Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078220 | sp|P38222|RKM3_YEAST | 27.147 | 361 | 204 | 11 | 28 | 334 | 32 | 387 | 4.34e-20 | 97.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078220 | A0A072VLJ5 | 95.171 | 497 | 24 | 0 | 1 | 497 | 1 | 497 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0078220 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030810 | Msa0078220 | 0.960002 | 4.561970e-118 | -8.615850e-47 |
| Msa0078220 | Msa1438170 | 0.950563 | 1.272379e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078220 | MtrunA17_Chr1g0188461 | 95.171 | 497 | 24 | 0 | 1 | 497 | 1 | 497 | 0.0 | 909 |
| Msa0078220 | MtrunA17_Chr4g0042701 | 29.798 | 198 | 125 | 6 | 6 | 197 | 55 | 244 | 5.95e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078220 | AT3G56570.1 | 54.851 | 536 | 195 | 9 | 1 | 495 | 1 | 530 | 0.0 | 540 |
| Msa0078220 | AT3G56570.2 | 54.749 | 537 | 195 | 10 | 1 | 495 | 1 | 531 | 0.0 | 535 |
| Msa0078220 | AT1G14030.1 | 27.638 | 199 | 128 | 6 | 6 | 197 | 49 | 238 | 2.80e-11 | 66.2 |
Find 100 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACGGATATTCCTTCTTC+TGG | 0.208879 | 1_2:+55588706 | None:intergenic |
| TGCTTGTTTGGGTGGTTATT+TGG | 0.212284 | 1_2:-55588584 | Msa0078220:CDS |
| ATTTAATACTTACGGGATAT+TGG | 0.228032 | 1_2:-55585494 | Msa0078220:CDS |
| CAAAGCATCACAAATTTCTT+TGG | 0.259751 | 1_2:+55585081 | None:intergenic |
| ATTGTAAGACAAGCTTTCTT+TGG | 0.277640 | 1_2:+55588640 | None:intergenic |
| ATAGATGATTACCATGGTTT+TGG | 0.280289 | 1_2:-55587286 | Msa0078220:CDS |
| GATTTCACACAATGCTTTAA+CGG | 0.292015 | 1_2:+55588690 | None:intergenic |
| GCTTGTTTGGGTGGTTATTT+GGG | 0.306425 | 1_2:-55588583 | Msa0078220:CDS |
| AAGCTTAACTCGGAATTCTT+TGG | 0.307286 | 1_2:-55587361 | Msa0078220:CDS |
| GATCATTGAAAATGCTTGTT+TGG | 0.311113 | 1_2:-55588596 | Msa0078220:CDS |
| TGATATCGTGAACATTGATT+TGG | 0.321625 | 1_2:-55585419 | Msa0078220:CDS |
| TCGAGAAGAAATAAGACTTT+TGG | 0.326128 | 1_2:+55587318 | None:intergenic |
| TTTAATACTTACGGGATATT+GGG | 0.328807 | 1_2:-55585493 | Msa0078220:CDS |
| GCTGCTTTGCTACATAGATA+TGG | 0.329797 | 1_2:-55585466 | Msa0078220:CDS |
| TAACGGATATTCCTTCTTCT+GGG | 0.338446 | 1_2:+55588707 | None:intergenic |
| AGATGATGTATAATAAAATA+AGG | 0.350807 | 1_2:+55585248 | None:intergenic |
| TCAACAGGAATGTTTGCCTT+TGG | 0.352496 | 1_2:-55588485 | Msa0078220:CDS |
| TATTATGTATGAGAGGAGTT+TGG | 0.353787 | 1_2:-55588548 | Msa0078220:CDS |
| TACAGGTATTTAATACTTAC+GGG | 0.360220 | 1_2:-55585501 | Msa0078220:intron |
| TCCAGATTCAATCATAAAAC+TGG | 0.369547 | 1_2:-55585981 | Msa0078220:intron |
| AATTCCGAGTTAAGCTTTGA+AGG | 0.381928 | 1_2:+55587367 | None:intergenic |
| AGGAATGTTTGCCTTTGGTT+TGG | 0.382903 | 1_2:-55588480 | Msa0078220:CDS |
| TATTTCGAGATATCATTTGA+TGG | 0.393572 | 1_2:-55585289 | Msa0078220:CDS |
| ATCATTGAAAATGCTTGTTT+GGG | 0.394754 | 1_2:-55588595 | Msa0078220:CDS |
| ATACAGGTATTTAATACTTA+CGG | 0.399560 | 1_2:-55585502 | Msa0078220:intron |
| TTTGGGTGAGGAGTCTCCTT+GGG | 0.403541 | 1_2:-55588530 | Msa0078220:CDS |
| TTGAAGGTTCTGAATCCAAC+AGG | 0.407785 | 1_2:+55587383 | None:intergenic |
| GTGTGGTACTGAGCTTCATC+AGG | 0.410493 | 1_2:-55588431 | Msa0078220:intron |
| TTGTGATGCTTTGTTGTCAC+TGG | 0.418159 | 1_2:-55585071 | Msa0078220:CDS |
| CGTGAACATTGATTTGGAAC+TGG | 0.422905 | 1_2:-55585413 | Msa0078220:CDS |
| ACTAGCTCAAAATTCCTCTA+TGG | 0.423306 | 1_2:-55585874 | Msa0078220:CDS |
| GATATGAGGGAGAGTCTCTA+TGG | 0.435839 | 1_2:-55585046 | Msa0078220:CDS |
| GTATCCCTTTGGAGAAGGTT+AGG | 0.436779 | 1_2:-55585340 | Msa0078220:CDS |
| TGTTGTCACTGGCTGATATG+AGG | 0.437422 | 1_2:-55585060 | Msa0078220:CDS |
| GTTTGGGTGAGGAGTCTCCT+TGG | 0.451724 | 1_2:-55588531 | Msa0078220:CDS |
| TAGAAAGCTGTATCATTCTT+CGG | 0.452010 | 1_2:-55584966 | Msa0078220:CDS |
| GTATGAGAGGAGTTTGGGTG+AGG | 0.461310 | 1_2:-55588542 | Msa0078220:CDS |
| AATTTATTGTAAACATCATC+CGG | 0.467200 | 1_2:+55585220 | None:intergenic |
| ATCAATGTTCACGATATCAT+AGG | 0.469295 | 1_2:+55585423 | None:intergenic |
| ATTATGTATGAGAGGAGTTT+GGG | 0.471089 | 1_2:-55588547 | Msa0078220:CDS |
| GGTGAGGAGTCTCCTTGGGA+GGG | 0.476313 | 1_2:-55588526 | Msa0078220:CDS |
| AGAGAATATTCTACCCCTGT+TGG | 0.478060 | 1_2:-55587398 | Msa0078220:CDS |
| TCTTGATCTGCTGTGGCGGT+TGG | 0.480949 | 1_2:+55585363 | None:intergenic |
| GCAGATCAAGAGTATCCCTT+TGG | 0.481702 | 1_2:-55585351 | Msa0078220:CDS |
| GGGTGAGGAGTCTCCTTGGG+AGG | 0.482372 | 1_2:-55588527 | Msa0078220:CDS |
| GAGCAACACATTGCAATTTG+TGG | 0.492207 | 1_2:-55588734 | Msa0078220:CDS |
| CTGCCGGGAAGAAGTTGAAA+AGG | 0.500058 | 1_2:-55584862 | Msa0078220:CDS |
| ATTACCAATCCTAGCTCTGC+CGG | 0.507959 | 1_2:-55584878 | Msa0078220:CDS |
| TCTATGGATAAAACTGAGAA+AGG | 0.508864 | 1_2:-55585858 | Msa0078220:CDS |
| AACTTCTTCCCGGCAGAGCT+AGG | 0.522039 | 1_2:+55584869 | None:intergenic |
| ATCAATAGAAGATGATATTG+AGG | 0.522287 | 1_2:-55585017 | Msa0078220:CDS |
| ATAGCCTAACCTTCTCCAAA+GGG | 0.523725 | 1_2:+55585336 | None:intergenic |
| GTTGCTCCATTCGAATCCAT+TGG | 0.527285 | 1_2:+55588750 | None:intergenic |
| GCTCAGTACCACACAAAAGC+TGG | 0.530815 | 1_2:+55588440 | None:intergenic |
| TGAGGATGATACTTCAATGC+TGG | 0.532383 | 1_2:-55585802 | Msa0078220:CDS |
| GAAAGGCGTTGATAGCGAAA+TGG | 0.533293 | 1_2:-55585841 | Msa0078220:CDS |
| CAAGAGTATCCCTTTGGAGA+AGG | 0.539836 | 1_2:-55585345 | Msa0078220:CDS |
| TTTGTGGACACCCCAGAAGA+AGG | 0.540799 | 1_2:-55588718 | Msa0078220:CDS |
| GTTGTCACTGGCTGATATGA+GGG | 0.545553 | 1_2:-55585059 | Msa0078220:CDS |
| TTACCAATCCTAGCTCTGCC+GGG | 0.546566 | 1_2:-55584877 | Msa0078220:CDS |
| TCTCTCTGGCAATGGCAACC+AGG | 0.547917 | 1_2:-55588898 | None:intergenic |
| GCTTCACTTACAGATCTGCC+AGG | 0.550005 | 1_2:+55587254 | None:intergenic |
| CTTCCCGGCAGAGCTAGGAT+TGG | 0.554666 | 1_2:+55584874 | None:intergenic |
| AGAACCTTCAAAGCTTAACT+CGG | 0.555964 | 1_2:-55587371 | Msa0078220:CDS |
| TGATACTTCAATGCTGGAGA+TGG | 0.557586 | 1_2:-55585796 | Msa0078220:CDS |
| ATGATATTGAGGCATTAGAA+AGG | 0.558795 | 1_2:-55585006 | Msa0078220:CDS |
| AACGGATATTCCTTCTTCTG+GGG | 0.559930 | 1_2:+55588708 | None:intergenic |
| GTTGAAAAGGGCAACAAAGA+GGG | 0.561186 | 1_2:-55584849 | Msa0078220:CDS |
| TAACTCGGAATTCTTTGGTG+TGG | 0.564968 | 1_2:-55587356 | Msa0078220:CDS |
| ATTGAAAATGCTTGTTTGGG+TGG | 0.566174 | 1_2:-55588592 | Msa0078220:CDS |
| GTTTACGTGCATTCAAGCGA+TGG | 0.570568 | 1_2:-55588780 | Msa0078220:CDS |
| GTCTTCTAACAACGAATCTG+AGG | 0.572955 | 1_2:-55585931 | Msa0078220:CDS |
| CGGTTCTGCGTATCAGTGAA+AGG | 0.574157 | 1_2:-55584946 | Msa0078220:CDS |
| GGTTTGGAGTGTTGAAGAAG+TGG | 0.580380 | 1_2:-55588464 | Msa0078220:CDS |
| AATAGCCTAACCTTCTCCAA+AGG | 0.600517 | 1_2:+55585335 | None:intergenic |
| TGAAGTCCAATGGATTCGAA+TGG | 0.603454 | 1_2:-55588756 | Msa0078220:CDS |
| CTTCACTTACAGATCTGCCA+GGG | 0.605599 | 1_2:+55587255 | None:intergenic |
| AGATGTTAGCAGTGGAGCTG+AGG | 0.607643 | 1_2:-55585763 | Msa0078220:intron |
| AAAGGCAAACATTCCTGTTG+AGG | 0.608468 | 1_2:+55588487 | None:intergenic |
| GGGATACTCTTGATCTGCTG+TGG | 0.609125 | 1_2:+55585356 | None:intergenic |
| TGCCGGGAAGAAGTTGAAAA+GGG | 0.609205 | 1_2:-55584861 | Msa0078220:CDS |
| ATGATAAAAGATGTTAGCAG+TGG | 0.610343 | 1_2:-55585771 | Msa0078220:CDS |
| AAGCGATGGATGAAGTCCAA+TGG | 0.611498 | 1_2:-55588766 | Msa0078220:CDS |
| CTGTTGCTATTATGTATGAG+AGG | 0.614081 | 1_2:-55588555 | Msa0078220:CDS |
| GGAGTATTCTTCAATTACTG+AGG | 0.614549 | 1_2:-55585820 | Msa0078220:CDS |
| AGTTGAAAAGGGCAACAAAG+AGG | 0.617163 | 1_2:-55584850 | Msa0078220:CDS |
| ATTTGGAACTGGTACTTCAG+TGG | 0.622999 | 1_2:-55585402 | Msa0078220:CDS |
| AGCTGAAGATAACCCTCCCA+AGG | 0.629647 | 1_2:+55588514 | None:intergenic |
| ATACTCTTGATCTGCTGTGG+CGG | 0.640648 | 1_2:+55585359 | None:intergenic |
| TCTTCAACACTCCAAACCAA+AGG | 0.644717 | 1_2:+55588469 | None:intergenic |
| GCATTGTGTGAAATCAATGC+AGG | 0.646675 | 1_2:-55588682 | Msa0078220:CDS |
| TGAAATCAATGCAGGTGATG+TGG | 0.648395 | 1_2:-55588674 | Msa0078220:CDS |
| TTCGAGATAGATGATTACCA+TGG | 0.653774 | 1_2:-55587292 | Msa0078220:CDS |
| TGAAGGTTCTGAATCCAACA+GGG | 0.663792 | 1_2:+55587384 | None:intergenic |
| AAAATAAGGAGTTCAATCTG+TGG | 0.668743 | 1_2:+55585262 | None:intergenic |
| ATTCAATCATAAAACTGGTG+CGG | 0.668860 | 1_2:-55585976 | Msa0078220:CDS |
| GGGGAACCATGCCAAAACCA+TGG | 0.671012 | 1_2:+55587275 | None:intergenic |
| TTCGTTGTTAGAAGACAAAG+CGG | 0.673995 | 1_2:+55585938 | None:intergenic |
| TTCACTTACAGATCTGCCAG+GGG | 0.708708 | 1_2:+55587256 | None:intergenic |
| GAAGGTTCTGAATCCAACAG+GGG | 0.712164 | 1_2:+55587385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTATGCATTATTG+AGG | - | chr1_2:55585324-55585343 | Msa0078220:CDS | 15.0% |
| !! | AAATTCAATAAAAAAAAAGC+AGG | + | chr1_2:55585762-55585781 | None:intergenic | 15.0% |
| !! | ATTATTAAACAATACATGTA+TGG | + | chr1_2:55586813-55586832 | None:intergenic | 15.0% |
| !! | AACATTTAAAAACTACAAAA+TGG | + | chr1_2:55588120-55588139 | None:intergenic | 15.0% |
| !! | AGATGATGTATAATAAAATA+AGG | + | chr1_2:55588483-55588502 | None:intergenic | 15.0% |
| !!! | AACTTTTGATAAGGAAAAAT+GGG | + | chr1_2:55584892-55584911 | None:intergenic | 20.0% |
| !!! | AAACTTTTGATAAGGAAAAA+TGG | + | chr1_2:55584893-55584912 | None:intergenic | 20.0% |
| !!! | TTTAGCATAAACTTTTGATA+AGG | + | chr1_2:55584901-55584920 | None:intergenic | 20.0% |
| !! | CATTATGAGAGATTTAAATT+TGG | - | chr1_2:55585353-55585372 | Msa0078220:CDS | 20.0% |
| !! | AGTAATAACTAGCAAATTAA+GGG | + | chr1_2:55586542-55586561 | None:intergenic | 20.0% |
| !! | AAGTAATAACTAGCAAATTA+AGG | + | chr1_2:55586543-55586562 | None:intergenic | 20.0% |
| !!! | AGTGTTTTTAACAATAACAA+TGG | + | chr1_2:55586582-55586601 | None:intergenic | 20.0% |
| !! | GTGTATATTATCATTTATCA+TGG | + | chr1_2:55586754-55586773 | None:intergenic | 20.0% |
| !! | TTATACATTTGATAAGAAGA+GGG | + | chr1_2:55586878-55586897 | None:intergenic | 20.0% |
| !! | ATATGTTATTAGATTGTCAA+TGG | - | chr1_2:55587011-55587030 | Msa0078220:intron | 20.0% |
| !!! | ATTTAAAGTGTTTGTATTCT+TGG | - | chr1_2:55587107-55587126 | Msa0078220:intron | 20.0% |
| !!! | TTTAAAGTGTTTGTATTCTT+GGG | - | chr1_2:55587108-55587127 | Msa0078220:intron | 20.0% |
| !!! | TTGAAGTCTTTTTAAGTTTA+AGG | - | chr1_2:55587243-55587262 | Msa0078220:intron | 20.0% |
| !!! | ACCAATTTTTTTTATGTATC+TGG | - | chr1_2:55587269-55587288 | Msa0078220:CDS | 20.0% |
| !! | TCCAGATACATAAAAAAAAT+TGG | + | chr1_2:55587273-55587292 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTAACTTCCAC+TGG | - | chr1_2:55588020-55588039 | Msa0078220:intron | 20.0% |
| !! | TATTAAATACCTGTATCAAA+TGG | + | chr1_2:55588222-55588241 | None:intergenic | 20.0% |
| !! | ATACAGGTATTTAATACTTA+CGG | - | chr1_2:55588226-55588245 | Msa0078220:intron | 20.0% |
| !!! | ATTATACATCATCTTTTTAC+CGG | - | chr1_2:55588489-55588508 | Msa0078220:CDS | 20.0% |
| !! | AATTTATTGTAAACATCATC+CGG | + | chr1_2:55588511-55588530 | None:intergenic | 20.0% |
| ! | ATCATTGAAAATGCTTGTTT+GGG | - | chr1_2:55585133-55585152 | Msa0078220:CDS | 25.0% |
| ! | GAGATTTAAATTTGGACTAA+TGG | - | chr1_2:55585361-55585380 | Msa0078220:CDS | 25.0% |
| !! | AAGAAAACTTTTAGTCTGTT+TGG | + | chr1_2:55585703-55585722 | None:intergenic | 25.0% |
| ! | GATATATACTTGTGTGAAAA+TGG | - | chr1_2:55585727-55585746 | Msa0078220:intron | 25.0% |
| ! | TCACAATTATATCCATTGAA+AGG | - | chr1_2:55585968-55585987 | Msa0078220:CDS | 25.0% |
| ! | CACAATTATATCCATTGAAA+GGG | - | chr1_2:55585969-55585988 | Msa0078220:CDS | 25.0% |
| ! | TCACAATTATATCCATTGAA+AGG | - | chr1_2:55585968-55585987 | Msa0078220:CDS | 25.0% |
| ! | CACAATTATATCCATTGAAA+GGG | - | chr1_2:55585969-55585988 | Msa0078220:CDS | 25.0% |
| !! | ATTTTTAAACTCCCTTTCAA+TGG | + | chr1_2:55586092-55586111 | None:intergenic | 25.0% |
| ! | TTGAAAGGGAGTTTAAAAAT+TGG | - | chr1_2:55586092-55586111 | Msa0078220:intron | 25.0% |
| !! | GATCAGAAAATTTTCACAAA+AGG | + | chr1_2:55586251-55586270 | None:intergenic | 25.0% |
| ! | GTAATAACTAGCAAATTAAG+GGG | + | chr1_2:55586541-55586560 | None:intergenic | 25.0% |
| ! | AATGATAATATACACTGTCT+TGG | - | chr1_2:55586759-55586778 | Msa0078220:intron | 25.0% |
| ! | GTTATACATTTGATAAGAAG+AGG | + | chr1_2:55586879-55586898 | None:intergenic | 25.0% |
| !!! | CGTTTCATTATGACATTTTT+TGG | - | chr1_2:55586961-55586980 | Msa0078220:intron | 25.0% |
| !!! | TTCATTATGACATTTTTTGG+AGG | - | chr1_2:55586964-55586983 | Msa0078220:intron | 25.0% |
| !!! | TCAATACGTTTTAAAACTAC+CGG | - | chr1_2:55587065-55587084 | Msa0078220:intron | 25.0% |
| !!! | AGTCTTATATGATGATTTTG+AGG | - | chr1_2:55587213-55587232 | Msa0078220:intron | 25.0% |
| ! | TAGGATTAAAAAAACTGCAA+TGG | - | chr1_2:55587317-55587336 | Msa0078220:CDS | 25.0% |
| !!! | GAATTGTTTTTAGTACTACT+CGG | + | chr1_2:55587374-55587393 | None:intergenic | 25.0% |
| ! | GAGTAGTACTAAAAACAATT+CGG | - | chr1_2:55587373-55587392 | Msa0078220:CDS | 25.0% |
| ! | AGTAGTACTAAAAACAATTC+GGG | - | chr1_2:55587374-55587393 | Msa0078220:CDS | 25.0% |
| ! | ATTCTTCTGTTCTTAATTGT+TGG | + | chr1_2:55587428-55587447 | None:intergenic | 25.0% |
| !!! | ATTTCTGTTCAGTTTTGATT+TGG | + | chr1_2:55587491-55587510 | None:intergenic | 25.0% |
| ! | ATAAAGGGAAATCAAAATAG+AGG | + | chr1_2:55587597-55587616 | None:intergenic | 25.0% |
| ! | TTAGAGGGGATATAAATAAA+GGG | + | chr1_2:55587612-55587631 | None:intergenic | 25.0% |
| ! | AGTTATATTAGTCAGTTAGA+GGG | + | chr1_2:55587627-55587646 | None:intergenic | 25.0% |
| ! | TAGTTATATTAGTCAGTTAG+AGG | + | chr1_2:55587628-55587647 | None:intergenic | 25.0% |
| ! | ACTGTTAGAATAAATCAGTA+GGG | + | chr1_2:55587681-55587700 | None:intergenic | 25.0% |
| ! | AAATAAATGTATGCTATCTG+AGG | + | chr1_2:55588085-55588104 | None:intergenic | 25.0% |
| !! | CATTATAGTTTTCTTTGACA+TGG | - | chr1_2:55588181-55588200 | Msa0078220:intron | 25.0% |
| ! | TACAGGTATTTAATACTTAC+GGG | - | chr1_2:55588227-55588246 | Msa0078220:intron | 25.0% |
| ! | ATTTAATACTTACGGGATAT+TGG | - | chr1_2:55588234-55588253 | Msa0078220:intron | 25.0% |
| ! | TTTAATACTTACGGGATATT+GGG | - | chr1_2:55588235-55588254 | Msa0078220:intron | 25.0% |
| ! | TATTTCGAGATATCATTTGA+TGG | - | chr1_2:55588439-55588458 | Msa0078220:CDS | 25.0% |
| ! | GATATCATCATTCAAAAAAG+TGG | + | chr1_2:55588584-55588603 | None:intergenic | 25.0% |
| ! | ATCAATAGAAGATGATATTG+AGG | - | chr1_2:55588711-55588730 | Msa0078220:CDS | 25.0% |
| !! | CATAATTTCTGAGTTTTTGA+AGG | + | chr1_2:55588813-55588832 | None:intergenic | 25.0% |
| GATTTCACACAATGCTTTAA+CGG | + | chr1_2:55585041-55585060 | None:intergenic | 30.0% | |
| ATTGTAAGACAAGCTTTCTT+TGG | + | chr1_2:55585091-55585110 | None:intergenic | 30.0% | |
| GATCATTGAAAATGCTTGTT+TGG | - | chr1_2:55585132-55585151 | Msa0078220:CDS | 30.0% | |
| TATTATGTATGAGAGGAGTT+TGG | - | chr1_2:55585180-55585199 | Msa0078220:CDS | 30.0% | |
| ATTATGTATGAGAGGAGTTT+GGG | - | chr1_2:55585181-55585200 | Msa0078220:CDS | 30.0% | |
| TGGAACTATGACAATGTAAT+AGG | - | chr1_2:55585381-55585400 | Msa0078220:CDS | 30.0% | |
| GGAACTATGACAATGTAATA+GGG | - | chr1_2:55585382-55585401 | Msa0078220:CDS | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr1_2:55585525-55585544 | None:intergenic | 30.0% | |
| ACTTCTATGATAAGCGTTTA+TGG | - | chr1_2:55585648-55585667 | Msa0078220:intron | 30.0% | |
| CGCATTAAACTAAACGTTAA+AGG | + | chr1_2:55585800-55585819 | None:intergenic | 30.0% | |
| TTCAAAATACGAAAGCTTCA+AGG | + | chr1_2:55585857-55585876 | None:intergenic | 30.0% | |
| AAAGTTAAACTCCCTTTCAA+TGG | + | chr1_2:55585983-55586002 | None:intergenic | 30.0% | |
| ! | TTTCACGACTCTTCTTTTTA+AGG | - | chr1_2:55586179-55586198 | Msa0078220:intron | 30.0% |
| TTCTGATCTCTTATCATTGT+AGG | - | chr1_2:55586263-55586282 | Msa0078220:intron | 30.0% | |
| ! | AGATAAAGCTTTTGTCTATG+AGG | - | chr1_2:55586300-55586319 | Msa0078220:intron | 30.0% |
| ! | TCGAGAAGAAATAAGACTTT+TGG | + | chr1_2:55586413-55586432 | None:intergenic | 30.0% |
| ! | ATAGATGATTACCATGGTTT+TGG | - | chr1_2:55586442-55586461 | Msa0078220:intron | 30.0% |
| TAATGACTTGAGTTCATCTA+TGG | + | chr1_2:55586608-55586627 | None:intergenic | 30.0% | |
| GAAGAATCTTCATGCATATT+TGG | + | chr1_2:55586665-55586684 | None:intergenic | 30.0% | |
| !! | TGTATGGACTAGTAAAACTA+TGG | + | chr1_2:55586797-55586816 | None:intergenic | 30.0% |
| CATTCAATAGATTACAACCT+TGG | + | chr1_2:55586991-55587010 | None:intergenic | 30.0% | |
| TATGATCAAGCTACGTTAAT+TGG | + | chr1_2:55587041-55587060 | None:intergenic | 30.0% | |
| TCCAACAAAATAGTATACAC+CGG | + | chr1_2:55587087-55587106 | None:intergenic | 30.0% | |
| TTCTTGGGATTTCAAGAAAA+AGG | - | chr1_2:55587123-55587142 | Msa0078220:intron | 30.0% | |
| GGATTTCAAGAAAAAGGTTA+TGG | - | chr1_2:55587129-55587148 | Msa0078220:intron | 30.0% | |
| ! | TAGCTTGCAATTAGTTATCT+TGG | - | chr1_2:55587166-55587185 | Msa0078220:intron | 30.0% |
| ! | AGTTATCTTGGTGGTTTAAA+TGG | - | chr1_2:55587178-55587197 | Msa0078220:intron | 30.0% |
| TGGTTTAAATGGAAGAACTA+AGG | - | chr1_2:55587189-55587208 | Msa0078220:intron | 30.0% | |
| ! | ATGTTGTATGTGGTTTGTAT+AGG | - | chr1_2:55587298-55587317 | Msa0078220:CDS | 30.0% |
| GTAGTACTAAAAACAATTCG+GGG | - | chr1_2:55587375-55587394 | Msa0078220:CDS | 30.0% | |
| GAGAAATAGAAAAAACAAGC+AGG | - | chr1_2:55587453-55587472 | Msa0078220:intron | 30.0% | |
| !!! | AGTTTTGATTTGGCGATAAA+AGG | + | chr1_2:55587481-55587500 | None:intergenic | 30.0% |
| ! | AAGATAAAACTTTTGCGAAG+AGG | + | chr1_2:55587541-55587560 | None:intergenic | 30.0% |
| GTTAGAGGGGATATAAATAA+AGG | + | chr1_2:55587613-55587632 | None:intergenic | 30.0% | |
| GTTATATTAGTCAGTTAGAG+GGG | + | chr1_2:55587626-55587645 | None:intergenic | 30.0% | |
| CACTGTTAGAATAAATCAGT+AGG | + | chr1_2:55587682-55587701 | None:intergenic | 30.0% | |
| !! | CTACTGATTTATTCTAACAG+TGG | - | chr1_2:55587680-55587699 | Msa0078220:intron | 30.0% |
| TCCAGATTCAATCATAAAAC+TGG | - | chr1_2:55587747-55587766 | Msa0078220:intron | 30.0% | |
| !! | ACCAGTTTTATGATTGAATC+TGG | + | chr1_2:55587751-55587770 | None:intergenic | 30.0% |
| ATTCAATCATAAAACTGGTG+CGG | - | chr1_2:55587752-55587771 | Msa0078220:intron | 30.0% | |
| !! | TTTCTCAGTTTTATCCATAG+AGG | + | chr1_2:55587871-55587890 | None:intergenic | 30.0% |
| TCTATGGATAAAACTGAGAA+AGG | - | chr1_2:55587870-55587889 | Msa0078220:intron | 30.0% | |
| ATGATAAAAGATGTTAGCAG+TGG | - | chr1_2:55587957-55587976 | Msa0078220:intron | 30.0% | |
| GTATCAAATGGAAGAATAAG+AGG | + | chr1_2:55588210-55588229 | None:intergenic | 30.0% | |
| CTTATTCTTCCATTTGATAC+AGG | - | chr1_2:55588210-55588229 | Msa0078220:intron | 30.0% | |
| ATCAATGTTCACGATATCAT+AGG | + | chr1_2:55588308-55588327 | None:intergenic | 30.0% | |
| ! | TGATATCGTGAACATTGATT+TGG | - | chr1_2:55588309-55588328 | Msa0078220:intron | 30.0% |
| ! | CTCGAAATATTCAGAGTTTT+CGG | + | chr1_2:55588428-55588447 | None:intergenic | 30.0% |
| AAAATAAGGAGTTCAATCTG+TGG | + | chr1_2:55588469-55588488 | None:intergenic | 30.0% | |
| ! | CAAAGCATCACAAATTTCTT+TGG | + | chr1_2:55588650-55588669 | None:intergenic | 30.0% |
| ! | ATGATATTGAGGCATTAGAA+AGG | - | chr1_2:55588722-55588741 | Msa0078220:CDS | 30.0% |
| TAGAAAGCTGTATCATTCTT+CGG | - | chr1_2:55588762-55588781 | Msa0078220:CDS | 30.0% | |
| !! | TGATAAGGAAAAATGGGTTG+TGG | + | chr1_2:55584886-55584905 | None:intergenic | 35.0% |
| ! | TAACGGATATTCCTTCTTCT+GGG | + | chr1_2:55585024-55585043 | None:intergenic | 35.0% |
| ! | TTAACGGATATTCCTTCTTC+TGG | + | chr1_2:55585025-55585044 | None:intergenic | 35.0% |
| ATTGAAAATGCTTGTTTGGG+TGG | - | chr1_2:55585136-55585155 | Msa0078220:CDS | 35.0% | |
| ! | CTGTTGCTATTATGTATGAG+AGG | - | chr1_2:55585173-55585192 | Msa0078220:CDS | 35.0% |
| ! | TGTTTGTTGATTGCGAGTAA+AGG | - | chr1_2:55585408-55585427 | Msa0078220:CDS | 35.0% |
| ! | GTTTGTTGATTGCGAGTAAA+GGG | - | chr1_2:55585409-55585428 | Msa0078220:CDS | 35.0% |
| GACATAAACATTTGTGAGAC+TGG | - | chr1_2:55585465-55585484 | Msa0078220:CDS | 35.0% | |
| TTTAGAGAGCTTATGGAAAC+AGG | - | chr1_2:55585488-55585507 | Msa0078220:CDS | 35.0% | |
| ATTCACATTTCAATGAACCC+CGG | + | chr1_2:55585929-55585948 | None:intergenic | 35.0% | |
| ATTCACATTTCAATGAACCC+CGG | + | chr1_2:55585929-55585948 | None:intergenic | 35.0% | |
| AAAAATTGGCAGAAGAGACA+AGG | - | chr1_2:55586106-55586125 | Msa0078220:intron | 35.0% | |
| AGAACCTTCAAAGCTTAACT+CGG | - | chr1_2:55586357-55586376 | Msa0078220:intron | 35.0% | |
| ! | AATTCCGAGTTAAGCTTTGA+AGG | + | chr1_2:55586364-55586383 | None:intergenic | 35.0% |
| AAGCTTAACTCGGAATTCTT+TGG | - | chr1_2:55586367-55586386 | Msa0078220:intron | 35.0% | |
| TTCGAGATAGATGATTACCA+TGG | - | chr1_2:55586436-55586455 | Msa0078220:intron | 35.0% | |
| ! | CCATTCAGAATCCTTTTCTT+CGG | - | chr1_2:55586715-55586734 | Msa0078220:intron | 35.0% |
| ! | ATTTGTTCTTTTGCAGTTGC+AGG | + | chr1_2:55586937-55586956 | None:intergenic | 35.0% |
| ! | ACCGGTGTATACTATTTTGT+TGG | - | chr1_2:55587083-55587102 | Msa0078220:intron | 35.0% |
| CTTGCAATTAGTTATCTTGG+TGG | - | chr1_2:55587169-55587188 | Msa0078220:intron | 35.0% | |
| AAATCAGTAGGGCAGAATAA+GGG | + | chr1_2:55587670-55587689 | None:intergenic | 35.0% | |
| TAAATCAGTAGGGCAGAATA+AGG | + | chr1_2:55587671-55587690 | None:intergenic | 35.0% | |
| TTCGTTGTTAGAAGACAAAG+CGG | + | chr1_2:55587793-55587812 | None:intergenic | 35.0% | |
| ACTAGCTCAAAATTCCTCTA+TGG | - | chr1_2:55587854-55587873 | Msa0078220:intron | 35.0% | |
| ! | GGAGTATTCTTCAATTACTG+AGG | - | chr1_2:55587908-55587927 | Msa0078220:intron | 35.0% |
| ! | TGAAGTCCAATGGATTCGAA+TGG | - | chr1_2:55584972-55584991 | Msa0078220:CDS | 40.0% |
| GAGCAACACATTGCAATTTG+TGG | - | chr1_2:55584994-55585013 | Msa0078220:CDS | 40.0% | |
| AACGGATATTCCTTCTTCTG+GGG | + | chr1_2:55585023-55585042 | None:intergenic | 40.0% | |
| GCATTGTGTGAAATCAATGC+AGG | - | chr1_2:55585046-55585065 | Msa0078220:CDS | 40.0% | |
| TGAAATCAATGCAGGTGATG+TGG | - | chr1_2:55585054-55585073 | Msa0078220:CDS | 40.0% | |
| TGCTTGTTTGGGTGGTTATT+TGG | - | chr1_2:55585144-55585163 | Msa0078220:CDS | 40.0% | |
| GCTTGTTTGGGTGGTTATTT+GGG | - | chr1_2:55585145-55585164 | Msa0078220:CDS | 40.0% | |
| AAAGGCAAACATTCCTGTTG+AGG | + | chr1_2:55585244-55585263 | None:intergenic | 40.0% | |
| TCAACAGGAATGTTTGCCTT+TGG | - | chr1_2:55585243-55585262 | Msa0078220:CDS | 40.0% | |
| AGGAATGTTTGCCTTTGGTT+TGG | - | chr1_2:55585248-55585267 | Msa0078220:CDS | 40.0% | |
| TCTTCAACACTCCAAACCAA+AGG | + | chr1_2:55585262-55585281 | None:intergenic | 40.0% | |
| GAGTAAAGGGTTGTTTGTGT+TGG | - | chr1_2:55585422-55585441 | Msa0078220:CDS | 40.0% | |
| !! | AGACTGGTTTAGAGAGCTTA+TGG | - | chr1_2:55585481-55585500 | Msa0078220:CDS | 40.0% |
| TTCACATTTCAATGAACCCC+GGG | + | chr1_2:55585928-55585947 | None:intergenic | 40.0% | |
| TTCACATTTCAATGAACCCC+GGG | + | chr1_2:55585928-55585947 | None:intergenic | 40.0% | |
| ! | AAGCTTTTGTCTATGAGGAC+TGG | - | chr1_2:55586305-55586324 | Msa0078220:intron | 40.0% |
| AGAGAATATTCTACCCCTGT+TGG | - | chr1_2:55586330-55586349 | Msa0078220:intron | 40.0% | |
| !! | TGAAGGTTCTGAATCCAACA+GGG | + | chr1_2:55586347-55586366 | None:intergenic | 40.0% |
| !! | TTGAAGGTTCTGAATCCAAC+AGG | + | chr1_2:55586348-55586367 | None:intergenic | 40.0% |
| TAACTCGGAATTCTTTGGTG+TGG | - | chr1_2:55586372-55586391 | Msa0078220:intron | 40.0% | |
| !!! | TGATTACCATGGTTTTGGCA+TGG | - | chr1_2:55586447-55586466 | Msa0078220:intron | 40.0% |
| AGAACCATAGTAATCACCAG+AGG | + | chr1_2:55586499-55586518 | None:intergenic | 40.0% | |
| CCGAAGAAAAGGATTCTGAA+TGG | + | chr1_2:55586718-55586737 | None:intergenic | 40.0% | |
| CTCTTACTTCTCCGAAGAAA+AGG | + | chr1_2:55586729-55586748 | None:intergenic | 40.0% | |
| !!! | TGACATTTTTTGGAGGTCCA+AGG | - | chr1_2:55586971-55586990 | Msa0078220:intron | 40.0% |
| CTGGAAAGCAATGTTGTATG+TGG | - | chr1_2:55587288-55587307 | Msa0078220:CDS | 40.0% | |
| TTAGTACTACTCGGTCAGAT+TGG | + | chr1_2:55587365-55587384 | None:intergenic | 40.0% | |
| TGAGAATAGAATTCTCCCCA+AGG | - | chr1_2:55587511-55587530 | Msa0078220:intron | 40.0% | |
| GAGAATAGAATTCTCCCCAA+GGG | - | chr1_2:55587512-55587531 | Msa0078220:intron | 40.0% | |
| TCTGGAGAAGACAGTGTTAT+AGG | + | chr1_2:55587733-55587752 | None:intergenic | 40.0% | |
| GTCTTCTAACAACGAATCTG+AGG | - | chr1_2:55587797-55587816 | Msa0078220:intron | 40.0% | |
| TGAGGATGATACTTCAATGC+TGG | - | chr1_2:55587926-55587945 | Msa0078220:intron | 40.0% | |
| TGATACTTCAATGCTGGAGA+TGG | - | chr1_2:55587932-55587951 | Msa0078220:intron | 40.0% | |
| AACACAGACACGTAGATGAA+AGG | + | chr1_2:55588001-55588020 | None:intergenic | 40.0% | |
| AAGAGTAGAAGAGTGACTAC+TGG | + | chr1_2:55588152-55588171 | None:intergenic | 40.0% | |
| ! | GCTGCTTTGCTACATAGATA+TGG | - | chr1_2:55588262-55588281 | Msa0078220:intron | 40.0% |
| !! | CGTGAACATTGATTTGGAAC+TGG | - | chr1_2:55588315-55588334 | Msa0078220:intron | 40.0% |
| ! | ATTTGGAACTGGTACTTCAG+TGG | - | chr1_2:55588326-55588345 | Msa0078220:intron | 40.0% |
| ATAGCCTAACCTTCTCCAAA+GGG | + | chr1_2:55588395-55588414 | None:intergenic | 40.0% | |
| AATAGCCTAACCTTCTCCAA+AGG | + | chr1_2:55588396-55588415 | None:intergenic | 40.0% | |
| ! | TTGTGATGCTTTGTTGTCAC+TGG | - | chr1_2:55588657-55588676 | Msa0078220:CDS | 40.0% |
| AGTTGAAAAGGGCAACAAAG+AGG | - | chr1_2:55588878-55588897 | Msa0078220:intron | 40.0% | |
| GTTGAAAAGGGCAACAAAGA+GGG | - | chr1_2:55588879-55588898 | Msa0078220:intron | 40.0% | |
| GAGGTGTAAACATGCATACC+TGG | + | chr1_2:55584851-55584870 | None:intergenic | 45.0% | |
| GTTTACGTGCATTCAAGCGA+TGG | - | chr1_2:55584948-55584967 | Msa0078220:CDS | 45.0% | |
| AAGCGATGGATGAAGTCCAA+TGG | - | chr1_2:55584962-55584981 | Msa0078220:CDS | 45.0% | |
| GTTGCTCCATTCGAATCCAT+TGG | + | chr1_2:55584981-55585000 | None:intergenic | 45.0% | |
| ! | TCTTCAGCTTTTGCCTCAAC+AGG | - | chr1_2:55585228-55585247 | Msa0078220:CDS | 45.0% |
| !! | GGTTTGGAGTGTTGAAGAAG+TGG | - | chr1_2:55585264-55585283 | Msa0078220:CDS | 45.0% |
| !! | TGCTCTTCATTTGCTATGCC+CGG | - | chr1_2:55585907-55585926 | Msa0078220:CDS | 45.0% |
| !! | TGCTCTTCATTTGCTATGCC+CGG | - | chr1_2:55585907-55585926 | Msa0078220:CDS | 45.0% |
| !! | GAAGGTTCTGAATCCAACAG+GGG | + | chr1_2:55586346-55586365 | None:intergenic | 45.0% |
| TTCACTTACAGATCTGCCAG+GGG | + | chr1_2:55586475-55586494 | None:intergenic | 45.0% | |
| CTTCACTTACAGATCTGCCA+GGG | + | chr1_2:55586476-55586495 | None:intergenic | 45.0% | |
| AGATCTGTAAGTGAAGCCTC+TGG | - | chr1_2:55586480-55586499 | Msa0078220:intron | 45.0% | |
| GAAGCCTCTGGTGATTACTA+TGG | - | chr1_2:55586492-55586511 | Msa0078220:intron | 45.0% | |
| CTTGCAGCACATGGTTATCA+AGG | + | chr1_2:55586914-55586933 | None:intergenic | 45.0% | |
| TTTGCGAAGAGGAAACCCTT+GGG | + | chr1_2:55587530-55587549 | None:intergenic | 45.0% | |
| ! | TTTTGCGAAGAGGAAACCCT+TGG | + | chr1_2:55587531-55587550 | None:intergenic | 45.0% |
| !! | GAAAGGCGTTGATAGCGAAA+TGG | - | chr1_2:55587887-55587906 | Msa0078220:intron | 45.0% |
| GACTGATCATCACTTTCCAG+TGG | + | chr1_2:55588039-55588058 | None:intergenic | 45.0% | |
| ATACTCTTGATCTGCTGTGG+CGG | + | chr1_2:55588372-55588391 | None:intergenic | 45.0% | |
| !! | GCAGATCAAGAGTATCCCTT+TGG | - | chr1_2:55588377-55588396 | Msa0078220:intron | 45.0% |
| !! | CAAGAGTATCCCTTTGGAGA+AGG | - | chr1_2:55588383-55588402 | Msa0078220:intron | 45.0% |
| ! | GTATCCCTTTGGAGAAGGTT+AGG | - | chr1_2:55588388-55588407 | Msa0078220:intron | 45.0% |
| !!! | TTCAGAGTTTTCGGTGTCAC+TGG | + | chr1_2:55588419-55588438 | None:intergenic | 45.0% |
| ! | TGTTGTCACTGGCTGATATG+AGG | - | chr1_2:55588668-55588687 | Msa0078220:CDS | 45.0% |
| ! | GTTGTCACTGGCTGATATGA+GGG | - | chr1_2:55588669-55588688 | Msa0078220:CDS | 45.0% |
| GATATGAGGGAGAGTCTCTA+TGG | - | chr1_2:55588682-55588701 | Msa0078220:CDS | 45.0% | |
| !! | ATTACCAATCCTAGCTCTGC+CGG | - | chr1_2:55588850-55588869 | Msa0078220:intron | 45.0% |
| TGCCGGGAAGAAGTTGAAAA+GGG | - | chr1_2:55588867-55588886 | Msa0078220:intron | 45.0% | |
| ! | TGCCCTTTTCAACTTCTTCC+CGG | + | chr1_2:55588872-55588891 | None:intergenic | 45.0% |
| !! | AATAATAATAATAATAATTG+TGG | - | chr1_2:55586830-55586849 | Msa0078220:intron | 5.0% |
| GTTGTGGCGAAAATCGAGAG+AGG | + | chr1_2:55584870-55584889 | None:intergenic | 50.0% | |
| TTTGTGGACACCCCAGAAGA+AGG | - | chr1_2:55585010-55585029 | Msa0078220:CDS | 50.0% | |
| GTATGAGAGGAGTTTGGGTG+AGG | - | chr1_2:55585186-55585205 | Msa0078220:CDS | 50.0% | |
| TTTGGGTGAGGAGTCTCCTT+GGG | - | chr1_2:55585198-55585217 | Msa0078220:CDS | 50.0% | |
| AGCTGAAGATAACCCTCCCA+AGG | + | chr1_2:55585217-55585236 | None:intergenic | 50.0% | |
| ! | GAAGTGGACCAGCTTTTGTG+TGG | - | chr1_2:55585280-55585299 | Msa0078220:CDS | 50.0% |
| GCTCAGTACCACACAAAAGC+TGG | + | chr1_2:55585291-55585310 | None:intergenic | 50.0% | |
| ! | GTGTGGTACTGAGCTTCATC+AGG | - | chr1_2:55585297-55585316 | Msa0078220:CDS | 50.0% |
| !! | GCTCTTCATTTGCTATGCCC+GGG | - | chr1_2:55585908-55585927 | Msa0078220:CDS | 50.0% |
| !! | CTCTTCATTTGCTATGCCCG+GGG | - | chr1_2:55585909-55585928 | Msa0078220:CDS | 50.0% |
| !! | GCTCTTCATTTGCTATGCCC+GGG | - | chr1_2:55585908-55585927 | Msa0078220:CDS | 50.0% |
| !! | CTCTTCATTTGCTATGCCCG+GGG | - | chr1_2:55585909-55585928 | Msa0078220:CDS | 50.0% |
| GCTTCACTTACAGATCTGCC+AGG | + | chr1_2:55586477-55586496 | None:intergenic | 50.0% | |
| TTGCGAAGAGGAAACCCTTG+GGG | + | chr1_2:55587529-55587548 | None:intergenic | 50.0% | |
| AGATGTTAGCAGTGGAGCTG+AGG | - | chr1_2:55587965-55587984 | Msa0078220:intron | 50.0% | |
| GGGATACTCTTGATCTGCTG+TGG | + | chr1_2:55588375-55588394 | None:intergenic | 50.0% | |
| CGGTTCTGCGTATCAGTGAA+AGG | - | chr1_2:55588782-55588801 | Msa0078220:CDS | 50.0% | |
| !! | TTACCAATCCTAGCTCTGCC+GGG | - | chr1_2:55588851-55588870 | Msa0078220:intron | 50.0% |
| CTGCCGGGAAGAAGTTGAAA+AGG | - | chr1_2:55588866-55588885 | Msa0078220:intron | 50.0% | |
| GTTTGGGTGAGGAGTCTCCT+TGG | - | chr1_2:55585197-55585216 | Msa0078220:CDS | 55.0% | |
| GGGGAACCATGCCAAAACCA+TGG | + | chr1_2:55586456-55586475 | None:intergenic | 55.0% | |
| !!! | TGGTTTTGGCATGGTTCCCC+TGG | - | chr1_2:55586456-55586475 | Msa0078220:intron | 55.0% |
| AGTTGCAGGCTTGCAGCACA+TGG | + | chr1_2:55586923-55586942 | None:intergenic | 55.0% | |
| TCTTGATCTGCTGTGGCGGT+TGG | + | chr1_2:55588368-55588387 | None:intergenic | 55.0% | |
| AACTTCTTCCCGGCAGAGCT+AGG | + | chr1_2:55588862-55588881 | None:intergenic | 55.0% | |
| GGTGAGGAGTCTCCTTGGGA+GGG | - | chr1_2:55585202-55585221 | Msa0078220:CDS | 60.0% | |
| CTTCCCGGCAGAGCTAGGAT+TGG | + | chr1_2:55588857-55588876 | None:intergenic | 60.0% | |
| GGGTGAGGAGTCTCCTTGGG+AGG | - | chr1_2:55585201-55585220 | Msa0078220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55584841 | 55588909 | 55584841 | ID=Msa0078220;Name=Msa0078220 |
| chr1_2 | mRNA | 55584841 | 55588909 | 55584841 | ID=Msa0078220-mRNA-1;Parent=Msa0078220;Name=Msa0078220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.25|0.2|0.8|1|1|5|0|497 |
| chr1_2 | exon | 55588899 | 55588909 | 55588899 | ID=Msa0078220-mRNA-1:exon:17342;Parent=Msa0078220-mRNA-1 |
| chr1_2 | exon | 55588432 | 55588804 | 55588432 | ID=Msa0078220-mRNA-1:exon:17341;Parent=Msa0078220-mRNA-1 |
| chr1_2 | exon | 55587265 | 55587461 | 55587265 | ID=Msa0078220-mRNA-1:exon:17340;Parent=Msa0078220-mRNA-1 |
| chr1_2 | exon | 55585764 | 55585998 | 55585764 | ID=Msa0078220-mRNA-1:exon:17339;Parent=Msa0078220-mRNA-1 |
| chr1_2 | exon | 55584841 | 55585518 | 55584841 | ID=Msa0078220-mRNA-1:exon:17338;Parent=Msa0078220-mRNA-1 |
| chr1_2 | CDS | 55588899 | 55588909 | 55588899 | ID=Msa0078220-mRNA-1:cds;Parent=Msa0078220-mRNA-1 |
| chr1_2 | CDS | 55588432 | 55588804 | 55588432 | ID=Msa0078220-mRNA-1:cds;Parent=Msa0078220-mRNA-1 |
| chr1_2 | CDS | 55587265 | 55587461 | 55587265 | ID=Msa0078220-mRNA-1:cds;Parent=Msa0078220-mRNA-1 |
| chr1_2 | CDS | 55585764 | 55585998 | 55585764 | ID=Msa0078220-mRNA-1:cds;Parent=Msa0078220-mRNA-1 |
| chr1_2 | CDS | 55584841 | 55585518 | 55584841 | ID=Msa0078220-mRNA-1:cds;Parent=Msa0078220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
