Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879950 | XP_013468790.1 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 2.94e-159 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879950 | B7FH79 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 1.40e-159 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030720 | Msa0879950 | 0.984707 | 2.383442e-161 | -8.615850e-47 |
| Msa0078100 | Msa0879950 | 0.845600 | 3.671039e-59 | -8.615850e-47 |
| Msa0638540 | Msa0879950 | 0.809267 | 2.058449e-50 | -8.615850e-47 |
| Msa0830180 | Msa0879950 | 0.810704 | 1.009616e-50 | -8.615850e-47 |
| Msa0171980 | Msa0879950 | 0.801057 | 1.077489e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879950 | MtrunA17_Chr1g0188241 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 2.70e-163 | 449 |
| Msa0879950 | MtrunA17_Chr6g0476521 | 70.742 | 229 | 58 | 5 | 1 | 226 | 1 | 223 | 2.63e-109 | 313 |
| Msa0879950 | MtrunA17_Chr6g0476511 | 68.860 | 228 | 62 | 5 | 1 | 226 | 1 | 221 | 1.50e-106 | 306 |
| Msa0879950 | MtrunA17_Chr4g0011081 | 49.776 | 223 | 104 | 4 | 1 | 223 | 1 | 215 | 1.45e-66 | 204 |
| Msa0879950 | MtrunA17_Chr7g0275631 | 35.065 | 231 | 121 | 9 | 4 | 216 | 3 | 222 | 3.47e-28 | 106 |
| Msa0879950 | MtrunA17_Chr4g0056901 | 30.973 | 226 | 136 | 7 | 4 | 215 | 5 | 224 | 2.70e-23 | 93.6 |
| Msa0879950 | MtrunA17_Chr4g0011241 | 28.512 | 242 | 128 | 10 | 4 | 215 | 5 | 231 | 1.74e-20 | 86.3 |
| Msa0879950 | MtrunA17_Chr5g0398711 | 26.087 | 230 | 148 | 8 | 3 | 215 | 54 | 278 | 9.97e-19 | 82.4 |
| Msa0879950 | MtrunA17_Chr5g0398721 | 28.448 | 232 | 138 | 12 | 4 | 215 | 8 | 231 | 3.85e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879950 | AT5G62280.1 | 54.894 | 235 | 93 | 7 | 1 | 224 | 1 | 233 | 3.58e-69 | 212 |
| Msa0879950 | AT2G45360.1 | 31.250 | 224 | 128 | 10 | 4 | 215 | 5 | 214 | 1.31e-24 | 97.1 |
| Msa0879950 | AT3G60780.1 | 28.761 | 226 | 134 | 10 | 4 | 215 | 5 | 217 | 2.88e-21 | 88.6 |
| Msa0879950 | AT1G12320.1 | 28.440 | 218 | 141 | 6 | 4 | 216 | 5 | 212 | 4.38e-14 | 68.9 |
| Msa0879950 | AT1G62840.1 | 29.060 | 234 | 129 | 10 | 4 | 215 | 5 | 223 | 4.81e-12 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCTAAAATAACCTTAA+AGG | 0.188791 | 6_1:+22866470 | Msa0879950:five_prime_UTR |
| TTCAGCTACATTTGGTTCTT+TGG | 0.195817 | 6_1:-22866714 | None:intergenic |
| TGGATGCAATAAGATCTTTA+TGG | 0.261093 | 6_1:-22866874 | None:intergenic |
| CAAGCCATAGTTCAGTTTCT+TGG | 0.268829 | 6_1:-22866504 | None:intergenic |
| CTATCTTAGCACTTTGAAAA+TGG | 0.284211 | 6_1:+22866554 | Msa0879950:CDS |
| GCAATAAGATCTTTATGGTT+AGG | 0.336334 | 6_1:-22866869 | None:intergenic |
| GCCAATTGGAGAAGGGCTTT+TGG | 0.338994 | 6_1:+22867144 | Msa0879950:CDS |
| GATCTACTTGTTCCATATCT+TGG | 0.344912 | 6_1:-22867199 | None:intergenic |
| CAAGAGGGTAGAAATGTAAA+TGG | 0.345596 | 6_1:+22867043 | Msa0879950:CDS |
| TTCACATCAAGTCCAATTCA+TGG | 0.355274 | 6_1:+22866916 | Msa0879950:CDS |
| TAAAAGTCGTTGGGTTGTTA+AGG | 0.363789 | 6_1:+22867234 | Msa0879950:CDS |
| GATATAAATTCAGCTACATT+TGG | 0.368857 | 6_1:-22866722 | None:intergenic |
| AGCTCAAGAAGTGCTTCTAT+TGG | 0.369696 | 6_1:+22866946 | Msa0879950:CDS |
| GAGAATAATAGTCCAAGATA+TGG | 0.371871 | 6_1:+22867187 | Msa0879950:CDS |
| AGCAATTCCTAAGGCATGTT+TGG | 0.381874 | 6_1:-22866894 | None:intergenic |
| GATTTAGTTGCAAAGGATCT+TGG | 0.393832 | 6_1:+22867092 | Msa0879950:CDS |
| CGGGTGAGGAACATGTGTTT+AGG | 0.395191 | 6_1:+22867269 | Msa0879950:CDS |
| AAAACCAAGAAACTGAACTA+TGG | 0.413679 | 6_1:+22866500 | Msa0879950:exon |
| ACCAAAAGCCCTTCTCCAAT+TGG | 0.423738 | 6_1:-22867145 | None:intergenic |
| CAATAAGATCTTTATGGTTA+GGG | 0.439051 | 6_1:-22866868 | None:intergenic |
| ATTGCTGCTGCTAATCAAAC+TGG | 0.439338 | 6_1:+22866824 | Msa0879950:CDS |
| GGGTGAGGAACATGTGTTTA+GGG | 0.449763 | 6_1:+22867270 | Msa0879950:CDS |
| GAAACTGAACTATGGCTTGT+TGG | 0.450379 | 6_1:+22866508 | Msa0879950:exon |
| GGGAAAGATTAAAAGTCGTT+GGG | 0.463641 | 6_1:+22867225 | Msa0879950:CDS |
| ATTGCATCCAAACATGCCTT+AGG | 0.467318 | 6_1:+22866887 | Msa0879950:CDS |
| TGGGAAAGATTAAAAGTCGT+TGG | 0.470491 | 6_1:+22867224 | Msa0879950:CDS |
| TATGGAACAAGTAGATCAAT+GGG | 0.483840 | 6_1:+22867205 | Msa0879950:CDS |
| ATATGGAACAAGTAGATCAA+TGG | 0.502769 | 6_1:+22867204 | Msa0879950:CDS |
| TACAATGGATTTAGTTGCAA+AGG | 0.506221 | 6_1:+22867085 | Msa0879950:CDS |
| AGTGCTAAGATAGGCCTTTG+TGG | 0.521249 | 6_1:-22866544 | None:intergenic |
| CATCAAGTCCAATTCATGGT+TGG | 0.523861 | 6_1:+22866920 | Msa0879950:CDS |
| TTTATATCAGCACTAGCTGC+AGG | 0.541708 | 6_1:+22866737 | Msa0879950:CDS |
| TTAGGGTCAGATTTCCTCAC+GGG | 0.551431 | 6_1:+22867287 | Msa0879950:CDS |
| GGTTGATAAATGCACGGGTG+AGG | 0.561807 | 6_1:+22867255 | Msa0879950:CDS |
| ACAATTGTTGTGGGGTACAA+TGG | 0.562830 | 6_1:+22867070 | Msa0879950:CDS |
| AATGGTGGAACAATTGTTGT+GGG | 0.563879 | 6_1:+22867061 | Msa0879950:CDS |
| AGCAGCAATTAAAGCTAGTG+TGG | 0.570090 | 6_1:-22866810 | None:intergenic |
| GTTAAGGTTGATAAATGCAC+GGG | 0.574652 | 6_1:+22867250 | Msa0879950:CDS |
| TGTTAAGGTTGATAAATGCA+CGG | 0.583257 | 6_1:+22867249 | Msa0879950:CDS |
| TTGATGTGAAGCAATTCCTA+AGG | 0.600666 | 6_1:-22866903 | None:intergenic |
| GAGGGTAGAAATGTAAATGG+TGG | 0.603769 | 6_1:+22867046 | Msa0879950:CDS |
| GATTCTCAAAACAATTCAAG+AGG | 0.603978 | 6_1:+22867027 | Msa0879950:CDS |
| GTCTGCAGAAAATGCCACAA+AGG | 0.634425 | 6_1:+22866530 | Msa0879950:CDS |
| AAATGGTGGAACAATTGTTG+TGG | 0.637602 | 6_1:+22867060 | Msa0879950:CDS |
| TTTAGGGTCAGATTTCCTCA+CGG | 0.639337 | 6_1:+22867286 | Msa0879950:CDS |
| GCTTGAATAACTTTCCCGTG+AGG | 0.639541 | 6_1:-22867301 | None:intergenic |
| ATTCTCAAAACAATTCAAGA+GGG | 0.642069 | 6_1:+22867028 | Msa0879950:CDS |
| GCTGCTGCTAATCAAACTGG+TGG | 0.642077 | 6_1:+22866827 | Msa0879950:CDS |
| AAAGGATCTTGGTTATCATG+TGG | 0.648675 | 6_1:+22867103 | Msa0879950:CDS |
| ATGGTGGAACAATTGTTGTG+GGG | 0.755080 | 6_1:+22867062 | Msa0879950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAACATATTCAATAAGA+TGG | - | chr6_1:22866614-22866633 | None:intergenic | 20.0% |
| !! | TCTAAACATATTCAATAAGA+TGG | - | chr6_1:22866614-22866633 | None:intergenic | 20.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | - | chr6_1:22866474-22866493 | None:intergenic | 25.0% |
| !!! | TTTTGTGTGTTATTTTCTTC+AGG | + | chr6_1:22866682-22866701 | Msa0879950:intron | 25.0% |
| !!! | TTTGTGTGTTATTTTCTTCA+GGG | + | chr6_1:22866683-22866702 | Msa0879950:intron | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | - | chr6_1:22866725-22866744 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | - | chr6_1:22866871-22866890 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | + | chr6_1:22867028-22867047 | Msa0879950:CDS | 25.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | - | chr6_1:22866474-22866493 | None:intergenic | 25.0% |
| !!! | TTTTGTGTGTTATTTTCTTC+AGG | + | chr6_1:22866682-22866701 | Msa0879950:intron | 25.0% |
| !!! | TTTGTGTGTTATTTTCTTCA+GGG | + | chr6_1:22866683-22866702 | Msa0879950:intron | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | - | chr6_1:22866725-22866744 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | - | chr6_1:22866871-22866890 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | + | chr6_1:22867028-22867047 | Msa0879950:CDS | 25.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | + | chr6_1:22866470-22866489 | Msa0879950:five_prime_UTR | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | - | chr6_1:22866487-22866506 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | - | chr6_1:22866498-22866517 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | + | chr6_1:22866500-22866519 | Msa0879950:exon | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | - | chr6_1:22866556-22866575 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | + | chr6_1:22866554-22866573 | Msa0879950:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | - | chr6_1:22866872-22866891 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | - | chr6_1:22866877-22866896 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | - | chr6_1:22866973-22866992 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | + | chr6_1:22867027-22867046 | Msa0879950:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | + | chr6_1:22867085-22867104 | Msa0879950:CDS | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | + | chr6_1:22867187-22867206 | Msa0879950:CDS | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | + | chr6_1:22867204-22867223 | Msa0879950:CDS | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | + | chr6_1:22867205-22867224 | Msa0879950:CDS | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | + | chr6_1:22867249-22867268 | Msa0879950:CDS | 30.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | + | chr6_1:22866470-22866489 | Msa0879950:five_prime_UTR | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | - | chr6_1:22866487-22866506 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | - | chr6_1:22866498-22866517 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | + | chr6_1:22866500-22866519 | Msa0879950:exon | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | - | chr6_1:22866556-22866575 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | + | chr6_1:22866554-22866573 | Msa0879950:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | - | chr6_1:22866872-22866891 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | - | chr6_1:22866877-22866896 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | - | chr6_1:22866973-22866992 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | + | chr6_1:22867027-22867046 | Msa0879950:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | + | chr6_1:22867085-22867104 | Msa0879950:CDS | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | + | chr6_1:22867187-22867206 | Msa0879950:CDS | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | + | chr6_1:22867204-22867223 | Msa0879950:CDS | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | + | chr6_1:22867205-22867224 | Msa0879950:CDS | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | + | chr6_1:22867249-22867268 | Msa0879950:CDS | 30.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | - | chr6_1:22866717-22866736 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | - | chr6_1:22866906-22866925 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | + | chr6_1:22866916-22866935 | Msa0879950:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | + | chr6_1:22867043-22867062 | Msa0879950:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | + | chr6_1:22867060-22867079 | Msa0879950:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | + | chr6_1:22867061-22867080 | Msa0879950:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | + | chr6_1:22867092-22867111 | Msa0879950:CDS | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | + | chr6_1:22867103-22867122 | Msa0879950:CDS | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | + | chr6_1:22867130-22867149 | Msa0879950:CDS | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | + | chr6_1:22867137-22867156 | Msa0879950:CDS | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | - | chr6_1:22867202-22867221 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | + | chr6_1:22867224-22867243 | Msa0879950:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | + | chr6_1:22867225-22867244 | Msa0879950:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | + | chr6_1:22867234-22867253 | Msa0879950:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | + | chr6_1:22867250-22867269 | Msa0879950:CDS | 35.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | - | chr6_1:22866717-22866736 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | - | chr6_1:22866906-22866925 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | + | chr6_1:22866916-22866935 | Msa0879950:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | + | chr6_1:22867043-22867062 | Msa0879950:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | + | chr6_1:22867060-22867079 | Msa0879950:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | + | chr6_1:22867061-22867080 | Msa0879950:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | + | chr6_1:22867092-22867111 | Msa0879950:CDS | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | + | chr6_1:22867103-22867122 | Msa0879950:CDS | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | + | chr6_1:22867130-22867149 | Msa0879950:CDS | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | + | chr6_1:22867137-22867156 | Msa0879950:CDS | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | - | chr6_1:22867202-22867221 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | + | chr6_1:22867224-22867243 | Msa0879950:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | + | chr6_1:22867225-22867244 | Msa0879950:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | + | chr6_1:22867234-22867253 | Msa0879950:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | + | chr6_1:22867250-22867269 | Msa0879950:CDS | 35.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | - | chr6_1:22866507-22866526 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | + | chr6_1:22866508-22866527 | Msa0879950:exon | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | + | chr6_1:22866737-22866756 | Msa0879950:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | - | chr6_1:22866813-22866832 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | + | chr6_1:22866824-22866843 | Msa0879950:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | + | chr6_1:22866887-22866906 | Msa0879950:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | - | chr6_1:22866897-22866916 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | + | chr6_1:22866920-22866939 | Msa0879950:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | - | chr6_1:22866931-22866950 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | + | chr6_1:22866946-22866965 | Msa0879950:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | + | chr6_1:22867046-22867065 | Msa0879950:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | + | chr6_1:22867062-22867081 | Msa0879950:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | + | chr6_1:22867070-22867089 | Msa0879950:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | + | chr6_1:22867136-22867155 | Msa0879950:CDS | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | + | chr6_1:22867286-22867305 | Msa0879950:CDS | 40.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | - | chr6_1:22866507-22866526 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | + | chr6_1:22866508-22866527 | Msa0879950:exon | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | + | chr6_1:22866737-22866756 | Msa0879950:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | - | chr6_1:22866813-22866832 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | + | chr6_1:22866824-22866843 | Msa0879950:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | + | chr6_1:22866887-22866906 | Msa0879950:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | - | chr6_1:22866897-22866916 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | + | chr6_1:22866920-22866939 | Msa0879950:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | - | chr6_1:22866931-22866950 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | + | chr6_1:22866946-22866965 | Msa0879950:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | + | chr6_1:22867046-22867065 | Msa0879950:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | + | chr6_1:22867062-22867081 | Msa0879950:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | + | chr6_1:22867070-22867089 | Msa0879950:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | + | chr6_1:22867136-22867155 | Msa0879950:CDS | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | + | chr6_1:22867286-22867305 | Msa0879950:CDS | 40.0% |
| GTCTGCAGAAAATGCCACAA+AGG | + | chr6_1:22866530-22866549 | Msa0879950:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | - | chr6_1:22866547-22866566 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | - | chr6_1:22867148-22867167 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | + | chr6_1:22867157-22867176 | Msa0879950:CDS | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | + | chr6_1:22867270-22867289 | Msa0879950:CDS | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | + | chr6_1:22867287-22867306 | Msa0879950:CDS | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | - | chr6_1:22867304-22867323 | None:intergenic | 45.0% | |
| GTCTGCAGAAAATGCCACAA+AGG | + | chr6_1:22866530-22866549 | Msa0879950:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | - | chr6_1:22866547-22866566 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | - | chr6_1:22867148-22867167 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | + | chr6_1:22867157-22867176 | Msa0879950:CDS | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | + | chr6_1:22867270-22867289 | Msa0879950:CDS | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | + | chr6_1:22867287-22867306 | Msa0879950:CDS | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | - | chr6_1:22867304-22867323 | None:intergenic | 45.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | + | chr6_1:22866827-22866846 | Msa0879950:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | + | chr6_1:22867144-22867163 | Msa0879950:CDS | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | + | chr6_1:22867255-22867274 | Msa0879950:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | + | chr6_1:22867269-22867288 | Msa0879950:CDS | 50.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | + | chr6_1:22866827-22866846 | Msa0879950:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | + | chr6_1:22867144-22867163 | Msa0879950:CDS | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | + | chr6_1:22867255-22867274 | Msa0879950:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | + | chr6_1:22867269-22867288 | Msa0879950:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 22866468 | 22867327 | 22866468 | ID=Msa0879950;Name=Msa0879950 |
| chr6_1 | mRNA | 22866468 | 22867327 | 22866468 | ID=Msa0879950-mRNA-1;Parent=Msa0879950;Name=Msa0879950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=51|1|0.5|1|1|1|2|0|226 |
| chr6_1 | exon | 22866468 | 22866575 | 22866468 | ID=Msa0879950-mRNA-1:exon:6273;Parent=Msa0879950-mRNA-1 |
| chr6_1 | exon | 22866704 | 22867327 | 22866704 | ID=Msa0879950-mRNA-1:exon:6274;Parent=Msa0879950-mRNA-1 |
| chr6_1 | five_prime_UTR | 22866468 | 22866518 | 22866468 | ID=Msa0879950-mRNA-1:five_prime_utr;Parent=Msa0879950-mRNA-1 |
| chr6_1 | CDS | 22866519 | 22866575 | 22866519 | ID=Msa0879950-mRNA-1:cds;Parent=Msa0879950-mRNA-1 |
| chr6_1 | CDS | 22866704 | 22867327 | 22866704 | ID=Msa0879950-mRNA-1:cds;Parent=Msa0879950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
