Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030720 | Msa0078100 | 0.850807 | 1.336909e-60 | -8.615850e-47 |
| Msa0030720 | Msa0171980 | 0.807979 | 3.878858e-50 | -8.615850e-47 |
| Msa0030720 | Msa0638540 | 0.812902 | 3.355856e-51 | -8.615850e-47 |
| Msa0030720 | Msa0830180 | 0.804252 | 2.361308e-49 | -8.615850e-47 |
| Msa0030720 | Msa0879950 | 0.984707 | 2.383442e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030720 | MtrunA17_Chr1g0188241 | 96.903 | 226 | 3 | 1 | 1 | 226 | 1 | 222 | 2.70e-163 | 449 |
| Msa0030720 | MtrunA17_Chr6g0476521 | 70.742 | 229 | 58 | 5 | 1 | 226 | 1 | 223 | 2.63e-109 | 313 |
| Msa0030720 | MtrunA17_Chr6g0476511 | 68.860 | 228 | 62 | 5 | 1 | 226 | 1 | 221 | 1.50e-106 | 306 |
| Msa0030720 | MtrunA17_Chr4g0011081 | 49.776 | 223 | 104 | 4 | 1 | 223 | 1 | 215 | 1.45e-66 | 204 |
| Msa0030720 | MtrunA17_Chr7g0275631 | 35.065 | 231 | 121 | 9 | 4 | 216 | 3 | 222 | 3.47e-28 | 106 |
| Msa0030720 | MtrunA17_Chr4g0056901 | 30.973 | 226 | 136 | 7 | 4 | 215 | 5 | 224 | 2.70e-23 | 93.6 |
| Msa0030720 | MtrunA17_Chr4g0011241 | 28.512 | 242 | 128 | 10 | 4 | 215 | 5 | 231 | 1.74e-20 | 86.3 |
| Msa0030720 | MtrunA17_Chr5g0398711 | 26.087 | 230 | 148 | 8 | 3 | 215 | 54 | 278 | 9.97e-19 | 82.4 |
| Msa0030720 | MtrunA17_Chr5g0398721 | 28.448 | 232 | 138 | 12 | 4 | 215 | 8 | 231 | 3.85e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030720 | AT5G62280.1 | 54.894 | 235 | 93 | 7 | 1 | 224 | 1 | 233 | 3.58e-69 | 212 |
| Msa0030720 | AT2G45360.1 | 31.250 | 224 | 128 | 10 | 4 | 215 | 5 | 214 | 1.31e-24 | 97.1 |
| Msa0030720 | AT3G60780.1 | 28.761 | 226 | 134 | 10 | 4 | 215 | 5 | 217 | 2.88e-21 | 88.6 |
| Msa0030720 | AT1G12320.1 | 28.440 | 218 | 141 | 6 | 4 | 216 | 5 | 212 | 4.38e-14 | 68.9 |
| Msa0030720 | AT1G62840.1 | 29.060 | 234 | 129 | 10 | 4 | 215 | 5 | 223 | 4.81e-12 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCTAAAATAACCTTAA+AGG | 0.188791 | 1_1:+57137093 | Msa0030720:five_prime_UTR |
| TTCAGCTACATTTGGTTCTT+TGG | 0.195817 | 1_1:-57137337 | None:intergenic |
| TGGATGCAATAAGATCTTTA+TGG | 0.261093 | 1_1:-57137497 | None:intergenic |
| CAAGCCATAGTTCAGTTTCT+TGG | 0.268829 | 1_1:-57137127 | None:intergenic |
| CTATCTTAGCACTTTGAAAA+TGG | 0.284211 | 1_1:+57137177 | Msa0030720:CDS |
| GCAATAAGATCTTTATGGTT+AGG | 0.336334 | 1_1:-57137492 | None:intergenic |
| GCCAATTGGAGAAGGGCTTT+TGG | 0.338994 | 1_1:+57137767 | Msa0030720:CDS |
| GATCTACTTGTTCCATATCT+TGG | 0.344912 | 1_1:-57137822 | None:intergenic |
| CAAGAGGGTAGAAATGTAAA+TGG | 0.345596 | 1_1:+57137666 | Msa0030720:CDS |
| TTCACATCAAGTCCAATTCA+TGG | 0.355274 | 1_1:+57137539 | Msa0030720:CDS |
| TAAAAGTCGTTGGGTTGTTA+AGG | 0.363789 | 1_1:+57137857 | Msa0030720:CDS |
| GATATAAATTCAGCTACATT+TGG | 0.368857 | 1_1:-57137345 | None:intergenic |
| AGCTCAAGAAGTGCTTCTAT+TGG | 0.369696 | 1_1:+57137569 | Msa0030720:CDS |
| GAGAATAATAGTCCAAGATA+TGG | 0.371871 | 1_1:+57137810 | Msa0030720:CDS |
| AGCAATTCCTAAGGCATGTT+TGG | 0.381874 | 1_1:-57137517 | None:intergenic |
| GATTTAGTTGCAAAGGATCT+TGG | 0.393832 | 1_1:+57137715 | Msa0030720:CDS |
| CGGGTGAGGAACATGTGTTT+AGG | 0.395191 | 1_1:+57137892 | Msa0030720:CDS |
| AAAACCAAGAAACTGAACTA+TGG | 0.413679 | 1_1:+57137123 | Msa0030720:exon |
| ACCAAAAGCCCTTCTCCAAT+TGG | 0.423738 | 1_1:-57137768 | None:intergenic |
| CAATAAGATCTTTATGGTTA+GGG | 0.439051 | 1_1:-57137491 | None:intergenic |
| ATTGCTGCTGCTAATCAAAC+TGG | 0.439338 | 1_1:+57137447 | Msa0030720:CDS |
| GGGTGAGGAACATGTGTTTA+GGG | 0.449763 | 1_1:+57137893 | Msa0030720:CDS |
| GAAACTGAACTATGGCTTGT+TGG | 0.450379 | 1_1:+57137131 | Msa0030720:exon |
| GGGAAAGATTAAAAGTCGTT+GGG | 0.463641 | 1_1:+57137848 | Msa0030720:CDS |
| ATTGCATCCAAACATGCCTT+AGG | 0.467318 | 1_1:+57137510 | Msa0030720:CDS |
| TGGGAAAGATTAAAAGTCGT+TGG | 0.470491 | 1_1:+57137847 | Msa0030720:CDS |
| TATGGAACAAGTAGATCAAT+GGG | 0.483840 | 1_1:+57137828 | Msa0030720:CDS |
| ATATGGAACAAGTAGATCAA+TGG | 0.502769 | 1_1:+57137827 | Msa0030720:CDS |
| TACAATGGATTTAGTTGCAA+AGG | 0.506221 | 1_1:+57137708 | Msa0030720:CDS |
| AGTGCTAAGATAGGCCTTTG+TGG | 0.521249 | 1_1:-57137167 | None:intergenic |
| CATCAAGTCCAATTCATGGT+TGG | 0.523861 | 1_1:+57137543 | Msa0030720:CDS |
| TTTATATCAGCACTAGCTGC+AGG | 0.541708 | 1_1:+57137360 | Msa0030720:CDS |
| TTAGGGTCAGATTTCCTCAC+GGG | 0.551431 | 1_1:+57137910 | Msa0030720:CDS |
| GGTTGATAAATGCACGGGTG+AGG | 0.561807 | 1_1:+57137878 | Msa0030720:CDS |
| ACAATTGTTGTGGGGTACAA+TGG | 0.562830 | 1_1:+57137693 | Msa0030720:CDS |
| AATGGTGGAACAATTGTTGT+GGG | 0.563879 | 1_1:+57137684 | Msa0030720:CDS |
| AGCAGCAATTAAAGCTAGTG+TGG | 0.570090 | 1_1:-57137433 | None:intergenic |
| GTTAAGGTTGATAAATGCAC+GGG | 0.574652 | 1_1:+57137873 | Msa0030720:CDS |
| TGTTAAGGTTGATAAATGCA+CGG | 0.583257 | 1_1:+57137872 | Msa0030720:CDS |
| TTGATGTGAAGCAATTCCTA+AGG | 0.600666 | 1_1:-57137526 | None:intergenic |
| GAGGGTAGAAATGTAAATGG+TGG | 0.603769 | 1_1:+57137669 | Msa0030720:CDS |
| GATTCTCAAAACAATTCAAG+AGG | 0.603978 | 1_1:+57137650 | Msa0030720:CDS |
| GTCTGCAGAAAATGCCACAA+AGG | 0.634425 | 1_1:+57137153 | Msa0030720:CDS |
| AAATGGTGGAACAATTGTTG+TGG | 0.637602 | 1_1:+57137683 | Msa0030720:CDS |
| TTTAGGGTCAGATTTCCTCA+CGG | 0.639337 | 1_1:+57137909 | Msa0030720:CDS |
| GCTTGAATAACTTTCCCGTG+AGG | 0.639541 | 1_1:-57137924 | None:intergenic |
| ATTCTCAAAACAATTCAAGA+GGG | 0.642069 | 1_1:+57137651 | Msa0030720:CDS |
| GCTGCTGCTAATCAAACTGG+TGG | 0.642077 | 1_1:+57137450 | Msa0030720:CDS |
| AAAGGATCTTGGTTATCATG+TGG | 0.648675 | 1_1:+57137726 | Msa0030720:CDS |
| ATGGTGGAACAATTGTTGTG+GGG | 0.755080 | 1_1:+57137685 | Msa0030720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAACATATTCAATAAGA+TGG | - | chr1_1:57137237-57137256 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTTATTTTCTTC+AGG | + | chr1_1:57137305-57137324 | Msa0030720:intron | 20.0% |
| !!! | TTTTTGTGTTATTTTCTTCA+GGG | + | chr1_1:57137306-57137325 | Msa0030720:intron | 20.0% |
| !! | TCTAAACATATTCAATAAGA+TGG | - | chr1_1:57137237-57137256 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTTATTTTCTTC+AGG | + | chr1_1:57137305-57137324 | Msa0030720:intron | 20.0% |
| !!! | TTTTTGTGTTATTTTCTTCA+GGG | + | chr1_1:57137306-57137325 | Msa0030720:intron | 20.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | - | chr1_1:57137097-57137116 | None:intergenic | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | - | chr1_1:57137348-57137367 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | - | chr1_1:57137494-57137513 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | + | chr1_1:57137651-57137670 | Msa0030720:CDS | 25.0% |
| !!! | TCCTTTAAGGTTATTTTAGA+TGG | - | chr1_1:57137097-57137116 | None:intergenic | 25.0% |
| ! | GATATAAATTCAGCTACATT+TGG | - | chr1_1:57137348-57137367 | None:intergenic | 25.0% |
| ! | CAATAAGATCTTTATGGTTA+GGG | - | chr1_1:57137494-57137513 | None:intergenic | 25.0% |
| ! | ATTCTCAAAACAATTCAAGA+GGG | + | chr1_1:57137651-57137670 | Msa0030720:CDS | 25.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | + | chr1_1:57137093-57137112 | Msa0030720:five_prime_UTR | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | - | chr1_1:57137110-57137129 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | - | chr1_1:57137121-57137140 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | + | chr1_1:57137123-57137142 | Msa0030720:exon | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | - | chr1_1:57137179-57137198 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | + | chr1_1:57137177-57137196 | Msa0030720:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | - | chr1_1:57137495-57137514 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | - | chr1_1:57137500-57137519 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | - | chr1_1:57137596-57137615 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | + | chr1_1:57137650-57137669 | Msa0030720:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | + | chr1_1:57137708-57137727 | Msa0030720:CDS | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | + | chr1_1:57137810-57137829 | Msa0030720:CDS | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | + | chr1_1:57137827-57137846 | Msa0030720:CDS | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | + | chr1_1:57137828-57137847 | Msa0030720:CDS | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | + | chr1_1:57137872-57137891 | Msa0030720:CDS | 30.0% |
| ! | GCCATCTAAAATAACCTTAA+AGG | + | chr1_1:57137093-57137112 | Msa0030720:five_prime_UTR | 30.0% |
| !!! | TGGTTTTTTTGGTTCCTTTA+AGG | - | chr1_1:57137110-57137129 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTCTTGGTTTTTT+TGG | - | chr1_1:57137121-57137140 | None:intergenic | 30.0% |
| AAAACCAAGAAACTGAACTA+TGG | + | chr1_1:57137123-57137142 | Msa0030720:exon | 30.0% | |
| !! | CATTTTCAAAGTGCTAAGAT+AGG | - | chr1_1:57137179-57137198 | None:intergenic | 30.0% |
| ! | CTATCTTAGCACTTTGAAAA+TGG | + | chr1_1:57137177-57137196 | Msa0030720:CDS | 30.0% |
| GCAATAAGATCTTTATGGTT+AGG | - | chr1_1:57137495-57137514 | None:intergenic | 30.0% | |
| TGGATGCAATAAGATCTTTA+TGG | - | chr1_1:57137500-57137519 | None:intergenic | 30.0% | |
| AAAAATCAGCTGCTTCATAT+TGG | - | chr1_1:57137596-57137615 | None:intergenic | 30.0% | |
| GATTCTCAAAACAATTCAAG+AGG | + | chr1_1:57137650-57137669 | Msa0030720:CDS | 30.0% | |
| ! | TACAATGGATTTAGTTGCAA+AGG | + | chr1_1:57137708-57137727 | Msa0030720:CDS | 30.0% |
| GAGAATAATAGTCCAAGATA+TGG | + | chr1_1:57137810-57137829 | Msa0030720:CDS | 30.0% | |
| ATATGGAACAAGTAGATCAA+TGG | + | chr1_1:57137827-57137846 | Msa0030720:CDS | 30.0% | |
| TATGGAACAAGTAGATCAAT+GGG | + | chr1_1:57137828-57137847 | Msa0030720:CDS | 30.0% | |
| !! | TGTTAAGGTTGATAAATGCA+CGG | + | chr1_1:57137872-57137891 | Msa0030720:CDS | 30.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | - | chr1_1:57137340-57137359 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | - | chr1_1:57137529-57137548 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | + | chr1_1:57137539-57137558 | Msa0030720:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | + | chr1_1:57137666-57137685 | Msa0030720:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | + | chr1_1:57137683-57137702 | Msa0030720:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | + | chr1_1:57137684-57137703 | Msa0030720:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | + | chr1_1:57137715-57137734 | Msa0030720:CDS | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | + | chr1_1:57137726-57137745 | Msa0030720:CDS | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | + | chr1_1:57137753-57137772 | Msa0030720:CDS | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | + | chr1_1:57137760-57137779 | Msa0030720:CDS | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | - | chr1_1:57137825-57137844 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | + | chr1_1:57137847-57137866 | Msa0030720:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | + | chr1_1:57137848-57137867 | Msa0030720:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | + | chr1_1:57137857-57137876 | Msa0030720:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | + | chr1_1:57137873-57137892 | Msa0030720:CDS | 35.0% |
| !! | TTCAGCTACATTTGGTTCTT+TGG | - | chr1_1:57137340-57137359 | None:intergenic | 35.0% |
| TTGATGTGAAGCAATTCCTA+AGG | - | chr1_1:57137529-57137548 | None:intergenic | 35.0% | |
| TTCACATCAAGTCCAATTCA+TGG | + | chr1_1:57137539-57137558 | Msa0030720:CDS | 35.0% | |
| CAAGAGGGTAGAAATGTAAA+TGG | + | chr1_1:57137666-57137685 | Msa0030720:CDS | 35.0% | |
| ! | AAATGGTGGAACAATTGTTG+TGG | + | chr1_1:57137683-57137702 | Msa0030720:CDS | 35.0% |
| ! | AATGGTGGAACAATTGTTGT+GGG | + | chr1_1:57137684-57137703 | Msa0030720:CDS | 35.0% |
| GATTTAGTTGCAAAGGATCT+TGG | + | chr1_1:57137715-57137734 | Msa0030720:CDS | 35.0% | |
| AAAGGATCTTGGTTATCATG+TGG | + | chr1_1:57137726-57137745 | Msa0030720:CDS | 35.0% | |
| ! | AAGACTCAACTTTTGCCAAT+TGG | + | chr1_1:57137753-57137772 | Msa0030720:CDS | 35.0% |
| ! | AACTTTTGCCAATTGGAGAA+GGG | + | chr1_1:57137760-57137779 | Msa0030720:CDS | 35.0% |
| GATCTACTTGTTCCATATCT+TGG | - | chr1_1:57137825-57137844 | None:intergenic | 35.0% | |
| TGGGAAAGATTAAAAGTCGT+TGG | + | chr1_1:57137847-57137866 | Msa0030720:CDS | 35.0% | |
| GGGAAAGATTAAAAGTCGTT+GGG | + | chr1_1:57137848-57137867 | Msa0030720:CDS | 35.0% | |
| ! | TAAAAGTCGTTGGGTTGTTA+AGG | + | chr1_1:57137857-57137876 | Msa0030720:CDS | 35.0% |
| !! | GTTAAGGTTGATAAATGCAC+GGG | + | chr1_1:57137873-57137892 | Msa0030720:CDS | 35.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | - | chr1_1:57137130-57137149 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | + | chr1_1:57137131-57137150 | Msa0030720:exon | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | + | chr1_1:57137360-57137379 | Msa0030720:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | - | chr1_1:57137436-57137455 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | + | chr1_1:57137447-57137466 | Msa0030720:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | + | chr1_1:57137510-57137529 | Msa0030720:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | - | chr1_1:57137520-57137539 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | + | chr1_1:57137543-57137562 | Msa0030720:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | - | chr1_1:57137554-57137573 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | + | chr1_1:57137569-57137588 | Msa0030720:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | + | chr1_1:57137669-57137688 | Msa0030720:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | + | chr1_1:57137685-57137704 | Msa0030720:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | + | chr1_1:57137693-57137712 | Msa0030720:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | + | chr1_1:57137759-57137778 | Msa0030720:CDS | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | + | chr1_1:57137909-57137928 | Msa0030720:CDS | 40.0% |
| CAAGCCATAGTTCAGTTTCT+TGG | - | chr1_1:57137130-57137149 | None:intergenic | 40.0% | |
| ! | GAAACTGAACTATGGCTTGT+TGG | + | chr1_1:57137131-57137150 | Msa0030720:exon | 40.0% |
| TTTATATCAGCACTAGCTGC+AGG | + | chr1_1:57137360-57137379 | Msa0030720:CDS | 40.0% | |
| AGCAGCAATTAAAGCTAGTG+TGG | - | chr1_1:57137436-57137455 | None:intergenic | 40.0% | |
| ATTGCTGCTGCTAATCAAAC+TGG | + | chr1_1:57137447-57137466 | Msa0030720:CDS | 40.0% | |
| ATTGCATCCAAACATGCCTT+AGG | + | chr1_1:57137510-57137529 | Msa0030720:CDS | 40.0% | |
| AGCAATTCCTAAGGCATGTT+TGG | - | chr1_1:57137520-57137539 | None:intergenic | 40.0% | |
| CATCAAGTCCAATTCATGGT+TGG | + | chr1_1:57137543-57137562 | Msa0030720:CDS | 40.0% | |
| ! | GAGCTTTTCCAACCATGAAT+TGG | - | chr1_1:57137554-57137573 | None:intergenic | 40.0% |
| !! | AGCTCAAGAAGTGCTTCTAT+TGG | + | chr1_1:57137569-57137588 | Msa0030720:CDS | 40.0% |
| GAGGGTAGAAATGTAAATGG+TGG | + | chr1_1:57137669-57137688 | Msa0030720:CDS | 40.0% | |
| ! | ATGGTGGAACAATTGTTGTG+GGG | + | chr1_1:57137685-57137704 | Msa0030720:CDS | 40.0% |
| ACAATTGTTGTGGGGTACAA+TGG | + | chr1_1:57137693-57137712 | Msa0030720:CDS | 40.0% | |
| ! | CAACTTTTGCCAATTGGAGA+AGG | + | chr1_1:57137759-57137778 | Msa0030720:CDS | 40.0% |
| ! | TTTAGGGTCAGATTTCCTCA+CGG | + | chr1_1:57137909-57137928 | Msa0030720:CDS | 40.0% |
| GTCTGCAGAAAATGCCACAA+AGG | + | chr1_1:57137153-57137172 | Msa0030720:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | - | chr1_1:57137170-57137189 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | - | chr1_1:57137771-57137790 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | + | chr1_1:57137780-57137799 | Msa0030720:CDS | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | + | chr1_1:57137893-57137912 | Msa0030720:CDS | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | + | chr1_1:57137910-57137929 | Msa0030720:CDS | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | - | chr1_1:57137927-57137946 | None:intergenic | 45.0% | |
| GTCTGCAGAAAATGCCACAA+AGG | + | chr1_1:57137153-57137172 | Msa0030720:CDS | 45.0% | |
| AGTGCTAAGATAGGCCTTTG+TGG | - | chr1_1:57137170-57137189 | None:intergenic | 45.0% | |
| ACCAAAAGCCCTTCTCCAAT+TGG | - | chr1_1:57137771-57137790 | None:intergenic | 45.0% | |
| !! | GGGCTTTTGGTGACAAGATT+TGG | + | chr1_1:57137780-57137799 | Msa0030720:CDS | 45.0% |
| GGGTGAGGAACATGTGTTTA+GGG | + | chr1_1:57137893-57137912 | Msa0030720:CDS | 45.0% | |
| TTAGGGTCAGATTTCCTCAC+GGG | + | chr1_1:57137910-57137929 | Msa0030720:CDS | 45.0% | |
| GCTTGAATAACTTTCCCGTG+AGG | - | chr1_1:57137927-57137946 | None:intergenic | 45.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | + | chr1_1:57137450-57137469 | Msa0030720:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | + | chr1_1:57137767-57137786 | Msa0030720:CDS | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | + | chr1_1:57137878-57137897 | Msa0030720:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | + | chr1_1:57137892-57137911 | Msa0030720:CDS | 50.0% | |
| GCTGCTGCTAATCAAACTGG+TGG | + | chr1_1:57137450-57137469 | Msa0030720:CDS | 50.0% | |
| ! | GCCAATTGGAGAAGGGCTTT+TGG | + | chr1_1:57137767-57137786 | Msa0030720:CDS | 50.0% |
| !! | GGTTGATAAATGCACGGGTG+AGG | + | chr1_1:57137878-57137897 | Msa0030720:CDS | 50.0% |
| CGGGTGAGGAACATGTGTTT+AGG | + | chr1_1:57137892-57137911 | Msa0030720:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57137091 | 57137950 | 57137091 | ID=Msa0030720;Name=Msa0030720 |
| chr1_1 | mRNA | 57137091 | 57137950 | 57137091 | ID=Msa0030720-mRNA-1;Parent=Msa0030720;Name=Msa0030720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=51|1|0.5|1|1|1|2|0|226 |
| chr1_1 | exon | 57137091 | 57137198 | 57137091 | ID=Msa0030720-mRNA-1:exon:17191;Parent=Msa0030720-mRNA-1 |
| chr1_1 | exon | 57137327 | 57137950 | 57137327 | ID=Msa0030720-mRNA-1:exon:17192;Parent=Msa0030720-mRNA-1 |
| chr1_1 | five_prime_UTR | 57137091 | 57137141 | 57137091 | ID=Msa0030720-mRNA-1:five_prime_utr;Parent=Msa0030720-mRNA-1 |
| chr1_1 | CDS | 57137142 | 57137198 | 57137142 | ID=Msa0030720-mRNA-1:cds;Parent=Msa0030720-mRNA-1 |
| chr1_1 | CDS | 57137327 | 57137950 | 57137327 | ID=Msa0030720-mRNA-1:cds;Parent=Msa0030720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
