Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080590 | sp|Q10MI0|SRL2_ORYSJ | 47.721 | 1031 | 483 | 17 | 1 | 1022 | 1 | 984 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080590 | A0A072VN87 | 95.322 | 1026 | 17 | 2 | 1 | 1024 | 1 | 997 | 0.0 | 2012 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080590 | Msa1223490 | 0.802024 | 6.825073e-49 | -8.615850e-47 |
| Msa0080590 | Msa1463480 | 0.867878 | 9.892508e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080590 | MtrunA17_Chr1g0192801 | 95.322 | 1026 | 17 | 2 | 1 | 1024 | 1 | 997 | 0.0 | 2012 |
| Msa0080590 | MtrunA17_Chr4g0033461 | 33.052 | 1065 | 579 | 23 | 1 | 1024 | 1 | 972 | 1.02e-176 | 541 |
| Msa0080590 | MtrunA17_Chr2g0329341 | 33.365 | 1061 | 558 | 25 | 1 | 1024 | 1 | 949 | 4.72e-176 | 538 |
| Msa0080590 | MtrunA17_Chr7g0257661 | 33.114 | 1066 | 589 | 25 | 2 | 1024 | 6 | 990 | 2.27e-172 | 530 |
| Msa0080590 | MtrunA17_Chr4g0019461 | 32.520 | 1107 | 585 | 28 | 1 | 1024 | 1 | 1028 | 6.16e-172 | 530 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080590 | AT5G26850.4 | 51.787 | 1035 | 432 | 15 | 1 | 1023 | 1 | 980 | 0.0 | 1037 |
| Msa0080590 | AT5G26850.3 | 51.787 | 1035 | 432 | 15 | 1 | 1023 | 1 | 980 | 0.0 | 1037 |
| Msa0080590 | AT5G26850.1 | 51.787 | 1035 | 432 | 15 | 1 | 1023 | 1 | 980 | 0.0 | 1037 |
| Msa0080590 | AT5G26850.2 | 51.787 | 1035 | 432 | 15 | 1 | 1023 | 1 | 980 | 0.0 | 1037 |
| Msa0080590 | AT2G41830.1 | 32.156 | 1076 | 621 | 28 | 2 | 1024 | 6 | 1025 | 3.78e-162 | 505 |
| Msa0080590 | AT5G21080.1 | 32.657 | 1084 | 601 | 30 | 1 | 1021 | 1 | 1018 | 6.74e-159 | 496 |
| Msa0080590 | AT1G05960.1 | 32.015 | 1062 | 604 | 24 | 1 | 1024 | 1 | 982 | 2.60e-155 | 486 |
| Msa0080590 | AT1G05960.3 | 32.015 | 1062 | 604 | 24 | 1 | 1024 | 1 | 982 | 2.60e-155 | 486 |
| Msa0080590 | AT1G05960.4 | 32.015 | 1062 | 604 | 24 | 1 | 1024 | 1 | 982 | 2.60e-155 | 486 |
| Msa0080590 | AT1G05960.2 | 31.487 | 1083 | 603 | 25 | 1 | 1024 | 1 | 1003 | 4.38e-151 | 475 |
| Msa0080590 | AT2G41830.2 | 29.175 | 946 | 561 | 28 | 132 | 1024 | 1 | 890 | 2.33e-107 | 355 |
Find 247 sgRNAs with CRISPR-Local
Find 491 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACACGAACCGGGGATTT+TGG | 0.095953 | 1_2:+58864749 | None:intergenic |
| GCCAGCTTCTTTCTGCCTTT+TGG | 0.155395 | 1_2:-58860859 | Msa0080590:CDS |
| TCAGATTCACCATGAAAATT+TGG | 0.162194 | 1_2:+58862981 | None:intergenic |
| CACTCATAACATTGAGAAAT+TGG | 0.177257 | 1_2:-58863384 | Msa0080590:CDS |
| TATGGAATCTTGATCTGTTT+TGG | 0.198114 | 1_2:-58858054 | Msa0080590:three_prime_UTR |
| GACCTATAAATGATAATTAA+AGG | 0.216851 | 1_2:+58858169 | None:intergenic |
| CATATTTGAGCCCATATTTC+CGG | 0.235205 | 1_2:+58862558 | None:intergenic |
| GGACAGAGGCTCATCATAAT+TGG | 0.246862 | 1_2:-58862839 | Msa0080590:CDS |
| TATCAGCATTGGACAACTTA+TGG | 0.261951 | 1_2:-58859266 | Msa0080590:CDS |
| GTTGGGAATTGTGTAGAAAA+TGG | 0.270724 | 1_2:-58864891 | Msa0080590:exon |
| CAGTTTGTGGTATGCCTATA+TGG | 0.270981 | 1_2:-58858072 | Msa0080590:three_prime_UTR |
| TTCCATTGAGAATTGCTTAC+TGG | 0.278494 | 1_2:-58861916 | Msa0080590:CDS |
| GTCAATGGGGTTTGGTTACT+TGG | 0.285301 | 1_2:-58857989 | Msa0080590:three_prime_UTR |
| TGACTAGCCATAGCGTTATA+TGG | 0.286097 | 1_2:+58858904 | None:intergenic |
| AGTTGCATGAGAAGAGATTC+AGG | 0.288997 | 1_2:+58861388 | None:intergenic |
| GAGCTGAGTTTGTAAAAGTT+AGG | 0.289888 | 1_2:+58861055 | None:intergenic |
| AACCTTTAATTATCATTTAT+AGG | 0.291858 | 1_2:-58858171 | Msa0080590:three_prime_UTR |
| AAATTGAAAAGCCGGAAATA+TGG | 0.296411 | 1_2:-58862569 | Msa0080590:CDS |
| ATAATGTTGACATGGCTAAT+TGG | 0.306488 | 1_2:+58859800 | None:intergenic |
| TTCCAAGGATGAGGCTATTC+AGG | 0.309910 | 1_2:-58863634 | Msa0080590:CDS |
| CTCTCTGCGGTCTAGATATA+TGG | 0.311683 | 1_2:-58861263 | Msa0080590:CDS |
| ATATGGATCAGCGCAATAAA+AGG | 0.322507 | 1_2:-58861246 | Msa0080590:CDS |
| TCCAGCTTCCTCTGTCTCTC+TGG | 0.332100 | 1_2:-58860203 | Msa0080590:CDS |
| ATATTTGAAGGTAAGTTATC+AGG | 0.334594 | 1_2:+58860821 | None:intergenic |
| GCAGCCACTATTTGACTTGA+TGG | 0.335786 | 1_2:-58861779 | Msa0080590:CDS |
| AGTTAGTTTGGAAGAAGATC+TGG | 0.338768 | 1_2:+58865375 | None:intergenic |
| AGTGAAGAAGGTTGTCGTTC+AGG | 0.345113 | 1_2:+58865423 | None:intergenic |
| CAACACTGGGCTCCTCAAAA+TGG | 0.345616 | 1_2:-58862450 | Msa0080590:CDS |
| TGCTTACTGGAAATCGCTAA+TGG | 0.347104 | 1_2:-58861903 | Msa0080590:CDS |
| TATCTGAGTACTAACTGTTT+TGG | 0.347863 | 1_2:-58858013 | Msa0080590:three_prime_UTR |
| GTGTTTGCTGTCCTGCTTTG+AGG | 0.348843 | 1_2:-58864826 | Msa0080590:CDS |
| TCAAATATGCATTCAAAGAT+TGG | 0.351182 | 1_2:-58862544 | Msa0080590:CDS |
| CTATCTTTGTATTATCTGTT+GGG | 0.351742 | 1_2:-58860080 | Msa0080590:CDS |
| CACGGAAGAAGCTTTCAAAT+TGG | 0.352892 | 1_2:-58858858 | Msa0080590:CDS |
| ATGAATCAAAGCATTCATTA+TGG | 0.353775 | 1_2:+58859741 | None:intergenic |
| TAACCAGGTTGATCCGTTCT+TGG | 0.354177 | 1_2:-58859896 | Msa0080590:intron |
| AGGGAAGGATCCTTTACTTC+TGG | 0.359637 | 1_2:+58862729 | None:intergenic |
| TCACTTAGCTTCATAACATA+TGG | 0.363478 | 1_2:+58860893 | None:intergenic |
| ACATCTCCGGAAAAGTTTCC+AGG | 0.366842 | 1_2:-58861994 | Msa0080590:CDS |
| AAAGAAGTACAGAAAATATA+AGG | 0.370150 | 1_2:+58861317 | None:intergenic |
| CACAACTATGCGTCGTGTAT+TGG | 0.373040 | 1_2:-58862502 | Msa0080590:CDS |
| TCTAAGAACTATGTAAATCT+TGG | 0.379391 | 1_2:-58858145 | Msa0080590:three_prime_UTR |
| AGCTGAGTTTGTAAAAGTTA+GGG | 0.379411 | 1_2:+58861056 | None:intergenic |
| TGTATTATCTGTTGGGATGC+TGG | 0.380197 | 1_2:-58860073 | Msa0080590:CDS |
| GAAGCTAAGTGAAGATCAAA+TGG | 0.380515 | 1_2:-58860882 | Msa0080590:CDS |
| TTGGGAATTGTGTAGAAAAT+GGG | 0.383142 | 1_2:-58864890 | Msa0080590:exon |
| AACTCAGCTCAATCATTGAT+AGG | 0.385267 | 1_2:-58861042 | Msa0080590:CDS |
| GAAGTCCTACCAAGTTAGTT+TGG | 0.386301 | 1_2:+58865363 | None:intergenic |
| GCTTACTGGAAATCGCTAAT+GGG | 0.386680 | 1_2:-58861902 | Msa0080590:CDS |
| ACGATGTGAGCACATCATTC+AGG | 0.386855 | 1_2:+58860019 | None:intergenic |
| GTCTCTCTGGACTATGTTGT+TGG | 0.387587 | 1_2:-58860190 | Msa0080590:CDS |
| ATGGGGTTTGGTTACTTGGT+AGG | 0.390123 | 1_2:-58857985 | Msa0080590:three_prime_UTR |
| TTTCTTAACTAAACAGTTTG+TGG | 0.391254 | 1_2:-58858085 | Msa0080590:three_prime_UTR |
| GGAGGGGATACAGGCATCTT+TGG | 0.403737 | 1_2:+58859301 | None:intergenic |
| CAACAAATTCACTGGAGGCC+TGG | 0.407252 | 1_2:+58861976 | None:intergenic |
| ATCTTCACCTCCTGAATTTG+AGG | 0.409146 | 1_2:+58859369 | None:intergenic |
| TAAATAAATACCTGGTTAAG+AGG | 0.409724 | 1_2:+58862709 | None:intergenic |
| TAATGTAACTTCGGAGCTCT+TGG | 0.409971 | 1_2:-58863661 | Msa0080590:CDS |
| AGATGAACCTTGTTAGAGAT+TGG | 0.410559 | 1_2:+58863601 | None:intergenic |
| CCACTTTAGATAACTATGAT+TGG | 0.410939 | 1_2:-58862890 | Msa0080590:CDS |
| CCTTTACTTCTGGTCGTGGT+TGG | 0.415418 | 1_2:+58862739 | None:intergenic |
| TCTATCTTTGTATTATCTGT+TGG | 0.417855 | 1_2:-58860081 | Msa0080590:CDS |
| CAGGCCTCCAGTGAATTTGT+TGG | 0.419624 | 1_2:-58861975 | Msa0080590:CDS |
| CCTGATGAAGACTTTGTGTT+TGG | 0.420588 | 1_2:-58859555 | Msa0080590:CDS |
| CTGGGCTCCTCAAAATGGTT+TGG | 0.428933 | 1_2:-58862445 | Msa0080590:CDS |
| AAGGCCAGAGACGACTTATC+AGG | 0.429233 | 1_2:+58858805 | None:intergenic |
| AGCCTCTGTGATACATCATC+TGG | 0.429647 | 1_2:-58862144 | Msa0080590:CDS |
| TGAGGCTGCGGAGGGGATAC+AGG | 0.432057 | 1_2:+58859292 | None:intergenic |
| GCCTTGAGAAAATTATCAAA+TGG | 0.432068 | 1_2:+58858308 | None:intergenic |
| GAGAGGAAACTTCATGTGTA+TGG | 0.434340 | 1_2:+58861281 | None:intergenic |
| GGTAGACGGTTAGCAGAGAT+TGG | 0.436369 | 1_2:-58862038 | Msa0080590:CDS |
| AACCAGGTTGATCCGTTCTT+GGG | 0.438206 | 1_2:-58859895 | Msa0080590:intron |
| AGCCGGGCTGGTTCAGTTGT+TGG | 0.439952 | 1_2:-58862792 | Msa0080590:CDS |
| AGGTAAGTTATCAGGAAGAT+TGG | 0.440492 | 1_2:+58860829 | None:intergenic |
| CTTGGCAATGCTGCTACTTG+TGG | 0.441940 | 1_2:+58858359 | None:intergenic |
| AGCAATTCTCAATGGAACTT+TGG | 0.442262 | 1_2:+58861922 | None:intergenic |
| GCTATAGCTTCAATATTTGA+AGG | 0.445577 | 1_2:+58860809 | None:intergenic |
| GGTACCAATGCTGCAGATCA+TGG | 0.447898 | 1_2:-58861154 | Msa0080590:CDS |
| TTACATCTGCGTCTTACAAA+TGG | 0.448384 | 1_2:+58863866 | None:intergenic |
| TGGGGTTTGGTTACTTGGTA+GGG | 0.449119 | 1_2:-58857984 | Msa0080590:three_prime_UTR |
| ACGCATAGTTGTGCTTTCCT+TGG | 0.450738 | 1_2:+58862512 | None:intergenic |
| ACCCTAGAAAATATTCCATC+TGG | 0.453377 | 1_2:-58861751 | Msa0080590:CDS |
| GTTCAGGAATGGAGAGGGTG+GGG | 0.455284 | 1_2:+58865439 | None:intergenic |
| TCAATCATTGATAGGGCTAC+AGG | 0.458148 | 1_2:-58861034 | Msa0080590:CDS |
| AATTGAAAAGCCGGAAATAT+GGG | 0.458899 | 1_2:-58862568 | Msa0080590:CDS |
| ACACACATGCTCTCACAAGC+TGG | 0.465349 | 1_2:+58864845 | None:intergenic |
| CTAGCAGGAGGCAACTTCAT+GGG | 0.466240 | 1_2:+58858332 | None:intergenic |
| CAGCCTCATGTTATCAGCAT+TGG | 0.470689 | 1_2:-58859277 | Msa0080590:CDS |
| GGCAACTTCATGGGGTCCCT+TGG | 0.470965 | 1_2:+58858341 | None:intergenic |
| GCTAGCAGGAGGCAACTTCA+TGG | 0.471040 | 1_2:+58858331 | None:intergenic |
| GGGATACAGTCGCAGAAGAA+TGG | 0.471163 | 1_2:-58861105 | Msa0080590:CDS |
| TTATTCTCAAGAGTCGTTGT+CGG | 0.472995 | 1_2:-58859496 | Msa0080590:CDS |
| TTCCAGTAAGCAATTCTCAA+TGG | 0.475291 | 1_2:+58861914 | None:intergenic |
| AATATTCCATCTGGTGTTGT+TGG | 0.475831 | 1_2:-58861742 | Msa0080590:CDS |
| CCATGAAAACTGCTGTTTGA+GGG | 0.478275 | 1_2:-58863321 | Msa0080590:CDS |
| GTGACCTTTGCAGACATCTC+CGG | 0.479951 | 1_2:-58862007 | Msa0080590:CDS |
| GAAGAAGCTTTCAAATTGGT+TGG | 0.480041 | 1_2:-58858854 | Msa0080590:CDS |
| GACTAGCCATAGCGTTATAT+GGG | 0.480113 | 1_2:+58858905 | None:intergenic |
| AATACCTTTGGAATCCGAAA+AGG | 0.481562 | 1_2:+58864112 | None:intergenic |
| TCCAGAGAGACAGAGGAAGC+TGG | 0.483712 | 1_2:+58860202 | None:intergenic |
| TTGTTCATGATGACAAAGAA+AGG | 0.485769 | 1_2:-58861126 | Msa0080590:CDS |
| AAATTATCAAATGGGCTAGC+AGG | 0.485948 | 1_2:+58858317 | None:intergenic |
| CACCTGCTGCACACGTAAGT+TGG | 0.485976 | 1_2:+58861663 | None:intergenic |
| CAGTAACGCAGCACTTGAAA+AGG | 0.486168 | 1_2:-58858773 | Msa0080590:intron |
| TTAGCCATGCAGATTAGATC+AGG | 0.487063 | 1_2:-58862059 | Msa0080590:CDS |
| GACAGAGGCTCATCATAATT+GGG | 0.487979 | 1_2:-58862838 | Msa0080590:CDS |
| CCAATCATAGTTATCTAAAG+TGG | 0.491188 | 1_2:+58862890 | None:intergenic |
| CTAGTCAGTGTGAATCGCTT+GGG | 0.491508 | 1_2:-58858888 | Msa0080590:CDS |
| TGTTTGTCTACTTTGATACA+AGG | 0.491516 | 1_2:-58862473 | Msa0080590:CDS |
| ATCACCTGATAAGTCGTCTC+TGG | 0.492623 | 1_2:-58858809 | Msa0080590:CDS |
| TTGTTCTCCAACAAATTCAC+TGG | 0.494096 | 1_2:+58861968 | None:intergenic |
| TCTTCACCTCCTGAATTTGA+GGG | 0.495264 | 1_2:+58859370 | None:intergenic |
| TCCAAAAGGCAGAAAGAAGC+TGG | 0.495456 | 1_2:+58860858 | None:intergenic |
| ACTTTGATACAAGGCAACAC+TGG | 0.496348 | 1_2:-58862464 | Msa0080590:CDS |
| AAAGTGACGATGCTGACATC+AGG | 0.497408 | 1_2:-58862860 | Msa0080590:CDS |
| CTTGATCTTGACCTCAAAGC+AGG | 0.497671 | 1_2:+58864815 | None:intergenic |
| GGCCAACTTACGTGTGCAGC+AGG | 0.497828 | 1_2:-58861665 | Msa0080590:intron |
| TGCCTGAATAGCCTCATCCT+TGG | 0.498100 | 1_2:+58863632 | None:intergenic |
| CCAAACACAAAGTCTTCATC+AGG | 0.499803 | 1_2:+58859555 | None:intergenic |
| CCTTGAGAAAATTATCAAAT+GGG | 0.500207 | 1_2:+58858309 | None:intergenic |
| GTCCGTAGTGAAAGCCGGGC+TGG | 0.501507 | 1_2:-58862804 | Msa0080590:CDS |
| TAGAGAAGAAATTGAAAAGC+CGG | 0.502337 | 1_2:-58862577 | Msa0080590:CDS |
| AATGTGGATTTGAGAGAGTA+TGG | 0.504392 | 1_2:-58859838 | Msa0080590:CDS |
| CATTGGACAACTTATGGAAT+CGG | 0.507209 | 1_2:-58859260 | Msa0080590:intron |
| AATGAATTTCTAGGAATGGT+AGG | 0.508401 | 1_2:-58858201 | Msa0080590:three_prime_UTR |
| AACAAGGTTCATCTACTGTC+AGG | 0.509746 | 1_2:-58863592 | Msa0080590:intron |
| ATTCCCATGATCTGCAGCAT+TGG | 0.511420 | 1_2:+58861150 | None:intergenic |
| AGGTTGTCCGTAGTGAAAGC+CGG | 0.512182 | 1_2:-58862809 | Msa0080590:CDS |
| AGATAGACCTTTGATACGCA+GGG | 0.512398 | 1_2:+58860097 | None:intergenic |
| GGATCCTTTACTTCTGGTCG+TGG | 0.513079 | 1_2:+58862735 | None:intergenic |
| GATCTTCTTCCAAACTAACT+TGG | 0.515141 | 1_2:-58865372 | Msa0080590:intron |
| CTTGCAATGCCTTTCAGCAA+TGG | 0.516015 | 1_2:-58863291 | Msa0080590:intron |
| CCCATGAAAACTGCTGTTTG+AGG | 0.516446 | 1_2:-58863322 | Msa0080590:CDS |
| TCGAGCACTCACTTCTGCAT+TGG | 0.516674 | 1_2:-58861686 | Msa0080590:CDS |
| AAGATTGGCTTGAATCCAAA+AGG | 0.517677 | 1_2:+58860844 | None:intergenic |
| TCAAAATGGTTTGGCAATGG+TGG | 0.522026 | 1_2:-58862436 | Msa0080590:CDS |
| GCTAGTCAGTGTGAATCGCT+TGG | 0.525853 | 1_2:-58858889 | Msa0080590:CDS |
| AACAGATCAAGATTCCATAT+AGG | 0.527830 | 1_2:+58858058 | None:intergenic |
| TATCAGGTGATTGAGTGTAA+TGG | 0.527881 | 1_2:+58858821 | None:intergenic |
| ACAGACGTAGAGGCTCGTAT+TGG | 0.528380 | 1_2:-58861346 | Msa0080590:CDS |
| TCAAAGCATTCATTATGGTC+TGG | 0.528453 | 1_2:+58859746 | None:intergenic |
| TTCAGGAATGGAGAGGGTGG+GGG | 0.528721 | 1_2:+58865440 | None:intergenic |
| GTATGGTAGGTGAGTGAAGA+AGG | 0.529787 | 1_2:+58865411 | None:intergenic |
| TCTCTGACAGTAGCACAGTC+AGG | 0.530873 | 1_2:+58859586 | None:intergenic |
| CCTAAAAGACAAAGATAACC+TGG | 0.537904 | 1_2:-58860238 | Msa0080590:CDS |
| ATTCTTGTAGGAAGCATATG+AGG | 0.538567 | 1_2:-58858390 | Msa0080590:intron |
| TCGTTCAGGAATGGAGAGGG+TGG | 0.539530 | 1_2:+58865437 | None:intergenic |
| ACTACATAAGATTTAAGTTG+AGG | 0.539716 | 1_2:+58862098 | None:intergenic |
| TCATGTGTATGGAAGGAACT+TGG | 0.541459 | 1_2:+58861292 | None:intergenic |
| CACAAGTAGCAGCATTGCCA+AGG | 0.542802 | 1_2:-58858358 | Msa0080590:CDS |
| CGTTCAGGAATGGAGAGGGT+GGG | 0.544016 | 1_2:+58865438 | None:intergenic |
| AATCGCTTGGGACATGTTCA+CGG | 0.544060 | 1_2:-58858876 | Msa0080590:CDS |
| AAGATCTGGGAGTGAGTGAG+TGG | 0.545041 | 1_2:+58865389 | None:intergenic |
| TCATCATAATTGGGTGAATG+AGG | 0.546464 | 1_2:-58862829 | Msa0080590:CDS |
| GAAAGTATGCATGCTATCAC+AGG | 0.546637 | 1_2:-58863357 | Msa0080590:CDS |
| TGCGTTACTGTTACGAGCAA+AGG | 0.547088 | 1_2:+58858786 | None:intergenic |
| CTGATAACATGAGGCTGCGG+AGG | 0.547188 | 1_2:+58859283 | None:intergenic |
| GCTGGAAGAAGCGGATCACC+AGG | 0.548570 | 1_2:+58860220 | None:intergenic |
| CCACTGCTTGTAGGCACTGG+AGG | 0.548875 | 1_2:-58858971 | Msa0080590:intron |
| ACAGAGGAAGCTGGAAGAAG+CGG | 0.549164 | 1_2:+58860211 | None:intergenic |
| GTACCAATGCTGCAGATCAT+GGG | 0.551545 | 1_2:-58861153 | Msa0080590:CDS |
| TCCTCAAAATGGTTTGGCAA+TGG | 0.552323 | 1_2:-58862439 | Msa0080590:CDS |
| TGGATGTTAACTAGCTAGCT+AGG | 0.552791 | 1_2:-58858282 | Msa0080590:exon |
| AAGTAAAGCTGTAATTGAAG+CGG | 0.554940 | 1_2:+58861201 | None:intergenic |
| GCCTCTCCCATATAACGCTA+TGG | 0.557171 | 1_2:-58858911 | Msa0080590:CDS |
| GGTTGTCCGTAGTGAAAGCC+GGG | 0.558066 | 1_2:-58862808 | Msa0080590:CDS |
| AGGATGAGCTTCCAAATGAA+AGG | 0.558576 | 1_2:-58864171 | Msa0080590:CDS |
| AGAAGGTTGTCGTTCAGGAA+TGG | 0.559089 | 1_2:+58865428 | None:intergenic |
| CCAACCACGACCAGAAGTAA+AGG | 0.559542 | 1_2:-58862739 | Msa0080590:CDS |
| GTTAGTTTGGAAGAAGATCT+GGG | 0.559762 | 1_2:+58865376 | None:intergenic |
| AAGATTGGTTGAATTAGCCA+AGG | 0.561860 | 1_2:-58862529 | Msa0080590:CDS |
| CTTTGATACAAGGCAACACT+GGG | 0.562685 | 1_2:-58862463 | Msa0080590:CDS |
| ATTGCCATCAAGTCAAATAG+TGG | 0.564299 | 1_2:+58861775 | None:intergenic |
| TACCAACAACTGAACCAGCC+CGG | 0.566000 | 1_2:+58862790 | None:intergenic |
| GGAAACTTCATGTGTATGGA+AGG | 0.566576 | 1_2:+58861285 | None:intergenic |
| CACACATGCTCTCACAAGCT+GGG | 0.566639 | 1_2:+58864846 | None:intergenic |
| GGAGCTCTTGGACTATTCCA+AGG | 0.568212 | 1_2:-58863649 | Msa0080590:CDS |
| GCCATAGCGTTATATGGGAG+AGG | 0.568777 | 1_2:+58858910 | None:intergenic |
| AACCAGCCCGGCTTTCACTA+CGG | 0.569428 | 1_2:+58862802 | None:intergenic |
| TGTTCATGATGACAAAGAAA+GGG | 0.570353 | 1_2:-58861125 | Msa0080590:CDS |
| ACTCAGCTCAATCATTGATA+GGG | 0.570479 | 1_2:-58861041 | Msa0080590:CDS |
| AAGCTCCGCAGAGGCAGAGA+TGG | 0.571699 | 1_2:-58861175 | Msa0080590:CDS |
| AAATACCTGGTTAAGAGGGA+AGG | 0.574826 | 1_2:+58862714 | None:intergenic |
| AAGATAGACCTTTGATACGC+AGG | 0.576509 | 1_2:+58860096 | None:intergenic |
| CAACTCAGATAATGTTGACA+TGG | 0.576748 | 1_2:+58859792 | None:intergenic |
| CTTGGACTATTCCAAGGATG+AGG | 0.577851 | 1_2:-58863643 | Msa0080590:CDS |
| AGGATCCTTCCCTCTTAACC+AGG | 0.580463 | 1_2:-58862719 | Msa0080590:intron |
| AAATAAATACCTGGTTAAGA+GGG | 0.580806 | 1_2:+58862710 | None:intergenic |
| TGCATGCTATCACAGGAGCC+TGG | 0.581266 | 1_2:-58863350 | Msa0080590:CDS |
| AGAGTCGTTGTCGGTTGATG+AGG | 0.581281 | 1_2:-58859487 | Msa0080590:intron |
| GAGGTAGCAAGTCATGTGGC+AGG | 0.584697 | 1_2:-58858952 | Msa0080590:CDS |
| GATGAGGCTATTCAGGCACT+TGG | 0.586353 | 1_2:-58863627 | Msa0080590:CDS |
| GTATCAAAGTAGACAAACAT+TGG | 0.587883 | 1_2:+58862477 | None:intergenic |
| AAGCTAAGTGAAGATCAAAT+GGG | 0.589572 | 1_2:-58860881 | Msa0080590:CDS |
| CAGAAGTGAGTGCTCGAGCA+AGG | 0.590084 | 1_2:+58861692 | None:intergenic |
| TGAAAGGCATTGCAAGCTTG+AGG | 0.590364 | 1_2:+58863298 | None:intergenic |
| TTCTCCAACAAATTCACTGG+AGG | 0.591292 | 1_2:+58861971 | None:intergenic |
| TGATAACATGAGGCTGCGGA+GGG | 0.592325 | 1_2:+58859284 | None:intergenic |
| ACCCGTGTTCTCAATGAAGT+AGG | 0.592530 | 1_2:+58862398 | None:intergenic |
| AACATAGTCCAGAGAGACAG+AGG | 0.595054 | 1_2:+58860195 | None:intergenic |
| TGATGTGCTTAATGTAACTT+CGG | 0.595798 | 1_2:-58863670 | Msa0080590:CDS |
| TAGCAGGAGGCAACTTCATG+GGG | 0.596336 | 1_2:+58858333 | None:intergenic |
| GCTGAGTTTGTAAAAGTTAG+GGG | 0.596740 | 1_2:+58861057 | None:intergenic |
| GTTGTTGGAAGAGCAACCAT+TGG | 0.600825 | 1_2:-58861727 | Msa0080590:CDS |
| GGCCTACTTCATTGAGAACA+CGG | 0.601237 | 1_2:-58862400 | Msa0080590:CDS |
| AAGGACTATGAGTGATCCAA+TGG | 0.601682 | 1_2:+58861711 | None:intergenic |
| CTGGGAGTGAGTGAGTGGTA+TGG | 0.602112 | 1_2:+58865394 | None:intergenic |
| TCTTTGGAATGAATCGAGAA+AGG | 0.604792 | 1_2:+58859317 | None:intergenic |
| CACTAATTACCATTGCTGAA+AGG | 0.608576 | 1_2:+58863282 | None:intergenic |
| TGGGAATTGTGTAGAAAATG+GGG | 0.611214 | 1_2:-58864889 | Msa0080590:exon |
| AGTATATGCTAAGATGAATG+TGG | 0.613347 | 1_2:-58859854 | Msa0080590:CDS |
| GAAGAATGGAAACAAGGCTG+TGG | 0.614177 | 1_2:-58861091 | Msa0080590:CDS |
| TTGTAGGAAGCATATGAGGA+TGG | 0.615497 | 1_2:-58858386 | Msa0080590:intron |
| TGTCAACATTATCTGAGTTG+AGG | 0.616482 | 1_2:-58859789 | Msa0080590:CDS |
| CTTACTGGAAATCGCTAATG+GGG | 0.622795 | 1_2:-58861901 | Msa0080590:intron |
| GCTCTTCCAACAACACCAGA+TGG | 0.623254 | 1_2:+58861736 | None:intergenic |
| TTGGTTGCCAATCTCTAACA+AGG | 0.624650 | 1_2:-58863608 | Msa0080590:CDS |
| GAGTGAGTGAGTGGTATGGT+AGG | 0.629943 | 1_2:+58865398 | None:intergenic |
| TAACTTGACAAACTTTACTG+AGG | 0.631465 | 1_2:-58859719 | Msa0080590:intron |
| TTATCAAATGGGCTAGCAGG+AGG | 0.632238 | 1_2:+58858320 | None:intergenic |
| ATGCTGATAACATGAGGCTG+CGG | 0.639691 | 1_2:+58859280 | None:intergenic |
| TTGTCGTTCAGGAATGGAGA+GGG | 0.639996 | 1_2:+58865434 | None:intergenic |
| ATCTCAAAGTTTGACTGATG+TGG | 0.641021 | 1_2:-58861011 | Msa0080590:intron |
| TGCAGATTAGATCAGGTAGA+CGG | 0.649513 | 1_2:-58862052 | Msa0080590:CDS |
| TCTACCTGATCTAATCTGCA+TGG | 0.651480 | 1_2:+58862055 | None:intergenic |
| AATCTGCATGGCTAAAGATG+TGG | 0.656601 | 1_2:+58862067 | None:intergenic |
| GTCGCAGAAGAATGGAAACA+AGG | 0.656645 | 1_2:-58861097 | Msa0080590:CDS |
| ACAAGTAGCAGCATTGCCAA+GGG | 0.658384 | 1_2:-58858357 | Msa0080590:CDS |
| AATGATGCATACAGACGTAG+AGG | 0.658447 | 1_2:-58861356 | Msa0080590:CDS |
| GCCTACTTCATTGAGAACAC+GGG | 0.662101 | 1_2:-58862399 | Msa0080590:intron |
| TTACTTGAAAAGCTCCGCAG+AGG | 0.662208 | 1_2:-58861184 | Msa0080590:CDS |
| GTTATATGGGAGAGGCGAAG+TGG | 0.663525 | 1_2:+58858918 | None:intergenic |
| GGGAATTGTGTAGAAAATGG+GGG | 0.674893 | 1_2:-58864888 | Msa0080590:exon |
| GTTGTCGTTCAGGAATGGAG+AGG | 0.675926 | 1_2:+58865433 | None:intergenic |
| GATAACATGAGGCTGCGGAG+GGG | 0.679500 | 1_2:+58859285 | None:intergenic |
| CACATGAAGTTTCCTCTCTG+CGG | 0.680864 | 1_2:-58861276 | Msa0080590:CDS |
| TCATCACTGATACCCAAGAA+CGG | 0.684971 | 1_2:+58859883 | None:intergenic |
| TTGAGTGTAATGGTTCTCGA+AGG | 0.688196 | 1_2:+58858831 | None:intergenic |
| GATAGACCTTTGATACGCAG+GGG | 0.700458 | 1_2:+58860098 | None:intergenic |
| CGATGCTGACATCAGGACAG+AGG | 0.701480 | 1_2:-58862853 | Msa0080590:CDS |
| ACTGGAGGTAGCAAGTCATG+TGG | 0.701631 | 1_2:-58858956 | Msa0080590:CDS |
| TGGTACCATCTCTGCCTCTG+CGG | 0.705276 | 1_2:+58861170 | None:intergenic |
| TTCTGATCAAGAATTGACTG+TGG | 0.705291 | 1_2:+58859531 | None:intergenic |
| ATAGACCTTTGATACGCAGG+GGG | 0.716198 | 1_2:+58860099 | None:intergenic |
| CATATATCTAGACCGCAGAG+AGG | 0.728704 | 1_2:+58861264 | None:intergenic |
| TGTCCAATGCTGATAACATG+AGG | 0.744103 | 1_2:+58859274 | None:intergenic |
| GTCCAGATGATGTATCACAG+AGG | 0.790210 | 1_2:+58862142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGCAATAAAAAAAAAA+AGG | + | chr1_2:58858325-58858344 | None:intergenic | 10.0% |
| !! | AATTCTCAAAAAAAAAAAAA+GGG | - | chr1_2:58858958-58858977 | Msa0080590:CDS | 10.0% |
| !!! | TGAAAATAATTTGTAATAAT+TGG | + | chr1_2:58859119-58859138 | None:intergenic | 10.0% |
| !! | ATAAATAAAGACAATAATAA+GGG | + | chr1_2:58860867-58860886 | None:intergenic | 10.0% |
| !!! | TTATTAATTTTTTTTTTTGC+AGG | - | chr1_2:58861997-58862016 | Msa0080590:CDS | 10.0% |
| !! | AAAAAACAATAAAATTCAAT+AGG | - | chr1_2:58864433-58864452 | Msa0080590:intron | 10.0% |
| !!! | TTTTGTAGTTGAATATTTTT+TGG | - | chr1_2:58858510-58858529 | Msa0080590:intron | 15.0% |
| !! | AATTCAAACACATTAAAAAA+GGG | + | chr1_2:58858754-58858773 | None:intergenic | 15.0% |
| !! | AAATTCAAACACATTAAAAA+AGG | + | chr1_2:58858755-58858774 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTTTGAGAAT+TGG | + | chr1_2:58858959-58858978 | None:intergenic | 15.0% |
| !! | CAATTCTCAAAAAAAAAAAA+AGG | - | chr1_2:58858957-58858976 | Msa0080590:CDS | 15.0% |
| !!! | TCATTTTACCAAATTATATA+TGG | - | chr1_2:58859204-58859223 | Msa0080590:intron | 15.0% |
| !! | AATAAATGAATAAATACCTT+TGG | + | chr1_2:58859374-58859393 | None:intergenic | 15.0% |
| !!! | TTTAATTTTATTCAAAGAAG+AGG | - | chr1_2:58859416-58859435 | Msa0080590:intron | 15.0% |
| !! | GATAAATAAAGACAATAATA+AGG | + | chr1_2:58860868-58860887 | None:intergenic | 15.0% |
| !!! | ACTATATTTTGATATTGAAT+TGG | - | chr1_2:58862545-58862564 | Msa0080590:CDS | 15.0% |
| !!! | CTATATTTTGATATTGAATT+GGG | - | chr1_2:58862546-58862565 | Msa0080590:CDS | 15.0% |
| !!! | TTTGAAGATTCAATTTTATT+AGG | + | chr1_2:58862873-58862892 | None:intergenic | 15.0% |
| !! | TCAATAAAAATTGAATTTGA+AGG | + | chr1_2:58864057-58864076 | None:intergenic | 15.0% |
| !! | TAAAGAAAAAATAGAGTAAA+GGG | + | chr1_2:58864968-58864987 | None:intergenic | 15.0% |
| !! | TTTAGTAAAAATGAATTTCT+AGG | - | chr1_2:58865261-58865280 | Msa0080590:intron | 15.0% |
| !! | AACCTTTAATTATCATTTAT+AGG | - | chr1_2:58865300-58865319 | Msa0080590:intron | 15.0% |
| !!! | GTTATTTTACAAATATTACA+AGG | + | chr1_2:58865360-58865379 | None:intergenic | 15.0% |
| !! | AAAAAAACAGAAAGAAAGAA+AGG | + | chr1_2:58858146-58858165 | None:intergenic | 20.0% |
| !!! | AGTATTATTTATCACTGTTT+TGG | - | chr1_2:58858183-58858202 | Msa0080590:three_prime_UTR | 20.0% |
| !! | TAGTATAAAAATCTCCAAAA+GGG | + | chr1_2:58858215-58858234 | None:intergenic | 20.0% |
| !! | AACAAATATAAAATGCAACT+AGG | + | chr1_2:58858477-58858496 | None:intergenic | 20.0% |
| !!! | TAGTTGAATATTTTTTGGTT+GGG | - | chr1_2:58858515-58858534 | Msa0080590:intron | 20.0% |
| !! | ATGTGTTTGAATTTGAAAAT+AGG | - | chr1_2:58858761-58858780 | Msa0080590:intron | 20.0% |
| !!! | CTAACATTTTGTTTTTCTAT+TGG | + | chr1_2:58858878-58858897 | None:intergenic | 20.0% |
| !! | TAGAAAAACAAAATGTTAGT+AGG | - | chr1_2:58858879-58858898 | Msa0080590:CDS | 20.0% |
| !! | AGTACAAAATAACTTTATGT+TGG | + | chr1_2:58859727-58859746 | None:intergenic | 20.0% |
| !!! | TTTATTTCACTACCTTTTTT+TGG | - | chr1_2:58860306-58860325 | Msa0080590:intron | 20.0% |
| !!! | TAGATTTTTCCAAATTTTCA+TGG | - | chr1_2:58860481-58860500 | Msa0080590:intron | 20.0% |
| !! | TGAATATTAATTACCATACA+TGG | - | chr1_2:58861216-58861235 | Msa0080590:CDS | 20.0% |
| !!! | ATTTTTTTTTTTGCAGGTAA+TGG | - | chr1_2:58862003-58862022 | Msa0080590:CDS | 20.0% |
| !!! | AAAGAAGTACAGAAAATATA+AGG | + | chr1_2:58862157-58862176 | None:intergenic | 20.0% |
| !! | GTTATGAAGAAAAAAAAAAG+TGG | + | chr1_2:58863800-58863819 | None:intergenic | 20.0% |
| !!! | TTGATCATTTTTTGTTTTTC+AGG | - | chr1_2:58864073-58864092 | Msa0080590:intron | 20.0% |
| !! | GTAAAGAAAAAATAGAGTAA+AGG | + | chr1_2:58864969-58864988 | None:intergenic | 20.0% |
| !! | TTGATATCATACTACTAAAT+GGG | + | chr1_2:58864994-58865013 | None:intergenic | 20.0% |
| !! | TATAAAATGCCTGAAATAAT+TGG | + | chr1_2:58865049-58865068 | None:intergenic | 20.0% |
| !!! | TAAAAATGAATTTCTAGGAA+TGG | - | chr1_2:58865266-58865285 | Msa0080590:intron | 20.0% |
| !! | GACCTATAAATGATAATTAA+AGG | + | chr1_2:58865305-58865324 | None:intergenic | 20.0% |
| ! | GTAGTATAAAAATCTCCAAA+AGG | + | chr1_2:58858216-58858235 | None:intergenic | 25.0% |
| !!! | TTGCTTTATTTATTCCTTTC+TGG | - | chr1_2:58858285-58858304 | Msa0080590:exon | 25.0% |
| ! | TACTACATAAGTTACAAACA+TGG | + | chr1_2:58858372-58858391 | None:intergenic | 25.0% |
| ! | TAACAGGTAAAATGCAAAAT+AGG | + | chr1_2:58858430-58858449 | None:intergenic | 25.0% |
| ! | ATATAAAATGCAACTAGGAT+AGG | + | chr1_2:58858472-58858491 | None:intergenic | 25.0% |
| !!! | GTAGTTGAATATTTTTTGGT+TGG | - | chr1_2:58858514-58858533 | Msa0080590:intron | 25.0% |
| !! | GTTTGAAGTTTGAACTAATT+TGG | - | chr1_2:58858537-58858556 | Msa0080590:intron | 25.0% |
| !! | GTTTTTCTATTGGATCATAA+TGG | + | chr1_2:58858868-58858887 | None:intergenic | 25.0% |
| ! | AATTTGTAATAATTGGCAAG+AGG | + | chr1_2:58859112-58859131 | None:intergenic | 25.0% |
| ! | AGATATGGCCATATATAATT+TGG | + | chr1_2:58859215-58859234 | None:intergenic | 25.0% |
| ! | AATGGTAAAGCAAAAAGATA+TGG | + | chr1_2:58859230-58859249 | None:intergenic | 25.0% |
| ! | ATTGTATAACATGAATACCA+GGG | + | chr1_2:58859273-58859292 | None:intergenic | 25.0% |
| ! | TATTGTATAACATGAATACC+AGG | + | chr1_2:58859274-58859293 | None:intergenic | 25.0% |
| !! | TTGACAATTTTCCTTTCATT+TGG | + | chr1_2:58859314-58859333 | None:intergenic | 25.0% |
| ! | TCATTTATTTCAGTCATGTA+TGG | - | chr1_2:58859385-58859404 | Msa0080590:intron | 25.0% |
| ! | CATTTATTTCAGTCATGTAT+GGG | - | chr1_2:58859386-58859405 | Msa0080590:intron | 25.0% |
| !! | AATTTTATTCAAAGAAGAGG+AGG | - | chr1_2:58859419-58859438 | Msa0080590:intron | 25.0% |
| ! | AGAAATAGTGAACTTAGAAT+TGG | + | chr1_2:58859474-58859493 | None:intergenic | 25.0% |
| ! | TATATTGCTCTTTGCTTATT+TGG | - | chr1_2:58859922-58859941 | Msa0080590:intron | 25.0% |
| ! | AAGGTAGTGAAATAAACATT+GGG | + | chr1_2:58860302-58860321 | None:intergenic | 25.0% |
| ! | AAAGGTAGTGAAATAAACAT+TGG | + | chr1_2:58860303-58860322 | None:intergenic | 25.0% |
| ! | AAATAAATACCTGGTTAAGA+GGG | + | chr1_2:58860764-58860783 | None:intergenic | 25.0% |
| ! | TAAATAAATACCTGGTTAAG+AGG | + | chr1_2:58860765-58860784 | None:intergenic | 25.0% |
| ! | TCAAATATGCATTCAAAGAT+TGG | - | chr1_2:58860927-58860946 | Msa0080590:intron | 25.0% |
| ! | TAAATTCCATACAGTTATGA+AGG | + | chr1_2:58861172-58861191 | None:intergenic | 25.0% |
| ! | TTCATAACTGTATGGAATTT+AGG | - | chr1_2:58861171-58861190 | Msa0080590:CDS | 25.0% |
| !! | TTTTACAGAAAAACCATGTA+TGG | + | chr1_2:58861232-58861251 | None:intergenic | 25.0% |
| ! | CAGAAAAAGGTAAAGATTAA+GGG | + | chr1_2:58861285-58861304 | None:intergenic | 25.0% |
| !! | GATCATTCATAACATTTTTG+TGG | + | chr1_2:58861354-58861373 | None:intergenic | 25.0% |
| !!! | ACTACATAAGATTTAAGTTG+AGG | + | chr1_2:58861376-58861395 | None:intergenic | 25.0% |
| !!! | AACTACTGTTTTTTCTTTGT+TGG | - | chr1_2:58861650-58861669 | Msa0080590:intron | 25.0% |
| !!! | ATTTTTAAGAGAATGTGTCT+TGG | + | chr1_2:58861949-58861968 | None:intergenic | 25.0% |
| ! | ATATTTGAAGGTAAGTTATC+AGG | + | chr1_2:58862653-58862672 | None:intergenic | 25.0% |
| ! | AAAAATAGACTAAGCAGTAA+AGG | + | chr1_2:58862789-58862808 | None:intergenic | 25.0% |
| ! | ATTATATTCACATTGACCTA+CGG | - | chr1_2:58863059-58863078 | Msa0080590:intron | 25.0% |
| ! | TGTATGATGCTTGTAAATAT+TGG | - | chr1_2:58863099-58863118 | Msa0080590:intron | 25.0% |
| ! | TTTGATACAATCCATTACTT+GGG | + | chr1_2:58863308-58863327 | None:intergenic | 25.0% |
| !! | TTTTGATACAATCCATTACT+TGG | + | chr1_2:58863309-58863328 | None:intergenic | 25.0% |
| ! | TCTATCTTTGTATTATCTGT+TGG | - | chr1_2:58863390-58863409 | Msa0080590:CDS | 25.0% |
| ! | CTATCTTTGTATTATCTGTT+GGG | - | chr1_2:58863391-58863410 | Msa0080590:CDS | 25.0% |
| !! | ATGAATCTGATATATTTTGC+AGG | + | chr1_2:58863430-58863449 | None:intergenic | 25.0% |
| !! | ATGAATCAAAGCATTCATTA+TGG | + | chr1_2:58863733-58863752 | None:intergenic | 25.0% |
| !!! | ACGATGTTTATGTTATTTTG+AGG | - | chr1_2:58864025-58864044 | Msa0080590:intron | 25.0% |
| ! | AGATAATACGATTCAAAGAT+TGG | + | chr1_2:58864349-58864368 | None:intergenic | 25.0% |
| !! | TTTTGCGTAAATAGTCATTT+TGG | - | chr1_2:58864751-58864770 | Msa0080590:intron | 25.0% |
| !!! | TTGTAATTTTGATGCATTCA+AGG | + | chr1_2:58864807-58864826 | None:intergenic | 25.0% |
| ! | TTAGTCCATCAAATTACTAA+CGG | + | chr1_2:58864851-58864870 | None:intergenic | 25.0% |
| ! | GTTGATATCATACTACTAAA+TGG | + | chr1_2:58864995-58865014 | None:intergenic | 25.0% |
| ! | AGTAGTATGATATCAACTTA+TGG | - | chr1_2:58864998-58865017 | Msa0080590:intron | 25.0% |
| ! | GTTATGATTCCAATTATTTC+AGG | - | chr1_2:58865037-58865056 | Msa0080590:intron | 25.0% |
| ! | TATGTCTTTCATATTCTTGT+AGG | - | chr1_2:58865069-58865088 | Msa0080590:intron | 25.0% |
| ! | CCTTGAGAAAATTATCAAAT+GGG | + | chr1_2:58865165-58865184 | None:intergenic | 25.0% |
| ! | TCTAAGAACTATGTAAATCT+TGG | - | chr1_2:58865326-58865345 | Msa0080590:intron | 25.0% |
| ! | TTTCTTAACTAAACAGTTTG+TGG | - | chr1_2:58865386-58865405 | Msa0080590:five_prime_UTR | 25.0% |
| AACACTTCTCAGTTTCAATT+TGG | - | chr1_2:58858399-58858418 | Msa0080590:intron | 30.0% | |
| TAACGAACATACTCAATAAC+AGG | + | chr1_2:58858446-58858465 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTGTTCTCTCAGT+TGG | - | chr1_2:58858562-58858581 | Msa0080590:intron | 30.0% |
| !!! | CATTTTTTGTTCTCTCAGTT+GGG | - | chr1_2:58858563-58858582 | Msa0080590:intron | 30.0% |
| TTGGGAATTGTGTAGAAAAT+GGG | - | chr1_2:58858581-58858600 | Msa0080590:intron | 30.0% | |
| !!! | GGATCATAATGGTTTTGAAA+AGG | + | chr1_2:58858857-58858876 | None:intergenic | 30.0% |
| AAAAAAAAAAAAGGGCAACC+CGG | - | chr1_2:58858966-58858985 | Msa0080590:intron | 30.0% | |
| ATTGGTTAGAATGACAATAC+AGG | + | chr1_2:58859164-58859183 | None:intergenic | 30.0% | |
| CATGTTATACAATACTTCTC+AGG | - | chr1_2:58859280-58859299 | Msa0080590:CDS | 30.0% | |
| AAATAGGATGTGCTTGAATT+AGG | - | chr1_2:58859443-58859462 | Msa0080590:intron | 30.0% | |
| TGATGTGCTTAATGTAACTT+CGG | - | chr1_2:58859801-58859820 | Msa0080590:CDS | 30.0% | |
| CTATTAGATCGATGTATACT+TGG | - | chr1_2:58859964-58859983 | Msa0080590:intron | 30.0% | |
| CACTCATAACATTGAGAAAT+TGG | - | chr1_2:58860087-58860106 | Msa0080590:CDS | 30.0% | |
| ! | TTCTGATTTTGCATGTTTTC+TGG | - | chr1_2:58860239-58860258 | Msa0080590:CDS | 30.0% |
| !!! | CATTTTTGCTGATTTTGATG+AGG | - | chr1_2:58860358-58860377 | Msa0080590:intron | 30.0% |
| GAGTCAGAATGATTTATATG+AGG | + | chr1_2:58860401-58860420 | None:intergenic | 30.0% | |
| CTATCAATCAAAGAAACACA+CGG | + | chr1_2:58860464-58860483 | None:intergenic | 30.0% | |
| TCAGATTCACCATGAAAATT+TGG | + | chr1_2:58860493-58860512 | None:intergenic | 30.0% | |
| CCAATCATAGTTATCTAAAG+TGG | + | chr1_2:58860584-58860603 | None:intergenic | 30.0% | |
| CCACTTTAGATAACTATGAT+TGG | - | chr1_2:58860581-58860600 | Msa0080590:intron | 30.0% | |
| CTCTTGAGTAAATAAATACC+TGG | + | chr1_2:58860773-58860792 | None:intergenic | 30.0% | |
| GCTAAAAAAGGCCTATTAAT+CGG | + | chr1_2:58860796-58860815 | None:intergenic | 30.0% | |
| TAGAGAAGAAATTGAAAAGC+CGG | - | chr1_2:58860894-58860913 | Msa0080590:CDS | 30.0% | |
| AAATTGAAAAGCCGGAAATA+TGG | - | chr1_2:58860902-58860921 | Msa0080590:intron | 30.0% | |
| AATTGAAAAGCCGGAAATAT+GGG | - | chr1_2:58860903-58860922 | Msa0080590:intron | 30.0% | |
| GTATCAAAGTAGACAAACAT+TGG | + | chr1_2:58860997-58861016 | None:intergenic | 30.0% | |
| TGTTTGTCTACTTTGATACA+AGG | - | chr1_2:58860998-58861017 | Msa0080590:intron | 30.0% | |
| GCAATTTATGCAAAAGTAGT+GGG | + | chr1_2:58861107-58861126 | None:intergenic | 30.0% | |
| AGCAATTTATGCAAAAGTAG+TGG | + | chr1_2:58861108-58861127 | None:intergenic | 30.0% | |
| ACAGTTATGAAGGTAAAACA+CGG | + | chr1_2:58861162-58861181 | None:intergenic | 30.0% | |
| ! | GTTTTACCTTCATAACTGTA+TGG | - | chr1_2:58861163-58861182 | Msa0080590:CDS | 30.0% |
| ATCATGCAGAAAAAAATGGA+AGG | + | chr1_2:58861255-58861274 | None:intergenic | 30.0% | |
| !!! | TTCCATTTTTTTCTGCATGA+TGG | - | chr1_2:58861254-58861273 | Msa0080590:CDS | 30.0% |
| TACCATCATGCAGAAAAAAA+TGG | + | chr1_2:58861259-58861278 | None:intergenic | 30.0% | |
| GCAGAAAAAGGTAAAGATTA+AGG | + | chr1_2:58861286-58861305 | None:intergenic | 30.0% | |
| ! | TAATCTTTACCTTTTTCTGC+AGG | - | chr1_2:58861286-58861305 | Msa0080590:CDS | 30.0% |
| ! | AATCTTTACCTTTTTCTGCA+GGG | - | chr1_2:58861287-58861306 | Msa0080590:CDS | 30.0% |
| !! | TTTTTCTTTGTTGGTTGACT+AGG | - | chr1_2:58861659-58861678 | Msa0080590:intron | 30.0% |
| ! | ACCAGATGGAATATTTTCTA+GGG | + | chr1_2:58861724-58861743 | None:intergenic | 30.0% |
| !! | TATTTTGTTTGTTTGCCTCT+AGG | - | chr1_2:58862055-58862074 | Msa0080590:CDS | 30.0% |
| !! | ATTTTGTTTGTTTGCCTCTA+GGG | - | chr1_2:58862056-58862075 | Msa0080590:CDS | 30.0% |
| AAGTAAAGCTGTAATTGAAG+CGG | + | chr1_2:58862273-58862292 | None:intergenic | 30.0% | |
| TTGTTCATGATGACAAAGAA+AGG | - | chr1_2:58862345-58862364 | Msa0080590:intron | 30.0% | |
| TGTTCATGATGACAAAGAAA+GGG | - | chr1_2:58862346-58862365 | Msa0080590:intron | 30.0% | |
| AGCTGAGTTTGTAAAAGTTA+GGG | + | chr1_2:58862418-58862437 | None:intergenic | 30.0% | |
| TTGATATTGAATTGGGTTTC+AGG | - | chr1_2:58862553-58862572 | Msa0080590:CDS | 30.0% | |
| TCACTTAGCTTCATAACATA+TGG | + | chr1_2:58862581-58862600 | None:intergenic | 30.0% | |
| AAGCTAAGTGAAGATCAAAT+GGG | - | chr1_2:58862590-58862609 | Msa0080590:intron | 30.0% | |
| GCTATAGCTTCAATATTTGA+AGG | + | chr1_2:58862665-58862684 | None:intergenic | 30.0% | |
| !! | GCTAATTGTTTTACGCATAA+AGG | - | chr1_2:58862703-58862722 | Msa0080590:intron | 30.0% |
| CATACATGAGTTACAAGTTA+CGG | + | chr1_2:58863085-58863104 | None:intergenic | 30.0% | |
| ATGATGCTTGTAAATATTGG+AGG | - | chr1_2:58863102-58863121 | Msa0080590:intron | 30.0% | |
| GATTACAGAGAGAACAAAAA+GGG | + | chr1_2:58863170-58863189 | None:intergenic | 30.0% | |
| TGATTACAGAGAGAACAAAA+AGG | + | chr1_2:58863171-58863190 | None:intergenic | 30.0% | |
| AAATTGATATACTCTTCCTC+TGG | - | chr1_2:58863338-58863357 | Msa0080590:CDS | 30.0% | |
| AGTATATGCTAAGATGAATG+TGG | - | chr1_2:58863617-58863636 | Msa0080590:CDS | 30.0% | |
| ATAATGTTGACATGGCTAAT+TGG | + | chr1_2:58863674-58863693 | None:intergenic | 30.0% | |
| TAACTTGACAAACTTTACTG+AGG | - | chr1_2:58863752-58863771 | Msa0080590:intron | 30.0% | |
| AAGAAAAACCAAGAATGTCA+GGG | + | chr1_2:58863831-58863850 | None:intergenic | 30.0% | |
| !! | ACATTCTTGGTTTTTCTTCT+TGG | - | chr1_2:58863833-58863852 | Msa0080590:intron | 30.0% |
| !! | TTGGTTTTCTTTTTCTTAGC+TGG | - | chr1_2:58863852-58863871 | Msa0080590:intron | 30.0% |
| ! | TGAAAAAGCATATAGCTCAA+CGG | - | chr1_2:58864472-58864491 | Msa0080590:intron | 30.0% |
| ATCTTCCGTTAGTAATTTGA+TGG | - | chr1_2:58864843-58864862 | Msa0080590:CDS | 30.0% | |
| !! | CCCATTTGATAATTTTCTCA+AGG | - | chr1_2:58865162-58865181 | Msa0080590:intron | 30.0% |
| GCCTTGAGAAAATTATCAAA+TGG | + | chr1_2:58865166-58865185 | None:intergenic | 30.0% | |
| ! | AATGAATTTCTAGGAATGGT+AGG | - | chr1_2:58865270-58865289 | Msa0080590:intron | 30.0% |
| AACAGATCAAGATTCCATAT+AGG | + | chr1_2:58865416-58865435 | None:intergenic | 30.0% | |
| ! | TATGGAATCTTGATCTGTTT+TGG | - | chr1_2:58865417-58865436 | Msa0080590:five_prime_UTR | 30.0% |
| ! | ATGGAATCTTGATCTGTTTT+GGG | - | chr1_2:58865418-58865437 | Msa0080590:five_prime_UTR | 30.0% |
| ! | TATCTGAGTACTAACTGTTT+TGG | - | chr1_2:58865458-58865477 | Msa0080590:five_prime_UTR | 30.0% |
| ! | GTTAGTTTGGAAGAAGATCT+GGG | + | chr1_2:58858098-58858117 | None:intergenic | 35.0% |
| ! | AGTTAGTTTGGAAGAAGATC+TGG | + | chr1_2:58858099-58858118 | None:intergenic | 35.0% |
| GATCTTCTTCCAAACTAACT+TGG | - | chr1_2:58858099-58858118 | Msa0080590:three_prime_UTR | 35.0% | |
| TTCTTCCAAACTAACTTGGT+AGG | - | chr1_2:58858103-58858122 | Msa0080590:three_prime_UTR | 35.0% | |
| !! | TTTATTCCTTTCTGGTTCGA+CGG | - | chr1_2:58858293-58858312 | Msa0080590:exon | 35.0% |
| CAGGTAAAATGCAAAATAGG+AGG | + | chr1_2:58858427-58858446 | None:intergenic | 35.0% | |
| GTTGGGAATTGTGTAGAAAA+TGG | - | chr1_2:58858580-58858599 | Msa0080590:intron | 35.0% | |
| TGGGAATTGTGTAGAAAATG+GGG | - | chr1_2:58858582-58858601 | Msa0080590:intron | 35.0% | |
| ! | AGTTTTCTGTAACGTTTGAC+TGG | + | chr1_2:58858686-58858705 | None:intergenic | 35.0% |
| ! | TGATATTTTCCCAAAATCCC+CGG | - | chr1_2:58858712-58858731 | Msa0080590:intron | 35.0% |
| !! | TATATTTTTGTACCCCTTCC+CGG | + | chr1_2:58859020-58859039 | None:intergenic | 35.0% |
| ! | AAGCTTGTTCTTCACTGATA+CGG | - | chr1_2:58859048-58859067 | Msa0080590:intron | 35.0% |
| !! | TTACCATTGACTTGTTCATG+AGG | - | chr1_2:58859242-58859261 | Msa0080590:intron | 35.0% |
| ! | ATGCAGCCAAAAATCCTTTT+CGG | - | chr1_2:58859345-58859364 | Msa0080590:CDS | 35.0% |
| ! | TGGAATCCGAAAAGGATTTT+TGG | + | chr1_2:58859354-58859373 | None:intergenic | 35.0% |
| ! | AAATCCTTTTCGGATTCCAA+AGG | - | chr1_2:58859355-58859374 | Msa0080590:CDS | 35.0% |
| !! | AATACCTTTGGAATCCGAAA+AGG | + | chr1_2:58859362-58859381 | None:intergenic | 35.0% |
| TCAAAGAAGAGGAGGAAAAT+AGG | - | chr1_2:58859427-58859446 | Msa0080590:intron | 35.0% | |
| TTACATCTGCGTCTTACAAA+TGG | + | chr1_2:58859608-58859627 | None:intergenic | 35.0% | |
| AGATGAACCTTGTTAGAGAT+TGG | + | chr1_2:58859873-58859892 | None:intergenic | 35.0% | |
| TACTTACACAATGAATGTGC+AGG | - | chr1_2:58860051-58860070 | Msa0080590:CDS | 35.0% | |
| CACTAATTACCATTGCTGAA+AGG | + | chr1_2:58860192-58860211 | None:intergenic | 35.0% | |
| !!! | TTTCACTACCTTTTTTTGGC+AGG | - | chr1_2:58860310-58860329 | Msa0080590:intron | 35.0% |
| ATGGCAGTTTCAAAATGGTT+GGG | + | chr1_2:58860437-58860456 | None:intergenic | 35.0% | |
| AATGGCAGTTTCAAAATGGT+TGG | + | chr1_2:58860438-58860457 | None:intergenic | 35.0% | |
| GCATAATGGCAGTTTCAAAA+TGG | + | chr1_2:58860442-58860461 | None:intergenic | 35.0% | |
| TCATCATAATTGGGTGAATG+AGG | - | chr1_2:58860642-58860661 | Msa0080590:intron | 35.0% | |
| TTACTCAAGAGCCGATTAAT+AGG | - | chr1_2:58860782-58860801 | Msa0080590:CDS | 35.0% | |
| CATATTTGAGCCCATATTTC+CGG | + | chr1_2:58860916-58860935 | None:intergenic | 35.0% | |
| ! | AAGATTGGTTGAATTAGCCA+AGG | - | chr1_2:58860942-58860961 | Msa0080590:intron | 35.0% |
| TTGCATAAATTGCTTTGCAG+CGG | - | chr1_2:58861114-58861133 | Msa0080590:CDS | 35.0% | |
| !!! | TTAGCAGAGATTGGTTTTGT+TGG | - | chr1_2:58861442-58861461 | Msa0080590:intron | 35.0% |
| TTGTTCTCCAACAAATTCAC+TGG | + | chr1_2:58861506-58861525 | None:intergenic | 35.0% | |
| AGCAATTCTCAATGGAACTT+TGG | + | chr1_2:58861552-58861571 | None:intergenic | 35.0% | |
| TTCCATTGAGAATTGCTTAC+TGG | - | chr1_2:58861555-58861574 | Msa0080590:intron | 35.0% | |
| TTCCAGTAAGCAATTCTCAA+TGG | + | chr1_2:58861560-58861579 | None:intergenic | 35.0% | |
| ATTGCCATCAAGTCAAATAG+TGG | + | chr1_2:58861699-58861718 | None:intergenic | 35.0% | |
| ACCCTAGAAAATATTCCATC+TGG | - | chr1_2:58861720-58861739 | Msa0080590:CDS | 35.0% | |
| ! | CACCAGATGGAATATTTTCT+AGG | + | chr1_2:58861725-58861744 | None:intergenic | 35.0% |
| !! | AATATTCCATCTGGTGTTGT+TGG | - | chr1_2:58861729-58861748 | Msa0080590:CDS | 35.0% |
| GACACAGCTACTAAAATGTT+TGG | + | chr1_2:58861886-58861905 | None:intergenic | 35.0% | |
| AGCTGTGTCAATAATATCTG+AGG | - | chr1_2:58861897-58861916 | Msa0080590:intron | 35.0% | |
| TTTAAGAGAATGTGTCTTGG+TGG | + | chr1_2:58861946-58861965 | None:intergenic | 35.0% | |
| ATATGGATCAGCGCAATAAA+AGG | - | chr1_2:58862225-58862244 | Msa0080590:intron | 35.0% | |
| GCTGAGTTTGTAAAAGTTAG+GGG | + | chr1_2:58862417-58862436 | None:intergenic | 35.0% | |
| GAGCTGAGTTTGTAAAAGTT+AGG | + | chr1_2:58862419-58862438 | None:intergenic | 35.0% | |
| AACTCAGCTCAATCATTGAT+AGG | - | chr1_2:58862429-58862448 | Msa0080590:CDS | 35.0% | |
| ACTCAGCTCAATCATTGATA+GGG | - | chr1_2:58862430-58862449 | Msa0080590:CDS | 35.0% | |
| ATCTCAAAGTTTGACTGATG+TGG | - | chr1_2:58862460-58862479 | Msa0080590:CDS | 35.0% | |
| GAAGCTAAGTGAAGATCAAA+TGG | - | chr1_2:58862589-58862608 | Msa0080590:intron | 35.0% | |
| !! | AAGATTGGCTTGAATCCAAA+AGG | + | chr1_2:58862630-58862649 | None:intergenic | 35.0% |
| AGGTAAGTTATCAGGAAGAT+TGG | + | chr1_2:58862645-58862664 | None:intergenic | 35.0% | |
| !!! | GCATAAAGGTAGTTTTGTCT+GGG | - | chr1_2:58862717-58862736 | Msa0080590:intron | 35.0% |
| TTTCTGAATTGAATTCTGCG+TGG | - | chr1_2:58862925-58862944 | Msa0080590:CDS | 35.0% | |
| ACATTGTATTCTCTTCACGT+TGG | - | chr1_2:58863014-58863033 | Msa0080590:intron | 35.0% | |
| ! | TATTGGAGGCTCATTTTCAT+AGG | - | chr1_2:58863116-58863135 | Msa0080590:CDS | 35.0% |
| ! | CCAGGTTATCTTTGTCTTTT+AGG | + | chr1_2:58863236-58863255 | None:intergenic | 35.0% |
| CCTAAAAGACAAAGATAACC+TGG | - | chr1_2:58863233-58863252 | Msa0080590:intron | 35.0% | |
| ! | GTTAGCAAAATCTGAAGTGA+GGG | - | chr1_2:58863473-58863492 | Msa0080590:intron | 35.0% |
| AATGTGGATTTGAGAGAGTA+TGG | - | chr1_2:58863633-58863652 | Msa0080590:CDS | 35.0% | |
| CAACTCAGATAATGTTGACA+TGG | + | chr1_2:58863682-58863701 | None:intergenic | 35.0% | |
| TGTCAACATTATCTGAGTTG+AGG | - | chr1_2:58863682-58863701 | Msa0080590:CDS | 35.0% | |
| ! | TCAAAGCATTCATTATGGTC+TGG | + | chr1_2:58863728-58863747 | None:intergenic | 35.0% |
| GAAGAAAAACCAAGAATGTC+AGG | + | chr1_2:58863832-58863851 | None:intergenic | 35.0% | |
| TTCTGATCAAGAATTGACTG+TGG | + | chr1_2:58863943-58863962 | None:intergenic | 35.0% | |
| TTATTCTCAAGAGTCGTTGT+CGG | - | chr1_2:58863975-58863994 | Msa0080590:intron | 35.0% | |
| !! | TCTTTGGAATGAATCGAGAA+AGG | + | chr1_2:58864157-58864176 | None:intergenic | 35.0% |
| ! | TATCAGCATTGGACAACTTA+TGG | - | chr1_2:58864205-58864224 | Msa0080590:intron | 35.0% |
| CATTGGACAACTTATGGAAT+CGG | - | chr1_2:58864211-58864230 | Msa0080590:intron | 35.0% | |
| TGGCTATTTGCAACAATTCA+TGG | + | chr1_2:58864293-58864312 | None:intergenic | 35.0% | |
| TGAATTGTTGCAAATAGCCA+TGG | - | chr1_2:58864293-58864312 | Msa0080590:intron | 35.0% | |
| GAAGAAGCTTTCAAATTGGT+TGG | - | chr1_2:58864617-58864636 | Msa0080590:intron | 35.0% | |
| TATCAGGTGATTGAGTGTAA+TGG | + | chr1_2:58864653-58864672 | None:intergenic | 35.0% | |
| !!! | CATTTTGGTTCCTAAATGTG+AGG | - | chr1_2:58864766-58864785 | Msa0080590:CDS | 35.0% |
| ACTAACGGAAGATAGATTTG+AGG | + | chr1_2:58864836-58864855 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCATGAATGTGTA+TGG | + | chr1_2:58864942-58864961 | None:intergenic | 35.0% |
| TACACATTCATGGACCAAAA+TGG | - | chr1_2:58864942-58864961 | Msa0080590:intron | 35.0% | |
| ! | AATAGAGTAAAGGGCCATTT+TGG | + | chr1_2:58864959-58864978 | None:intergenic | 35.0% |
| ! | ATTCTTGTAGGAAGCATATG+AGG | - | chr1_2:58865081-58865100 | Msa0080590:intron | 35.0% |
| !! | AAATTATCAAATGGGCTAGC+AGG | + | chr1_2:58865157-58865176 | None:intergenic | 35.0% |
| !! | AATCTTGATCTGTTTTGGGT+GGG | - | chr1_2:58865422-58865441 | Msa0080590:five_prime_UTR | 35.0% |
| !!! | ACTAACTGTTTTGGAGTCAA+TGG | - | chr1_2:58865467-58865486 | Msa0080590:five_prime_UTR | 35.0% |
| !!! | CTAACTGTTTTGGAGTCAAT+GGG | - | chr1_2:58865468-58865487 | Msa0080590:five_prime_UTR | 35.0% |
| !!! | TAACTGTTTTGGAGTCAATG+GGG | - | chr1_2:58865469-58865488 | Msa0080590:five_prime_UTR | 35.0% |
| GAAGTCCTACCAAGTTAGTT+TGG | + | chr1_2:58858111-58858130 | None:intergenic | 40.0% | |
| GGGAATTGTGTAGAAAATGG+GGG | - | chr1_2:58858583-58858602 | Msa0080590:intron | 40.0% | |
| TTGAATGTAACCACGTGTGT+TGG | - | chr1_2:58858789-58858808 | Msa0080590:CDS | 40.0% | |
| ! | GCTGTGTTATTCTCATTGCA+AGG | - | chr1_2:58858920-58858939 | Msa0080590:CDS | 40.0% |
| AACCAATTGAGCATGCTTGT+TGG | - | chr1_2:58859177-58859196 | Msa0080590:intron | 40.0% | |
| CAACCTCATGAACAAGTCAA+TGG | + | chr1_2:58859248-58859267 | None:intergenic | 40.0% | |
| AGGATGAGCTTCCAAATGAA+AGG | - | chr1_2:58859300-58859319 | Msa0080590:CDS | 40.0% | |
| TAATGTAACTTCGGAGCTCT+TGG | - | chr1_2:58859810-58859829 | Msa0080590:CDS | 40.0% | |
| TTGGTTGCCAATCTCTAACA+AGG | - | chr1_2:58859863-58859882 | Msa0080590:CDS | 40.0% | |
| AACAAGGTTCATCTACTGTC+AGG | - | chr1_2:58859879-58859898 | Msa0080590:CDS | 40.0% | |
| ! | GAAAGTATGCATGCTATCAC+AGG | - | chr1_2:58860114-58860133 | Msa0080590:intron | 40.0% |
| ! | CCTCAAACAGCAGTTTTCAT+GGG | + | chr1_2:58860152-58860171 | None:intergenic | 40.0% |
| ! | CCATGAAAACTGCTGTTTGA+GGG | - | chr1_2:58860150-58860169 | Msa0080590:intron | 40.0% |
| !!! | CTACCTTTTTTTGGCAGGTT+TGG | - | chr1_2:58860315-58860334 | Msa0080590:intron | 40.0% |
| GAACCAAACCTGCCAAAAAA+AGG | + | chr1_2:58860321-58860340 | None:intergenic | 40.0% | |
| CAAAGAAACACACGGCATAA+TGG | + | chr1_2:58860456-58860475 | None:intergenic | 40.0% | |
| GACAGAGGCTCATCATAATT+GGG | - | chr1_2:58860633-58860652 | Msa0080590:intron | 40.0% | |
| AAATACCTGGTTAAGAGGGA+AGG | + | chr1_2:58860760-58860779 | None:intergenic | 40.0% | |
| ACTTTGATACAAGGCAACAC+TGG | - | chr1_2:58861007-58861026 | Msa0080590:intron | 40.0% | |
| CTTTGATACAAGGCAACACT+GGG | - | chr1_2:58861008-58861027 | Msa0080590:intron | 40.0% | |
| ! | TCCTCAAAATGGTTTGGCAA+TGG | - | chr1_2:58861032-58861051 | Msa0080590:CDS | 40.0% |
| ! | ACCATTGCCAAACCATTTTG+AGG | + | chr1_2:58861036-58861055 | None:intergenic | 40.0% |
| ! | TCAAAATGGTTTGGCAATGG+TGG | - | chr1_2:58861035-58861054 | Msa0080590:CDS | 40.0% |
| ! | CTTTTTCTGCAGGGAATCAA+CGG | - | chr1_2:58861296-58861315 | Msa0080590:CDS | 40.0% |
| AATCTGCATGGCTAAAGATG+TGG | + | chr1_2:58861407-58861426 | None:intergenic | 40.0% | |
| TTAGCCATGCAGATTAGATC+AGG | - | chr1_2:58861412-58861431 | Msa0080590:intron | 40.0% | |
| TCTACCTGATCTAATCTGCA+TGG | + | chr1_2:58861419-58861438 | None:intergenic | 40.0% | |
| TGCAGATTAGATCAGGTAGA+CGG | - | chr1_2:58861419-58861438 | Msa0080590:intron | 40.0% | |
| TTCTCCAACAAATTCACTGG+AGG | + | chr1_2:58861503-58861522 | None:intergenic | 40.0% | |
| TGCTTACTGGAAATCGCTAA+TGG | - | chr1_2:58861568-58861587 | Msa0080590:intron | 40.0% | |
| GCTTACTGGAAATCGCTAAT+GGG | - | chr1_2:58861569-58861588 | Msa0080590:intron | 40.0% | |
| CTTACTGGAAATCGCTAATG+GGG | - | chr1_2:58861570-58861589 | Msa0080590:intron | 40.0% | |
| AAGGACTATGAGTGATCCAA+TGG | + | chr1_2:58861763-58861782 | None:intergenic | 40.0% | |
| !! | TTCTGAAGTACAACGACTGT+TGG | + | chr1_2:58861862-58861881 | None:intergenic | 40.0% |
| AGTTGCATGAGAAGAGATTC+AGG | + | chr1_2:58862086-58862105 | None:intergenic | 40.0% | |
| AATGATGCATACAGACGTAG+AGG | - | chr1_2:58862115-58862134 | Msa0080590:CDS | 40.0% | |
| TCATGTGTATGGAAGGAACT+TGG | + | chr1_2:58862182-58862201 | None:intergenic | 40.0% | |
| GGAAACTTCATGTGTATGGA+AGG | + | chr1_2:58862189-58862208 | None:intergenic | 40.0% | |
| GAGAGGAAACTTCATGTGTA+TGG | + | chr1_2:58862193-58862212 | None:intergenic | 40.0% | |
| TCAATCATTGATAGGGCTAC+AGG | - | chr1_2:58862437-58862456 | Msa0080590:CDS | 40.0% | |
| GAGTAGCTGAATTGATCTGT+CGG | - | chr1_2:58862484-58862503 | Msa0080590:CDS | 40.0% | |
| !!! | CGCATAAAGGTAGTTTTGTC+TGG | - | chr1_2:58862716-58862735 | Msa0080590:intron | 40.0% |
| !! | AATTGTTTTTCGAACCCGAG+TGG | - | chr1_2:58862758-58862777 | Msa0080590:CDS | 40.0% |
| ATGTTGTTGGACCCAAGTAA+TGG | - | chr1_2:58863294-58863313 | Msa0080590:CDS | 40.0% | |
| AGATAGACCTTTGATACGCA+GGG | + | chr1_2:58863377-58863396 | None:intergenic | 40.0% | |
| AAGATAGACCTTTGATACGC+AGG | + | chr1_2:58863378-58863397 | None:intergenic | 40.0% | |
| TGTATTATCTGTTGGGATGC+TGG | - | chr1_2:58863398-58863417 | Msa0080590:CDS | 40.0% | |
| ! | CGTTAGCAAAATCTGAAGTG+AGG | - | chr1_2:58863472-58863491 | Msa0080590:intron | 40.0% |
| CTTTCTGCTTCCATATAACC+AGG | - | chr1_2:58863560-58863579 | Msa0080590:intron | 40.0% | |
| AACGGATCAACCTGGTTATA+TGG | + | chr1_2:58863573-58863592 | None:intergenic | 40.0% | |
| TCATCACTGATACCCAAGAA+CGG | + | chr1_2:58863591-58863610 | None:intergenic | 40.0% | |
| CCAAACACAAAGTCTTCATC+AGG | + | chr1_2:58863919-58863938 | None:intergenic | 40.0% | |
| CCTGATGAAGACTTTGTGTT+TGG | - | chr1_2:58863916-58863935 | Msa0080590:CDS | 40.0% | |
| ! | CAGGATTTTCCCTCAAATTC+AGG | - | chr1_2:58864092-58864111 | Msa0080590:intron | 40.0% |
| ! | GATTTTCCCTCAAATTCAGG+AGG | - | chr1_2:58864095-58864114 | Msa0080590:intron | 40.0% |
| TCTTCACCTCCTGAATTTGA+GGG | + | chr1_2:58864104-58864123 | None:intergenic | 40.0% | |
| ATCTTCACCTCCTGAATTTG+AGG | + | chr1_2:58864105-58864124 | None:intergenic | 40.0% | |
| TGTCCAATGCTGATAACATG+AGG | + | chr1_2:58864200-58864219 | None:intergenic | 40.0% | |
| ! | AATGCAGATTCAGAGTACCA+TGG | + | chr1_2:58864313-58864332 | None:intergenic | 40.0% |
| ! | GACTAGCCATAGCGTTATAT+GGG | + | chr1_2:58864569-58864588 | None:intergenic | 40.0% |
| ! | TGACTAGCCATAGCGTTATA+TGG | + | chr1_2:58864570-58864589 | None:intergenic | 40.0% |
| CACGGAAGAAGCTTTCAAAT+TGG | - | chr1_2:58864613-58864632 | Msa0080590:intron | 40.0% | |
| TTGAGTGTAATGGTTCTCGA+AGG | + | chr1_2:58864643-58864662 | None:intergenic | 40.0% | |
| AGTGACACAACCTCACATTT+AGG | + | chr1_2:58864779-58864798 | None:intergenic | 40.0% | |
| GATAACGCCATACACATTCA+TGG | - | chr1_2:58864932-58864951 | Msa0080590:intron | 40.0% | |
| ! | TTGTAGGAAGCATATGAGGA+TGG | - | chr1_2:58865085-58865104 | Msa0080590:intron | 40.0% |
| ! | GATAATTTTCTCAAGGCTGC+TGG | - | chr1_2:58865169-58865188 | Msa0080590:intron | 40.0% |
| TGGATGTTAACTAGCTAGCT+AGG | - | chr1_2:58865189-58865208 | Msa0080590:intron | 40.0% | |
| CAGTTTGTGGTATGCCTATA+TGG | - | chr1_2:58865399-58865418 | Msa0080590:five_prime_UTR | 40.0% | |
| !! | GAATCTTGATCTGTTTTGGG+TGG | - | chr1_2:58865421-58865440 | Msa0080590:five_prime_UTR | 40.0% |
| TTGTCGTTCAGGAATGGAGA+GGG | + | chr1_2:58858040-58858059 | None:intergenic | 45.0% | |
| AGAAGGTTGTCGTTCAGGAA+TGG | + | chr1_2:58858046-58858065 | None:intergenic | 45.0% | |
| AGTGAAGAAGGTTGTCGTTC+AGG | + | chr1_2:58858051-58858070 | None:intergenic | 45.0% | |
| GTATGGTAGGTGAGTGAAGA+AGG | + | chr1_2:58858063-58858082 | None:intergenic | 45.0% | |
| !!! | TGTTTTGGTCACTGCCCTTT+TGG | - | chr1_2:58858198-58858217 | Msa0080590:three_prime_UTR | 45.0% |
| AGAAAACCGTCGAACCAGAA+AGG | + | chr1_2:58858302-58858321 | None:intergenic | 45.0% | |
| AGAAAATGGGGGTCATCTCA+AGG | - | chr1_2:58858594-58858613 | Msa0080590:intron | 45.0% | |
| CTTGATCTTGACCTCAAAGC+AGG | + | chr1_2:58858659-58858678 | None:intergenic | 45.0% | |
| TAACCACGTGTGTTGGACAT+TGG | - | chr1_2:58858796-58858815 | Msa0080590:CDS | 45.0% | |
| CACCAACAAGCATGCTCAAT+TGG | + | chr1_2:58859182-58859201 | None:intergenic | 45.0% | |
| TTGTTCATGAGGTTGAACCC+TGG | - | chr1_2:58859253-58859272 | Msa0080590:intron | 45.0% | |
| CTTGGACTATTCCAAGGATG+AGG | - | chr1_2:58859828-58859847 | Msa0080590:CDS | 45.0% | |
| TTCCAAGGATGAGGCTATTC+AGG | - | chr1_2:58859837-58859856 | Msa0080590:CDS | 45.0% | |
| ! | CAGTTTTCATGGGTTTCACC+AGG | + | chr1_2:58860142-58860161 | None:intergenic | 45.0% |
| ! | CCCATGAAAACTGCTGTTTG+AGG | - | chr1_2:58860149-58860168 | Msa0080590:intron | 45.0% |
| ! | CCCTCAAACAGCAGTTTTCA+TGG | + | chr1_2:58860153-58860172 | None:intergenic | 45.0% |
| !! | TGAAAGGCATTGCAAGCTTG+AGG | + | chr1_2:58860176-58860195 | None:intergenic | 45.0% |
| CTTGCAATGCCTTTCAGCAA+TGG | - | chr1_2:58860180-58860199 | Msa0080590:intron | 45.0% | |
| AAAGTGACGATGCTGACATC+AGG | - | chr1_2:58860611-58860630 | Msa0080590:intron | 45.0% | |
| GGACAGAGGCTCATCATAAT+TGG | - | chr1_2:58860632-58860651 | Msa0080590:intron | 45.0% | |
| AGGGAAGGATCCTTTACTTC+TGG | + | chr1_2:58860745-58860764 | None:intergenic | 45.0% | |
| GCAGCTGTAGCAGCTAAAAA+AGG | + | chr1_2:58860808-58860827 | None:intergenic | 45.0% | |
| ACGCATAGTTGTGCTTTCCT+TGG | + | chr1_2:58860962-58860981 | None:intergenic | 45.0% | |
| CACAACTATGCGTCGTGTAT+TGG | - | chr1_2:58860969-58860988 | Msa0080590:intron | 45.0% | |
| !!! | AATGGTGGTTTTGTCGAGGA+TGG | - | chr1_2:58861050-58861069 | Msa0080590:CDS | 45.0% |
| GGCCTACTTCATTGAGAACA+CGG | - | chr1_2:58861071-58861090 | Msa0080590:CDS | 45.0% | |
| GCCTACTTCATTGAGAACAC+GGG | - | chr1_2:58861072-58861091 | Msa0080590:CDS | 45.0% | |
| ACCCGTGTTCTCAATGAAGT+AGG | + | chr1_2:58861076-58861095 | None:intergenic | 45.0% | |
| !! | CGTTGATTCCCTGCAGAAAA+AGG | + | chr1_2:58861298-58861317 | None:intergenic | 45.0% |
| AGCCTCTGTGATACATCATC+TGG | - | chr1_2:58861327-58861346 | Msa0080590:CDS | 45.0% | |
| GTCCAGATGATGTATCACAG+AGG | + | chr1_2:58861332-58861351 | None:intergenic | 45.0% | |
| ! | TTTTCCGGAGATGTCTGCAA+AGG | + | chr1_2:58861471-58861490 | None:intergenic | 45.0% |
| ACATCTCCGGAAAAGTTTCC+AGG | - | chr1_2:58861477-58861496 | Msa0080590:intron | 45.0% | |
| !! | GCAGCCACTATTTGACTTGA+TGG | - | chr1_2:58861692-58861711 | Msa0080590:CDS | 45.0% |
| GTTGTTGGAAGAGCAACCAT+TGG | - | chr1_2:58861744-58861763 | Msa0080590:CDS | 45.0% | |
| GAGATTCAGGAAATCCCTAG+AGG | + | chr1_2:58862073-58862092 | None:intergenic | 45.0% | |
| CACATGAAGTTTCCTCTCTG+CGG | - | chr1_2:58862195-58862214 | Msa0080590:intron | 45.0% | |
| CATATATCTAGACCGCAGAG+AGG | + | chr1_2:58862210-58862229 | None:intergenic | 45.0% | |
| CTCTCTGCGGTCTAGATATA+TGG | - | chr1_2:58862208-58862227 | Msa0080590:intron | 45.0% | |
| TTACTTGAAAAGCTCCGCAG+AGG | - | chr1_2:58862287-58862306 | Msa0080590:intron | 45.0% | |
| GTACCAATGCTGCAGATCAT+GGG | - | chr1_2:58862318-58862337 | Msa0080590:intron | 45.0% | |
| ATTCCCATGATCTGCAGCAT+TGG | + | chr1_2:58862324-58862343 | None:intergenic | 45.0% | |
| GTCGCAGAAGAATGGAAACA+AGG | - | chr1_2:58862374-58862393 | Msa0080590:intron | 45.0% | |
| GAAGAATGGAAACAAGGCTG+TGG | - | chr1_2:58862380-58862399 | Msa0080590:intron | 45.0% | |
| TCCAAAAGGCAGAAAGAAGC+TGG | + | chr1_2:58862616-58862635 | None:intergenic | 45.0% | |
| CAGTAAAGGTGAAACCACTC+GGG | + | chr1_2:58862775-58862794 | None:intergenic | 45.0% | |
| GCAGTAAAGGTGAAACCACT+CGG | + | chr1_2:58862776-58862795 | None:intergenic | 45.0% | |
| AACATAGTCCAGAGAGACAG+AGG | + | chr1_2:58863279-58863298 | None:intergenic | 45.0% | |
| GTCTCTCTGGACTATGTTGT+TGG | - | chr1_2:58863281-58863300 | Msa0080590:intron | 45.0% | |
| TGATATACTCTTCCTCTGGC+AGG | - | chr1_2:58863342-58863361 | Msa0080590:CDS | 45.0% | |
| ATAGACCTTTGATACGCAGG+GGG | + | chr1_2:58863375-58863394 | None:intergenic | 45.0% | |
| GATAGACCTTTGATACGCAG+GGG | + | chr1_2:58863376-58863395 | None:intergenic | 45.0% | |
| ACGATGTGAGCACATCATTC+AGG | + | chr1_2:58863455-58863474 | None:intergenic | 45.0% | |
| !! | TAACCAGGTTGATCCGTTCT+TGG | - | chr1_2:58863575-58863594 | Msa0080590:intron | 45.0% |
| !! | AACCAGGTTGATCCGTTCTT+GGG | - | chr1_2:58863576-58863595 | Msa0080590:intron | 45.0% |
| TTTCAGCACCCTGACATTCT+TGG | - | chr1_2:58863820-58863839 | Msa0080590:intron | 45.0% | |
| ATGCTGATAACATGAGGCTG+CGG | + | chr1_2:58864194-58864213 | None:intergenic | 45.0% | |
| CAGCCTCATGTTATCAGCAT+TGG | - | chr1_2:58864194-58864213 | Msa0080590:intron | 45.0% | |
| CTAGTCAGTGTGAATCGCTT+GGG | - | chr1_2:58864583-58864602 | Msa0080590:intron | 45.0% | |
| AATCGCTTGGGACATGTTCA+CGG | - | chr1_2:58864595-58864614 | Msa0080590:intron | 45.0% | |
| ATCACCTGATAAGTCGTCTC+TGG | - | chr1_2:58864662-58864681 | Msa0080590:intron | 45.0% | |
| TGCGTTACTGTTACGAGCAA+AGG | + | chr1_2:58864688-58864707 | None:intergenic | 45.0% | |
| CAGTAACGCAGCACTTGAAA+AGG | - | chr1_2:58864698-58864717 | Msa0080590:intron | 45.0% | |
| ACAAGTAGCAGCATTGCCAA+GGG | - | chr1_2:58865114-58865133 | Msa0080590:intron | 45.0% | |
| !! | TTATCAAATGGGCTAGCAGG+AGG | + | chr1_2:58865154-58865173 | None:intergenic | 45.0% |
| !!! | GTTTTGGAGTCAATGGGGTT+TGG | - | chr1_2:58865474-58865493 | Msa0080590:five_prime_UTR | 45.0% |
| ! | GTCAATGGGGTTTGGTTACT+TGG | - | chr1_2:58865482-58865501 | Msa0080590:five_prime_UTR | 45.0% |
| ! | ATGGGGTTTGGTTACTTGGT+AGG | - | chr1_2:58865486-58865505 | Msa0080590:five_prime_UTR | 45.0% |
| ! | TGGGGTTTGGTTACTTGGTA+GGG | - | chr1_2:58865487-58865506 | Msa0080590:five_prime_UTR | 45.0% |
| GTTGTCGTTCAGGAATGGAG+AGG | + | chr1_2:58858041-58858060 | None:intergenic | 50.0% | |
| GAGTGAGTGAGTGGTATGGT+AGG | + | chr1_2:58858076-58858095 | None:intergenic | 50.0% | |
| AAGATCTGGGAGTGAGTGAG+TGG | + | chr1_2:58858085-58858104 | None:intergenic | 50.0% | |
| CACACATGCTCTCACAAGCT+GGG | + | chr1_2:58858628-58858647 | None:intergenic | 50.0% | |
| ACACACATGCTCTCACAAGC+TGG | + | chr1_2:58858629-58858648 | None:intergenic | 50.0% | |
| !! | GTGTTTGCTGTCCTGCTTTG+AGG | - | chr1_2:58858645-58858664 | Msa0080590:intron | 50.0% |
| ! | ACACACGAACCGGGGATTTT+GGG | + | chr1_2:58858724-58858743 | None:intergenic | 50.0% |
| ! | AACACACGAACCGGGGATTT+TGG | + | chr1_2:58858725-58858744 | None:intergenic | 50.0% |
| GTACGATAACACACGAACCG+GGG | + | chr1_2:58858732-58858751 | None:intergenic | 50.0% | |
| GGTACGATAACACACGAACC+GGG | + | chr1_2:58858733-58858752 | None:intergenic | 50.0% | |
| GGGTACGATAACACACGAAC+CGG | + | chr1_2:58858734-58858753 | None:intergenic | 50.0% | |
| TGTCCAATGTCCAACACACG+TGG | + | chr1_2:58858802-58858821 | None:intergenic | 50.0% | |
| AAGAGGAGTGACTGCAGGTA+GGG | + | chr1_2:58859095-58859114 | None:intergenic | 50.0% | |
| GGAGCTCTTGGACTATTCCA+AGG | - | chr1_2:58859822-58859841 | Msa0080590:CDS | 50.0% | |
| TGCCTGAATAGCCTCATCCT+TGG | + | chr1_2:58859842-58859861 | None:intergenic | 50.0% | |
| GATGAGGCTATTCAGGCACT+TGG | - | chr1_2:58859844-58859863 | Msa0080590:CDS | 50.0% | |
| AGGTTGTCCGTAGTGAAAGC+CGG | - | chr1_2:58860662-58860681 | Msa0080590:intron | 50.0% | |
| TACCAACAACTGAACCAGCC+CGG | + | chr1_2:58860684-58860703 | None:intergenic | 50.0% | |
| CCTTTACTTCTGGTCGTGGT+TGG | + | chr1_2:58860735-58860754 | None:intergenic | 50.0% | |
| CCAACCACGACCAGAAGTAA+AGG | - | chr1_2:58860732-58860751 | Msa0080590:intron | 50.0% | |
| GGATCCTTTACTTCTGGTCG+TGG | + | chr1_2:58860739-58860758 | None:intergenic | 50.0% | |
| AGGATCCTTCCCTCTTAACC+AGG | - | chr1_2:58860752-58860771 | Msa0080590:intron | 50.0% | |
| CAACACTGGGCTCCTCAAAA+TGG | - | chr1_2:58861021-58861040 | Msa0080590:CDS | 50.0% | |
| CTGGGCTCCTCAAAATGGTT+TGG | - | chr1_2:58861026-58861045 | Msa0080590:CDS | 50.0% | |
| !!! | TGGCAATGGTGGTTTTGTCG+AGG | - | chr1_2:58861046-58861065 | Msa0080590:CDS | 50.0% |
| GGTAGACGGTTAGCAGAGAT+TGG | - | chr1_2:58861433-58861452 | Msa0080590:intron | 50.0% | |
| GTGACCTTTGCAGACATCTC+CGG | - | chr1_2:58861464-58861483 | Msa0080590:intron | 50.0% | |
| ! | TGGAGGCCTGGAAACTTTTC+CGG | + | chr1_2:58861486-58861505 | None:intergenic | 50.0% |
| CAACAAATTCACTGGAGGCC+TGG | + | chr1_2:58861498-58861517 | None:intergenic | 50.0% | |
| CAGGCCTCCAGTGAATTTGT+TGG | - | chr1_2:58861496-58861515 | Msa0080590:intron | 50.0% | |
| GCTCTTCCAACAACACCAGA+TGG | + | chr1_2:58861738-58861757 | None:intergenic | 50.0% | |
| TCGAGCACTCACTTCTGCAT+TGG | - | chr1_2:58861785-58861804 | Msa0080590:CDS | 50.0% | |
| ACAGACGTAGAGGCTCGTAT+TGG | - | chr1_2:58862125-58862144 | Msa0080590:CDS | 50.0% | |
| GGTACCAATGCTGCAGATCA+TGG | - | chr1_2:58862317-58862336 | Msa0080590:intron | 50.0% | |
| GGGATACAGTCGCAGAAGAA+TGG | - | chr1_2:58862366-58862385 | Msa0080590:intron | 50.0% | |
| ! | GCCAGCTTCTTTCTGCCTTT+TGG | - | chr1_2:58862612-58862631 | Msa0080590:intron | 50.0% |
| GAGTTACAAGTTACGGCCGT+AGG | + | chr1_2:58863078-58863097 | None:intergenic | 50.0% | |
| ACAGAGGAAGCTGGAAGAAG+CGG | + | chr1_2:58863263-58863282 | None:intergenic | 50.0% | |
| TACCCAAGAACGGATCAACC+TGG | + | chr1_2:58863581-58863600 | None:intergenic | 50.0% | |
| TCTCTGACAGTAGCACAGTC+AGG | + | chr1_2:58863888-58863907 | None:intergenic | 50.0% | |
| ! | AGAGTCGTTGTCGGTTGATG+AGG | - | chr1_2:58863984-58864003 | Msa0080590:intron | 50.0% |
| TGATAACATGAGGCTGCGGA+GGG | + | chr1_2:58864190-58864209 | None:intergenic | 50.0% | |
| ACTGGAGGTAGCAAGTCATG+TGG | - | chr1_2:58864515-58864534 | Msa0080590:intron | 50.0% | |
| GTTATATGGGAGAGGCGAAG+TGG | + | chr1_2:58864556-58864575 | None:intergenic | 50.0% | |
| GCCTCTCCCATATAACGCTA+TGG | - | chr1_2:58864560-58864579 | Msa0080590:intron | 50.0% | |
| GCCATAGCGTTATATGGGAG+AGG | + | chr1_2:58864564-58864583 | None:intergenic | 50.0% | |
| GCTAGTCAGTGTGAATCGCT+TGG | - | chr1_2:58864582-58864601 | Msa0080590:intron | 50.0% | |
| AAGGCCAGAGACGACTTATC+AGG | + | chr1_2:58864669-58864688 | None:intergenic | 50.0% | |
| ! | CTTGGCAATGCTGCTACTTG+TGG | + | chr1_2:58865115-58865134 | None:intergenic | 50.0% |
| CACAAGTAGCAGCATTGCCA+AGG | - | chr1_2:58865113-58865132 | Msa0080590:intron | 50.0% | |
| TAGCAGGAGGCAACTTCATG+GGG | + | chr1_2:58865141-58865160 | None:intergenic | 50.0% | |
| CTAGCAGGAGGCAACTTCAT+GGG | + | chr1_2:58865142-58865161 | None:intergenic | 50.0% | |
| TTCAGGAATGGAGAGGGTGG+GGG | + | chr1_2:58858034-58858053 | None:intergenic | 55.0% | |
| GTTCAGGAATGGAGAGGGTG+GGG | + | chr1_2:58858035-58858054 | None:intergenic | 55.0% | |
| CGTTCAGGAATGGAGAGGGT+GGG | + | chr1_2:58858036-58858055 | None:intergenic | 55.0% | |
| TCGTTCAGGAATGGAGAGGG+TGG | + | chr1_2:58858037-58858056 | None:intergenic | 55.0% | |
| CTGGGAGTGAGTGAGTGGTA+TGG | + | chr1_2:58858080-58858099 | None:intergenic | 55.0% | |
| AGAGGAGTGACTGCAGGTAG+GGG | + | chr1_2:58859094-58859113 | None:intergenic | 55.0% | |
| CAAGAGGAGTGACTGCAGGT+AGG | + | chr1_2:58859096-58859115 | None:intergenic | 55.0% | |
| TTGGCAAGAGGAGTGACTGC+AGG | + | chr1_2:58859100-58859119 | None:intergenic | 55.0% | |
| TGCATGCTATCACAGGAGCC+TGG | - | chr1_2:58860121-58860140 | Msa0080590:intron | 55.0% | |
| CGATGCTGACATCAGGACAG+AGG | - | chr1_2:58860618-58860637 | Msa0080590:intron | 55.0% | |
| GGTTGTCCGTAGTGAAAGCC+GGG | - | chr1_2:58860663-58860682 | Msa0080590:intron | 55.0% | |
| AACCAGCCCGGCTTTCACTA+CGG | + | chr1_2:58860672-58860691 | None:intergenic | 55.0% | |
| GCTGCTACAGCTGCGACAAT+TGG | - | chr1_2:58860814-58860833 | Msa0080590:CDS | 55.0% | |
| CAGAAGTGAGTGCTCGAGCA+AGG | + | chr1_2:58861782-58861801 | None:intergenic | 55.0% | |
| CACCTGCTGCACACGTAAGT+TGG | + | chr1_2:58861811-58861830 | None:intergenic | 55.0% | |
| TGGTACCATCTCTGCCTCTG+CGG | + | chr1_2:58862304-58862323 | None:intergenic | 55.0% | |
| TCCAGCTTCCTCTGTCTCTC+TGG | - | chr1_2:58863268-58863287 | Msa0080590:intron | 55.0% | |
| TCCAGAGAGACAGAGGAAGC+TGG | + | chr1_2:58863272-58863291 | None:intergenic | 55.0% | |
| GGAGGGGATACAGGCATCTT+TGG | + | chr1_2:58864173-58864192 | None:intergenic | 55.0% | |
| GATAACATGAGGCTGCGGAG+GGG | + | chr1_2:58864189-58864208 | None:intergenic | 55.0% | |
| CTGATAACATGAGGCTGCGG+AGG | + | chr1_2:58864191-58864210 | None:intergenic | 55.0% | |
| ACGGTGCATCCACTGCTTGT+AGG | - | chr1_2:58864491-58864510 | Msa0080590:intron | 55.0% | |
| CATCCACTGCTTGTAGGCAC+TGG | - | chr1_2:58864497-58864516 | Msa0080590:intron | 55.0% | |
| GAGGTAGCAAGTCATGTGGC+AGG | - | chr1_2:58864519-58864538 | Msa0080590:intron | 55.0% | |
| GCTAGCAGGAGGCAACTTCA+TGG | + | chr1_2:58865143-58865162 | None:intergenic | 55.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr1_2:58858988-58859007 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | - | chr1_2:58858992-58859011 | Msa0080590:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | - | chr1_2:58858993-58859012 | Msa0080590:intron | 60.0% | |
| GAGGAGTGACTGCAGGTAGG+GGG | + | chr1_2:58859093-58859112 | None:intergenic | 60.0% | |
| !! | AGCCGGGCTGGTTCAGTTGT+TGG | - | chr1_2:58860679-58860698 | Msa0080590:intron | 60.0% |
| GGCCAACTTACGTGTGCAGC+AGG | - | chr1_2:58861806-58861825 | Msa0080590:intron | 60.0% | |
| AAGCTCCGCAGAGGCAGAGA+TGG | - | chr1_2:58862296-58862315 | Msa0080590:intron | 60.0% | |
| GCTGGAAGAAGCGGATCACC+AGG | + | chr1_2:58863254-58863273 | None:intergenic | 60.0% | |
| CGTTGCCCCCTGCGTATCAA+AGG | - | chr1_2:58863367-58863386 | Msa0080590:CDS | 60.0% | |
| CCTCCAGTGCCTACAAGCAG+TGG | + | chr1_2:58864503-58864522 | None:intergenic | 60.0% | |
| !! | CCACTGCTTGTAGGCACTGG+AGG | - | chr1_2:58864500-58864519 | Msa0080590:intron | 60.0% |
| GGCAACTTCATGGGGTCCCT+TGG | + | chr1_2:58865133-58865152 | None:intergenic | 60.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr1_2:58858987-58859006 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr1_2:58859004-58859023 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr1_2:58859005-58859024 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr1_2:58859004-58859023 | Msa0080590:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr1_2:58859005-58859024 | Msa0080590:intron | 65.0% | |
| GTCCGTAGTGAAAGCCGGGC+TGG | - | chr1_2:58860667-58860686 | Msa0080590:intron | 65.0% | |
| TGAGGCTGCGGAGGGGATAC+AGG | + | chr1_2:58864182-58864201 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1_2:58858998-58859017 | Msa0080590:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1_2:58858999-58859018 | Msa0080590:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr1_2:58859003-58859022 | Msa0080590:intron | 70.0% | |
| GGGGGCAACGTTCCTGCCAG+AGG | + | chr1_2:58863357-58863376 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 58857978 | 58865515 | 58857978 | ID=Msa0080590;Name=Msa0080590 |
| chr1_2 | mRNA | 58857978 | 58865515 | 58857978 | ID=Msa0080590-mRNA-1;Parent=Msa0080590;Name=Msa0080590-mRNA-1;_AED=0.13;_eAED=0.13;_QI=161|0.89|0.9|1|0.94|0.9|20|317|1024 |
| chr1_2 | exon | 58857978 | 58858402 | 58857978 | ID=Msa0080590-mRNA-1:exon:18990;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58858774 | 58858980 | 58858774 | ID=Msa0080590-mRNA-1:exon:18989;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58859261 | 58859398 | 58859261 | ID=Msa0080590-mRNA-1:exon:18988;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58859488 | 58859622 | 58859488 | ID=Msa0080590-mRNA-1:exon:18987;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58859720 | 58859911 | 58859720 | ID=Msa0080590-mRNA-1:exon:18986;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58860005 | 58860129 | 58860005 | ID=Msa0080590-mRNA-1:exon:18985;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58860184 | 58860262 | 58860184 | ID=Msa0080590-mRNA-1:exon:18984;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58860769 | 58860918 | 58860769 | ID=Msa0080590-mRNA-1:exon:18983;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58861012 | 58861416 | 58861012 | ID=Msa0080590-mRNA-1:exon:18982;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58861666 | 58861812 | 58861666 | ID=Msa0080590-mRNA-1:exon:18981;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58861902 | 58862185 | 58861902 | ID=Msa0080590-mRNA-1:exon:18980;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58862400 | 58862596 | 58862400 | ID=Msa0080590-mRNA-1:exon:18979;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58862720 | 58863009 | 58862720 | ID=Msa0080590-mRNA-1:exon:18978;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58863114 | 58863161 | 58863114 | ID=Msa0080590-mRNA-1:exon:18977;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58863292 | 58863420 | 58863292 | ID=Msa0080590-mRNA-1:exon:18976;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58863593 | 58863707 | 58863593 | ID=Msa0080590-mRNA-1:exon:18975;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58863870 | 58863985 | 58863870 | ID=Msa0080590-mRNA-1:exon:18974;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58864117 | 58864191 | 58864117 | ID=Msa0080590-mRNA-1:exon:18973;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58864760 | 58864912 | 58864760 | ID=Msa0080590-mRNA-1:exon:18972;Parent=Msa0080590-mRNA-1 |
| chr1_2 | exon | 58865373 | 58865515 | 58865373 | ID=Msa0080590-mRNA-1:exon:18971;Parent=Msa0080590-mRNA-1 |
| chr1_2 | five_prime_UTR | 58865373 | 58865515 | 58865373 | ID=Msa0080590-mRNA-1:five_prime_utr;Parent=Msa0080590-mRNA-1 |
| chr1_2 | five_prime_UTR | 58864895 | 58864912 | 58864895 | ID=Msa0080590-mRNA-1:five_prime_utr;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58864760 | 58864894 | 58864760 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58864117 | 58864191 | 58864117 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58863870 | 58863985 | 58863870 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58863593 | 58863707 | 58863593 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58863292 | 58863420 | 58863292 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58863114 | 58863161 | 58863114 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58862720 | 58863009 | 58862720 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58862400 | 58862596 | 58862400 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58861902 | 58862185 | 58861902 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58861666 | 58861812 | 58861666 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58861012 | 58861416 | 58861012 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58860769 | 58860918 | 58860769 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58860184 | 58860262 | 58860184 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58860005 | 58860129 | 58860005 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58859720 | 58859911 | 58859720 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58859488 | 58859622 | 58859488 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58859261 | 58859398 | 58859261 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58858774 | 58858980 | 58858774 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | CDS | 58858295 | 58858402 | 58858295 | ID=Msa0080590-mRNA-1:cds;Parent=Msa0080590-mRNA-1 |
| chr1_2 | three_prime_UTR | 58857978 | 58858294 | 58857978 | ID=Msa0080590-mRNA-1:three_prime_utr;Parent=Msa0080590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
