AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079510 MtrunA17_Chr1g0190711 97.233 253 5 2 1 251 1 253 0.0 500
Msa0079510 MtrunA17_Chr1g0187921 64.876 242 67 5 15 251 8 236 3.41e-99 289
Msa0079510 MtrunA17_Chr1g0184791 65.432 243 64 6 17 251 15 245 6.06e-97 283
Msa0079510 MtrunA17_Chr7g0260641 60.729 247 80 5 15 251 11 250 3.77e-90 266
Msa0079510 MtrunA17_Chr5g0411501 47.569 288 97 9 15 251 51 335 7.58e-75 230
Msa0079510 MtrunA17_Chr8g0390281 48.029 279 92 7 15 250 24 292 1.94e-74 228
Msa0079510 MtrunA17_Chr6g0486121 50.190 263 80 8 15 250 15 253 2.18e-74 226
Msa0079510 MtrunA17_Chr8g0366881 46.853 286 99 7 15 251 67 348 4.76e-73 226
Msa0079510 MtrunA17_Chr5g0428141 47.719 285 97 7 15 250 65 346 2.43e-71 222
Msa0079510 MtrunA17_Chr2g0331411 45.277 307 95 9 13 250 23 325 4.91e-71 220
Msa0079510 MtrunA17_Chr7g0260621 46.753 231 81 7 14 240 10 202 1.59e-56 179
Msa0079510 MtrunA17_Chr1g0184801 46.725 229 81 5 15 240 12 202 1.12e-54 174
Msa0079510 MtrunA17_Chr1g0166011 43.363 226 85 5 15 240 1 183 1.83e-52 168
Msa0079510 MtrunA17_Chr1g0187961 45.333 225 66 7 15 239 11 178 2.86e-52 167
Msa0079510 MtrunA17_Chr1g0183251 43.716 183 71 4 96 246 81 263 7.25e-37 131
Msa0079510 MtrunA17_Chr4g0004181 41.991 231 68 9 15 243 6 172 2.81e-36 126
Msa0079510 MtrunA17_Chr2g0332141 58.252 103 33 3 135 234 8 103 1.89e-34 120
Msa0079510 MtrunA17_Chr2g0330951 36.948 249 127 10 21 242 18 263 2.75e-33 121
Msa0079510 MtrunA17_Chr8g0340731 35.366 246 127 9 21 235 16 260 1.85e-31 117
Msa0079510 MtrunA17_Chr4g0069561 35.915 142 59 5 95 233 69 181 4.63e-18 79.3
Msa0079510 MtrunA17_Chr3g0137601 29.787 141 80 4 97 236 88 210 5.64e-18 79.7
Msa0079510 MtrunA17_Chr1g0193861 39.796 98 47 3 135 232 85 170 2.19e-15 72.0
Msa0079510 MtrunA17_Chr4g0064131 27.815 151 86 3 82 232 78 205 3.09e-15 72.4
Msa0079510 MtrunA17_Chr7g0270851 38.095 105 45 3 132 232 67 155 3.18e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079510 AT3G04730.1 66.000 250 59 6 14 251 1 236 5.76e-103 299
Msa0079510 AT4G14550.1 64.706 238 73 4 15 251 1 228 8.33e-99 288
Msa0079510 AT3G23050.1 62.195 246 78 6 14 251 5 243 1.83e-97 285
Msa0079510 AT4G14550.2 63.436 227 72 4 15 240 1 217 8.34e-91 268
Msa0079510 AT1G04250.1 57.741 239 83 6 15 251 7 229 6.94e-88 260
Msa0079510 AT4G29080.1 51.799 278 93 9 9 250 32 304 1.24e-78 239
Msa0079510 AT4G14550.3 60.976 205 69 4 15 218 1 195 8.14e-76 228
Msa0079510 AT3G23050.2 58.216 213 75 5 14 219 5 210 8.60e-75 226
Msa0079510 AT5G65670.2 48.264 288 101 9 7 251 54 336 1.07e-68 215
Msa0079510 AT2G22670.3 45.161 279 103 6 15 250 47 318 2.08e-67 211
Msa0079510 AT2G22670.1 45.161 279 103 6 15 250 47 318 2.08e-67 211
Msa0079510 AT2G22670.4 45.161 279 103 6 15 250 64 335 2.45e-67 212
Msa0079510 AT5G65670.1 47.931 290 101 10 7 251 54 338 1.16e-66 210
Msa0079510 AT2G22670.5 44.444 279 103 7 15 250 47 316 3.33e-64 203
Msa0079510 AT2G22670.2 44.444 279 103 7 15 250 47 316 3.33e-64 203
Msa0079510 AT1G04240.1 47.577 227 75 7 14 240 4 186 5.84e-61 190
Msa0079510 AT1G04240.2 47.577 227 75 7 14 240 104 286 1.27e-59 190
Msa0079510 AT5G43700.1 48.899 227 62 8 14 240 10 182 4.45e-58 183
Msa0079510 AT4G14550.4 57.500 160 57 4 15 173 1 150 1.47e-47 156
Msa0079510 AT3G23030.1 42.308 234 64 6 10 239 4 170 7.17e-46 151
Msa0079510 AT3G23050.3 53.293 167 64 5 14 173 5 164 2.34e-45 150
Msa0079510 AT3G23030.2 42.308 234 64 6 10 239 91 257 5.17e-45 152
Msa0079510 AT3G15540.1 42.739 241 80 10 15 246 6 197 8.63e-44 147
Msa0079510 AT4G14560.1 40.541 222 68 6 15 236 7 164 8.48e-43 143
Msa0079510 AT2G33310.2 43.684 190 85 6 73 245 53 237 4.22e-39 136
Msa0079510 AT1G15580.1 40.724 221 61 7 15 234 8 159 1.50e-38 132
Msa0079510 AT2G33310.3 43.158 190 85 6 73 245 53 236 1.01e-37 132
Msa0079510 AT2G33310.1 43.158 190 85 6 73 245 53 236 1.01e-37 132
Msa0079510 AT1G04550.2 40.404 198 80 6 73 246 47 230 1.04e-36 130
Msa0079510 AT1G52830.1 38.938 226 92 8 15 240 6 185 9.52e-36 126
Msa0079510 AT3G16500.2 36.327 245 121 8 8 235 26 252 1.44e-34 125
Msa0079510 AT3G16500.1 35.510 245 123 7 8 235 26 252 1.51e-34 125
Msa0079510 AT4G28640.1 45.283 159 70 5 96 240 87 242 6.19e-33 120
Msa0079510 AT4G28640.3 45.223 157 69 5 96 238 87 240 1.18e-32 119
Msa0079510 AT4G28640.2 45.513 156 68 5 97 238 88 240 9.79e-32 119
Msa0079510 AT1G51950.1 35.317 252 106 9 10 235 30 250 1.75e-30 114
Msa0079510 AT5G25890.1 36.842 190 93 5 54 242 7 170 1.27e-27 104
Msa0079510 AT1G04100.1 36.437 247 123 8 24 239 16 259 9.01e-27 104
Msa0079510 AT3G17600.1 34.722 144 67 4 89 232 38 154 4.46e-22 89.7
Msa0079510 AT2G46990.1 39.583 96 45 1 135 230 86 168 1.06e-16 75.9
Msa0079510 AT3G62100.1 38.776 98 47 1 135 232 84 168 1.45e-16 75.5
Msa0079510 AT4G32280.1 27.684 177 81 4 85 232 82 240 6.43e-16 75.5
Msa0079510 AT4G32280.2 35.714 98 45 2 135 232 119 198 9.85e-16 73.9
Msa0079510 AT1G80390.1 33.553 152 55 4 20 171 19 124 3.74e-13 65.1
Msa0079510 AT2G46990.2 38.824 85 39 1 135 219 86 157 5.62e-12 62.8
Msa0079510 AT3G62100.2 37.647 85 40 1 135 219 84 155 1.71e-11 61.2

Find 126 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAACTCTTGTACAATTTA+AGG 0.136546 1_2:+57409613 None:intergenic
AGATTTGATCAACTAGATTT+TGG 0.213012 1_2:+57412392 None:intergenic
TGGCTTTGGATGTTCATATA+TGG 0.227683 1_2:+57412412 None:intergenic
GCAAGATCCTTTGTAGTATT+AGG 0.256993 1_2:-57408516 Msa0079510:intron
TATATTTGGTGAAGGGGTTA+TGG 0.280748 1_2:+57412110 None:intergenic
GATGAAGCAGAATCATTTAT+AGG 0.292641 1_2:+57411776 None:intergenic
CTCGAGCCAACTTGCTTCCT+TGG 0.317287 1_2:+57408926 None:intergenic
AAATTAGGTGGAAATTCATT+AGG 0.319576 1_2:-57408786 Msa0079510:three_prime_UTR
ATGTTTCCAGTTATCATTGC+TGG 0.325654 1_2:-57408653 Msa0079510:three_prime_UTR
ATACCATGTGCTTGTTGTTA+CGG 0.346756 1_2:-57408170 Msa0079510:three_prime_UTR
TCATAAAGTCCTTGGTAACT+TGG 0.357262 1_2:+57409529 None:intergenic
TGCTTGTTGGTGATGTTCCT+TGG 0.360170 1_2:-57409431 Msa0079510:CDS
ATATTTGGTGAAGGGGTTAT+GGG 0.360734 1_2:+57412111 None:intergenic
GGCTTTGGATGTTCATATAT+GGG 0.373682 1_2:+57412413 None:intergenic
TTCTTTCTAAAGGATCTAAC+TGG 0.382249 1_2:+57409756 None:intergenic
GAGTTACGACTCGGTCTTCC+AGG 0.382644 1_2:-57411893 Msa0079510:CDS
TTATATATGAATGAGAAATT+AGG 0.392785 1_2:-57408801 Msa0079510:three_prime_UTR
ATTTACTATGTTCTTTCTAA+AGG 0.395708 1_2:+57409746 None:intergenic
TCGAGCCAACTTGCTTCCTT+GGG 0.403910 1_2:+57408927 None:intergenic
AAGGAAAAGGCAGGCAAGTA+GGG 0.404980 1_2:-57412279 Msa0079510:five_prime_UTR
ACAAATCCAGCAATGATAAC+TGG 0.406835 1_2:+57408647 None:intergenic
TTTGGTGATATATTTGGTGA+AGG 0.407964 1_2:+57412102 None:intergenic
AATCACAAAATAAGAATAAG+AGG 0.408703 1_2:+57408108 None:intergenic
TTGGTGATATATTTGGTGAA+GGG 0.409957 1_2:+57412103 None:intergenic
AGGTCCACCTTACGTAGATA+TGG 0.411796 1_2:+57409633 None:intergenic
CTTGTCTGTCAAGTTGTAAA+TGG 0.415347 1_2:-57408245 Msa0079510:three_prime_UTR
ATGAAAGGTTCCGAGGCAAT+TGG 0.416704 1_2:-57409151 Msa0079510:CDS
CCTTCACAATTGACAATTGT+GGG 0.417767 1_2:-57409554 Msa0079510:CDS
GCTTGTTGGTGATGTTCCTT+GGG 0.420684 1_2:-57409430 Msa0079510:CDS
CAATAAATATGATACGTATA+AGG 0.420782 1_2:+57408568 None:intergenic
GGATTATAAGGGGATTTGTC+GGG 0.422567 1_2:+57412182 None:intergenic
AAGAGAAAATGACTAACGTT+GGG 0.423757 1_2:-57411961 Msa0079510:exon
AAAGGCAGGCAAGTAGGGGC+AGG 0.426754 1_2:-57412274 Msa0079510:five_prime_UTR
TGGATTATAAGGGGATTTGT+CGG 0.427263 1_2:+57412181 None:intergenic
GTGCGTTTAGAAGATGGTTT+TGG 0.427911 1_2:+57412084 None:intergenic
GTATGGGTCCACCATGTTCA+TGG 0.428942 1_2:+57408189 None:intergenic
CACCATGTTCATGGATCTAA+AGG 0.433435 1_2:+57408198 None:intergenic
GCTTTCATTCATAAAGTCCT+TGG 0.434299 1_2:+57409521 None:intergenic
AATTAGGTGGAAATTCATTA+GGG 0.434858 1_2:-57408785 Msa0079510:three_prime_UTR
AGTAAGGTCGAGGCTAATAT+AGG 0.437617 1_2:-57408905 Msa0079510:three_prime_UTR
TTGTAGTGGACATACTAGTT+TGG 0.446414 1_2:+57412250 None:intergenic
CTTCCAGGTGCAGGTGATCA+TGG 0.446630 1_2:-57411878 Msa0079510:CDS
TTATTTGTGCGTTTAGAAGA+TGG 0.452639 1_2:+57412078 None:intergenic
CTTGTTGTTACGGCCCTCAA+TGG 0.460729 1_2:-57408160 Msa0079510:three_prime_UTR
AGCACAAGTGGTGGTGGGAA+TGG 0.463834 1_2:-57409687 Msa0079510:CDS
TGGAGATGTTGACACGTGTA+TGG 0.465271 1_2:+57412147 None:intergenic
AAAGGAAAAGGCAGGCAAGT+AGG 0.470110 1_2:-57412280 Msa0079510:five_prime_UTR
CCAGCGCATCTGACAGCTCT+TGG 0.472063 1_2:+57409592 None:intergenic
TGAAAGGTTCCGAGGCAATT+GGG 0.476415 1_2:-57409150 Msa0079510:CDS
AATTTGTAGGGCACAAGTTG+TGG 0.477874 1_2:-57409787 Msa0079510:intron
CATAATCAGAACCGTTCAAA+AGG 0.478352 1_2:+57409487 None:intergenic
CCATCTTTGTCTTCATATGT+TGG 0.478384 1_2:+57409462 None:intergenic
CCAAGAGCTGTCAGATGCGC+TGG 0.479602 1_2:-57409592 Msa0079510:CDS
GATAAGAGCACAAGTGGTGG+TGG 0.485348 1_2:-57409693 Msa0079510:CDS
GAAGCAAGTTGGCTCGAGTA+AGG 0.490808 1_2:-57408921 Msa0079510:three_prime_UTR
TCCTTCACAATTGACAATTG+TGG 0.492530 1_2:-57409555 Msa0079510:CDS
ATGAAGACAAAGATGGTGAT+TGG 0.495668 1_2:-57409455 Msa0079510:CDS
TCATTCCCACCAAATAAGAT+TGG 0.505558 1_2:-57412333 Msa0079510:five_prime_UTR
TTTAGACCAATCTTATTTGG+TGG 0.506070 1_2:+57412327 None:intergenic
TTTGTTAAGGTGAGCATGGA+TGG 0.512238 1_2:-57409660 Msa0079510:CDS
TGTTAATAGGTGGGTAGCAA+AGG 0.513891 1_2:-57412298 Msa0079510:five_prime_UTR
ATTTGGTGAAGGGGTTATGG+GGG 0.518976 1_2:+57412113 None:intergenic
GTTGTTACGGCCCTCAATGG+AGG 0.518996 1_2:-57408157 Msa0079510:three_prime_UTR
TGTCAACATCTCCATCCATA+TGG 0.521501 1_2:-57412138 Msa0079510:five_prime_UTR
TTAGACCAATCTTATTTGGT+GGG 0.521671 1_2:+57412328 None:intergenic
GATGGTGATTGGATGCTTGT+TGG 0.521825 1_2:-57409444 Msa0079510:CDS
GGTTCCGAGGCAATTGGGCT+AGG 0.522558 1_2:-57409145 Msa0079510:intron
GTAACAACAAGCACATGGTA+TGG 0.524061 1_2:+57408172 None:intergenic
GTAGTGGATCCCTCCATTGA+GGG 0.524101 1_2:+57408147 None:intergenic
TGGTGATATATTTGGTGAAG+GGG 0.529685 1_2:+57412104 None:intergenic
CATAAAGTCCTTGGTAACTT+GGG 0.531177 1_2:+57409530 None:intergenic
TCTCCATGATCACCTGCACC+TGG 0.535477 1_2:+57411875 None:intergenic
TTTACCTAGCCCAATTGCCT+CGG 0.542690 1_2:+57409141 None:intergenic
GCAGATTTATCAACCAGAAG+TGG 0.545785 1_2:+57408952 None:intergenic
TTGTTACGGCCCTCAATGGA+GGG 0.545964 1_2:-57408156 Msa0079510:three_prime_UTR
TGGAAGACCGAGTCGTAACT+CGG 0.546250 1_2:+57411895 None:intergenic
TGGGAATGGAGCATTTGTTA+AGG 0.549372 1_2:-57409673 Msa0079510:CDS
ATTTGTAGGGCACAAGTTGT+GGG 0.551340 1_2:-57409786 Msa0079510:intron
AATTACAGCACCAAGGGCAG+TGG 0.556761 1_2:-57409024 Msa0079510:intron
CGACTCGGTCTTCCAGGTGC+AGG 0.557067 1_2:-57411887 Msa0079510:CDS
ACTAACTTAGCACGAGGAGG+AGG 0.558406 1_2:+57411686 None:intergenic
TATATGAATGAGAAATTAGG+TGG 0.560071 1_2:-57408798 Msa0079510:three_prime_UTR
AAAGAGAAAATGACTAACGT+TGG 0.560324 1_2:-57411962 Msa0079510:exon
GGGGATTTGTCGGGAAAATG+AGG 0.562737 1_2:+57412191 None:intergenic
TGGGTAGCAAAGGAAAAGGC+AGG 0.562954 1_2:-57412288 Msa0079510:five_prime_UTR
TTGTCGGGAAAATGAGGTCA+TGG 0.565268 1_2:+57412197 None:intergenic
TGTAATAATAAGAATGATTG+TGG 0.565492 1_2:+57412224 None:intergenic
TTTGATGGTTGGATTATAAG+GGG 0.568755 1_2:+57412172 None:intergenic
AGTAGTGGATCCCTCCATTG+AGG 0.570074 1_2:+57408146 None:intergenic
GAAGCAGATAAGAGCACAAG+TGG 0.581742 1_2:-57409699 Msa0079510:CDS
TAACAACAAGCACATGGTAT+GGG 0.581887 1_2:+57408173 None:intergenic
TAGGTGGGTAGCAAAGGAAA+AGG 0.584025 1_2:-57412292 Msa0079510:five_prime_UTR
ATTGTTAATTACAGCACCAA+GGG 0.584897 1_2:-57409030 Msa0079510:intron
TAAATGGAGCTGATTTGTTG+AGG 0.589212 1_2:-57408229 Msa0079510:three_prime_UTR
CCAACATATGAAGACAAAGA+TGG 0.591098 1_2:-57409462 Msa0079510:CDS
GGAGATGTTGACACGTGTAT+GGG 0.591297 1_2:+57412148 None:intergenic
AGGAAAAGGCAGGCAAGTAG+GGG 0.592809 1_2:-57412278 Msa0079510:five_prime_UTR
AAATATGATACGTATAAGGT+AGG 0.598381 1_2:+57408572 None:intergenic
GTAGGGCACAAGTTGTGGGA+TGG 0.599917 1_2:-57409782 Msa0079510:intron
TGCATCCCAAGGAAGCAAGT+TGG 0.600502 1_2:-57408932 Msa0079510:three_prime_UTR
TATTTGGTGAAGGGGTTATG+GGG 0.602160 1_2:+57412112 None:intergenic
AGCATTTGTTAAGGTGAGCA+TGG 0.602441 1_2:-57409664 Msa0079510:CDS
CCCACAATTGTCAATTGTGA+AGG 0.603780 1_2:+57409554 None:intergenic
AGTTGGCTCGAGTAAGGTCG+AGG 0.607074 1_2:-57408915 Msa0079510:three_prime_UTR
GCCTCTGTAGCTGAAAACAA+AGG 0.612061 1_2:-57411740 Msa0079510:CDS
TGGCGCACCATATCTACGTA+AGG 0.613344 1_2:-57409640 Msa0079510:CDS
GAACATATGAAATAAAGTAG+TGG 0.616500 1_2:+57408131 None:intergenic
TTTCTAAAGGATCTAACTGG+TGG 0.617257 1_2:+57409759 None:intergenic
CGCACCATATCTACGTAAGG+TGG 0.620279 1_2:-57409637 Msa0079510:CDS
GCAGATAAGAGCACAAGTGG+TGG 0.620410 1_2:-57409696 Msa0079510:CDS
AAGCGTCTTCGCATAATGAA+AGG 0.624465 1_2:-57409166 Msa0079510:CDS
ATCACAAAATAAGAATAAGA+GGG 0.625000 1_2:+57408109 None:intergenic
AAAAGGGCTACTCACTCCCA+AGG 0.626117 1_2:+57409414 None:intergenic
ATAAGAGCACAAGTGGTGGT+GGG 0.631680 1_2:-57409692 Msa0079510:CDS
GTTGATAAATCTGCATCCCA+AGG 0.636946 1_2:-57408943 Msa0079510:three_prime_UTR
GAGGAGACCGAGTTACGACT+CGG 0.639589 1_2:-57411902 Msa0079510:CDS
ATTATAAGTCAAGCACACGC+TGG 0.650658 1_2:+57408683 None:intergenic
TATTGTTAATTACAGCACCA+AGG 0.651227 1_2:-57409031 Msa0079510:intron
GGGAGTACCTAATACTACAA+AGG 0.652519 1_2:+57408509 None:intergenic
AGAGAAAATGACTAACGTTG+GGG 0.657706 1_2:-57411960 Msa0079510:exon
TTGTGGGTCCCAAGTTACCA+AGG 0.660834 1_2:-57409538 Msa0079510:CDS
TCGCATAATGAAAGGTTCCG+AGG 0.668062 1_2:-57409158 Msa0079510:CDS
TGCCTTTAGATCCATGAACA+TGG 0.675466 1_2:-57408200 Msa0079510:three_prime_UTR
AAAACTAACTTAGCACGAGG+AGG 0.685271 1_2:+57411683 None:intergenic
GGGCCGTAACAACAAGCACA+TGG 0.689647 1_2:+57408167 None:intergenic
CTTTAGATCCATGAACATGG+TGG 0.719280 1_2:-57408197 Msa0079510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAATAAGTTTTAATT+AGG - chr1_2:57409199-57409218 Msa0079510:intron 10.0%
!!! CTTATAAAAATGTTTTAATT+AGG - chr1_2:57409225-57409244 Msa0079510:intron 10.0%
!!! AATTTTATTCAAAAAATTTG+AGG + chr1_2:57409870-57409889 None:intergenic 10.0%
!!! AATTTTTAAAAGAATAAACA+TGG - chr1_2:57410023-57410042 Msa0079510:intron 10.0%
!!! AATAATAGTATTATTTTAGT+TGG - chr1_2:57410190-57410209 Msa0079510:intron 10.0%
!! ATGTACAAAATAAAAATAAT+GGG + chr1_2:57411892-57411911 None:intergenic 10.0%
!! AATGTACAAAATAAAAATAA+TGG + chr1_2:57411893-57411912 None:intergenic 10.0%
!!! TCTTTTTCTTTTTCTTTTTT+TGG + chr1_2:57408498-57408517 None:intergenic 15.0%
!! TGAATAATTAAGTTATATCT+AGG - chr1_2:57408967-57408986 Msa0079510:three_prime_UTR 15.0%
!! ATATTATTGTTTAACAAAAC+AGG + chr1_2:57409622-57409641 None:intergenic 15.0%
!!! AAGTTTAATGTTAGTTTTTA+TGG + chr1_2:57409679-57409698 None:intergenic 15.0%
!! ATTAAAATTCATGTCAAAAT+AGG + chr1_2:57409896-57409915 None:intergenic 15.0%
!!! TGTAATAAAATTGATTTTGA+AGG + chr1_2:57409964-57409983 None:intergenic 15.0%
!!! AAAAAAAATAAAGTATTGGA+TGG - chr1_2:57410142-57410161 Msa0079510:intron 15.0%
!! AATTAACAATATTATATGAG+TGG + chr1_2:57410299-57410318 None:intergenic 15.0%
!! TTAATGAATATTGAATTTGT+AGG - chr1_2:57410710-57410729 Msa0079510:intron 15.0%
!! TAATGAATATTGAATTTGTA+GGG - chr1_2:57410711-57410730 Msa0079510:intron 15.0%
!!! AAATTAGGTTTAAAACATTA+TGG - chr1_2:57411433-57411452 Msa0079510:intron 15.0%
!! TTATATATGAATGAGAAATT+AGG - chr1_2:57411709-57411728 Msa0079510:CDS 15.0%
!! TGTACAAAATAAAAATAATG+GGG + chr1_2:57411891-57411910 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr1_2:57412067-57412086 Msa0079510:five_prime_UTR 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr1_2:57412068-57412087 Msa0079510:five_prime_UTR 15.0%
!! TATTTAGTGATATATTGTAT+TGG - chr1_2:57412132-57412151 Msa0079510:five_prime_UTR 15.0%
!! ATTTAGTGATATATTGTATT+GGG - chr1_2:57412133-57412152 Msa0079510:five_prime_UTR 15.0%
!! GTCTAAAAAGAATTGTTAAT+AGG - chr1_2:57408199-57408218 Msa0079510:three_prime_UTR 20.0%
!! TAAAAAGAATTGTTAATAGG+TGG - chr1_2:57408202-57408221 Msa0079510:three_prime_UTR 20.0%
!! AAAAAGAATTGTTAATAGGT+GGG - chr1_2:57408203-57408222 Msa0079510:three_prime_UTR 20.0%
!! TGTAATAATAAGAATGATTG+TGG + chr1_2:57408289-57408308 None:intergenic 20.0%
!! TCATAGAGTATAGATAATTA+AGG - chr1_2:57409094-57409113 Msa0079510:intron 20.0%
!!! AATGTTTTAATTAGGTTAGA+AGG - chr1_2:57409233-57409252 Msa0079510:intron 20.0%
!!! TTTTTTGAACATGACAATTT+TGG - chr1_2:57409343-57409362 Msa0079510:intron 20.0%
!! ATTTGTTTGTGAAAAACTAT+TGG - chr1_2:57409399-57409418 Msa0079510:intron 20.0%
!!! TTTATTTATCCTTTTGTTTG+GGG + chr1_2:57410323-57410342 None:intergenic 20.0%
!!! CTTTATTTATCCTTTTGTTT+GGG + chr1_2:57410324-57410343 None:intergenic 20.0%
!!! ACTTTATTTATCCTTTTGTT+TGG + chr1_2:57410325-57410344 None:intergenic 20.0%
!! AAGGATAAATAAAGTTGAAA+AGG - chr1_2:57410330-57410349 Msa0079510:intron 20.0%
!! GTAATTTATGCATGAATTAT+TGG + chr1_2:57410417-57410436 None:intergenic 20.0%
!! CATAAATTACTGTAGTATAA+AGG - chr1_2:57410427-57410446 Msa0079510:intron 20.0%
!! ATTTGTGTTTAATTGGAAAT+TGG - chr1_2:57410458-57410477 Msa0079510:intron 20.0%
!! ATCTGTTTAATAAGATTAGT+TGG - chr1_2:57410662-57410681 Msa0079510:intron 20.0%
!! ATTTACTATGTTCTTTCTAA+AGG + chr1_2:57410767-57410786 None:intergenic 20.0%
!! AATTAAAACAATGAAATGTG+AGG + chr1_2:57411127-57411146 None:intergenic 20.0%
!!! AAATTTTTATTGGTTTGAGT+TGG + chr1_2:57411197-57411216 None:intergenic 20.0%
!! ATAGTCATACTCTTATTAAT+TGG - chr1_2:57411277-57411296 Msa0079510:intron 20.0%
!! TCAAATGCATTTAACAAATT+AGG - chr1_2:57411418-57411437 Msa0079510:intron 20.0%
!!! TACAAAATAAAAATAATGGG+GGG + chr1_2:57411889-57411908 None:intergenic 20.0%
!! GTACAAAATAAAAATAATGG+GGG + chr1_2:57411890-57411909 None:intergenic 20.0%
!! CAATAAATATGATACGTATA+AGG + chr1_2:57411945-57411964 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr1_2:57412069-57412088 Msa0079510:five_prime_UTR 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr1_2:57412092-57412111 Msa0079510:five_prime_UTR 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr1_2:57412165-57412184 Msa0079510:five_prime_UTR 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr1_2:57412166-57412185 Msa0079510:five_prime_UTR 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr1_2:57412202-57412221 Msa0079510:five_prime_UTR 20.0%
!! ATCACAAAATAAGAATAAGA+GGG + chr1_2:57412404-57412423 None:intergenic 20.0%
!! AATCACAAAATAAGAATAAG+AGG + chr1_2:57412405-57412424 None:intergenic 20.0%
!! AGATTTGATCAACTAGATTT+TGG + chr1_2:57408121-57408140 None:intergenic 25.0%
!! CTTTTTAGACCAATCTTATT+TGG + chr1_2:57408189-57408208 None:intergenic 25.0%
!!! TTTTGATGGTTGGATTATAA+GGG + chr1_2:57408342-57408361 None:intergenic 25.0%
! TTATCTATACTCTATGAACA+AGG + chr1_2:57409091-57409110 None:intergenic 25.0%
!! GTTTCTTGTTCCATAATTTT+TGG - chr1_2:57409291-57409310 Msa0079510:intron 25.0%
!! ATAATCTGGATGACATTTTT+AGG + chr1_2:57410095-57410114 None:intergenic 25.0%
!! AATTTTTCTTGCACATAATC+TGG + chr1_2:57410109-57410128 None:intergenic 25.0%
!!! AAAAATAAAGTATTGGATGG+TGG - chr1_2:57410145-57410164 Msa0079510:intron 25.0%
!!! TTTTAGTTGGATTTTTTCTG+CGG - chr1_2:57410203-57410222 Msa0079510:intron 25.0%
!!! TTATTTATCCTTTTGTTTGG+GGG + chr1_2:57410322-57410341 None:intergenic 25.0%
! AGACTATATAACAATGTGAT+AGG + chr1_2:57410390-57410409 None:intergenic 25.0%
! TGAACATCAATGATCTTAAT+CGG + chr1_2:57410538-57410557 None:intergenic 25.0%
!! AAATTGATTGACCTTTTGAA+CGG - chr1_2:57411012-57411031 Msa0079510:intron 25.0%
!! ACGACGTAACAAATTTTTAT+TGG + chr1_2:57411207-57411226 None:intergenic 25.0%
! ATGATCAAAATGTTATGAGT+CGG + chr1_2:57411259-57411278 None:intergenic 25.0%
! TATATGAATGAGAAATTAGG+TGG - chr1_2:57411712-57411731 Msa0079510:CDS 25.0%
! AAATTAGGTGGAAATTCATT+AGG - chr1_2:57411724-57411743 Msa0079510:CDS 25.0%
! AATTAGGTGGAAATTCATTA+GGG - chr1_2:57411725-57411744 Msa0079510:CDS 25.0%
!!! ACCCAGTTTTTGTTTTATAA+GGG - chr1_2:57411778-57411797 Msa0079510:CDS 25.0%
! AAATATGATACGTATAAGGT+AGG + chr1_2:57411941-57411960 None:intergenic 25.0%
! CAAAGTAGGTCAATTAAATT+GGG + chr1_2:57412032-57412051 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr1_2:57412091-57412110 Msa0079510:five_prime_UTR 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr1_2:57412201-57412220 Msa0079510:five_prime_UTR 25.0%
! GAACATATGAAATAAAGTAG+TGG + chr1_2:57412382-57412401 None:intergenic 25.0%
! TTAGACCAATCTTATTTGGT+GGG + chr1_2:57408185-57408204 None:intergenic 30.0%
! TTTAGACCAATCTTATTTGG+TGG + chr1_2:57408186-57408205 None:intergenic 30.0%
! AATGATTGTGGTTTTTGTAG+TGG + chr1_2:57408277-57408296 None:intergenic 30.0%
! TTTGATGGTTGGATTATAAG+GGG + chr1_2:57408341-57408360 None:intergenic 30.0%
!! GTTTTGATGGTTGGATTATA+AGG + chr1_2:57408343-57408362 None:intergenic 30.0%
! TTGGTGATATATTTGGTGAA+GGG + chr1_2:57408410-57408429 None:intergenic 30.0%
! TTTGGTGATATATTTGGTGA+AGG + chr1_2:57408411-57408430 None:intergenic 30.0%
!!! GATGGTTTTGGTGATATATT+TGG + chr1_2:57408417-57408436 None:intergenic 30.0%
TTATTTGTGCGTTTAGAAGA+TGG + chr1_2:57408435-57408454 None:intergenic 30.0%
AAAGAGAAAATGACTAACGT+TGG - chr1_2:57408548-57408567 Msa0079510:three_prime_UTR 30.0%
AAGAGAAAATGACTAACGTT+GGG - chr1_2:57408549-57408568 Msa0079510:three_prime_UTR 30.0%
! GTACAGCTTGATAAATTTTG+AGG - chr1_2:57408589-57408608 Msa0079510:three_prime_UTR 30.0%
TCACCTGTTAAAAATAGTTG+CGG - chr1_2:57408659-57408678 Msa0079510:three_prime_UTR 30.0%
!!! TTTCCGCAACTATTTTTAAC+AGG + chr1_2:57408665-57408684 None:intergenic 30.0%
GATGAAGCAGAATCATTTAT+AGG + chr1_2:57408737-57408756 None:intergenic 30.0%
GTTTGTGATTAAAGATCACA+CGG - chr1_2:57409258-57409277 Msa0079510:intron 30.0%
GCAAATTCTGCCAAAAATTA+TGG + chr1_2:57409304-57409323 None:intergenic 30.0%
! TTTGAACATGACAATTTTGG+TGG - chr1_2:57409346-57409365 Msa0079510:intron 30.0%
! ATTGGCAATTTGAGTTTGAT+TGG - chr1_2:57409417-57409436 Msa0079510:intron 30.0%
AAAGAAAAAGACAAGACACT+TGG - chr1_2:57410253-57410272 Msa0079510:intron 30.0%
CCAATTAAACACAAATTCTC+TGG + chr1_2:57410454-57410473 None:intergenic 30.0%
CCAGAGAATTTGTGTTTAAT+TGG - chr1_2:57410451-57410470 Msa0079510:intron 30.0%
! TTCTTTCTAAAGGATCTAAC+TGG + chr1_2:57410757-57410776 None:intergenic 30.0%
GGTAACTCTTGTACAATTTA+AGG + chr1_2:57410900-57410919 None:intergenic 30.0%
GAAATGTGAGGTGAAAAAAA+GGG + chr1_2:57411115-57411134 None:intergenic 30.0%
TGAAATGTGAGGTGAAAAAA+AGG + chr1_2:57411116-57411135 None:intergenic 30.0%
!! TTTATTGGTTTGAGTTGGTT+CGG + chr1_2:57411192-57411211 None:intergenic 30.0%
TGATCAAAATGTTATGAGTC+GGG + chr1_2:57411258-57411277 None:intergenic 30.0%
TATTGTTAATTACAGCACCA+AGG - chr1_2:57411479-57411498 Msa0079510:intron 30.0%
ATTGTTAATTACAGCACCAA+GGG - chr1_2:57411480-57411499 Msa0079510:intron 30.0%
!!! GACCCAGTTTTTGTTTTATA+AGG - chr1_2:57411777-57411796 Msa0079510:CDS 30.0%
CCCCTTATAAAACAAAAACT+GGG + chr1_2:57411782-57411801 None:intergenic 30.0%
!!! CCCAGTTTTTGTTTTATAAG+GGG - chr1_2:57411779-57411798 Msa0079510:CDS 30.0%
TCCCCTTATAAAACAAAAAC+TGG + chr1_2:57411783-57411802 None:intergenic 30.0%
CCAAAGTAGGTCAATTAAAT+TGG + chr1_2:57412033-57412052 None:intergenic 30.0%
CCAATTTAATTGACCTACTT+TGG - chr1_2:57412030-57412049 Msa0079510:five_prime_UTR 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr1_2:57412076-57412095 Msa0079510:five_prime_UTR 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr1_2:57412179-57412198 Msa0079510:five_prime_UTR 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr1_2:57412180-57412199 Msa0079510:five_prime_UTR 30.0%
!! GGCTTTGGATGTTCATATAT+GGG + chr1_2:57408100-57408119 None:intergenic 35.0%
!! TGGCTTTGGATGTTCATATA+TGG + chr1_2:57408101-57408120 None:intergenic 35.0%
!!! GATCAACTAGATTTTGGCTT+TGG + chr1_2:57408115-57408134 None:intergenic 35.0%
TCATTCCCACCAAATAAGAT+TGG - chr1_2:57408177-57408196 Msa0079510:three_prime_UTR 35.0%
!! TTGTAGTGGACATACTAGTT+TGG + chr1_2:57408263-57408282 None:intergenic 35.0%
TGGATTATAAGGGGATTTGT+CGG + chr1_2:57408332-57408351 None:intergenic 35.0%
! ATATTTGGTGAAGGGGTTAT+GGG + chr1_2:57408402-57408421 None:intergenic 35.0%
! TATATTTGGTGAAGGGGTTA+TGG + chr1_2:57408403-57408422 None:intergenic 35.0%
! TGGTGATATATTTGGTGAAG+GGG + chr1_2:57408409-57408428 None:intergenic 35.0%
AGAGAAAATGACTAACGTTG+GGG - chr1_2:57408550-57408569 Msa0079510:three_prime_UTR 35.0%
AAAAATAGTTGCGGAAAGAG+AGG - chr1_2:57408668-57408687 Msa0079510:three_prime_UTR 35.0%
AGAAAAACTAACTTAGCACG+AGG + chr1_2:57408833-57408852 None:intergenic 35.0%
!!! GTTTTGTTTGAGACTGAGAT+AGG - chr1_2:57408989-57409008 Msa0079510:exon 35.0%
ATTTGTGTGCAACACTATTG+AGG - chr1_2:57409031-57409050 Msa0079510:intron 35.0%
TTTGTGTGCAACACTATTGA+GGG - chr1_2:57409032-57409051 Msa0079510:intron 35.0%
AGGGGAATCTTATTAGAAAG+AGG - chr1_2:57409051-57409070 Msa0079510:intron 35.0%
AAGATCACACGGTTACAATT+AGG - chr1_2:57409269-57409288 Msa0079510:intron 35.0%
GAATAAACATGGACAACGTA+TGG - chr1_2:57410034-57410053 Msa0079510:intron 35.0%
ACAACGTATGGTAATCAATC+AGG - chr1_2:57410046-57410065 Msa0079510:intron 35.0%
CAACGTATGGTAATCAATCA+GGG - chr1_2:57410047-57410066 Msa0079510:intron 35.0%
TGTTAATTCCCCCAAACAAA+AGG - chr1_2:57410311-57410330 Msa0079510:intron 35.0%
CATCAATGATCTTAATCGGA+TGG + chr1_2:57410534-57410553 None:intergenic 35.0%
! TTTCTAAAGGATCTAACTGG+TGG + chr1_2:57410754-57410773 None:intergenic 35.0%
TCCTTCACAATTGACAATTG+TGG - chr1_2:57410955-57410974 Msa0079510:intron 35.0%
CCTTCACAATTGACAATTGT+GGG - chr1_2:57410956-57410975 Msa0079510:intron 35.0%
! CATAAAGTCCTTGGTAACTT+GGG + chr1_2:57410983-57411002 None:intergenic 35.0%
! TCATAAAGTCCTTGGTAACT+TGG + chr1_2:57410984-57411003 None:intergenic 35.0%
GCTTTCATTCATAAAGTCCT+TGG + chr1_2:57410992-57411011 None:intergenic 35.0%
CATAATCAGAACCGTTCAAA+AGG + chr1_2:57411026-57411045 None:intergenic 35.0%
CCATCTTTGTCTTCATATGT+TGG + chr1_2:57411051-57411070 None:intergenic 35.0%
CCAACATATGAAGACAAAGA+TGG - chr1_2:57411048-57411067 Msa0079510:intron 35.0%
ATGAAGACAAAGATGGTGAT+TGG - chr1_2:57411055-57411074 Msa0079510:intron 35.0%
GTTACGTCGTGTAACAAATT+TGG - chr1_2:57411217-57411236 Msa0079510:intron 35.0%
! ATTTTTGTCGGAACACAACA+AGG + chr1_2:57411538-57411557 None:intergenic 35.0%
!! AACCAGAAGTGGATTTTTGT+CGG + chr1_2:57411550-57411569 None:intergenic 35.0%
ATGTTTCCAGTTATCATTGC+TGG - chr1_2:57411857-57411876 Msa0079510:CDS 35.0%
ACAAATCCAGCAATGATAAC+TGG + chr1_2:57411866-57411885 None:intergenic 35.0%
GCAAGATCCTTTGTAGTATT+AGG - chr1_2:57411994-57412013 Msa0079510:five_prime_UTR 35.0%
GTAGGTCAATTAAATTGGGA+CGG + chr1_2:57412028-57412047 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr1_2:57412046-57412065 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr1_2:57412215-57412234 Msa0079510:five_prime_UTR 35.0%
! CTTGTCTGTCAAGTTGTAAA+TGG - chr1_2:57412265-57412284 Msa0079510:five_prime_UTR 35.0%
!! TAAATGGAGCTGATTTGTTG+AGG - chr1_2:57412281-57412300 Msa0079510:five_prime_UTR 35.0%
TAACAACAAGCACATGGTAT+GGG + chr1_2:57412340-57412359 None:intergenic 35.0%
!! ATACCATGTGCTTGTTGTTA+CGG - chr1_2:57412340-57412359 Msa0079510:five_prime_UTR 35.0%
TGTTAATAGGTGGGTAGCAA+AGG - chr1_2:57408212-57408231 Msa0079510:three_prime_UTR 40.0%
GGATTATAAGGGGATTTGTC+GGG + chr1_2:57408331-57408350 None:intergenic 40.0%
TGTCAACATCTCCATCCATA+TGG - chr1_2:57408372-57408391 Msa0079510:intron 40.0%
! TATTTGGTGAAGGGGTTATG+GGG + chr1_2:57408401-57408420 None:intergenic 40.0%
! GTGCGTTTAGAAGATGGTTT+TGG + chr1_2:57408429-57408448 None:intergenic 40.0%
AAAACTAACTTAGCACGAGG+AGG + chr1_2:57408830-57408849 None:intergenic 40.0%
TTGTGTGCAACACTATTGAG+GGG - chr1_2:57409033-57409052 Msa0079510:intron 40.0%
TATGGTAATCAATCAGGGCA+TGG - chr1_2:57410052-57410071 Msa0079510:intron 40.0%
! TATTGGATGGTGGCTGAATT+CGG - chr1_2:57410155-57410174 Msa0079510:intron 40.0%
!!! GATTTTTTCTGCGGATAGCA+TGG - chr1_2:57410212-57410231 Msa0079510:intron 40.0%
TCAACGACGATAGAGAATCA+TGG - chr1_2:57410588-57410607 Msa0079510:intron 40.0%
AATTTGTAGGGCACAAGTTG+TGG - chr1_2:57410723-57410742 Msa0079510:intron 40.0%
ATTTGTAGGGCACAAGTTGT+GGG - chr1_2:57410724-57410743 Msa0079510:intron 40.0%
! TGGGAATGGAGCATTTGTTA+AGG - chr1_2:57410837-57410856 Msa0079510:intron 40.0%
! AGCATTTGTTAAGGTGAGCA+TGG - chr1_2:57410846-57410865 Msa0079510:intron 40.0%
TTTGTTAAGGTGAGCATGGA+TGG - chr1_2:57410850-57410869 Msa0079510:intron 40.0%
CCCACAATTGTCAATTGTGA+AGG + chr1_2:57410959-57410978 None:intergenic 40.0%
!! TGTTATGAGTCGGGTTGAAT+TGG + chr1_2:57411249-57411268 None:intergenic 40.0%
AAGCGTCTTCGCATAATGAA+AGG - chr1_2:57411344-57411363 Msa0079510:intron 40.0%
TTCCGACAAAAATCCACTTC+TGG - chr1_2:57411545-57411564 Msa0079510:intron 40.0%
GCAGATTTATCAACCAGAAG+TGG + chr1_2:57411561-57411580 None:intergenic 40.0%
! GTTGATAAATCTGCATCCCA+AGG - chr1_2:57411567-57411586 Msa0079510:intron 40.0%
AGTAAGGTCGAGGCTAATAT+AGG - chr1_2:57411605-57411624 Msa0079510:intron 40.0%
ATTATAAGTCAAGCACACGC+TGG + chr1_2:57411830-57411849 None:intergenic 40.0%
!! GGGAGTACCTAATACTACAA+AGG + chr1_2:57412004-57412023 None:intergenic 40.0%
GTCAATTAAATTGGGACGGA+GGG + chr1_2:57412024-57412043 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr1_2:57412216-57412235 Msa0079510:five_prime_UTR 40.0%
TGCCTTTAGATCCATGAACA+TGG - chr1_2:57412310-57412329 Msa0079510:five_prime_UTR 40.0%
CACCATGTTCATGGATCTAA+AGG + chr1_2:57412315-57412334 None:intergenic 40.0%
CTTTAGATCCATGAACATGG+TGG - chr1_2:57412313-57412332 Msa0079510:five_prime_UTR 40.0%
GTAACAACAAGCACATGGTA+TGG + chr1_2:57412341-57412360 None:intergenic 40.0%
TAGGTGGGTAGCAAAGGAAA+AGG - chr1_2:57408218-57408237 Msa0079510:three_prime_UTR 45.0%
AAAGGAAAAGGCAGGCAAGT+AGG - chr1_2:57408230-57408249 Msa0079510:three_prime_UTR 45.0%
AAGGAAAAGGCAGGCAAGTA+GGG - chr1_2:57408231-57408250 Msa0079510:three_prime_UTR 45.0%
TTGTCGGGAAAATGAGGTCA+TGG + chr1_2:57408316-57408335 None:intergenic 45.0%
!! CGTGTATGGGTTTTGATGGT+TGG + chr1_2:57408352-57408371 None:intergenic 45.0%
!! GACACGTGTATGGGTTTTGA+TGG + chr1_2:57408356-57408375 None:intergenic 45.0%
GGAGATGTTGACACGTGTAT+GGG + chr1_2:57408365-57408384 None:intergenic 45.0%
TGGAGATGTTGACACGTGTA+TGG + chr1_2:57408366-57408385 None:intergenic 45.0%
TTATGGGGGAACCATATGGA+TGG + chr1_2:57408386-57408405 None:intergenic 45.0%
! ATTTGGTGAAGGGGTTATGG+GGG + chr1_2:57408400-57408419 None:intergenic 45.0%
GCCTCTGTAGCTGAAAACAA+AGG - chr1_2:57408770-57408789 Msa0079510:three_prime_UTR 45.0%
!!! GCCTTTGTTTTCAGCTACAG+AGG + chr1_2:57408774-57408793 None:intergenic 45.0%
! TTTTCTGCGGATAGCATGGT+TGG - chr1_2:57410216-57410235 Msa0079510:intron 45.0%
GCATAAATTCGTGCAGTCGA+TGG - chr1_2:57410627-57410646 Msa0079510:intron 45.0%
! GAAGCAGATAAGAGCACAAG+TGG - chr1_2:57410811-57410830 Msa0079510:intron 45.0%
! ATAAGAGCACAAGTGGTGGT+GGG - chr1_2:57410818-57410837 Msa0079510:intron 45.0%
AGGTCCACCTTACGTAGATA+TGG + chr1_2:57410880-57410899 None:intergenic 45.0%
GATGGTGATTGGATGCTTGT+TGG - chr1_2:57411066-57411085 Msa0079510:intron 45.0%
!! TGCTTGTTGGTGATGTTCCT+TGG - chr1_2:57411079-57411098 Msa0079510:intron 45.0%
!! GCTTGTTGGTGATGTTCCTT+GGG - chr1_2:57411080-57411099 Msa0079510:intron 45.0%
!! GTTGGTTCGGTTCAGATCAT+CGG + chr1_2:57411179-57411198 None:intergenic 45.0%
TCGCATAATGAAAGGTTCCG+AGG - chr1_2:57411352-57411371 Msa0079510:intron 45.0%
ATGAAAGGTTCCGAGGCAAT+TGG - chr1_2:57411359-57411378 Msa0079510:intron 45.0%
TGAAAGGTTCCGAGGCAATT+GGG - chr1_2:57411360-57411379 Msa0079510:intron 45.0%
TTTACCTAGCCCAATTGCCT+CGG + chr1_2:57411372-57411391 None:intergenic 45.0%
! TTGCATTTTTCCACTGCCCT+TGG + chr1_2:57411499-57411518 None:intergenic 45.0%
GGTCAATTAAATTGGGACGG+AGG + chr1_2:57412025-57412044 None:intergenic 45.0%
!! AAATAAAAAAAATAAAGTAT+TGG - chr1_2:57410138-57410157 Msa0079510:intron 5.0%
TGGGTAGCAAAGGAAAAGGC+AGG - chr1_2:57408222-57408241 Msa0079510:three_prime_UTR 50.0%
AGGAAAAGGCAGGCAAGTAG+GGG - chr1_2:57408232-57408251 Msa0079510:three_prime_UTR 50.0%
GGGGATTTGTCGGGAAAATG+AGG + chr1_2:57408322-57408341 None:intergenic 50.0%
TGGAAGACCGAGTCGTAACT+CGG + chr1_2:57408618-57408637 None:intergenic 50.0%
ACTAACTTAGCACGAGGAGG+AGG + chr1_2:57408827-57408846 None:intergenic 50.0%
GGTAATCAATCAGGGCATGG+TGG - chr1_2:57410055-57410074 Msa0079510:intron 50.0%
AATCAATCAGGGCATGGTGG+AGG - chr1_2:57410058-57410077 Msa0079510:intron 50.0%
! CGGATAGCATGGTTGGTTGT+CGG - chr1_2:57410223-57410242 Msa0079510:intron 50.0%
! GGATAGCATGGTTGGTTGTC+GGG - chr1_2:57410224-57410243 Msa0079510:intron 50.0%
GTGACACGCACACAAGACAA+GGG + chr1_2:57410368-57410387 None:intergenic 50.0%
TGAATGCGTGCAGTCGTTGA+CGG + chr1_2:57410492-57410511 None:intergenic 50.0%
! GCAGATAAGAGCACAAGTGG+TGG - chr1_2:57410814-57410833 Msa0079510:intron 50.0%
! GATAAGAGCACAAGTGGTGG+TGG - chr1_2:57410817-57410836 Msa0079510:intron 50.0%
TGGCGCACCATATCTACGTA+AGG - chr1_2:57410870-57410889 Msa0079510:intron 50.0%
CGCACCATATCTACGTAAGG+TGG - chr1_2:57410873-57410892 Msa0079510:intron 50.0%
TTGTGGGTCCCAAGTTACCA+AGG - chr1_2:57410972-57410991 Msa0079510:intron 50.0%
AAAAGGGCTACTCACTCCCA+AGG + chr1_2:57411099-57411118 None:intergenic 50.0%
AATTACAGCACCAAGGGCAG+TGG - chr1_2:57411486-57411505 Msa0079510:intron 50.0%
TGCATCCCAAGGAAGCAAGT+TGG - chr1_2:57411578-57411597 Msa0079510:intron 50.0%
! TCGAGCCAACTTGCTTCCTT+GGG + chr1_2:57411586-57411605 None:intergenic 50.0%
!! GAAGCAAGTTGGCTCGAGTA+AGG - chr1_2:57411589-57411608 Msa0079510:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr1_2:57412220-57412239 Msa0079510:five_prime_UTR 50.0%
GTATGGGTCCACCATGTTCA+TGG + chr1_2:57412324-57412343 None:intergenic 50.0%
!! CTTGTTGTTACGGCCCTCAA+TGG - chr1_2:57412350-57412369 Msa0079510:five_prime_UTR 50.0%
TTGTTACGGCCCTCAATGGA+GGG - chr1_2:57412354-57412373 Msa0079510:five_prime_UTR 50.0%
!! GTAGTGGATCCCTCCATTGA+GGG + chr1_2:57412366-57412385 None:intergenic 50.0%
!! AGTAGTGGATCCCTCCATTG+AGG + chr1_2:57412367-57412386 None:intergenic 50.0%
GGGGTTATGGGGGAACCATA+TGG + chr1_2:57408390-57408409 None:intergenic 55.0%
GAGGAGACCGAGTTACGACT+CGG - chr1_2:57408608-57408627 Msa0079510:three_prime_UTR 55.0%
!! GAGTTACGACTCGGTCTTCC+AGG - chr1_2:57408617-57408636 Msa0079510:three_prime_UTR 55.0%
CTTCCAGGTGCAGGTGATCA+TGG - chr1_2:57408632-57408651 Msa0079510:three_prime_UTR 55.0%
TCTCCATGATCACCTGCACC+TGG + chr1_2:57408638-57408657 None:intergenic 55.0%
! GGATGGTGGCTGAATTCGGT+TGG - chr1_2:57410159-57410178 Msa0079510:intron 55.0%
GGTGACACGCACACAAGACA+AGG + chr1_2:57410369-57410388 None:intergenic 55.0%
GTAGGGCACAAGTTGTGGGA+TGG - chr1_2:57410728-57410747 Msa0079510:intron 55.0%
!! AGCACAAGTGGTGGTGGGAA+TGG - chr1_2:57410823-57410842 Msa0079510:intron 55.0%
! CTCGAGCCAACTTGCTTCCT+TGG + chr1_2:57411587-57411606 None:intergenic 55.0%
!! AGTTGGCTCGAGTAAGGTCG+AGG - chr1_2:57411595-57411614 Msa0079510:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr1_2:57412224-57412243 Msa0079510:five_prime_UTR 55.0%
GGGCCGTAACAACAAGCACA+TGG + chr1_2:57412346-57412365 None:intergenic 55.0%
GTTGTTACGGCCCTCAATGG+AGG - chr1_2:57412353-57412372 Msa0079510:five_prime_UTR 55.0%
AAAGGCAGGCAAGTAGGGGC+AGG - chr1_2:57408236-57408255 Msa0079510:three_prime_UTR 60.0%
! GCACACAAGACAAGGGCGTG+TGG + chr1_2:57410361-57410380 None:intergenic 60.0%
CCAGCGCATCTGACAGCTCT+TGG + chr1_2:57410921-57410940 None:intergenic 60.0%
CCAAGAGCTGTCAGATGCGC+TGG - chr1_2:57410918-57410937 Msa0079510:intron 60.0%
GGTTCCGAGGCAATTGGGCT+AGG - chr1_2:57411365-57411384 Msa0079510:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr1_2:57412223-57412242 Msa0079510:five_prime_UTR 60.0%
GTGTACTACTCCCTCCGTCC+CGG + chr1_2:57412237-57412256 None:intergenic 60.0%
!! CGACTCGGTCTTCCAGGTGC+AGG - chr1_2:57408623-57408642 Msa0079510:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57408094 57412438 57408094 ID=Msa0079510;Name=Msa0079510
chr1_2 mRNA 57408094 57412438 57408094 ID=Msa0079510-mRNA-1;Parent=Msa0079510;Name=Msa0079510-mRNA-1;_AED=0.22;_eAED=0.22;_QI=463|1|1|1|0.5|0.6|5|678|251
chr1_2 exon 57408094 57408287 57408094 ID=Msa0079510-mRNA-1:exon:18210;Parent=Msa0079510-mRNA-1
chr1_2 exon 57408517 57409038 57408517 ID=Msa0079510-mRNA-1:exon:18209;Parent=Msa0079510-mRNA-1
chr1_2 exon 57409146 57409207 57409146 ID=Msa0079510-mRNA-1:exon:18208;Parent=Msa0079510-mRNA-1
chr1_2 exon 57409429 57409800 57409429 ID=Msa0079510-mRNA-1:exon:18207;Parent=Msa0079510-mRNA-1
chr1_2 exon 57411692 57412438 57411692 ID=Msa0079510-mRNA-1:exon:18206;Parent=Msa0079510-mRNA-1
chr1_2 five_prime_UTR 57411976 57412438 57411976 ID=Msa0079510-mRNA-1:five_prime_utr;Parent=Msa0079510-mRNA-1
chr1_2 CDS 57411692 57411975 57411692 ID=Msa0079510-mRNA-1:cds;Parent=Msa0079510-mRNA-1
chr1_2 CDS 57409429 57409800 57409429 ID=Msa0079510-mRNA-1:cds;Parent=Msa0079510-mRNA-1
chr1_2 CDS 57409146 57409207 57409146 ID=Msa0079510-mRNA-1:cds;Parent=Msa0079510-mRNA-1
chr1_2 CDS 57409001 57409038 57409001 ID=Msa0079510-mRNA-1:cds;Parent=Msa0079510-mRNA-1
chr1_2 three_prime_UTR 57408517 57409000 57408517 ID=Msa0079510-mRNA-1:three_prime_utr;Parent=Msa0079510-mRNA-1
chr1_2 three_prime_UTR 57408094 57408287 57408094 ID=Msa0079510-mRNA-1:three_prime_utr;Parent=Msa0079510-mRNA-1
Gene Sequence

>Msa0079510

ATGACTAACGTTGGGGATGCAGAGAGAGACAAGTACAGCTTGATAAATTTTGAGGAGACCGAGTTACGACTCGGTCTTCCAGGTGCAGGTGATCATGGAGAATCACCTGTTAAAAATAGTTGCGGAAAGAGAGGTTTCTCAGAAACTGCTAATGTTGATTTGAAGCTTAATCTTTCTCCTATAAATGATTCTGCTTCATCTTCTTCAACTATAGCCTCTGTAGCTGAAAACAAAGGCAAAGACACAACAACTTCTGCTACTGTTACTCCTCCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCCTTTAGAAAGAACATAGTAAATGTTCAAAAGAGCAATAATGAATCAGAAGCAGATAAGAGCACAAGTGGTGGTGGGAATGGAGCATTTGTTAAGGTGAGCATGGATGGCGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGACAATTGTGGGTCCCAAGTTACCAAGGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTCGTTCAATCGTGCAAGCGTCTTCGCATAATGAAAGGTTCCGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAATGCAAGAACAGAAGCTGA
Protein sequence

>Msa0079510

MTNVGDAERDKYSLINFEETELRLGLPGAGDHGESPVKNSCGKRGFSETANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVTPPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEADKSTSGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS*