Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078100 | XP_013468790.1 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 2.94e-159 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078100 | B7FH79 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 1.40e-159 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030720 | Msa0078100 | 0.850807 | 1.336909e-60 | -8.615850e-47 |
| Msa0078100 | Msa0879950 | 0.845600 | 3.671039e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078100 | MtrunA17_Chr1g0188241 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 2.70e-163 | 449 |
| Msa0078100 | MtrunA17_Chr6g0476521 | 70.742 | 229 | 58 | 5 | 1 | 226 | 1 | 223 | 2.63e-109 | 313 |
| Msa0078100 | MtrunA17_Chr6g0476511 | 68.860 | 228 | 62 | 5 | 1 | 226 | 1 | 221 | 1.50e-106 | 306 |
| Msa0078100 | MtrunA17_Chr4g0011081 | 49.776 | 223 | 104 | 4 | 1 | 223 | 1 | 215 | 1.45e-66 | 204 |
| Msa0078100 | MtrunA17_Chr7g0275631 | 35.065 | 231 | 121 | 9 | 4 | 216 | 3 | 222 | 3.47e-28 | 106 |
| Msa0078100 | MtrunA17_Chr4g0056901 | 30.973 | 226 | 136 | 7 | 4 | 215 | 5 | 224 | 2.70e-23 | 93.6 |
| Msa0078100 | MtrunA17_Chr4g0011241 | 28.512 | 242 | 128 | 10 | 4 | 215 | 5 | 231 | 1.74e-20 | 86.3 |
| Msa0078100 | MtrunA17_Chr5g0398711 | 26.087 | 230 | 148 | 8 | 3 | 215 | 54 | 278 | 9.97e-19 | 82.4 |
| Msa0078100 | MtrunA17_Chr5g0398721 | 28.448 | 232 | 138 | 12 | 4 | 215 | 8 | 231 | 3.85e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078100 | AT5G62280.1 | 54.894 | 235 | 93 | 7 | 1 | 224 | 1 | 233 | 3.58e-69 | 212 |
| Msa0078100 | AT2G45360.1 | 31.250 | 224 | 128 | 10 | 4 | 215 | 5 | 214 | 1.31e-24 | 97.1 |
| Msa0078100 | AT3G60780.1 | 28.761 | 226 | 134 | 10 | 4 | 215 | 5 | 217 | 2.88e-21 | 88.6 |
| Msa0078100 | AT1G12320.1 | 28.440 | 218 | 141 | 6 | 4 | 216 | 5 | 212 | 4.38e-14 | 68.9 |
| Msa0078100 | AT1G62840.1 | 29.060 | 234 | 129 | 10 | 4 | 215 | 5 | 223 | 4.81e-12 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCTAAAATAACCTTAA+AGG | 0.188791 | 1_2:-55399012 | Msa0078100:five_prime_UTR |
| TTCAGCTACATTTGGTTCTT+TGG | 0.195817 | 1_2:+55398766 | None:intergenic |
| TGGATGCAATAAGATCTTTA+TGG | 0.261093 | 1_2:+55398606 | None:intergenic |
| CAAGCCATAGTTCAGTTTCT+TGG | 0.268829 | 1_2:+55398978 | None:intergenic |
| CTATCTTAGCACTTTGAAAA+TGG | 0.284211 | 1_2:-55398928 | Msa0078100:intron |
| GCAATAAGATCTTTATGGTT+AGG | 0.336334 | 1_2:+55398611 | None:intergenic |
| GCCAATTGGAGAAGGGCTTT+TGG | 0.338994 | 1_2:-55398336 | Msa0078100:CDS |
| GATCTACTTGTTCCATATCT+TGG | 0.344912 | 1_2:+55398281 | None:intergenic |
| CAAGAGGGTAGAAATGTAAA+TGG | 0.345596 | 1_2:-55398437 | Msa0078100:CDS |
| TTCACATCAAGTCCAATTCA+TGG | 0.355274 | 1_2:-55398564 | Msa0078100:CDS |
| TAAAAGTCGTTGGGTTGTTA+AGG | 0.363789 | 1_2:-55398246 | Msa0078100:CDS |
| GATATAAATTCAGCTACATT+TGG | 0.368857 | 1_2:+55398758 | None:intergenic |
| AGCTCAAGAAGTGCTTCTAT+TGG | 0.369696 | 1_2:-55398534 | Msa0078100:CDS |
| GAGAATAATAGTCCAAGATA+TGG | 0.371871 | 1_2:-55398293 | Msa0078100:CDS |
| AGCAATTCCTAAGGCATGTT+TGG | 0.381874 | 1_2:+55398586 | None:intergenic |
| GATTTAGTTGCAAAGGATCT+TGG | 0.393832 | 1_2:-55398388 | Msa0078100:CDS |
| CGGGTGAGGAACATGTGTTT+AGG | 0.395191 | 1_2:-55398211 | Msa0078100:CDS |
| AAAACCAAGAAACTGAACTA+TGG | 0.413679 | 1_2:-55398982 | Msa0078100:exon |
| ACCAAAAGCCCTTCTCCAAT+TGG | 0.423738 | 1_2:+55398335 | None:intergenic |
| CAATAAGATCTTTATGGTTA+GGG | 0.439051 | 1_2:+55398612 | None:intergenic |
| ATTGCTGCTGCTAATCAAAC+TGG | 0.439338 | 1_2:-55398656 | Msa0078100:CDS |
| GGGTGAGGAACATGTGTTTA+GGG | 0.449763 | 1_2:-55398210 | Msa0078100:CDS |
| GAAACTGAACTATGGCTTGT+TGG | 0.450379 | 1_2:-55398974 | Msa0078100:exon |
| GGGAAAGATTAAAAGTCGTT+GGG | 0.463641 | 1_2:-55398255 | Msa0078100:CDS |
| ATTGCATCCAAACATGCCTT+AGG | 0.467318 | 1_2:-55398593 | Msa0078100:CDS |
| TGGGAAAGATTAAAAGTCGT+TGG | 0.470491 | 1_2:-55398256 | Msa0078100:CDS |
| TATGGAACAAGTAGATCAAT+GGG | 0.483840 | 1_2:-55398275 | Msa0078100:CDS |
| ATATGGAACAAGTAGATCAA+TGG | 0.502769 | 1_2:-55398276 | Msa0078100:CDS |
| TACAATGGATTTAGTTGCAA+AGG | 0.506221 | 1_2:-55398395 | Msa0078100:CDS |
| AGTGCTAAGATAGGCCTTTG+TGG | 0.521249 | 1_2:+55398938 | None:intergenic |
| CATCAAGTCCAATTCATGGT+TGG | 0.523861 | 1_2:-55398560 | Msa0078100:CDS |
| TTTATATCAGCACTAGCTGC+AGG | 0.541708 | 1_2:-55398743 | Msa0078100:CDS |
| TTAGGGTCAGATTTCCTCAC+GGG | 0.551431 | 1_2:-55398193 | Msa0078100:CDS |
| GGTTGATAAATGCACGGGTG+AGG | 0.561807 | 1_2:-55398225 | Msa0078100:CDS |
| ACAATTGTTGTGGGGTACAA+TGG | 0.562830 | 1_2:-55398410 | Msa0078100:CDS |
| AATGGTGGAACAATTGTTGT+GGG | 0.563879 | 1_2:-55398419 | Msa0078100:CDS |
| AGCAGCAATTAAAGCTAGTG+TGG | 0.570090 | 1_2:+55398670 | None:intergenic |
| GTTAAGGTTGATAAATGCAC+GGG | 0.574652 | 1_2:-55398230 | Msa0078100:CDS |
| TGTTAAGGTTGATAAATGCA+CGG | 0.583257 | 1_2:-55398231 | Msa0078100:CDS |
| TTGATGTGAAGCAATTCCTA+AGG | 0.600666 | 1_2:+55398577 | None:intergenic |
| GAGGGTAGAAATGTAAATGG+TGG | 0.603769 | 1_2:-55398434 | Msa0078100:CDS |
| GATTCTCAAAACAATTCAAG+AGG | 0.603978 | 1_2:-55398453 | Msa0078100:CDS |
| GTCTGCAGAAAATGCCACAA+AGG | 0.634425 | 1_2:-55398952 | Msa0078100:CDS |
| AAATGGTGGAACAATTGTTG+TGG | 0.637602 | 1_2:-55398420 | Msa0078100:CDS |
| TTTAGGGTCAGATTTCCTCA+CGG | 0.639337 | 1_2:-55398194 | Msa0078100:CDS |
| GCTTGAATAACTTTCCCGTG+AGG | 0.639541 | 1_2:+55398179 | None:intergenic |
| ATTCTCAAAACAATTCAAGA+GGG | 0.642069 | 1_2:-55398452 | Msa0078100:CDS |
| GCTGCTGCTAATCAAACTGG+TGG | 0.642077 | 1_2:-55398653 | Msa0078100:CDS |
| AAAGGATCTTGGTTATCATG+TGG | 0.648675 | 1_2:-55398377 | Msa0078100:CDS |
| ATGGTGGAACAATTGTTGTG+GGG | 0.755080 | 1_2:-55398418 | Msa0078100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAACATATTCAATAAGA+TGG | + | chr1_2:55398321-55398340 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTTATTTTCTTC+AGG | - | chr1_2:55398391-55398410 | Msa0078100:CDS | 20.0% |
| !!! | TTTTTGTGTTATTTTCTTCA+GGG | - | chr1_2:55398392-55398411 | Msa0078100:CDS | 20.0% |
| !! | TCTAAACATATTCAATAAGA+TGG | + | chr1_2:55398321-55398340 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTTATTTTCTTC+AGG | - | chr1_2:55398391-55398410 | Msa0078100:CDS | 20.0% |
| !!! | TTTTTGTGTTATTTTCTTCA+GGG | - | chr1_2:55398392-55398411 | Msa0078100:CDS | 20.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | + | chr1_2:55398181-55398200 | None:intergenic | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | + | chr1_2:55398434-55398453 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | + | chr1_2:55398580-55398599 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | - | chr1_2:55398737-55398756 | Msa0078100:CDS | 25.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | + | chr1_2:55398181-55398200 | None:intergenic | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | + | chr1_2:55398434-55398453 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | + | chr1_2:55398580-55398599 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | - | chr1_2:55398737-55398756 | Msa0078100:CDS | 25.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | - | chr1_2:55398177-55398196 | Msa0078100:CDS | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | + | chr1_2:55398194-55398213 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | + | chr1_2:55398205-55398224 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | - | chr1_2:55398207-55398226 | Msa0078100:CDS | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | + | chr1_2:55398263-55398282 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | - | chr1_2:55398261-55398280 | Msa0078100:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | + | chr1_2:55398581-55398600 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | + | chr1_2:55398586-55398605 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | + | chr1_2:55398682-55398701 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | - | chr1_2:55398736-55398755 | Msa0078100:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | - | chr1_2:55398794-55398813 | Msa0078100:intron | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | - | chr1_2:55398896-55398915 | Msa0078100:intron | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | - | chr1_2:55398913-55398932 | Msa0078100:intron | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | - | chr1_2:55398914-55398933 | Msa0078100:intron | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | - | chr1_2:55398958-55398977 | Msa0078100:CDS | 30.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | - | chr1_2:55398177-55398196 | Msa0078100:CDS | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | + | chr1_2:55398194-55398213 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | + | chr1_2:55398205-55398224 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | - | chr1_2:55398207-55398226 | Msa0078100:CDS | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | + | chr1_2:55398263-55398282 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | - | chr1_2:55398261-55398280 | Msa0078100:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | + | chr1_2:55398581-55398600 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | + | chr1_2:55398586-55398605 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | + | chr1_2:55398682-55398701 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | - | chr1_2:55398736-55398755 | Msa0078100:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | - | chr1_2:55398794-55398813 | Msa0078100:intron | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | - | chr1_2:55398896-55398915 | Msa0078100:intron | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | - | chr1_2:55398913-55398932 | Msa0078100:intron | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | - | chr1_2:55398914-55398933 | Msa0078100:intron | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | - | chr1_2:55398958-55398977 | Msa0078100:CDS | 30.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | + | chr1_2:55398426-55398445 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | + | chr1_2:55398615-55398634 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | - | chr1_2:55398625-55398644 | Msa0078100:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | - | chr1_2:55398752-55398771 | Msa0078100:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | - | chr1_2:55398769-55398788 | Msa0078100:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | - | chr1_2:55398770-55398789 | Msa0078100:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | - | chr1_2:55398801-55398820 | Msa0078100:intron | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | - | chr1_2:55398812-55398831 | Msa0078100:intron | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | - | chr1_2:55398839-55398858 | Msa0078100:intron | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | - | chr1_2:55398846-55398865 | Msa0078100:intron | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | + | chr1_2:55398911-55398930 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | - | chr1_2:55398933-55398952 | Msa0078100:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | - | chr1_2:55398934-55398953 | Msa0078100:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | - | chr1_2:55398943-55398962 | Msa0078100:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | - | chr1_2:55398959-55398978 | Msa0078100:CDS | 35.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | + | chr1_2:55398426-55398445 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | + | chr1_2:55398615-55398634 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | - | chr1_2:55398625-55398644 | Msa0078100:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | - | chr1_2:55398752-55398771 | Msa0078100:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | - | chr1_2:55398769-55398788 | Msa0078100:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | - | chr1_2:55398770-55398789 | Msa0078100:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | - | chr1_2:55398801-55398820 | Msa0078100:intron | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | - | chr1_2:55398812-55398831 | Msa0078100:intron | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | - | chr1_2:55398839-55398858 | Msa0078100:intron | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | - | chr1_2:55398846-55398865 | Msa0078100:intron | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | + | chr1_2:55398911-55398930 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | - | chr1_2:55398933-55398952 | Msa0078100:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | - | chr1_2:55398934-55398953 | Msa0078100:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | - | chr1_2:55398943-55398962 | Msa0078100:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | - | chr1_2:55398959-55398978 | Msa0078100:CDS | 35.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | + | chr1_2:55398214-55398233 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | - | chr1_2:55398215-55398234 | Msa0078100:CDS | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | - | chr1_2:55398446-55398465 | Msa0078100:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | + | chr1_2:55398522-55398541 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | - | chr1_2:55398533-55398552 | Msa0078100:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | - | chr1_2:55398596-55398615 | Msa0078100:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | + | chr1_2:55398606-55398625 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | - | chr1_2:55398629-55398648 | Msa0078100:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | + | chr1_2:55398640-55398659 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | - | chr1_2:55398655-55398674 | Msa0078100:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | - | chr1_2:55398755-55398774 | Msa0078100:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | - | chr1_2:55398771-55398790 | Msa0078100:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | - | chr1_2:55398779-55398798 | Msa0078100:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | - | chr1_2:55398845-55398864 | Msa0078100:intron | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | - | chr1_2:55398995-55399014 | Msa0078100:five_prime_UTR | 40.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | + | chr1_2:55398214-55398233 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | - | chr1_2:55398215-55398234 | Msa0078100:CDS | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | - | chr1_2:55398446-55398465 | Msa0078100:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | + | chr1_2:55398522-55398541 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | - | chr1_2:55398533-55398552 | Msa0078100:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | - | chr1_2:55398596-55398615 | Msa0078100:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | + | chr1_2:55398606-55398625 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | - | chr1_2:55398629-55398648 | Msa0078100:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | + | chr1_2:55398640-55398659 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | - | chr1_2:55398655-55398674 | Msa0078100:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | - | chr1_2:55398755-55398774 | Msa0078100:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | - | chr1_2:55398771-55398790 | Msa0078100:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | - | chr1_2:55398779-55398798 | Msa0078100:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | - | chr1_2:55398845-55398864 | Msa0078100:intron | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | - | chr1_2:55398995-55399014 | Msa0078100:five_prime_UTR | 40.0% |
| GTCTGCAGAAAATGCCACAA+AGG | - | chr1_2:55398237-55398256 | Msa0078100:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | + | chr1_2:55398254-55398273 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | + | chr1_2:55398857-55398876 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | - | chr1_2:55398866-55398885 | Msa0078100:intron | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | - | chr1_2:55398979-55398998 | Msa0078100:exon | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | - | chr1_2:55398996-55399015 | Msa0078100:five_prime_UTR | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | + | chr1_2:55399013-55399032 | None:intergenic | 45.0% | |
| GTCTGCAGAAAATGCCACAA+AGG | - | chr1_2:55398237-55398256 | Msa0078100:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | + | chr1_2:55398254-55398273 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | + | chr1_2:55398857-55398876 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | - | chr1_2:55398866-55398885 | Msa0078100:intron | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | - | chr1_2:55398979-55398998 | Msa0078100:exon | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | - | chr1_2:55398996-55399015 | Msa0078100:five_prime_UTR | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | + | chr1_2:55399013-55399032 | None:intergenic | 45.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | - | chr1_2:55398536-55398555 | Msa0078100:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | - | chr1_2:55398853-55398872 | Msa0078100:intron | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | - | chr1_2:55398964-55398983 | Msa0078100:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | - | chr1_2:55398978-55398997 | Msa0078100:exon | 50.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | - | chr1_2:55398536-55398555 | Msa0078100:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | - | chr1_2:55398853-55398872 | Msa0078100:intron | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | - | chr1_2:55398964-55398983 | Msa0078100:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | - | chr1_2:55398978-55398997 | Msa0078100:exon | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55398175 | 55399036 | 55398175 | ID=Msa0078100;Name=Msa0078100 |
| chr1_2 | mRNA | 55398175 | 55399036 | 55398175 | ID=Msa0078100-mRNA-1;Parent=Msa0078100;Name=Msa0078100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=51|1|0.5|1|1|1|2|0|226 |
| chr1_2 | exon | 55398175 | 55398798 | 55398175 | ID=Msa0078100-mRNA-1:exon:17249;Parent=Msa0078100-mRNA-1 |
| chr1_2 | exon | 55398929 | 55399036 | 55398929 | ID=Msa0078100-mRNA-1:exon:17248;Parent=Msa0078100-mRNA-1 |
| chr1_2 | five_prime_UTR | 55398986 | 55399036 | 55398986 | ID=Msa0078100-mRNA-1:five_prime_utr;Parent=Msa0078100-mRNA-1 |
| chr1_2 | CDS | 55398929 | 55398985 | 55398929 | ID=Msa0078100-mRNA-1:cds;Parent=Msa0078100-mRNA-1 |
| chr1_2 | CDS | 55398175 | 55398798 | 55398175 | ID=Msa0078100-mRNA-1:cds;Parent=Msa0078100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
