Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196340 | XP_013462764.1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 3.85e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196340 | A0A072V456 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.84e-77 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa0196340 | 0.803411 | 3.531932e-49 | -8.615850e-47 |
| Msa0014570 | Msa0196340 | 0.805097 | 1.573158e-49 | -8.615850e-47 |
| Msa0032320 | Msa0196340 | 0.844592 | 6.871394e-59 | -8.615850e-47 |
| Msa0039250 | Msa0196340 | 0.805387 | 1.368022e-49 | -8.615850e-47 |
| Msa0055070 | Msa0196340 | 0.820730 | 5.877568e-53 | -8.615850e-47 |
| Msa0079510 | Msa0196340 | 0.817658 | 2.942286e-52 | -8.615850e-47 |
| Msa0090390 | Msa0196340 | 0.804979 | 1.665820e-49 | -8.615850e-47 |
| Msa0101020 | Msa0196340 | 0.820646 | 6.145981e-53 | -8.615850e-47 |
| Msa0108390 | Msa0196340 | 0.835908 | 1.275910e-56 | -8.615850e-47 |
| Msa0115830 | Msa0196340 | 0.800691 | 1.279780e-48 | -8.615850e-47 |
| Msa0133720 | Msa0196340 | 0.811317 | 7.439197e-51 | -8.615850e-47 |
| Msa0133820 | Msa0196340 | 0.815254 | 1.015578e-51 | -8.615850e-47 |
| Msa0134000 | Msa0196340 | 0.803860 | 2.848886e-49 | -8.615850e-47 |
| Msa0142460 | Msa0196340 | 0.806202 | 9.224777e-50 | -8.615850e-47 |
| Msa0145110 | Msa0196340 | 0.817218 | 3.695697e-52 | -8.615850e-47 |
| Msa0154440 | Msa0196340 | 0.808092 | 3.670843e-50 | -8.615850e-47 |
| Msa0181000 | Msa0196340 | 0.809122 | 2.211540e-50 | -8.615850e-47 |
| Msa0187030 | Msa0196340 | 0.802666 | 5.033938e-49 | -8.615850e-47 |
| Msa0191890 | Msa0196340 | 0.814458 | 1.524927e-51 | -8.615850e-47 |
| Msa0196340 | Msa0212750 | -0.819531 | 1.106134e-52 | -8.615850e-47 |
| Msa0196340 | Msa0230370 | 0.853529 | 2.249744e-61 | -8.615850e-47 |
| Msa0196340 | Msa0238230 | 0.961290 | 1.568728e-119 | -8.615850e-47 |
| Msa0196340 | Msa0261160 | 0.800722 | 1.261209e-48 | -8.615850e-47 |
| Msa0196340 | Msa0275660 | 0.841871 | 3.653624e-58 | -8.615850e-47 |
| Msa0196340 | Msa0277420 | 0.832694 | 8.165120e-56 | -8.615850e-47 |
| Msa0196340 | Msa0312530 | 0.820474 | 6.729941e-53 | -8.615850e-47 |
| Msa0196340 | Msa0317270 | 0.827391 | 1.605369e-54 | -8.615850e-47 |
| Msa0196340 | Msa0392200 | 0.802296 | 6.001188e-49 | -8.615850e-47 |
| Msa0196340 | Msa0403660 | 0.827382 | 1.613203e-54 | -8.615850e-47 |
| Msa0196340 | Msa0431770 | 0.805356 | 1.388580e-49 | -8.615850e-47 |
| Msa0196340 | Msa0436370 | 0.813439 | 2.558244e-51 | -8.615850e-47 |
| Msa0196340 | Msa0437510 | 0.848895 | 4.577681e-60 | -8.615850e-47 |
| Msa0196340 | Msa0465920 | 0.802715 | 4.919247e-49 | -8.615850e-47 |
| Msa0196340 | Msa0465960 | 0.815194 | 1.047700e-51 | -8.615850e-47 |
| Msa0196340 | Msa0572480 | 0.802664 | 5.039966e-49 | -8.615850e-47 |
| Msa0196340 | Msa0576890 | 0.818219 | 2.197164e-52 | -8.615850e-47 |
| Msa0196340 | Msa0578090 | 0.806323 | 8.696662e-50 | -8.615850e-47 |
| Msa0196340 | Msa0583500 | 0.800113 | 1.678402e-48 | -8.615850e-47 |
| Msa0196340 | Msa0608200 | 0.817711 | 2.862540e-52 | -8.615850e-47 |
| Msa0196340 | Msa0619180 | 0.843456 | 1.385837e-58 | -8.615850e-47 |
| Msa0196340 | Msa0633760 | 0.813708 | 2.232108e-51 | -8.615850e-47 |
| Msa0196340 | Msa0648520 | 0.839693 | 1.360025e-57 | -8.615850e-47 |
| Msa0196340 | Msa0691050 | 0.844452 | 7.493227e-59 | -8.615850e-47 |
| Msa0196340 | Msa0718070 | 0.802208 | 6.255414e-49 | -8.615850e-47 |
| Msa0196340 | Msa0740720 | 0.833968 | 3.931344e-56 | -8.615850e-47 |
| Msa0196340 | Msa0750250 | 0.803352 | 3.632163e-49 | -8.615850e-47 |
| Msa0196340 | Msa0784410 | 0.801614 | 8.284593e-49 | -8.615850e-47 |
| Msa0196340 | Msa0784620 | 0.818965 | 1.488340e-52 | -8.615850e-47 |
| Msa0196340 | Msa0786130 | 0.803969 | 2.704595e-49 | -8.615850e-47 |
| Msa0196340 | Msa0824730 | 0.806386 | 8.435803e-50 | -8.615850e-47 |
| Msa0196340 | Msa0861450 | 0.838096 | 3.522622e-57 | -8.615850e-47 |
| Msa0196340 | Msa0895310 | 0.800876 | 1.173111e-48 | -8.615850e-47 |
| Msa0196340 | Msa0929950 | 0.809532 | 1.806701e-50 | -8.615850e-47 |
| Msa0196340 | Msa0945120 | 0.802399 | 5.714285e-49 | -8.615850e-47 |
| Msa0196340 | Msa0947530 | -0.829414 | 5.216343e-55 | -8.615850e-47 |
| Msa0196340 | Msa1033970 | 0.808337 | 3.254428e-50 | -8.615850e-47 |
| Msa0196340 | Msa1078410 | 0.800659 | 1.299209e-48 | -8.615850e-47 |
| Msa0196340 | Msa1087510 | -0.813642 | 2.308531e-51 | -8.615850e-47 |
| Msa0196340 | Msa1094540 | -0.809016 | 2.329997e-50 | -8.615850e-47 |
| Msa0196340 | Msa1158770 | 0.801990 | 6.937471e-49 | -8.615850e-47 |
| Msa0196340 | Msa1162830 | 0.820882 | 5.422163e-53 | -8.615850e-47 |
| Msa0196340 | Msa1178370 | 0.816841 | 4.490666e-52 | -8.615850e-47 |
| Msa0196340 | Msa1188560 | 0.802639 | 5.100646e-49 | -8.615850e-47 |
| Msa0196340 | Msa1204100 | -0.803813 | 2.914862e-49 | -8.615850e-47 |
| Msa0196340 | Msa1211050 | -0.818242 | 2.170868e-52 | -8.615850e-47 |
| Msa0196340 | Msa1223330 | 0.821459 | 3.991868e-53 | -8.615850e-47 |
| Msa0196340 | Msa1296300 | 0.809595 | 1.750927e-50 | -8.615850e-47 |
| Msa0196340 | Msa1319820 | 0.820374 | 7.095463e-53 | -8.615850e-47 |
| Msa0196340 | Msa1333970 | 0.803771 | 2.973380e-49 | -8.615850e-47 |
| Msa0196340 | Msa1340040 | -0.801895 | 7.254632e-49 | -8.615850e-47 |
| Msa0196340 | Msa1345320 | 0.951764 | 1.023931e-109 | -8.615850e-47 |
| Msa0196340 | Msa1366300 | 0.803309 | 3.707781e-49 | -8.615850e-47 |
| Msa0196340 | Msa1379590 | 0.809285 | 2.041113e-50 | -8.615850e-47 |
| Msa0196340 | Msa1379850 | 0.813832 | 2.096285e-51 | -8.615850e-47 |
| Msa0196340 | Msa1390120 | 0.805040 | 1.617490e-49 | -8.615850e-47 |
| Msa0196340 | Msa1395530 | 0.808630 | 2.817825e-50 | -8.615850e-47 |
| Msa0196340 | Msa1396780 | 0.841812 | 3.786413e-58 | -8.615850e-47 |
| Msa0196340 | Msa1401270 | 0.812386 | 4.352014e-51 | -8.615850e-47 |
| Msa0196340 | Msa1424640 | 0.810110 | 1.356784e-50 | -8.615850e-47 |
| Msa0196340 | Msa1433220 | 0.830258 | 3.249297e-55 | -8.615850e-47 |
| Msa0196340 | Msa1447110 | 0.816351 | 5.782546e-52 | -8.615850e-47 |
| Msa0196340 | Msa1449910 | 0.849129 | 3.941970e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196340 | MtrunA17_Chr2g0287961 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 3.54e-81 | 233 |
| Msa0196340 | MtrunA17_Chr4g0074501 | 71.296 | 108 | 29 | 2 | 1 | 106 | 1 | 108 | 5.12e-53 | 162 |
| Msa0196340 | MtrunA17_Chr0c30g0494111 | 68.657 | 67 | 19 | 2 | 42 | 106 | 1 | 67 | 8.39e-27 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196340 | AT5G19190.1 | 43.810 | 105 | 48 | 4 | 1 | 98 | 1 | 101 | 1.71e-17 | 73.6 |
| Msa0196340 | AT3G06070.1 | 42.045 | 88 | 46 | 3 | 1 | 83 | 1 | 88 | 8.79e-16 | 68.9 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCTTGTACCTCCTTCT+TGG | 0.149558 | 2_1:-13522397 | None:intergenic |
| CTAGAAACTAAATACAATTT+TGG | 0.181446 | 2_1:+13521806 | Msa0196340:five_prime_UTR |
| CTTCATCTTCATCCATTATT+AGG | 0.195790 | 2_1:-13521925 | None:intergenic |
| ATTTAGGTGTATATAATATA+TGG | 0.250639 | 2_1:-13522698 | None:intergenic |
| TTAATATCATTAACAGAAAA+AGG | 0.277524 | 2_1:-13522820 | None:intergenic |
| TAATTAATTCTTTAGCCTTT+AGG | 0.283220 | 2_1:+13522606 | Msa0196340:three_prime_UTR |
| TTCTATTCTTATTTATATAA+AGG | 0.283430 | 2_1:+13522655 | Msa0196340:three_prime_UTR |
| ATACACGATGACTAATATTT+AGG | 0.294719 | 2_1:-13522714 | None:intergenic |
| TTCTTGGCTGTGTTGCTTGT+GGG | 0.315774 | 2_1:-13522381 | None:intergenic |
| GGAAATTGCTCTCCTAATAA+TGG | 0.320698 | 2_1:+13521913 | Msa0196340:CDS |
| TCAACCTGCAAACTCTCTTC+AGG | 0.344380 | 2_1:+13521961 | Msa0196340:CDS |
| AATTAACATGGAGGTTGCTT+TGG | 0.348717 | 2_1:+13521853 | Msa0196340:exon |
| CATGGAGGTTGCTTTGGAAA+TGG | 0.372075 | 2_1:+13521859 | Msa0196340:exon |
| TGTTTGATAGAATTCTTGTT+AGG | 0.386930 | 2_1:-13522484 | None:intergenic |
| GCCTTTAGGCAATAATTGTA+TGG | 0.401046 | 2_1:+13522620 | Msa0196340:three_prime_UTR |
| AGAAGAGAAAGCAAAGGAAC+AGG | 0.411669 | 2_1:+13522349 | Msa0196340:CDS |
| CTTCTTGGCTGTGTTGCTTG+TGG | 0.415079 | 2_1:-13522382 | None:intergenic |
| ATCACACAGCTTTAACTAGA+AGG | 0.419335 | 2_1:-13522532 | None:intergenic |
| AGAACCTGAAGAGAGTTTGC+AGG | 0.436707 | 2_1:-13521965 | None:intergenic |
| AGTGGAGGTTGCAAAACCTT+TGG | 0.437819 | 2_1:-13522749 | None:intergenic |
| AAATATTAGTCATCGTGTAT+AGG | 0.451262 | 2_1:+13522717 | Msa0196340:three_prime_UTR |
| AATTCTATCAAACAGTGAAA+TGG | 0.469397 | 2_1:+13522493 | Msa0196340:exon |
| GCCATACAATTATTGCCTAA+AGG | 0.474343 | 2_1:-13522621 | None:intergenic |
| CACAAGCAACACAGCCAAGA+AGG | 0.493229 | 2_1:+13522383 | Msa0196340:CDS |
| TATAAAGGTGGATATGTACA+TGG | 0.524484 | 2_1:+13522670 | Msa0196340:three_prime_UTR |
| AAGAAATCAAACTGTGGAGG+AGG | 0.531737 | 2_1:-13522307 | None:intergenic |
| TATTCTTATTTATATAAAGG+TGG | 0.546547 | 2_1:+13522658 | Msa0196340:three_prime_UTR |
| CCAAGAAGGAGGTACAAGAA+AGG | 0.549607 | 2_1:+13522397 | Msa0196340:CDS |
| TATTAGTCATCGTGTATAGG+AGG | 0.579038 | 2_1:+13522720 | Msa0196340:three_prime_UTR |
| GTATAGGAGGATTCAACCAA+AGG | 0.594707 | 2_1:+13522733 | Msa0196340:three_prime_UTR |
| TTGATTAGAAGAGAAAGCAA+AGG | 0.610534 | 2_1:+13522343 | Msa0196340:CDS |
| TTTGCAGGTTGAGAAGCAAG+TGG | 0.620205 | 2_1:-13521950 | None:intergenic |
| ATAAAGGTGGATATGTACAT+GGG | 0.623401 | 2_1:+13522671 | Msa0196340:three_prime_UTR |
| TAGAAGAAATCAAACTGTGG+AGG | 0.634181 | 2_1:-13522310 | None:intergenic |
| TTTATATTGAATTAACATGG+AGG | 0.678774 | 2_1:+13521844 | Msa0196340:exon |
| AAGCAACACAGCCAAGAAGG+AGG | 0.682199 | 2_1:+13522386 | Msa0196340:CDS |
| AATGCTTGTCCACACAGTGG+AGG | 0.692722 | 2_1:-13522764 | None:intergenic |
| CAAAATGCTTGTCCACACAG+TGG | 0.720567 | 2_1:-13522767 | None:intergenic |
| TCATAGAAGAAATCAAACTG+TGG | 0.762193 | 2_1:-13522313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAACTAATTTTATTTTGT+AGG | + | chr2_1:13522264-13522283 | Msa0196340:intron | 10.0% |
| !!! | TTCTATTCTTATTTATATAA+AGG | + | chr2_1:13522655-13522674 | Msa0196340:three_prime_UTR | 10.0% |
| !!! | TTAAACTAATTTTATTTTGT+AGG | + | chr2_1:13522264-13522283 | Msa0196340:intron | 10.0% |
| !!! | TTCTATTCTTATTTATATAA+AGG | + | chr2_1:13522655-13522674 | Msa0196340:three_prime_UTR | 10.0% |
| !!! | TCTTTTATATTGAATTAACA+TGG | + | chr2_1:13521841-13521860 | Msa0196340:exon | 15.0% |
| !!! | TATTCTTATTTATATAAAGG+TGG | + | chr2_1:13522658-13522677 | Msa0196340:three_prime_UTR | 15.0% |
| !! | ATTTAGGTGTATATAATATA+TGG | - | chr2_1:13522701-13522720 | None:intergenic | 15.0% |
| !! | TTAATATCATTAACAGAAAA+AGG | - | chr2_1:13522823-13522842 | None:intergenic | 15.0% |
| !!! | TCTTTTATATTGAATTAACA+TGG | + | chr2_1:13521841-13521860 | Msa0196340:exon | 15.0% |
| !!! | TATTCTTATTTATATAAAGG+TGG | + | chr2_1:13522658-13522677 | Msa0196340:three_prime_UTR | 15.0% |
| !! | ATTTAGGTGTATATAATATA+TGG | - | chr2_1:13522701-13522720 | None:intergenic | 15.0% |
| !! | TTAATATCATTAACAGAAAA+AGG | - | chr2_1:13522823-13522842 | None:intergenic | 15.0% |
| !!! | CTAGAAACTAAATACAATTT+TGG | + | chr2_1:13521806-13521825 | Msa0196340:five_prime_UTR | 20.0% |
| !! | TTTATATTGAATTAACATGG+AGG | + | chr2_1:13521844-13521863 | Msa0196340:exon | 20.0% |
| !! | TATATTAGTATGTAACTATG+AGG | - | chr2_1:13522025-13522044 | None:intergenic | 20.0% |
| !! | AAAATGTCATAATTGAAACT+TGG | - | chr2_1:13522080-13522099 | None:intergenic | 20.0% |
| !! | TTAAAGAATTTATTTGTGCA+TGG | + | chr2_1:13522102-13522121 | Msa0196340:intron | 20.0% |
| !!! | TAATTAATTCTTTAGCCTTT+AGG | + | chr2_1:13522606-13522625 | Msa0196340:three_prime_UTR | 20.0% |
| !!! | CTAGAAACTAAATACAATTT+TGG | + | chr2_1:13521806-13521825 | Msa0196340:five_prime_UTR | 20.0% |
| !! | TTTATATTGAATTAACATGG+AGG | + | chr2_1:13521844-13521863 | Msa0196340:exon | 20.0% |
| !! | TATATTAGTATGTAACTATG+AGG | - | chr2_1:13522025-13522044 | None:intergenic | 20.0% |
| !! | AAAATGTCATAATTGAAACT+TGG | - | chr2_1:13522080-13522099 | None:intergenic | 20.0% |
| !! | TTAAAGAATTTATTTGTGCA+TGG | + | chr2_1:13522102-13522121 | Msa0196340:intron | 20.0% |
| !!! | TAATTAATTCTTTAGCCTTT+AGG | + | chr2_1:13522606-13522625 | Msa0196340:three_prime_UTR | 20.0% |
| !! | ATTTTGCATATAGAGAAGAA+GGG | - | chr2_1:13522236-13522255 | None:intergenic | 25.0% |
| !! | TATTTTGCATATAGAGAAGA+AGG | - | chr2_1:13522237-13522256 | None:intergenic | 25.0% |
| ! | TGTTTGATAGAATTCTTGTT+AGG | - | chr2_1:13522487-13522506 | None:intergenic | 25.0% |
| ! | AATTCTATCAAACAGTGAAA+TGG | + | chr2_1:13522493-13522512 | Msa0196340:exon | 25.0% |
| ! | ATACACGATGACTAATATTT+AGG | - | chr2_1:13522717-13522736 | None:intergenic | 25.0% |
| ! | AAATATTAGTCATCGTGTAT+AGG | + | chr2_1:13522717-13522736 | Msa0196340:three_prime_UTR | 25.0% |
| !! | ATTTTGCATATAGAGAAGAA+GGG | - | chr2_1:13522236-13522255 | None:intergenic | 25.0% |
| !! | TATTTTGCATATAGAGAAGA+AGG | - | chr2_1:13522237-13522256 | None:intergenic | 25.0% |
| ! | TGTTTGATAGAATTCTTGTT+AGG | - | chr2_1:13522487-13522506 | None:intergenic | 25.0% |
| ! | AATTCTATCAAACAGTGAAA+TGG | + | chr2_1:13522493-13522512 | Msa0196340:exon | 25.0% |
| ! | ATACACGATGACTAATATTT+AGG | - | chr2_1:13522717-13522736 | None:intergenic | 25.0% |
| ! | AAATATTAGTCATCGTGTAT+AGG | + | chr2_1:13522717-13522736 | Msa0196340:three_prime_UTR | 25.0% |
| !!! | ATTTTTTGCAAACTTGAGCA+AGG | + | chr2_1:13521892-13521911 | Msa0196340:CDS | 30.0% |
| CTTCATCTTCATCCATTATT+AGG | - | chr2_1:13521928-13521947 | None:intergenic | 30.0% | |
| GTGCATGTATTTAATTAAGG+AGG | - | chr2_1:13522003-13522022 | None:intergenic | 30.0% | |
| GAGGTGCATGTATTTAATTA+AGG | - | chr2_1:13522006-13522025 | None:intergenic | 30.0% | |
| CATAATTGAAACTTGGAAGA+AGG | - | chr2_1:13522073-13522092 | None:intergenic | 30.0% | |
| TCATAGAAGAAATCAAACTG+TGG | - | chr2_1:13522316-13522335 | None:intergenic | 30.0% | |
| TTGATTAGAAGAGAAAGCAA+AGG | + | chr2_1:13522343-13522362 | Msa0196340:CDS | 30.0% | |
| TATAAAGGTGGATATGTACA+TGG | + | chr2_1:13522670-13522689 | Msa0196340:three_prime_UTR | 30.0% | |
| ATAAAGGTGGATATGTACAT+GGG | + | chr2_1:13522671-13522690 | Msa0196340:three_prime_UTR | 30.0% | |
| !!! | ATTTTTTGCAAACTTGAGCA+AGG | + | chr2_1:13521892-13521911 | Msa0196340:CDS | 30.0% |
| CTTCATCTTCATCCATTATT+AGG | - | chr2_1:13521928-13521947 | None:intergenic | 30.0% | |
| GTGCATGTATTTAATTAAGG+AGG | - | chr2_1:13522003-13522022 | None:intergenic | 30.0% | |
| GAGGTGCATGTATTTAATTA+AGG | - | chr2_1:13522006-13522025 | None:intergenic | 30.0% | |
| CATAATTGAAACTTGGAAGA+AGG | - | chr2_1:13522073-13522092 | None:intergenic | 30.0% | |
| TCATAGAAGAAATCAAACTG+TGG | - | chr2_1:13522316-13522335 | None:intergenic | 30.0% | |
| TTGATTAGAAGAGAAAGCAA+AGG | + | chr2_1:13522343-13522362 | Msa0196340:CDS | 30.0% | |
| TATAAAGGTGGATATGTACA+TGG | + | chr2_1:13522670-13522689 | Msa0196340:three_prime_UTR | 30.0% | |
| ATAAAGGTGGATATGTACAT+GGG | + | chr2_1:13522671-13522690 | Msa0196340:three_prime_UTR | 30.0% | |
| AATTAACATGGAGGTTGCTT+TGG | + | chr2_1:13521853-13521872 | Msa0196340:exon | 35.0% | |
| GGAAATTGCTCTCCTAATAA+TGG | + | chr2_1:13521913-13521932 | Msa0196340:CDS | 35.0% | |
| TTTATTTGTGCATGGCAGTT+CGG | + | chr2_1:13522110-13522129 | Msa0196340:intron | 35.0% | |
| TAGAAGAAATCAAACTGTGG+AGG | - | chr2_1:13522313-13522332 | None:intergenic | 35.0% | |
| ! | ATCACACAGCTTTAACTAGA+AGG | - | chr2_1:13522535-13522554 | None:intergenic | 35.0% |
| GCCTTTAGGCAATAATTGTA+TGG | + | chr2_1:13522620-13522639 | Msa0196340:three_prime_UTR | 35.0% | |
| GCCATACAATTATTGCCTAA+AGG | - | chr2_1:13522624-13522643 | None:intergenic | 35.0% | |
| TATTAGTCATCGTGTATAGG+AGG | + | chr2_1:13522720-13522739 | Msa0196340:three_prime_UTR | 35.0% | |
| AATTAACATGGAGGTTGCTT+TGG | + | chr2_1:13521853-13521872 | Msa0196340:exon | 35.0% | |
| GGAAATTGCTCTCCTAATAA+TGG | + | chr2_1:13521913-13521932 | Msa0196340:CDS | 35.0% | |
| TTTATTTGTGCATGGCAGTT+CGG | + | chr2_1:13522110-13522129 | Msa0196340:intron | 35.0% | |
| TAGAAGAAATCAAACTGTGG+AGG | - | chr2_1:13522313-13522332 | None:intergenic | 35.0% | |
| ! | ATCACACAGCTTTAACTAGA+AGG | - | chr2_1:13522535-13522554 | None:intergenic | 35.0% |
| GCCTTTAGGCAATAATTGTA+TGG | + | chr2_1:13522620-13522639 | Msa0196340:three_prime_UTR | 35.0% | |
| GCCATACAATTATTGCCTAA+AGG | - | chr2_1:13522624-13522643 | None:intergenic | 35.0% | |
| TATTAGTCATCGTGTATAGG+AGG | + | chr2_1:13522720-13522739 | Msa0196340:three_prime_UTR | 35.0% | |
| AAGAAATCAAACTGTGGAGG+AGG | - | chr2_1:13522310-13522329 | None:intergenic | 40.0% | |
| AGAAGAGAAAGCAAAGGAAC+AGG | + | chr2_1:13522349-13522368 | Msa0196340:CDS | 40.0% | |
| GTATAGGAGGATTCAACCAA+AGG | + | chr2_1:13522733-13522752 | Msa0196340:three_prime_UTR | 40.0% | |
| AAGAAATCAAACTGTGGAGG+AGG | - | chr2_1:13522310-13522329 | None:intergenic | 40.0% | |
| AGAAGAGAAAGCAAAGGAAC+AGG | + | chr2_1:13522349-13522368 | Msa0196340:CDS | 40.0% | |
| GTATAGGAGGATTCAACCAA+AGG | + | chr2_1:13522733-13522752 | Msa0196340:three_prime_UTR | 40.0% | |
| !! | CATGGAGGTTGCTTTGGAAA+TGG | + | chr2_1:13521859-13521878 | Msa0196340:exon | 45.0% |
| ! | TTTGCAGGTTGAGAAGCAAG+TGG | - | chr2_1:13521953-13521972 | None:intergenic | 45.0% |
| TCAACCTGCAAACTCTCTTC+AGG | + | chr2_1:13521961-13521980 | Msa0196340:CDS | 45.0% | |
| AGAACCTGAAGAGAGTTTGC+AGG | - | chr2_1:13521968-13521987 | None:intergenic | 45.0% | |
| !! | TTCTTGGCTGTGTTGCTTGT+GGG | - | chr2_1:13522384-13522403 | None:intergenic | 45.0% |
| CCTTTCTTGTACCTCCTTCT+TGG | - | chr2_1:13522400-13522419 | None:intergenic | 45.0% | |
| ! | CCAAGAAGGAGGTACAAGAA+AGG | + | chr2_1:13522397-13522416 | Msa0196340:CDS | 45.0% |
| AGTGGAGGTTGCAAAACCTT+TGG | - | chr2_1:13522752-13522771 | None:intergenic | 45.0% | |
| CAAAATGCTTGTCCACACAG+TGG | - | chr2_1:13522770-13522789 | None:intergenic | 45.0% | |
| ! | CTGTGTGGACAAGCATTTTG+TGG | + | chr2_1:13522770-13522789 | Msa0196340:three_prime_UTR | 45.0% |
| !! | CATGGAGGTTGCTTTGGAAA+TGG | + | chr2_1:13521859-13521878 | Msa0196340:exon | 45.0% |
| ! | TTTGCAGGTTGAGAAGCAAG+TGG | - | chr2_1:13521953-13521972 | None:intergenic | 45.0% |
| TCAACCTGCAAACTCTCTTC+AGG | + | chr2_1:13521961-13521980 | Msa0196340:CDS | 45.0% | |
| AGAACCTGAAGAGAGTTTGC+AGG | - | chr2_1:13521968-13521987 | None:intergenic | 45.0% | |
| !! | TTCTTGGCTGTGTTGCTTGT+GGG | - | chr2_1:13522384-13522403 | None:intergenic | 45.0% |
| CCTTTCTTGTACCTCCTTCT+TGG | - | chr2_1:13522400-13522419 | None:intergenic | 45.0% | |
| ! | CCAAGAAGGAGGTACAAGAA+AGG | + | chr2_1:13522397-13522416 | Msa0196340:CDS | 45.0% |
| AGTGGAGGTTGCAAAACCTT+TGG | - | chr2_1:13522752-13522771 | None:intergenic | 45.0% | |
| CAAAATGCTTGTCCACACAG+TGG | - | chr2_1:13522770-13522789 | None:intergenic | 45.0% | |
| ! | CTGTGTGGACAAGCATTTTG+TGG | + | chr2_1:13522770-13522789 | Msa0196340:three_prime_UTR | 45.0% |
| ATTTGTGCATGGCAGTTCGG+TGG | + | chr2_1:13522113-13522132 | Msa0196340:intron | 50.0% | |
| !! | CTTCTTGGCTGTGTTGCTTG+TGG | - | chr2_1:13522385-13522404 | None:intergenic | 50.0% |
| CACAAGCAACACAGCCAAGA+AGG | + | chr2_1:13522383-13522402 | Msa0196340:CDS | 50.0% | |
| AAGCAACACAGCCAAGAAGG+AGG | + | chr2_1:13522386-13522405 | Msa0196340:CDS | 50.0% | |
| ! | GTTTTGCAACCTCCACTGTG+TGG | + | chr2_1:13522755-13522774 | Msa0196340:three_prime_UTR | 50.0% |
| AATGCTTGTCCACACAGTGG+AGG | - | chr2_1:13522767-13522786 | None:intergenic | 50.0% | |
| ATTTGTGCATGGCAGTTCGG+TGG | + | chr2_1:13522113-13522132 | Msa0196340:intron | 50.0% | |
| !! | CTTCTTGGCTGTGTTGCTTG+TGG | - | chr2_1:13522385-13522404 | None:intergenic | 50.0% |
| CACAAGCAACACAGCCAAGA+AGG | + | chr2_1:13522383-13522402 | Msa0196340:CDS | 50.0% | |
| AAGCAACACAGCCAAGAAGG+AGG | + | chr2_1:13522386-13522405 | Msa0196340:CDS | 50.0% | |
| ! | GTTTTGCAACCTCCACTGTG+TGG | + | chr2_1:13522755-13522774 | Msa0196340:three_prime_UTR | 50.0% |
| AATGCTTGTCCACACAGTGG+AGG | - | chr2_1:13522767-13522786 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13521766 | 13522861 | 13521766 | ID=Msa0196340;Name=Msa0196340 |
| chr2_1 | mRNA | 13521766 | 13522861 | 13521766 | ID=Msa0196340-mRNA-1;Parent=Msa0196340;Name=Msa0196340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=94|1|1|1|1|1|2|351|115 |
| chr2_1 | exon | 13521766 | 13521982 | 13521766 | ID=Msa0196340-mRNA-1:exon:5822;Parent=Msa0196340-mRNA-1 |
| chr2_1 | exon | 13522286 | 13522861 | 13522286 | ID=Msa0196340-mRNA-1:exon:5823;Parent=Msa0196340-mRNA-1 |
| chr2_1 | five_prime_UTR | 13521766 | 13521859 | 13521766 | ID=Msa0196340-mRNA-1:five_prime_utr;Parent=Msa0196340-mRNA-1 |
| chr2_1 | CDS | 13521860 | 13521982 | 13521860 | ID=Msa0196340-mRNA-1:cds;Parent=Msa0196340-mRNA-1 |
| chr2_1 | CDS | 13522286 | 13522510 | 13522286 | ID=Msa0196340-mRNA-1:cds;Parent=Msa0196340-mRNA-1 |
| chr2_1 | three_prime_UTR | 13522511 | 13522861 | 13522511 | ID=Msa0196340-mRNA-1:three_prime_utr;Parent=Msa0196340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
