AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438170 MtrunA17_Chr1g0188461 95.171 497 24 0 1 497 1 497 0.0 909
Msa1438170 MtrunA17_Chr4g0042701 29.798 198 125 6 6 197 55 244 5.95e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438170 AT3G56570.1 54.851 536 195 9 1 495 1 530 0.0 540
Msa1438170 AT3G56570.2 54.749 537 195 10 1 495 1 531 0.0 535
Msa1438170 AT1G14030.1 27.638 199 128 6 6 197 49 238 2.80e-11 66.2

Find 100 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACGGATATTCCTTCTTC+TGG 0.208879 tig0028517:+18607 None:intergenic
TGCTTGTTTGGGTGGTTATT+TGG 0.212284 tig0028517:-18485 Msa1438170:CDS
ATTTAATACTTACGGGATAT+TGG 0.228032 tig0028517:-15396 Msa1438170:CDS
CAAAGCATCACAAATTTCTT+TGG 0.259751 tig0028517:+14983 None:intergenic
ATTGTAAGACAAGCTTTCTT+TGG 0.277640 tig0028517:+18541 None:intergenic
ATAGATGATTACCATGGTTT+TGG 0.280289 tig0028517:-17187 Msa1438170:CDS
GATTTCACACAATGCTTTAA+CGG 0.292015 tig0028517:+18591 None:intergenic
GCTTGTTTGGGTGGTTATTT+GGG 0.306425 tig0028517:-18484 Msa1438170:CDS
AAGCTTAACTCGGAATTCTT+TGG 0.307286 tig0028517:-17262 Msa1438170:CDS
GATCATTGAAAATGCTTGTT+TGG 0.311113 tig0028517:-18497 Msa1438170:CDS
TGATATCGTGAACATTGATT+TGG 0.321625 tig0028517:-15321 Msa1438170:CDS
TCGAGAAGAAATAAGACTTT+TGG 0.326128 tig0028517:+17219 None:intergenic
TTTAATACTTACGGGATATT+GGG 0.328807 tig0028517:-15395 Msa1438170:CDS
GCTGCTTTGCTACATAGATA+TGG 0.329797 tig0028517:-15368 Msa1438170:CDS
TAACGGATATTCCTTCTTCT+GGG 0.338446 tig0028517:+18608 None:intergenic
AGATGATGTATAATAAAATA+AGG 0.350807 tig0028517:+15150 None:intergenic
TCAACAGGAATGTTTGCCTT+TGG 0.352496 tig0028517:-18386 Msa1438170:CDS
TATTATGTATGAGAGGAGTT+TGG 0.353787 tig0028517:-18449 Msa1438170:CDS
TACAGGTATTTAATACTTAC+GGG 0.360220 tig0028517:-15403 Msa1438170:intron
TCCAGATTCAATCATAAAAC+TGG 0.369547 tig0028517:-15883 Msa1438170:intron
AATTCCGAGTTAAGCTTTGA+AGG 0.381928 tig0028517:+17268 None:intergenic
AGGAATGTTTGCCTTTGGTT+TGG 0.382903 tig0028517:-18381 Msa1438170:CDS
TATTTCGAGATATCATTTGA+TGG 0.393572 tig0028517:-15191 Msa1438170:CDS
ATCATTGAAAATGCTTGTTT+GGG 0.394754 tig0028517:-18496 Msa1438170:CDS
ATACAGGTATTTAATACTTA+CGG 0.399560 tig0028517:-15404 Msa1438170:intron
TTTGGGTGAGGAGTCTCCTT+GGG 0.403541 tig0028517:-18431 Msa1438170:CDS
TTGAAGGTTCTGAATCCAAC+AGG 0.407785 tig0028517:+17284 None:intergenic
GTGTGGTACTGAGCTTCATC+AGG 0.410493 tig0028517:-18332 Msa1438170:intron
TTGTGATGCTTTGTTGTCAC+TGG 0.418159 tig0028517:-14973 Msa1438170:CDS
CGTGAACATTGATTTGGAAC+TGG 0.422905 tig0028517:-15315 Msa1438170:CDS
ACTAGCTCAAAATTCCTCTA+TGG 0.423306 tig0028517:-15776 Msa1438170:CDS
GATATGAGGGAGAGTCTCTA+TGG 0.435839 tig0028517:-14948 Msa1438170:CDS
GTATCCCTTTGGAGAAGGTT+AGG 0.436779 tig0028517:-15242 Msa1438170:CDS
TGTTGTCACTGGCTGATATG+AGG 0.437422 tig0028517:-14962 Msa1438170:CDS
GTTTGGGTGAGGAGTCTCCT+TGG 0.451724 tig0028517:-18432 Msa1438170:CDS
TAGAAAGCTGTATCATTCTT+CGG 0.452010 tig0028517:-14868 Msa1438170:CDS
GTATGAGAGGAGTTTGGGTG+AGG 0.461310 tig0028517:-18443 Msa1438170:CDS
AATTTATTGTAAACATCATC+CGG 0.467200 tig0028517:+15122 None:intergenic
ATCAATGTTCACGATATCAT+AGG 0.469295 tig0028517:+15325 None:intergenic
ATTATGTATGAGAGGAGTTT+GGG 0.471089 tig0028517:-18448 Msa1438170:CDS
GGTGAGGAGTCTCCTTGGGA+GGG 0.476313 tig0028517:-18427 Msa1438170:CDS
AGAGAATATTCTACCCCTGT+TGG 0.478060 tig0028517:-17299 Msa1438170:CDS
TCTTGATCTGCTGTGGCGGT+TGG 0.480949 tig0028517:+15265 None:intergenic
GCAGATCAAGAGTATCCCTT+TGG 0.481702 tig0028517:-15253 Msa1438170:CDS
GGGTGAGGAGTCTCCTTGGG+AGG 0.482372 tig0028517:-18428 Msa1438170:CDS
GAGCAACACATTGCAATTTG+TGG 0.492207 tig0028517:-18635 Msa1438170:CDS
CTGCCGGGAAGAAGTTGAAA+AGG 0.500058 tig0028517:-14764 Msa1438170:CDS
ATTACCAATCCTAGCTCTGC+CGG 0.507959 tig0028517:-14780 Msa1438170:CDS
TCTATGGATAAAACTGAGAA+AGG 0.508864 tig0028517:-15760 Msa1438170:CDS
AACTTCTTCCCGGCAGAGCT+AGG 0.522039 tig0028517:+14771 None:intergenic
ATCAATAGAAGATGATATTG+AGG 0.522287 tig0028517:-14919 Msa1438170:CDS
ATAGCCTAACCTTCTCCAAA+GGG 0.523725 tig0028517:+15238 None:intergenic
GTTGCTCCATTCGAATCCAT+TGG 0.527285 tig0028517:+18651 None:intergenic
GCTCAGTACCACACAAAAGC+TGG 0.530815 tig0028517:+18341 None:intergenic
TGAGGATGATACTTCAATGC+TGG 0.532383 tig0028517:-15704 Msa1438170:CDS
GAAAGGCGTTGATAGCGAAA+TGG 0.533293 tig0028517:-15743 Msa1438170:CDS
CAAGAGTATCCCTTTGGAGA+AGG 0.539836 tig0028517:-15247 Msa1438170:CDS
TTTGTGGACACCCCAGAAGA+AGG 0.540799 tig0028517:-18619 Msa1438170:CDS
GTTGTCACTGGCTGATATGA+GGG 0.545553 tig0028517:-14961 Msa1438170:CDS
TTACCAATCCTAGCTCTGCC+GGG 0.546566 tig0028517:-14779 Msa1438170:CDS
TCTCTCTGGCAATGGCAACC+AGG 0.547917 tig0028517:-18799 None:intergenic
GCTTCACTTACAGATCTGCC+AGG 0.550005 tig0028517:+17155 None:intergenic
CTTCCCGGCAGAGCTAGGAT+TGG 0.554666 tig0028517:+14776 None:intergenic
AGAACCTTCAAAGCTTAACT+CGG 0.555964 tig0028517:-17272 Msa1438170:CDS
TGATACTTCAATGCTGGAGA+TGG 0.557586 tig0028517:-15698 Msa1438170:CDS
ATGATATTGAGGCATTAGAA+AGG 0.558795 tig0028517:-14908 Msa1438170:CDS
AACGGATATTCCTTCTTCTG+GGG 0.559930 tig0028517:+18609 None:intergenic
GTTGAAAAGGGCAACAAAGA+GGG 0.561186 tig0028517:-14751 Msa1438170:CDS
TAACTCGGAATTCTTTGGTG+TGG 0.564968 tig0028517:-17257 Msa1438170:CDS
ATTGAAAATGCTTGTTTGGG+TGG 0.566174 tig0028517:-18493 Msa1438170:CDS
GTTTACGTGCATTCAAGCGA+TGG 0.570568 tig0028517:-18681 Msa1438170:CDS
GTCTTCTAACAACGAATCTG+AGG 0.572955 tig0028517:-15833 Msa1438170:CDS
CGGTTCTGCGTATCAGTGAA+AGG 0.574157 tig0028517:-14848 Msa1438170:CDS
GGTTTGGAGTGTTGAAGAAG+TGG 0.580380 tig0028517:-18365 Msa1438170:CDS
AATAGCCTAACCTTCTCCAA+AGG 0.600517 tig0028517:+15237 None:intergenic
TGAAGTCCAATGGATTCGAA+TGG 0.603454 tig0028517:-18657 Msa1438170:CDS
CTTCACTTACAGATCTGCCA+GGG 0.605599 tig0028517:+17156 None:intergenic
AGATGTTAGCAGTGGAGCTG+AGG 0.607643 tig0028517:-15665 Msa1438170:intron
AAAGGCAAACATTCCTGTTG+AGG 0.608468 tig0028517:+18388 None:intergenic
GGGATACTCTTGATCTGCTG+TGG 0.609125 tig0028517:+15258 None:intergenic
TGCCGGGAAGAAGTTGAAAA+GGG 0.609205 tig0028517:-14763 Msa1438170:CDS
ATGATAAAAGATGTTAGCAG+TGG 0.610343 tig0028517:-15673 Msa1438170:CDS
AAGCGATGGATGAAGTCCAA+TGG 0.611498 tig0028517:-18667 Msa1438170:CDS
CTGTTGCTATTATGTATGAG+AGG 0.614081 tig0028517:-18456 Msa1438170:CDS
GGAGTATTCTTCAATTACTG+AGG 0.614549 tig0028517:-15722 Msa1438170:CDS
AGTTGAAAAGGGCAACAAAG+AGG 0.617163 tig0028517:-14752 Msa1438170:CDS
ATTTGGAACTGGTACTTCAG+TGG 0.622999 tig0028517:-15304 Msa1438170:CDS
AGCTGAAGATAACCCTCCCA+AGG 0.629647 tig0028517:+18415 None:intergenic
ATACTCTTGATCTGCTGTGG+CGG 0.640648 tig0028517:+15261 None:intergenic
TCTTCAACACTCCAAACCAA+AGG 0.644717 tig0028517:+18370 None:intergenic
GCATTGTGTGAAATCAATGC+AGG 0.646675 tig0028517:-18583 Msa1438170:CDS
TGAAATCAATGCAGGTGATG+TGG 0.648395 tig0028517:-18575 Msa1438170:CDS
TTCGAGATAGATGATTACCA+TGG 0.653774 tig0028517:-17193 Msa1438170:CDS
TGAAGGTTCTGAATCCAACA+GGG 0.663792 tig0028517:+17285 None:intergenic
AAAATAAGGAGTTCAATCTG+TGG 0.668743 tig0028517:+15164 None:intergenic
ATTCAATCATAAAACTGGTG+CGG 0.668860 tig0028517:-15878 Msa1438170:CDS
GGGGAACCATGCCAAAACCA+TGG 0.671012 tig0028517:+17176 None:intergenic
TTCGTTGTTAGAAGACAAAG+CGG 0.673995 tig0028517:+15840 None:intergenic
TTCACTTACAGATCTGCCAG+GGG 0.708708 tig0028517:+17157 None:intergenic
GAAGGTTCTGAATCCAACAG+GGG 0.712164 tig0028517:+17286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTATGCATTATTG+AGG - tig0028517:15226-15245 Msa1438170:CDS 15.0%
!! AAATTCAATAAAAAAAAAGC+AGG + tig0028517:15664-15683 None:intergenic 15.0%
!! ATTATTAAACAATACATGTA+TGG + tig0028517:16715-16734 None:intergenic 15.0%
!! AACATTTAAAAACTACAAAA+TGG + tig0028517:18021-18040 None:intergenic 15.0%
!! AGATGATGTATAATAAAATA+AGG + tig0028517:18384-18403 None:intergenic 15.0%
!!! AACTTTTGATAAGGAAAAAT+GGG + tig0028517:14794-14813 None:intergenic 20.0%
!!! AAACTTTTGATAAGGAAAAA+TGG + tig0028517:14795-14814 None:intergenic 20.0%
!!! TTTAGCATAAACTTTTGATA+AGG + tig0028517:14803-14822 None:intergenic 20.0%
!! CATTATGAGAGATTTAAATT+TGG - tig0028517:15255-15274 Msa1438170:CDS 20.0%
!! AGTAATAACTAGCAAATTAA+GGG + tig0028517:16444-16463 None:intergenic 20.0%
!! AAGTAATAACTAGCAAATTA+AGG + tig0028517:16445-16464 None:intergenic 20.0%
!!! AGTGTTTTTAACAATAACAA+TGG + tig0028517:16484-16503 None:intergenic 20.0%
!! GTGTATATTATCATTTATCA+TGG + tig0028517:16656-16675 None:intergenic 20.0%
!! TTATACATTTGATAAGAAGA+GGG + tig0028517:16780-16799 None:intergenic 20.0%
!! ATATGTTATTAGATTGTCAA+TGG - tig0028517:16913-16932 Msa1438170:intron 20.0%
!!! ATTTAAAGTGTTTGTATTCT+TGG - tig0028517:17009-17028 Msa1438170:intron 20.0%
!!! TTTAAAGTGTTTGTATTCTT+GGG - tig0028517:17010-17029 Msa1438170:intron 20.0%
!!! TTGAAGTCTTTTTAAGTTTA+AGG - tig0028517:17145-17164 Msa1438170:intron 20.0%
!!! TACCAATTTTTTTATGTATC+TGG - tig0028517:17170-17189 Msa1438170:CDS 20.0%
!! TTCCAGATACATAAAAAAAT+TGG + tig0028517:17175-17194 None:intergenic 20.0%
!!! TTTTTTTTTTTAACTTCCAC+TGG - tig0028517:17921-17940 Msa1438170:intron 20.0%
!! TATTAAATACCTGTATCAAA+TGG + tig0028517:18123-18142 None:intergenic 20.0%
!! ATACAGGTATTTAATACTTA+CGG - tig0028517:18127-18146 Msa1438170:intron 20.0%
!!! ATTATACATCATCTTTTTAC+CGG - tig0028517:18390-18409 Msa1438170:CDS 20.0%
!! AATTTATTGTAAACATCATC+CGG + tig0028517:18412-18431 None:intergenic 20.0%
! ATCATTGAAAATGCTTGTTT+GGG - tig0028517:15035-15054 Msa1438170:CDS 25.0%
! GAGATTTAAATTTGGACTAA+TGG - tig0028517:15263-15282 Msa1438170:CDS 25.0%
!! AAGAAAACTTTTAGTCTGTT+TGG + tig0028517:15605-15624 None:intergenic 25.0%
! GATATATACTTGTGTGAAAA+TGG - tig0028517:15629-15648 Msa1438170:intron 25.0%
! TCACAATTATATCCATTGAA+AGG - tig0028517:15870-15889 Msa1438170:CDS 25.0%
! CACAATTATATCCATTGAAA+GGG - tig0028517:15871-15890 Msa1438170:CDS 25.0%
! TCACAATTATATCCATTGAA+AGG - tig0028517:15870-15889 Msa1438170:CDS 25.0%
! CACAATTATATCCATTGAAA+GGG - tig0028517:15871-15890 Msa1438170:CDS 25.0%
!! ATTTTTAAACTCCCTTTCAA+TGG + tig0028517:15994-16013 None:intergenic 25.0%
! TTGAAAGGGAGTTTAAAAAT+TGG - tig0028517:15994-16013 Msa1438170:intron 25.0%
!! GATCAGAAAATTTTCACAAA+AGG + tig0028517:16153-16172 None:intergenic 25.0%
! GTAATAACTAGCAAATTAAG+GGG + tig0028517:16443-16462 None:intergenic 25.0%
! AATGATAATATACACTGTCT+TGG - tig0028517:16661-16680 Msa1438170:intron 25.0%
! GTTATACATTTGATAAGAAG+AGG + tig0028517:16781-16800 None:intergenic 25.0%
!!! CGTTTCATTATGACATTTTT+TGG - tig0028517:16863-16882 Msa1438170:intron 25.0%
!!! TTCATTATGACATTTTTTGG+AGG - tig0028517:16866-16885 Msa1438170:intron 25.0%
!!! TCAATACGTTTTAAAACTAC+CGG - tig0028517:16967-16986 Msa1438170:intron 25.0%
!!! AGTCTTATATGATGATTTTG+AGG - tig0028517:17115-17134 Msa1438170:intron 25.0%
! TAGGATTAAAAAAACTGCAA+TGG - tig0028517:17218-17237 Msa1438170:CDS 25.0%
!!! GAATTGTTTTTAGTACTACT+CGG + tig0028517:17275-17294 None:intergenic 25.0%
! GAGTAGTACTAAAAACAATT+CGG - tig0028517:17274-17293 Msa1438170:CDS 25.0%
! AGTAGTACTAAAAACAATTC+GGG - tig0028517:17275-17294 Msa1438170:CDS 25.0%
! ATTCTTCTGTTCTTAATTGT+TGG + tig0028517:17329-17348 None:intergenic 25.0%
!!! ATTTCTGTTCAGTTTTGATT+TGG + tig0028517:17392-17411 None:intergenic 25.0%
! ATAAAGGGAAATCAAAATAG+AGG + tig0028517:17498-17517 None:intergenic 25.0%
! TTAGAGGGGATATAAATAAA+GGG + tig0028517:17513-17532 None:intergenic 25.0%
! AGTTATATTAGTCAGTTAGA+GGG + tig0028517:17528-17547 None:intergenic 25.0%
! TAGTTATATTAGTCAGTTAG+AGG + tig0028517:17529-17548 None:intergenic 25.0%
! ACTGTTAGAATAAATCAGTA+GGG + tig0028517:17582-17601 None:intergenic 25.0%
! AAATAAATGTATGCTATCTG+AGG + tig0028517:17986-18005 None:intergenic 25.0%
!! CATTATAGTTTTCTTTGACA+TGG - tig0028517:18082-18101 Msa1438170:intron 25.0%
! TACAGGTATTTAATACTTAC+GGG - tig0028517:18128-18147 Msa1438170:intron 25.0%
! ATTTAATACTTACGGGATAT+TGG - tig0028517:18135-18154 Msa1438170:intron 25.0%
! TTTAATACTTACGGGATATT+GGG - tig0028517:18136-18155 Msa1438170:intron 25.0%
! TATTTCGAGATATCATTTGA+TGG - tig0028517:18340-18359 Msa1438170:CDS 25.0%
! GATATCATCATTCAAAAAAG+TGG + tig0028517:18485-18504 None:intergenic 25.0%
! ATCAATAGAAGATGATATTG+AGG - tig0028517:18612-18631 Msa1438170:CDS 25.0%
!! CATAATTTCTGAGTTTTTGA+AGG + tig0028517:18714-18733 None:intergenic 25.0%
GATTTCACACAATGCTTTAA+CGG + tig0028517:14943-14962 None:intergenic 30.0%
ATTGTAAGACAAGCTTTCTT+TGG + tig0028517:14993-15012 None:intergenic 30.0%
GATCATTGAAAATGCTTGTT+TGG - tig0028517:15034-15053 Msa1438170:CDS 30.0%
TATTATGTATGAGAGGAGTT+TGG - tig0028517:15082-15101 Msa1438170:CDS 30.0%
ATTATGTATGAGAGGAGTTT+GGG - tig0028517:15083-15102 Msa1438170:CDS 30.0%
TGGAACTATGACAATGTAAT+AGG - tig0028517:15283-15302 Msa1438170:CDS 30.0%
GGAACTATGACAATGTAATA+GGG - tig0028517:15284-15303 Msa1438170:CDS 30.0%
AATAAGCTGAAAACAGCTTA+TGG + tig0028517:15427-15446 None:intergenic 30.0%
ACTTCTATGATAAGCGTTTA+TGG - tig0028517:15550-15569 Msa1438170:intron 30.0%
CGCATTAAACTAAACGTTAA+AGG + tig0028517:15702-15721 None:intergenic 30.0%
TTCAAAATACGAAAGCTTCA+AGG + tig0028517:15759-15778 None:intergenic 30.0%
AAAGTTAAACTCCCTTTCAA+TGG + tig0028517:15885-15904 None:intergenic 30.0%
! TTTCACGACTCTTCTTTTTA+AGG - tig0028517:16081-16100 Msa1438170:intron 30.0%
TTCTGATCTCTTATCATTGT+AGG - tig0028517:16165-16184 Msa1438170:intron 30.0%
! AGATAAAGCTTTTGTCTATG+AGG - tig0028517:16202-16221 Msa1438170:intron 30.0%
! TCGAGAAGAAATAAGACTTT+TGG + tig0028517:16315-16334 None:intergenic 30.0%
! ATAGATGATTACCATGGTTT+TGG - tig0028517:16344-16363 Msa1438170:intron 30.0%
TAATGACTTGAGTTCATCTA+TGG + tig0028517:16510-16529 None:intergenic 30.0%
GAAGAATCTTCATGCATATT+TGG + tig0028517:16567-16586 None:intergenic 30.0%
!! TGTATGGACTAGTAAAACTA+TGG + tig0028517:16699-16718 None:intergenic 30.0%
CATTCAATAGATTACAACCT+TGG + tig0028517:16893-16912 None:intergenic 30.0%
TATGATCAAGCTACGTTAAT+TGG + tig0028517:16943-16962 None:intergenic 30.0%
TCCAACAAAATAGTATACAC+CGG + tig0028517:16989-17008 None:intergenic 30.0%
TTCTTGGGATTTCAAGAAAA+AGG - tig0028517:17025-17044 Msa1438170:intron 30.0%
GGATTTCAAGAAAAAGGTTA+TGG - tig0028517:17031-17050 Msa1438170:intron 30.0%
! TAGCTTGCAATTAGTTATCT+TGG - tig0028517:17068-17087 Msa1438170:intron 30.0%
! AGTTATCTTGGTGGTTTAAA+TGG - tig0028517:17080-17099 Msa1438170:intron 30.0%
TGGTTTAAATGGAAGAACTA+AGG - tig0028517:17091-17110 Msa1438170:intron 30.0%
! ATGTTGTATGTGGTTTGTAT+AGG - tig0028517:17199-17218 Msa1438170:CDS 30.0%
GTAGTACTAAAAACAATTCG+GGG - tig0028517:17276-17295 Msa1438170:CDS 30.0%
GAGAAATAGAAAAAACAAGC+AGG - tig0028517:17354-17373 Msa1438170:intron 30.0%
!!! AGTTTTGATTTGGCGATAAA+AGG + tig0028517:17382-17401 None:intergenic 30.0%
! AAGATAAAACTTTTGCGAAG+AGG + tig0028517:17442-17461 None:intergenic 30.0%
GTTAGAGGGGATATAAATAA+AGG + tig0028517:17514-17533 None:intergenic 30.0%
GTTATATTAGTCAGTTAGAG+GGG + tig0028517:17527-17546 None:intergenic 30.0%
CACTGTTAGAATAAATCAGT+AGG + tig0028517:17583-17602 None:intergenic 30.0%
!! CTACTGATTTATTCTAACAG+TGG - tig0028517:17581-17600 Msa1438170:intron 30.0%
TCCAGATTCAATCATAAAAC+TGG - tig0028517:17648-17667 Msa1438170:intron 30.0%
!! ACCAGTTTTATGATTGAATC+TGG + tig0028517:17652-17671 None:intergenic 30.0%
ATTCAATCATAAAACTGGTG+CGG - tig0028517:17653-17672 Msa1438170:intron 30.0%
!! TTTCTCAGTTTTATCCATAG+AGG + tig0028517:17772-17791 None:intergenic 30.0%
TCTATGGATAAAACTGAGAA+AGG - tig0028517:17771-17790 Msa1438170:intron 30.0%
ATGATAAAAGATGTTAGCAG+TGG - tig0028517:17858-17877 Msa1438170:intron 30.0%
GTATCAAATGGAAGAATAAG+AGG + tig0028517:18111-18130 None:intergenic 30.0%
CTTATTCTTCCATTTGATAC+AGG - tig0028517:18111-18130 Msa1438170:intron 30.0%
ATCAATGTTCACGATATCAT+AGG + tig0028517:18209-18228 None:intergenic 30.0%
! TGATATCGTGAACATTGATT+TGG - tig0028517:18210-18229 Msa1438170:intron 30.0%
! CTCGAAATATTCAGAGTTTT+CGG + tig0028517:18329-18348 None:intergenic 30.0%
AAAATAAGGAGTTCAATCTG+TGG + tig0028517:18370-18389 None:intergenic 30.0%
! CAAAGCATCACAAATTTCTT+TGG + tig0028517:18551-18570 None:intergenic 30.0%
! ATGATATTGAGGCATTAGAA+AGG - tig0028517:18623-18642 Msa1438170:CDS 30.0%
TAGAAAGCTGTATCATTCTT+CGG - tig0028517:18663-18682 Msa1438170:CDS 30.0%
!! TGATAAGGAAAAATGGGTTG+TGG + tig0028517:14788-14807 None:intergenic 35.0%
! TAACGGATATTCCTTCTTCT+GGG + tig0028517:14926-14945 None:intergenic 35.0%
! TTAACGGATATTCCTTCTTC+TGG + tig0028517:14927-14946 None:intergenic 35.0%
ATTGAAAATGCTTGTTTGGG+TGG - tig0028517:15038-15057 Msa1438170:CDS 35.0%
! CTGTTGCTATTATGTATGAG+AGG - tig0028517:15075-15094 Msa1438170:CDS 35.0%
! TGTTTGTTGATTGCGAGTAA+AGG - tig0028517:15310-15329 Msa1438170:CDS 35.0%
! GTTTGTTGATTGCGAGTAAA+GGG - tig0028517:15311-15330 Msa1438170:CDS 35.0%
GACATAAACATTTGTGAGAC+TGG - tig0028517:15367-15386 Msa1438170:CDS 35.0%
TTTAGAGAGCTTATGGAAAC+AGG - tig0028517:15390-15409 Msa1438170:CDS 35.0%
ATTCACATTTCAATGAACCC+CGG + tig0028517:15831-15850 None:intergenic 35.0%
ATTCACATTTCAATGAACCC+CGG + tig0028517:15831-15850 None:intergenic 35.0%
AAAAATTGGCAGAAGAGACA+AGG - tig0028517:16008-16027 Msa1438170:intron 35.0%
AGAACCTTCAAAGCTTAACT+CGG - tig0028517:16259-16278 Msa1438170:intron 35.0%
! AATTCCGAGTTAAGCTTTGA+AGG + tig0028517:16266-16285 None:intergenic 35.0%
AAGCTTAACTCGGAATTCTT+TGG - tig0028517:16269-16288 Msa1438170:intron 35.0%
TTCGAGATAGATGATTACCA+TGG - tig0028517:16338-16357 Msa1438170:intron 35.0%
! CCATTCAGAATCCTTTTCTT+CGG - tig0028517:16617-16636 Msa1438170:intron 35.0%
! ATTTGTTCTTTTGCAGTTGC+AGG + tig0028517:16839-16858 None:intergenic 35.0%
! ACCGGTGTATACTATTTTGT+TGG - tig0028517:16985-17004 Msa1438170:intron 35.0%
CTTGCAATTAGTTATCTTGG+TGG - tig0028517:17071-17090 Msa1438170:intron 35.0%
AAATCAGTAGGGCAGAATAA+GGG + tig0028517:17571-17590 None:intergenic 35.0%
TAAATCAGTAGGGCAGAATA+AGG + tig0028517:17572-17591 None:intergenic 35.0%
TTCGTTGTTAGAAGACAAAG+CGG + tig0028517:17694-17713 None:intergenic 35.0%
ACTAGCTCAAAATTCCTCTA+TGG - tig0028517:17755-17774 Msa1438170:intron 35.0%
! GGAGTATTCTTCAATTACTG+AGG - tig0028517:17809-17828 Msa1438170:intron 35.0%
! TGAAGTCCAATGGATTCGAA+TGG - tig0028517:14874-14893 Msa1438170:CDS 40.0%
GAGCAACACATTGCAATTTG+TGG - tig0028517:14896-14915 Msa1438170:CDS 40.0%
AACGGATATTCCTTCTTCTG+GGG + tig0028517:14925-14944 None:intergenic 40.0%
GCATTGTGTGAAATCAATGC+AGG - tig0028517:14948-14967 Msa1438170:CDS 40.0%
TGAAATCAATGCAGGTGATG+TGG - tig0028517:14956-14975 Msa1438170:CDS 40.0%
TGCTTGTTTGGGTGGTTATT+TGG - tig0028517:15046-15065 Msa1438170:CDS 40.0%
GCTTGTTTGGGTGGTTATTT+GGG - tig0028517:15047-15066 Msa1438170:CDS 40.0%
AAAGGCAAACATTCCTGTTG+AGG + tig0028517:15146-15165 None:intergenic 40.0%
TCAACAGGAATGTTTGCCTT+TGG - tig0028517:15145-15164 Msa1438170:CDS 40.0%
AGGAATGTTTGCCTTTGGTT+TGG - tig0028517:15150-15169 Msa1438170:CDS 40.0%
TCTTCAACACTCCAAACCAA+AGG + tig0028517:15164-15183 None:intergenic 40.0%
GAGTAAAGGGTTGTTTGTGT+TGG - tig0028517:15324-15343 Msa1438170:CDS 40.0%
!! AGACTGGTTTAGAGAGCTTA+TGG - tig0028517:15383-15402 Msa1438170:CDS 40.0%
TTCACATTTCAATGAACCCC+GGG + tig0028517:15830-15849 None:intergenic 40.0%
TTCACATTTCAATGAACCCC+GGG + tig0028517:15830-15849 None:intergenic 40.0%
! AAGCTTTTGTCTATGAGGAC+TGG - tig0028517:16207-16226 Msa1438170:intron 40.0%
AGAGAATATTCTACCCCTGT+TGG - tig0028517:16232-16251 Msa1438170:intron 40.0%
!! TGAAGGTTCTGAATCCAACA+GGG + tig0028517:16249-16268 None:intergenic 40.0%
!! TTGAAGGTTCTGAATCCAAC+AGG + tig0028517:16250-16269 None:intergenic 40.0%
TAACTCGGAATTCTTTGGTG+TGG - tig0028517:16274-16293 Msa1438170:intron 40.0%
!!! TGATTACCATGGTTTTGGCA+TGG - tig0028517:16349-16368 Msa1438170:intron 40.0%
AGAACCATAGTAATCACCAG+AGG + tig0028517:16401-16420 None:intergenic 40.0%
CCGAAGAAAAGGATTCTGAA+TGG + tig0028517:16620-16639 None:intergenic 40.0%
CTCTTACTTCTCCGAAGAAA+AGG + tig0028517:16631-16650 None:intergenic 40.0%
!!! TGACATTTTTTGGAGGTCCA+AGG - tig0028517:16873-16892 Msa1438170:intron 40.0%
CTGGAAAGCAATGTTGTATG+TGG - tig0028517:17189-17208 Msa1438170:CDS 40.0%
TTAGTACTACTCGGTCAGAT+TGG + tig0028517:17266-17285 None:intergenic 40.0%
TGAGAATAGAATTCTCCCCA+AGG - tig0028517:17412-17431 Msa1438170:intron 40.0%
GAGAATAGAATTCTCCCCAA+GGG - tig0028517:17413-17432 Msa1438170:intron 40.0%
TCTGGAGAAGACAGTGTTAT+AGG + tig0028517:17634-17653 None:intergenic 40.0%
GTCTTCTAACAACGAATCTG+AGG - tig0028517:17698-17717 Msa1438170:intron 40.0%
TGAGGATGATACTTCAATGC+TGG - tig0028517:17827-17846 Msa1438170:intron 40.0%
TGATACTTCAATGCTGGAGA+TGG - tig0028517:17833-17852 Msa1438170:intron 40.0%
AACACAGACACGTAGATGAA+AGG + tig0028517:17902-17921 None:intergenic 40.0%
AAGAGTAGAAGAGTGACTAC+TGG + tig0028517:18053-18072 None:intergenic 40.0%
! GCTGCTTTGCTACATAGATA+TGG - tig0028517:18163-18182 Msa1438170:intron 40.0%
!! CGTGAACATTGATTTGGAAC+TGG - tig0028517:18216-18235 Msa1438170:intron 40.0%
! ATTTGGAACTGGTACTTCAG+TGG - tig0028517:18227-18246 Msa1438170:intron 40.0%
ATAGCCTAACCTTCTCCAAA+GGG + tig0028517:18296-18315 None:intergenic 40.0%
AATAGCCTAACCTTCTCCAA+AGG + tig0028517:18297-18316 None:intergenic 40.0%
! TTGTGATGCTTTGTTGTCAC+TGG - tig0028517:18558-18577 Msa1438170:CDS 40.0%
AGTTGAAAAGGGCAACAAAG+AGG - tig0028517:18779-18798 Msa1438170:intron 40.0%
GTTGAAAAGGGCAACAAAGA+GGG - tig0028517:18780-18799 Msa1438170:intron 40.0%
GAGGTGTAAACATGCATACC+TGG + tig0028517:14753-14772 None:intergenic 45.0%
GTTTACGTGCATTCAAGCGA+TGG - tig0028517:14850-14869 Msa1438170:CDS 45.0%
AAGCGATGGATGAAGTCCAA+TGG - tig0028517:14864-14883 Msa1438170:CDS 45.0%
GTTGCTCCATTCGAATCCAT+TGG + tig0028517:14883-14902 None:intergenic 45.0%
! TCTTCAGCTTTTGCCTCAAC+AGG - tig0028517:15130-15149 Msa1438170:CDS 45.0%
!! GGTTTGGAGTGTTGAAGAAG+TGG - tig0028517:15166-15185 Msa1438170:CDS 45.0%
!! TGCTCTTCATTTGCTATGCC+CGG - tig0028517:15809-15828 Msa1438170:CDS 45.0%
!! TGCTCTTCATTTGCTATGCC+CGG - tig0028517:15809-15828 Msa1438170:CDS 45.0%
!! GAAGGTTCTGAATCCAACAG+GGG + tig0028517:16248-16267 None:intergenic 45.0%
TTCACTTACAGATCTGCCAG+GGG + tig0028517:16377-16396 None:intergenic 45.0%
CTTCACTTACAGATCTGCCA+GGG + tig0028517:16378-16397 None:intergenic 45.0%
AGATCTGTAAGTGAAGCCTC+TGG - tig0028517:16382-16401 Msa1438170:intron 45.0%
GAAGCCTCTGGTGATTACTA+TGG - tig0028517:16394-16413 Msa1438170:intron 45.0%
CTTGCAGCACATGGTTATCA+AGG + tig0028517:16816-16835 None:intergenic 45.0%
TTTGCGAAGAGGAAACCCTT+GGG + tig0028517:17431-17450 None:intergenic 45.0%
! TTTTGCGAAGAGGAAACCCT+TGG + tig0028517:17432-17451 None:intergenic 45.0%
!! GAAAGGCGTTGATAGCGAAA+TGG - tig0028517:17788-17807 Msa1438170:intron 45.0%
GACTGATCATCACTTTCCAG+TGG + tig0028517:17940-17959 None:intergenic 45.0%
ATACTCTTGATCTGCTGTGG+CGG + tig0028517:18273-18292 None:intergenic 45.0%
!! GCAGATCAAGAGTATCCCTT+TGG - tig0028517:18278-18297 Msa1438170:intron 45.0%
!! CAAGAGTATCCCTTTGGAGA+AGG - tig0028517:18284-18303 Msa1438170:intron 45.0%
! GTATCCCTTTGGAGAAGGTT+AGG - tig0028517:18289-18308 Msa1438170:intron 45.0%
!!! TTCAGAGTTTTCGGTGTCAC+TGG + tig0028517:18320-18339 None:intergenic 45.0%
! TGTTGTCACTGGCTGATATG+AGG - tig0028517:18569-18588 Msa1438170:CDS 45.0%
! GTTGTCACTGGCTGATATGA+GGG - tig0028517:18570-18589 Msa1438170:CDS 45.0%
GATATGAGGGAGAGTCTCTA+TGG - tig0028517:18583-18602 Msa1438170:CDS 45.0%
!! ATTACCAATCCTAGCTCTGC+CGG - tig0028517:18751-18770 Msa1438170:intron 45.0%
TGCCGGGAAGAAGTTGAAAA+GGG - tig0028517:18768-18787 Msa1438170:intron 45.0%
! TGCCCTTTTCAACTTCTTCC+CGG + tig0028517:18773-18792 None:intergenic 45.0%
!! AATAATAATAATAATAATTG+TGG - tig0028517:16732-16751 Msa1438170:intron 5.0%
GTTGTGGCGAAAATCGAGAG+AGG + tig0028517:14772-14791 None:intergenic 50.0%
TTTGTGGACACCCCAGAAGA+AGG - tig0028517:14912-14931 Msa1438170:CDS 50.0%
GTATGAGAGGAGTTTGGGTG+AGG - tig0028517:15088-15107 Msa1438170:CDS 50.0%
TTTGGGTGAGGAGTCTCCTT+GGG - tig0028517:15100-15119 Msa1438170:CDS 50.0%
AGCTGAAGATAACCCTCCCA+AGG + tig0028517:15119-15138 None:intergenic 50.0%
! GAAGTGGACCAGCTTTTGTG+TGG - tig0028517:15182-15201 Msa1438170:CDS 50.0%
GCTCAGTACCACACAAAAGC+TGG + tig0028517:15193-15212 None:intergenic 50.0%
! GTGTGGTACTGAGCTTCATC+AGG - tig0028517:15199-15218 Msa1438170:CDS 50.0%
!! GCTCTTCATTTGCTATGCCC+GGG - tig0028517:15810-15829 Msa1438170:CDS 50.0%
!! CTCTTCATTTGCTATGCCCG+GGG - tig0028517:15811-15830 Msa1438170:CDS 50.0%
!! GCTCTTCATTTGCTATGCCC+GGG - tig0028517:15810-15829 Msa1438170:CDS 50.0%
!! CTCTTCATTTGCTATGCCCG+GGG - tig0028517:15811-15830 Msa1438170:CDS 50.0%
GCTTCACTTACAGATCTGCC+AGG + tig0028517:16379-16398 None:intergenic 50.0%
TTGCGAAGAGGAAACCCTTG+GGG + tig0028517:17430-17449 None:intergenic 50.0%
AGATGTTAGCAGTGGAGCTG+AGG - tig0028517:17866-17885 Msa1438170:intron 50.0%
GGGATACTCTTGATCTGCTG+TGG + tig0028517:18276-18295 None:intergenic 50.0%
CGGTTCTGCGTATCAGTGAA+AGG - tig0028517:18683-18702 Msa1438170:CDS 50.0%
!! TTACCAATCCTAGCTCTGCC+GGG - tig0028517:18752-18771 Msa1438170:intron 50.0%
CTGCCGGGAAGAAGTTGAAA+AGG - tig0028517:18767-18786 Msa1438170:intron 50.0%
GTTTGGGTGAGGAGTCTCCT+TGG - tig0028517:15099-15118 Msa1438170:CDS 55.0%
GGGGAACCATGCCAAAACCA+TGG + tig0028517:16358-16377 None:intergenic 55.0%
!!! TGGTTTTGGCATGGTTCCCC+TGG - tig0028517:16358-16377 Msa1438170:intron 55.0%
AGTTGCAGGCTTGCAGCACA+TGG + tig0028517:16825-16844 None:intergenic 55.0%
TCTTGATCTGCTGTGGCGGT+TGG + tig0028517:18269-18288 None:intergenic 55.0%
AACTTCTTCCCGGCAGAGCT+AGG + tig0028517:18763-18782 None:intergenic 55.0%
GGTGAGGAGTCTCCTTGGGA+GGG - tig0028517:15104-15123 Msa1438170:CDS 60.0%
CTTCCCGGCAGAGCTAGGAT+TGG + tig0028517:18758-18777 None:intergenic 60.0%
GGGTGAGGAGTCTCCTTGGG+AGG - tig0028517:15103-15122 Msa1438170:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0028517 gene 14743 18810 14743 ID=Msa1438170;Name=Msa1438170
tig0028517 mRNA 14743 18810 14743 ID=Msa1438170-mRNA-1;Parent=Msa1438170;Name=Msa1438170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.25|0.2|0.8|1|1|5|0|497
tig0028517 exon 18800 18810 18800 ID=Msa1438170-mRNA-1:exon:11120;Parent=Msa1438170-mRNA-1
tig0028517 exon 18333 18705 18333 ID=Msa1438170-mRNA-1:exon:11119;Parent=Msa1438170-mRNA-1
tig0028517 exon 17166 17362 17166 ID=Msa1438170-mRNA-1:exon:11118;Parent=Msa1438170-mRNA-1
tig0028517 exon 15666 15900 15666 ID=Msa1438170-mRNA-1:exon:11117;Parent=Msa1438170-mRNA-1
tig0028517 exon 14743 15420 14743 ID=Msa1438170-mRNA-1:exon:11116;Parent=Msa1438170-mRNA-1
tig0028517 CDS 18800 18810 18800 ID=Msa1438170-mRNA-1:cds;Parent=Msa1438170-mRNA-1
tig0028517 CDS 18333 18705 18333 ID=Msa1438170-mRNA-1:cds;Parent=Msa1438170-mRNA-1
tig0028517 CDS 17166 17362 17166 ID=Msa1438170-mRNA-1:cds;Parent=Msa1438170-mRNA-1
tig0028517 CDS 15666 15900 15666 ID=Msa1438170-mRNA-1:cds;Parent=Msa1438170-mRNA-1
tig0028517 CDS 14743 15420 14743 ID=Msa1438170-mRNA-1:cds;Parent=Msa1438170-mRNA-1
Gene Sequence

>Msa1438170

ATGGCAACCAGACGTTTACGTGCATTCAAGCGATGGATGAAGTCCAATGGATTCGAATGGAGCAACACATTGCAATTTGTGGACACCCCAGAAGAAGGAATATCCGTTAAAGCATTGTGTGAAATCAATGCAGGTGATGTGGTTGCTAAAATGCCAAAGAAAGCTTGTCTTACAATCAAGACTAGTAGTGCTTGTGTGATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTTTAGCTGTTGCTATTATGTATGAGAGGAGTTTGGGTGAGGAGTCTCCTTGGGAGGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGAGTGTTGAAGAAGTGGACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGATAAAGCTTTTGTCTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACTCGGAATTCTTTGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTCGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACTGGTGCGGAAGATGTGCATTTCACCGCTTTGTCTTCTAACAACGAATCTGAGGATGACGCTGATGACGAAAGTGTTGATGAAGAAGCACTAGCTCAAAATTCCTCTATGGATAAAACTGAGAAAGGCGTTGATAGCGAAATGGAGTATTCTTCAATTACTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCTGAGGTATTTAATACTTACGGGATATTGGGTAATGCTGCTTTGCTACATAGATATGGATTTACTGAGCAAGATAACACCTATGATATCGTGAACATTGATTTGGAACTGGTACTTCAGTGGTGTTCTTCTTTGTTCTCCAACCGCCACAGCAGATCAAGAGTATCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACACCGAAAACTCTGAATATTTCGAGATATCATTTGATGGAGAACCACAGATTGAACTCCTTATTTTATTATACATCATCTTTTTACCGGATGATGTTTACAATAAATTAGATTTATCAGTAGCAGTTGCTGAGAATTGTCATGAATCAAGTGAAAAAACCACTTTTTTGAATGATGATATCTTTCTAAAGAAGCTGTCTAATATGAGCAAGAAAACTTTGATGACCAAAGAAATTTGTGATGCTTTGTTGTCACTGGCTGATATGAGGGAGAGTCTCTATGGTTTGAAATCAATAGAAGATGATATTGAGGCATTAGAAAGGTGTAGTTTTGTTAGAGATAGAAAGCTGTATCATTCTTCGGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACCAATCCTAGCTCTGCCGGGAAGAAGTTGAAAAGGGCAACAAAGAGGGAGAGTTGA

Protein sequence

>Msa1438170

MATRRLRAFKRWMKSNGFEWSNTLQFVDTPEEGISVKALCEINAGDVVAKMPKKACLTIKTSSACVIIENACLGGYLGLAVAIMYERSLGEESPWEGYLQLLPQQECLPLVWSVEEVDQLLCGTELHQTVQEDKAFVYEDWKENILPLLDSEPSKLNSEFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNNESEDDADDESVDEEALAQNSSMDKTEKGVDSEMEYSSITEDDTSMLEMVMIKDVSSGAEVFNTYGILGNAALLHRYGFTEQDNTYDIVNIDLELVLQWCSSLFSNRHSRSRVSLWRRLGYSSDTENSEYFEISFDGEPQIELLILLYIIFLPDDVYNKLDLSVAVAENCHESSEKTTFLNDDIFLKKLSNMSKKTLMTKEICDALLSLADMRESLYGLKSIEDDIEALERCSFVRDRKLYHSSVLRISERKILQKLRNYASKSCKITNPSSAGKKLKRATKRES*