:19202-19221 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | - | tig0020886:19201-19220 | Msa1387400:intron | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | - | tig0020886:19226-19245 | Msa1387400:intron | 35.0% | |
| !!! | CTCAGATTTTGATTCAGTTG+TGG | - | tig0020886:19258-19277 | Msa1387400:intron | 35.0% |
| GAAATAGGATTGCATGTACT+TGG | + | tig0020886:19359-19378 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | + | tig0020886:19374-19393 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | - | tig0020886:19399-19418 | Msa1387400:CDS | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | - | tig0020886:19521-19540 | Msa1387400:CDS | 35.0% | |
| ATGATGAAGAGAGCTTATCT+AGG | - | tig0020886:19559-19578 | Msa1387400:CDS | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | - | tig0020886:19640-19659 | Msa1387400:intron | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | - | tig0020886:19697-19716 | Msa1387400:intron | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | - | tig0020886:19702-19721 | Msa1387400:intron | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | + | tig0020886:19750-19769 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | - | tig0020886:19749-19768 | Msa1387400:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | - | tig0020886:19794-19813 | Msa1387400:CDS | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | + | tig0020886:19798-19817 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | - | tig0020886:19924-19943 | Msa1387400:CDS | 35.0% | |
| CTTCAGACACTATAGATCAA+TGG | - | tig0020886:18956-18975 | Msa1387400:intron | 35.0% | |
| CTACATCTACTGACATATGT+TGG | + | tig0020886:18994-19013 | None:intergenic | 35.0% | |
| !! | ACTGATTTGGATAGGCATTT+AGG | - | tig0020886:19101-19120 | Msa1387400:CDS | 35.0% |
| ! | GATAGGCATTTAGGTTAAGA+AGG | - | tig0020886:19110-19129 | Msa1387400:CDS | 35.0% |
| AGGTTTCTGCTAAGATTTCT+AGG | - | tig0020886:19130-19149 | Msa1387400:CDS | 35.0% | |
| ! | TTCTGCTAAGATTTCTAGGA+AGG | - | tig0020886:19134-19153 | Msa1387400:CDS | 35.0% |
| ! | ACTTGATAACCATGTGTTAC+TGG | + | tig0020886:19202-19221 | None:intergenic | 35.0% |
| AGTAACACATGGTTATCAAG+TGG | - | tig0020886:19201-19220 | Msa1387400:intron | 35.0% | |
| GAGCATCATATGATCAAAGA+TGG | - | tig0020886:19226-19245 | Msa1387400:intron | 35.0% | |
| !!! | CTCAGATTTTGATTCAGTTG+TGG | - | tig0020886:19258-19277 | Msa1387400:intron | 35.0% |
| GAAATAGGATTGCATGTACT+TGG | + | tig0020886:19359-19378 | None:intergenic | 35.0% | |
| AAGCTTCTTGGCAAAGAAAT+AGG | + | tig0020886:19374-19393 | None:intergenic | 35.0% | |
| GGTACTTTGAGTAAACATGA+TGG | - | tig0020886:19399-19418 | Msa1387400:CDS | 35.0% | |
| TTGCTTCTTAGGCTCAAATA+TGG | - | tig0020886:19521-19540 | Msa1387400:CDS | 35.0% | |
| ATGATGAAGAGAGCTTATCT+AGG | - | tig0020886:19559-19578 | Msa1387400:CDS | 35.0% | |
| GCATCTGTTATGGTAATCAA+TGG | - | tig0020886:19640-19659 | Msa1387400:intron | 35.0% | |
| AGAGTTGTTGTGTGTAAAGA+TGG | - | tig0020886:19697-19716 | Msa1387400:intron | 35.0% | |
| TGTTGTGTGTAAAGATGGAA+TGG | - | tig0020886:19702-19721 | Msa1387400:intron | 35.0% | |
| !! | AATGTCTTTTGGCTGATTGT+TGG | + | tig0020886:19750-19769 | None:intergenic | 35.0% |
| AACAATCAGCCAAAAGACAT+TGG | - | tig0020886:19749-19768 | Msa1387400:CDS | 35.0% | |
| TCCAATGGTAAACATGTCTT+TGG | - | tig0020886:19794-19813 | Msa1387400:CDS | 35.0% | |
| TCCAAAGACATGTTTACCAT+TGG | + | tig0020886:19798-19817 | None:intergenic | 35.0% | |
| CTCATACTAGCATATGAATC+AGG | - | tig0020886:19924-19943 | Msa1387400:CDS | 35.0% | |
| ACATCTTCATCTCAAGCTCA+AGG | - | tig0020886:18801-18820 | Msa1387400:CDS | 40.0% | |
| CATTACATTTAGCGTCTGTC+TGG | - | tig0020886:18859-18878 | Msa1387400:CDS | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | - | tig0020886:19143-19162 | Msa1387400:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | - | tig0020886:19204-19223 | Msa1387400:intron | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | - | tig0020886:19322-19341 | Msa1387400:intron | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | + | tig0020886:19386-19405 | None:intergenic | 40.0% | |
| AGAGAGCTTATCTAGGTGTA+AGG | - | tig0020886:19566-19585 | Msa1387400:intron | 40.0% | |
| GAGAGCTTATCTAGGTGTAA+GGG | - | tig0020886:19567-19586 | Msa1387400:intron | 40.0% | |
| ! | AATGGGTTCAGCATCTGTTA+TGG | - | tig0020886:19630-19649 | Msa1387400:intron | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | - | tig0020886:19769-19788 | Msa1387400:CDS | 40.0% |
| ACATCTTCATCTCAAGCTCA+AGG | - | tig0020886:18801-18820 | Msa1387400:CDS | 40.0% | |
| CATTACATTTAGCGTCTGTC+TGG | - | tig0020886:18859-18878 | Msa1387400:CDS | 40.0% | |
| ! | GATTTCTAGGAAGGAAGAGA+AGG | - | tig0020886:19143-19162 | Msa1387400:CDS | 40.0% |
| AACACATGGTTATCAAGTGG+TGG | - | tig0020886:19204-19223 | Msa1387400:intron | 40.0% | |
| GGAATCTTTGATCCACTAGT+TGG | - | tig0020886:19322-19341 | Msa1387400:intron | 40.0% | |
| AAGTACCTCTTGAAGCTTCT+TGG | + | tig0020886:19386-19405 | None:intergenic | 40.0% | |
| AGAGAGCTTATCTAGGTGTA+AGG | - | tig0020886:19566-19585 | Msa1387400:intron | 40.0% | |
| GAGAGCTTATCTAGGTGTAA+GGG | - | tig0020886:19567-19586 | Msa1387400:intron | 40.0% | |
| ! | AATGGGTTCAGCATCTGTTA+TGG | - | tig0020886:19630-19649 | Msa1387400:intron | 40.0% |
| ! | TGGTCTCGCAGAATATTTTC+AGG | - | tig0020886:19769-19788 | Msa1387400:CDS | 40.0% |
| ATCTGGTGGCTATTTGAGAG+AGG | - | tig0020886:18900-18919 | Msa1387400:CDS | 45.0% | |
| CTACGTATCAGTGTCGTGTT+TGG | - | tig0020886:19048-19067 | Msa1387400:intron | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | + | tig0020886:19175-19194 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | + | tig0020886:19187-19206 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | - | tig0020886:19190-19209 | Msa1387400:intron | 45.0% | |
| TGTGGTACAGAGAGAGCAAA+TGG | - | tig0020886:19276-19295 | Msa1387400:intron | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | - | tig0020886:19330-19349 | Msa1387400:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | + | tig0020886:19337-19356 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | - | tig0020886:19378-19397 | Msa1387400:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | + | tig0020886:19761-19780 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | - | tig0020886:20034-20053 | Msa1387400:intron | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | + | tig0020886:20237-20256 | None:intergenic | 45.0% | |
| ATCTGGTGGCTATTTGAGAG+AGG | - | tig0020886:18900-18919 | Msa1387400:CDS | 45.0% | |
| CTACGTATCAGTGTCGTGTT+TGG | - | tig0020886:19048-19067 | Msa1387400:intron | 45.0% | |
| ATCCATGAAGGCTTCTTTGC+TGG | + | tig0020886:19175-19194 | None:intergenic | 45.0% | |
| !! | GTTACTGGTGTCATCCATGA+AGG | + | tig0020886:19187-19206 | None:intergenic | 45.0% |
| TGGATGACACCAGTAACACA+TGG | - | tig0020886:19190-19209 | Msa1387400:intron | 45.0% | |
| TGTGGTACAGAGAGAGCAAA+TGG | - | tig0020886:19276-19295 | Msa1387400:intron | 45.0% | |
| TGATCCACTAGTTGGAGACA+AGG | - | tig0020886:19330-19349 | Msa1387400:CDS | 45.0% | |
| GTAACCTTGTCTCCAACTAG+TGG | + | tig0020886:19337-19356 | None:intergenic | 45.0% | |
| CTTTGCCAAGAAGCTTCAAG+AGG | - | tig0020886:19378-19397 | Msa1387400:CDS | 45.0% | |
| ! | TCTGCGAGACCAATGTCTTT+TGG | + | tig0020886:19761-19780 | None:intergenic | 45.0% |
| AGCAAGCAATGGAATATGGG+AGG | - | tig0020886:20034-20053 | Msa1387400:intron | 45.0% | |
| AAGCATTCAGCTGCTTCTTG+TGG | + | tig0020886:20237-20256 | None:intergenic | 45.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | - | tig0020886:19170-19189 | Msa1387400:intron | 50.0% | |
| TGCCAGCAAAGAAGCCTTCA+TGG | - | tig0020886:19170-19189 | Msa1387400:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020886 | gene | 18790 | 20323 | 18790 | ID=Msa1387400;Name=Msa1387400 |
| tig0020886 | mRNA | 18790 | 20323 | 18790 | ID=Msa1387400-mRNA-1;Parent=Msa1387400;Name=Msa1387400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.25|0|1|1|1|5|0|278 |
| tig0020886 | exon | 20291 | 20323 | 20291 | ID=Msa1387400-mRNA-1:exon:10612;Parent=Msa1387400-mRNA-1 |
| tig0020886 | exon | 19714 | 19998 | 19714 | ID=Msa1387400-mRNA-1:exon:10611;Parent=Msa1387400-mRNA-1 |
| tig0020886 | exon | 19323 | 19581 | 19323 | ID=Msa1387400-mRNA-1:exon:10610;Parent=Msa1387400-mRNA-1 |
| tig0020886 | exon | 19058 | 19179 | 19058 | ID=Msa1387400-mRNA-1:exon:10609;Parent=Msa1387400-mRNA-1 |
| tig0020886 | exon | 18790 | 18927 | 18790 | ID=Msa1387400-mRNA-1:exon:10608;Parent=Msa1387400-mRNA-1 |
| tig0020886 | CDS | 20291 | 20323 | 20291 | ID=Msa1387400-mRNA-1:cds;Parent=Msa1387400-mRNA-1 |
| tig0020886 | CDS | 19714 | 19998 | 19714 | ID=Msa1387400-mRNA-1:cds;Parent=Msa1387400-mRNA-1 |
| tig0020886 | CDS | 19323 | 19581 | 19323 | ID=Msa1387400-mRNA-1:cds;Parent=Msa1387400-mRNA-1 |
| tig0020886 | CDS | 19058 | 19179 | 19058 | ID=Msa1387400-mRNA-1:cds;Parent=Msa1387400-mRNA-1 |
| tig0020886 | CDS | 18790 | 18927 | 18790 | ID=Msa1387400-mRNA-1:cds;Parent=Msa1387400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
