AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080750 MtrunA17_Chr2g0303921 76.339 224 32 4 18 240 77 280 2.79e-94 282
Msa0080750 MtrunA17_Chr2g0328761 85.915 142 18 1 210 351 368 507 5.26e-71 229
Msa0080750 MtrunA17_Chr3g0088471 57.447 141 58 1 210 350 397 535 5.76e-51 177
Msa0080750 MtrunA17_Chr8g0352171 51.724 145 65 1 207 351 249 388 9.18e-47 163
Msa0080750 MtrunA17_Chr8g0352151 48.936 141 70 1 210 350 413 551 5.15e-43 156
Msa0080750 MtrunA17_Chr5g0448591 40.157 127 76 0 224 350 423 549 1.20e-26 110
Msa0080750 MtrunA17_Chr7g0243421 40.476 126 75 0 224 349 145 270 2.27e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080750 AT1G51340.1 64.085 142 49 1 210 351 370 509 1.85e-56 192
Msa0080750 AT1G51340.3 64.085 142 49 1 210 351 376 515 3.49e-56 191
Msa0080750 AT1G51340.5 64.085 142 49 1 210 351 376 515 3.49e-56 191
Msa0080750 AT1G51340.2 64.085 142 49 1 210 351 376 515 3.49e-56 191
Msa0080750 AT3G08040.2 55.319 141 61 1 210 350 276 414 1.07e-47 167
Msa0080750 AT3G08040.1 55.319 141 61 1 210 350 380 518 4.49e-47 167
Msa0080750 AT4G38380.2 42.188 128 74 0 224 351 427 554 4.29e-26 109
Msa0080750 AT4G38380.1 42.188 128 74 0 224 351 427 554 4.29e-26 109
Msa0080750 AT4G38380.5 42.188 128 74 0 224 351 417 544 6.09e-26 108
Msa0080750 AT4G38380.4 42.188 128 74 0 224 351 317 444 1.88e-25 107
Msa0080750 AT4G38380.3 42.188 128 74 0 224 351 355 482 2.52e-25 106
Msa0080750 AT2G38330.1 41.406 128 75 0 224 351 388 515 1.03e-23 102

Find 124 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTGGATTCATTGGAATT+TGG 0.178835 1_2:+59113863 Msa0080750:CDS
GATTTGATTATGAAATAATT+TGG 0.257469 1_2:+59116269 Msa0080750:three_prime_UTR
TATTTAATGGTGTCAACTTT+GGG 0.258127 1_2:+59113372 Msa0080750:CDS
TGTTTGGCCTTTGTATTTAA+TGG 0.267368 1_2:+59113359 Msa0080750:CDS
AAGCAGATGGGCATGGTTCT+TGG 0.282921 1_2:+59113107 Msa0080750:CDS
TATGAAACAGTTCAGAGTTT+AGG 0.284451 1_2:+59116238 Msa0080750:three_prime_UTR
AATTCTGCAACTGAATTATA+AGG 0.291751 1_2:-59112443 None:intergenic
TGCAGAAGTTTCTGATGATT+TGG 0.309695 1_2:+59112502 Msa0080750:CDS
TCTACACCCTTAGTAGATTC+AGG 0.310531 1_2:-59112752 None:intergenic
TTGGCATTTGCATTCATTCT+TGG 0.314653 1_2:+59113131 Msa0080750:CDS
ATGTTGTATAACTTCTGTTT+TGG 0.337113 1_2:+59116328 Msa0080750:three_prime_UTR
GATTCATAACTATTGTTTGC+TGG 0.341036 1_2:+59114222 Msa0080750:three_prime_UTR
TTTCAAATTGAAGAAGATCT+TGG 0.341511 1_2:+59115914 Msa0080750:three_prime_UTR
ATTATGAAATAATTTGGTTT+AGG 0.342302 1_2:+59116275 Msa0080750:three_prime_UTR
ATACAAAGGCCAAACAGTTC+AGG 0.350521 1_2:-59113352 None:intergenic
TGGTGGATTCATTGGAATTT+GGG 0.353696 1_2:+59113864 Msa0080750:CDS
GTATTTAATGGTGTCAACTT+TGG 0.358346 1_2:+59113371 Msa0080750:CDS
GTTGTAGTTCTTCATTGATA+AGG 0.362173 1_2:-59116030 None:intergenic
TCAACCGCTGGTGGATTCAT+TGG 0.366302 1_2:+59113856 Msa0080750:CDS
GCAAGATCAGTTTCCGCAAC+TGG 0.367595 1_2:-59112602 None:intergenic
GATTCCATCTTAGTGAAATC+TGG 0.369687 1_2:-59114148 None:intergenic
CACCAACCTTACCATTGTTA+AGG 0.373064 1_2:-59112250 None:intergenic
TTTAAGTGGCAGCAGCAAAA+AGG 0.374518 1_2:-59116204 None:intergenic
CCCGTCAAATTCCCTAGTCT+CGG 0.375066 1_2:-59112696 None:intergenic
TGCAGAAAGCTCTGAAAATC+AGG 0.376100 1_2:+59112796 Msa0080750:CDS
TTCTTCTTCATCATCAATCA+AGG 0.399058 1_2:+59111533 Msa0080750:CDS
TTTGCATTCATTCTTGGAAC+AGG 0.399810 1_2:+59113137 Msa0080750:CDS
TTGTAGTTCTTCATTGATAA+GGG 0.404251 1_2:-59116029 None:intergenic
TGAAGATAGTGAAGAGGTGG+AGG 0.408973 1_2:+59112175 Msa0080750:intron
AACACCTTCCTTTCCACCCT+CGG 0.410228 1_2:-59112276 None:intergenic
TACTCAACCCCTGAACTGTT+TGG 0.413268 1_2:+59113343 Msa0080750:CDS
TCCTATTCCTGAATCTACTA+AGG 0.416258 1_2:+59112745 Msa0080750:CDS
CATAGATATTTAATGAAGAT+AGG 0.417947 1_2:-59116078 None:intergenic
ACGACTCTAGAAATGGACTA+TGG 0.421496 1_2:-59115987 None:intergenic
GAAATAGACGACTCTAGAAA+TGG 0.424044 1_2:-59115994 None:intergenic
TATGAAGTCTGAGGAGCGTT+TGG 0.425718 1_2:+59112316 Msa0080750:CDS
CTCTCATAATTCAAATCCTT+CGG 0.430722 1_2:-59112353 None:intergenic
AGTTTCTGATGATTTGGTTA+AGG 0.430775 1_2:+59112508 Msa0080750:CDS
TTCAGAGCTTTCTGCAGCAT+TGG 0.431912 1_2:-59112789 None:intergenic
TATTGATGCAGGATTGGAAC+TGG 0.437676 1_2:+59114045 Msa0080750:intron
TGCAGGATTGGAACTGGATC+AGG 0.440539 1_2:+59114051 Msa0080750:intron
AAGGTGTTGTTGAGATAGAA+TGG 0.440827 1_2:+59112291 Msa0080750:CDS
CCCTTAGTAGATTCAGGAAT+AGG 0.447048 1_2:-59112746 None:intergenic
CTTGGAACAGGATTGCACTT+TGG 0.450496 1_2:+59113149 Msa0080750:CDS
CAGGACCATGGGAATTCCTT+AGG 0.451204 1_2:+59114070 Msa0080750:CDS
TACAAAGGCCAAACAGTTCA+GGG 0.452053 1_2:-59113351 None:intergenic
TCAAATGATGTGATTGAAAC+CGG 0.452898 1_2:+59112395 Msa0080750:CDS
ACGAGTCTAAGAGCATTTGC+TGG 0.455119 1_2:+59113904 Msa0080750:CDS
TCAATAACAATTAGCTCCTA+AGG 0.461793 1_2:-59114086 None:intergenic
TTAGTGGGTTGGACAGAAGC+TGG 0.469792 1_2:+59114311 Msa0080750:three_prime_UTR
TTGCTTAATATGAATATGAC+AGG 0.474014 1_2:+59114288 Msa0080750:three_prime_UTR
GATATTCTAACAACCTCATC+AGG 0.474364 1_2:-59112659 None:intergenic
TCCTGCACCTCATTAGAGTT+GGG 0.474548 1_2:+59113201 Msa0080750:CDS
AACTACAACCATGAGAAAAC+AGG 0.479024 1_2:+59116044 Msa0080750:three_prime_UTR
CCGTCAAATTCCCTAGTCTC+GGG 0.482097 1_2:-59112695 None:intergenic
GGGTCCAGATTTCACTAAGA+TGG 0.482457 1_2:+59114144 Msa0080750:three_prime_UTR
TGATATACTAGAGAAATCAT+TGG 0.482953 1_2:+59112574 Msa0080750:CDS
CCCGAGACTAGGGAATTTGA+CGG 0.485416 1_2:+59112695 Msa0080750:CDS
GATGGGCATGGTTCTTGGAT+TGG 0.490847 1_2:+59113112 Msa0080750:CDS
TTCACTAAGATGGAATCATT+CGG 0.491585 1_2:+59114154 Msa0080750:three_prime_UTR
TCTTATGTATTTCTACGACT+TGG 0.492471 1_2:-59115947 None:intergenic
ATAGATTGTAATTCATCTAA+AGG 0.494563 1_2:+59114364 Msa0080750:three_prime_UTR
AAGTCGTAGAAATACATAAG+AGG 0.497088 1_2:+59115949 Msa0080750:three_prime_UTR
TGTTAGAATATCGAGTTTGA+AGG 0.502677 1_2:+59112670 Msa0080750:CDS
TCCCAACTCTAATGAGGTGC+AGG 0.503744 1_2:-59113202 None:intergenic
ATCCTTAACAATGGTAAGGT+TGG 0.507006 1_2:+59112248 Msa0080750:CDS
AGGTGTTGTTGAGATAGAAT+GGG 0.507045 1_2:+59112292 Msa0080750:CDS
TATGAATATGACAGGTTAGT+GGG 0.511045 1_2:+59114296 Msa0080750:three_prime_UTR
GATATACTAGAGAAATCATT+GGG 0.514095 1_2:+59112575 Msa0080750:CDS
GTCCTGCACCTCATTAGAGT+TGG 0.515845 1_2:+59113200 Msa0080750:CDS
GTTTGAAGGAACCCGAGACT+AGG 0.516717 1_2:+59112684 Msa0080750:CDS
TGCTGTTGTTGCAAAGTCCT+CGG 0.523220 1_2:+59112220 Msa0080750:CDS
CCTCATTAGAGTTGGGATCC+CGG 0.529880 1_2:+59113208 Msa0080750:CDS
TTCTGCTGATTCAGTAAAGG+AGG 0.540629 1_2:+59112466 Msa0080750:CDS
AGAAATCCTTAACAATGGTA+AGG 0.540686 1_2:+59112244 Msa0080750:CDS
ATATGAATATGACAGGTTAG+TGG 0.543159 1_2:+59114295 Msa0080750:three_prime_UTR
TTTGAAGGAACCCGAGACTA+GGG 0.543161 1_2:+59112685 Msa0080750:CDS
TGGTGAAGCCGAGGGTGGAA+AGG 0.554155 1_2:+59112268 Msa0080750:CDS
GAGCATTTGCTGGCTTCTTG+AGG 0.554417 1_2:+59113914 Msa0080750:CDS
TAGTTCTTCATTGATAAGGG+TGG 0.554673 1_2:-59116026 None:intergenic
CAATGAAGATAGTGAAGAGG+TGG 0.556572 1_2:+59112172 Msa0080750:intron
AATTGAAGAAGATCTTGGAC+TGG 0.560414 1_2:+59115919 Msa0080750:three_prime_UTR
ATCATTGGGCTCTCCAGTTG+CGG 0.561350 1_2:+59112589 Msa0080750:CDS
GTAGATGGTTATAAAGCAGA+TGG 0.564031 1_2:+59113094 Msa0080750:intron
GGAGAAAATTGACTCTCCGA+AGG 0.564727 1_2:+59112337 Msa0080750:CDS
GCAGTGAGTGTTGTGATGAC+AGG 0.569605 1_2:+59114118 Msa0080750:three_prime_UTR
TGAAGAATTTGCTGACACTC+TGG 0.569769 1_2:+59114183 Msa0080750:three_prime_UTR
TGCATATTCAGCCTTCTCCA+TGG 0.574962 1_2:+59113406 Msa0080750:CDS
ATTGTTAAGGATTTCTTCCG+AGG 0.576136 1_2:-59112237 None:intergenic
AATATGACAGGTTAGTGGGT+TGG 0.579569 1_2:+59114300 Msa0080750:three_prime_UTR
GAAGCCGAGGGTGGAAAGGA+AGG 0.580298 1_2:+59112272 Msa0080750:CDS
TAGTGGGTTGGACAGAAGCT+GGG 0.580725 1_2:+59114312 Msa0080750:three_prime_UTR
TTGGAACTGGATCAGGACCA+TGG 0.582445 1_2:+59114058 Msa0080750:CDS
TGGTAAGGTTGGTGAAGCCG+AGG 0.583140 1_2:+59112259 Msa0080750:CDS
ATGAGTTTAGCAGCCACACC+AGG 0.586123 1_2:-59114343 None:intergenic
CCTATTCCTGAATCTACTAA+GGG 0.586895 1_2:+59112746 Msa0080750:CDS
GGTTATAAAGCAGATGGGCA+TGG 0.591391 1_2:+59113100 Msa0080750:CDS
CCGGGATCCCAACTCTAATG+AGG 0.591886 1_2:-59113208 None:intergenic
GAAGTTGCATACCATGGAGA+AGG 0.592624 1_2:-59113417 None:intergenic
TTTGCAACAACAGCAGCTGA+TGG 0.594656 1_2:-59112212 None:intergenic
ATTTAATGGTGTCAACTTTG+GGG 0.595581 1_2:+59113373 Msa0080750:CDS
TGGAACTGGATCAGGACCAT+GGG 0.597595 1_2:+59114059 Msa0080750:CDS
CCGAGACTAGGGAATTTGAC+GGG 0.599319 1_2:+59112696 Msa0080750:CDS
TCTGCTGATTCAGTAAAGGA+GGG 0.600137 1_2:+59112467 Msa0080750:CDS
GGTGTTGTTGAGATAGAATG+GGG 0.608380 1_2:+59112293 Msa0080750:CDS
AGTACAAGTCTTACCTGATG+AGG 0.612891 1_2:+59112646 Msa0080750:CDS
GTTGACACCATTAAATACAA+AGG 0.614677 1_2:-59113366 None:intergenic
GTCTCTGAGATGCAAAGCGA+AGG 0.614770 1_2:+59112542 Msa0080750:CDS
AAGGTTGGTGAAGCCGAGGG+TGG 0.618462 1_2:+59112263 Msa0080750:CDS
GGTAAGGTTGGTGAAGCCGA+GGG 0.619918 1_2:+59112260 Msa0080750:CDS
ATTCAATGAAGATAGTGAAG+AGG 0.625805 1_2:+59112169 Msa0080750:intron
TAGATGGTTATAAAGCAGAT+GGG 0.638630 1_2:+59113095 Msa0080750:intron
TCGGAAGAAATCCTTAACAA+TGG 0.640395 1_2:+59112239 Msa0080750:CDS
TATGAGAGTCGAAAGAACAA+TGG 0.656718 1_2:+59112368 Msa0080750:CDS
AGTGTTGTGATGACAGGAGT+GGG 0.658768 1_2:+59114124 Msa0080750:three_prime_UTR
GCTTTGCATCTCAGAGACAG+AGG 0.673562 1_2:-59112537 None:intergenic
TAGCTCCTAAGGAATTCCCA+TGG 0.677278 1_2:-59114075 None:intergenic
AGTTTAGCAGCCACACCAGG+TGG 0.683789 1_2:-59114340 None:intergenic
GAGTGTTGTGATGACAGGAG+TGG 0.694439 1_2:+59114123 Msa0080750:three_prime_UTR
GAGAGTCGAAAGAACAATGG+CGG 0.699704 1_2:+59112371 Msa0080750:CDS
ACAAAGGCCAAACAGTTCAG+GGG 0.700393 1_2:-59113350 None:intergenic
TCTTGCTGTGAAGAGAAGTG+AGG 0.715533 1_2:+59112619 Msa0080750:CDS
AGAATGGGGTATGAAGTCTG+AGG 0.721527 1_2:+59112307 Msa0080750:CDS
AATTCCAATGAATCCACCAG+CGG 0.727441 1_2:-59113860 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCAAATTTATTTTT+TGG + chr1_2:59115146-59115165 Msa0080750:intron 10.0%
!! CATAAATTAAATTTAGATAT+TGG + chr1_2:59115598-59115617 Msa0080750:intron 10.0%
!!! TTTTTCCTTTTAATTGATTT+AGG + chr1_2:59111720-59111739 Msa0080750:intron 15.0%
!!! TGATTTTTATATTTTTGTTG+TGG + chr1_2:59111919-59111938 Msa0080750:intron 15.0%
!!! TTGTTTTCTGAAATTTAATT+AGG + chr1_2:59111991-59112010 Msa0080750:intron 15.0%
!! ATAATTGTATTGAAATTGAT+TGG + chr1_2:59112039-59112058 Msa0080750:intron 15.0%
!!! GGATTTATATATTTTAACAT+GGG + chr1_2:59113053-59113072 Msa0080750:intron 15.0%
!! ATTAAATTGAACACTATAAA+AGG + chr1_2:59115572-59115591 Msa0080750:intron 15.0%
!!! TGTATTTTGTATTTCTATTT+AGG + chr1_2:59115740-59115759 Msa0080750:intron 15.0%
!!! GTATTTTGTATTTCTATTTA+GGG + chr1_2:59115741-59115760 Msa0080750:intron 15.0%
!! ATAATAAAAATGAGTTTAAG+TGG - chr1_2:59116221-59116240 None:intergenic 15.0%
!! GATTTGATTATGAAATAATT+TGG + chr1_2:59116269-59116288 Msa0080750:three_prime_UTR 15.0%
!!! ATTATGAAATAATTTGGTTT+AGG + chr1_2:59116275-59116294 Msa0080750:three_prime_UTR 15.0%
!!! TTGTTCTTTTTAATTGATTG+AGG + chr1_2:59111689-59111708 Msa0080750:intron 20.0%
!!! GTTTTTTTATTTTGTTGAGT+TGG + chr1_2:59111803-59111822 Msa0080750:intron 20.0%
!! TTAATTAGGTTATGTTAACA+AGG + chr1_2:59112005-59112024 Msa0080750:intron 20.0%
!!! GGGATTTATATATTTTAACA+TGG + chr1_2:59113052-59113071 Msa0080750:intron 20.0%
!!! TTTCAATGATTCTTTAAGAT+TGG - chr1_2:59113514-59113533 None:intergenic 20.0%
!!! AATTTTCTTCAATTTTTGAC+TGG + chr1_2:59113634-59113653 Msa0080750:intron 20.0%
!! AGTTAAGAATATACAATTAG+TGG + chr1_2:59113759-59113778 Msa0080750:intron 20.0%
!! AGAATATGAAACAAAACATT+AGG - chr1_2:59113965-59113984 None:intergenic 20.0%
!! ATAGATTGTAATTCATCTAA+AGG + chr1_2:59114364-59114383 Msa0080750:three_prime_UTR 20.0%
!! ATATTACAGTACATGTTATA+AGG + chr1_2:59114427-59114446 Msa0080750:intron 20.0%
!! ACTTATCAAAACTGAAATTA+TGG + chr1_2:59114526-59114545 Msa0080750:intron 20.0%
!! CTTATCAAAACTGAAATTAT+GGG + chr1_2:59114527-59114546 Msa0080750:intron 20.0%
!! AATGAAATAAAATCCTAAAC+CGG - chr1_2:59114593-59114612 None:intergenic 20.0%
!! AAAGCATAAAGCAAAATTAA+AGG - chr1_2:59114889-59114908 None:intergenic 20.0%
!!! CATTTGTAGTTTGTAATTTT+AGG + chr1_2:59115055-59115074 Msa0080750:intron 20.0%
!! TCAATGGAAAATATAAATGA+GGG - chr1_2:59115172-59115191 None:intergenic 20.0%
!! TTCAATGGAAAATATAAATG+AGG - chr1_2:59115173-59115192 None:intergenic 20.0%
!!! AGAATTTGACAAAAGTATAA+AGG + chr1_2:59115231-59115250 Msa0080750:intron 20.0%
!!! TCTAACATAATTTGATGATT+AGG + chr1_2:59115412-59115431 Msa0080750:intron 20.0%
!! AAGTAATGACTAAAATAGTA+TGG + chr1_2:59115650-59115669 Msa0080750:intron 20.0%
!! CATAGATATTTAATGAAGAT+AGG - chr1_2:59116081-59116100 None:intergenic 20.0%
! AAGAAAGAAGGAAATCAAAA+AGG - chr1_2:59111634-59111653 None:intergenic 25.0%
! TGCAACCTAAATCAATTAAA+AGG - chr1_2:59111728-59111747 None:intergenic 25.0%
!!! AATTGATTTAGGTTGCATTT+TGG + chr1_2:59111731-59111750 Msa0080750:intron 25.0%
!! GTTTGATAATTGATGCTATA+TGG + chr1_2:59111825-59111844 Msa0080750:intron 25.0%
!! GGTTTCTTTAATTTATGTAC+CGG + chr1_2:59111846-59111865 Msa0080750:intron 25.0%
! TCATAAATCATGATATTGTC+CGG - chr1_2:59111868-59111887 None:intergenic 25.0%
! AAATTTCAGAAAACAATGCA+GGG - chr1_2:59111987-59112006 None:intergenic 25.0%
! TAAATTTCAGAAAACAATGC+AGG - chr1_2:59111988-59112007 None:intergenic 25.0%
!!! GTTTTGATAACGAGTTTTAA+GGG + chr1_2:59112061-59112080 Msa0080750:intron 25.0%
! AATTCTGCAACTGAATTATA+AGG - chr1_2:59112446-59112465 None:intergenic 25.0%
! TGATATACTAGAGAAATCAT+TGG + chr1_2:59112574-59112593 Msa0080750:CDS 25.0%
! GATATACTAGAGAAATCATT+GGG + chr1_2:59112575-59112594 Msa0080750:CDS 25.0%
!! TTTTATATGTGATGTGTAGA+TGG + chr1_2:59113079-59113098 Msa0080750:intron 25.0%
!! TATTTAATGGTGTCAACTTT+GGG + chr1_2:59113372-59113391 Msa0080750:CDS 25.0%
! ATTAAAATATAGACTCACCA+TGG - chr1_2:59113486-59113505 None:intergenic 25.0%
! AATTAAATGTAACCACATGT+CGG - chr1_2:59113618-59113637 None:intergenic 25.0%
! TTAGTGGCATTATTTCATTA+TGG + chr1_2:59113775-59113794 Msa0080750:intron 25.0%
! TTATGGCATTCTTAATTCTT+AGG + chr1_2:59113792-59113811 Msa0080750:intron 25.0%
! TTGCTTAATATGAATATGAC+AGG + chr1_2:59114288-59114307 Msa0080750:three_prime_UTR 25.0%
! AGGGAAAGAAAATATGTTAT+AGG + chr1_2:59114462-59114481 Msa0080750:intron 25.0%
! ATCTATATTCAGCTATTATG+TGG + chr1_2:59114650-59114669 Msa0080750:intron 25.0%
!! TTAAGTTATTGAAGTATCTG+AGG + chr1_2:59115021-59115040 Msa0080750:intron 25.0%
!!! TGTAGTTTGTAATTTTAGGT+TGG + chr1_2:59115059-59115078 Msa0080750:intron 25.0%
! TAGGACTAAAATCAATCTAT+AGG - chr1_2:59115200-59115219 None:intergenic 25.0%
!!! TAGATTGATTTTAGTCCTAA+AGG + chr1_2:59115201-59115220 Msa0080750:intron 25.0%
! CAAATTCTTGTAATTCCTTT+AGG - chr1_2:59115219-59115238 None:intergenic 25.0%
! ATAGGACAGAAAAAATTCTT+AGG - chr1_2:59115261-59115280 None:intergenic 25.0%
!!! ATTTTTTCTGTCCTATTTGA+AGG + chr1_2:59115265-59115284 Msa0080750:intron 25.0%
!! AAGAGTCTGAATATTTGTTT+TGG + chr1_2:59115297-59115316 Msa0080750:intron 25.0%
! CATAGTTGCATTTCTTTAAT+GGG + chr1_2:59115328-59115347 Msa0080750:intron 25.0%
! ATAGTTGCATTTCTTTAATG+GGG + chr1_2:59115329-59115348 Msa0080750:intron 25.0%
! ATGTTAGAGATGTAATCATA+GGG - chr1_2:59115400-59115419 None:intergenic 25.0%
! TATGTTAGAGATGTAATCAT+AGG - chr1_2:59115401-59115420 None:intergenic 25.0%
! TTCTTGATATTACATCCTAT+TGG - chr1_2:59115475-59115494 None:intergenic 25.0%
! AAGGGATTATGATTACATTA+AGG + chr1_2:59115775-59115794 Msa0080750:intron 25.0%
! TTTCAAATTGAAGAAGATCT+TGG + chr1_2:59115914-59115933 Msa0080750:three_prime_UTR 25.0%
! TTGTAGTTCTTCATTGATAA+GGG - chr1_2:59116032-59116051 None:intergenic 25.0%
!! ATGTTGTATAACTTCTGTTT+TGG + chr1_2:59116328-59116347 Msa0080750:three_prime_UTR 25.0%
TTCTTCTTCATCATCAATCA+AGG + chr1_2:59111533-59111552 Msa0080750:CDS 30.0%
AAGGAAATCAAAAAGGAAGA+AGG - chr1_2:59111627-59111646 None:intergenic 30.0%
TGAGTTTGTGAGATGTTAAT+CGG + chr1_2:59111777-59111796 Msa0080750:intron 30.0%
! TTTGTTGTGGCTCATATTTA+CGG + chr1_2:59111932-59111951 Msa0080750:intron 30.0%
!!! GGTTTTGATAACGAGTTTTA+AGG + chr1_2:59112060-59112079 Msa0080750:intron 30.0%
!!! TGATTGTTTTGATATCGTCA+TGG - chr1_2:59112149-59112168 None:intergenic 30.0%
ATTCAATGAAGATAGTGAAG+AGG + chr1_2:59112169-59112188 Msa0080750:intron 30.0%
AGAAATCCTTAACAATGGTA+AGG + chr1_2:59112244-59112263 Msa0080750:CDS 30.0%
CTCTCATAATTCAAATCCTT+CGG - chr1_2:59112356-59112375 None:intergenic 30.0%
TCAAATGATGTGATTGAAAC+CGG + chr1_2:59112395-59112414 Msa0080750:CDS 30.0%
!!! ATTTTCTGCTGATTCAGTAA+AGG + chr1_2:59112463-59112482 Msa0080750:CDS 30.0%
!! AGTTTCTGATGATTTGGTTA+AGG + chr1_2:59112508-59112527 Msa0080750:CDS 30.0%
TGTTAGAATATCGAGTTTGA+AGG + chr1_2:59112670-59112689 Msa0080750:CDS 30.0%
! TAGCAGATAAATTCAGGTTA+GGG + chr1_2:59113032-59113051 Msa0080750:intron 30.0%
TAGATGGTTATAAAGCAGAT+GGG + chr1_2:59113095-59113114 Msa0080750:intron 30.0%
TTTGAACGCGAATAAATTAC+CGG - chr1_2:59113230-59113249 None:intergenic 30.0%
TTCGCGTTCAAATTTAGAAA+AGG + chr1_2:59113238-59113257 Msa0080750:intron 30.0%
! TGTTTGGCCTTTGTATTTAA+TGG + chr1_2:59113359-59113378 Msa0080750:CDS 30.0%
GTTGACACCATTAAATACAA+AGG - chr1_2:59113369-59113388 None:intergenic 30.0%
! GTATTTAATGGTGTCAACTT+TGG + chr1_2:59113371-59113390 Msa0080750:CDS 30.0%
! ATTTAATGGTGTCAACTTTG+GGG + chr1_2:59113373-59113392 Msa0080750:CDS 30.0%
GATCAAAGCAGATTAAAACA+TGG - chr1_2:59113445-59113464 None:intergenic 30.0%
AAAACATTGTAGCAAAGGTT+TGG - chr1_2:59113716-59113735 None:intergenic 30.0%
GAAACAAAACATTGTAGCAA+AGG - chr1_2:59113721-59113740 None:intergenic 30.0%
TCAATGAACTATATTGATGC+AGG + chr1_2:59114034-59114053 Msa0080750:intron 30.0%
TCAATAACAATTAGCTCCTA+AGG - chr1_2:59114089-59114108 None:intergenic 30.0%
TTCACTAAGATGGAATCATT+CGG + chr1_2:59114154-59114173 Msa0080750:three_prime_UTR 30.0%
GATTCATAACTATTGTTTGC+TGG + chr1_2:59114222-59114241 Msa0080750:three_prime_UTR 30.0%
ATATGAATATGACAGGTTAG+TGG + chr1_2:59114295-59114314 Msa0080750:three_prime_UTR 30.0%
TATGAATATGACAGGTTAGT+GGG + chr1_2:59114296-59114315 Msa0080750:three_prime_UTR 30.0%
TTATAAGGTTGCAAACTAGA+AGG + chr1_2:59114442-59114461 Msa0080750:intron 30.0%
TATAAGGTTGCAAACTAGAA+GGG + chr1_2:59114443-59114462 Msa0080750:intron 30.0%
!! ATTAATTTGCCTCGAAAAAC+CGG + chr1_2:59114571-59114590 Msa0080750:intron 30.0%
TCATTTGTCATGATTGGTAA+TGG - chr1_2:59114694-59114713 None:intergenic 30.0%
GATATCTCATTTGTCATGAT+TGG - chr1_2:59114700-59114719 None:intergenic 30.0%
TTGCAGATATCTCATATTGA+TGG - chr1_2:59114741-59114760 None:intergenic 30.0%
! CAATCTATAGGTTGTTTCAA+TGG - chr1_2:59115188-59115207 None:intergenic 30.0%
TTCGTATGAATCCTTCAAAT+AGG - chr1_2:59115279-59115298 None:intergenic 30.0%
GCATAGTTGCATTTCTTTAA+TGG + chr1_2:59115327-59115346 Msa0080750:intron 30.0%
TGTTTACATGGTAAGCTTAA+AGG + chr1_2:59115363-59115382 Msa0080750:intron 30.0%
! TTGGGTGTATGAATTTTCTA+AGG + chr1_2:59115617-59115636 Msa0080750:intron 30.0%
TGATTACATTAAGGATCTCA+AGG + chr1_2:59115784-59115803 Msa0080750:intron 30.0%
CTCAAGGAGGATTTAAATAA+TGG + chr1_2:59115800-59115819 Msa0080750:intron 30.0%
AAAATCAAAGCAAGAAAAGG+TGG - chr1_2:59115875-59115894 None:intergenic 30.0%
AGCAAAATCAAAGCAAGAAA+AGG - chr1_2:59115878-59115897 None:intergenic 30.0%
! TCTTATGTATTTCTACGACT+TGG - chr1_2:59115950-59115969 None:intergenic 30.0%
AAGTCGTAGAAATACATAAG+AGG + chr1_2:59115949-59115968 Msa0080750:three_prime_UTR 30.0%
GTTGTAGTTCTTCATTGATA+AGG - chr1_2:59116033-59116052 None:intergenic 30.0%
TATGAAACAGTTCAGAGTTT+AGG + chr1_2:59116238-59116257 Msa0080750:three_prime_UTR 30.0%
!!! TTCTGTTTTGGTTTCGTTTA+TGG + chr1_2:59116340-59116359 Msa0080750:three_prime_UTR 30.0%
GAAAAAGAACATCGCAGAAA+AGG - chr1_2:59111591-59111610 None:intergenic 35.0%
TCCTTCTTTCTTTGTGTGAT+TGG + chr1_2:59111642-59111661 Msa0080750:intron 35.0%
CCTTCTTTCTTTGTGTGATT+GGG + chr1_2:59111643-59111662 Msa0080750:intron 35.0%
!!! ATTTAGGTTGCATTTTGGCT+TGG + chr1_2:59111736-59111755 Msa0080750:intron 35.0%
TTGTTGTGGCTCATATTTAC+GGG + chr1_2:59111933-59111952 Msa0080750:intron 35.0%
TTGACGTCAATTGATGAGAA+AGG + chr1_2:59112093-59112112 Msa0080750:intron 35.0%
ATTGATGAGAAAGGAAGTGA+CGG + chr1_2:59112102-59112121 Msa0080750:intron 35.0%
ATTGTTAAGGATTTCTTCCG+AGG - chr1_2:59112240-59112259 None:intergenic 35.0%
TCGGAAGAAATCCTTAACAA+TGG + chr1_2:59112239-59112258 Msa0080750:CDS 35.0%
ATCCTTAACAATGGTAAGGT+TGG + chr1_2:59112248-59112267 Msa0080750:CDS 35.0%
!! AAGGTGTTGTTGAGATAGAA+TGG + chr1_2:59112291-59112310 Msa0080750:CDS 35.0%
!! AGGTGTTGTTGAGATAGAAT+GGG + chr1_2:59112292-59112311 Msa0080750:CDS 35.0%
TATGAGAGTCGAAAGAACAA+TGG + chr1_2:59112368-59112387 Msa0080750:CDS 35.0%
!! TTTTGTGTTATTCGCAGTTC+CGG - chr1_2:59112417-59112436 None:intergenic 35.0%
TGCAGAAGTTTCTGATGATT+TGG + chr1_2:59112502-59112521 Msa0080750:CDS 35.0%
GATATTCTAACAACCTCATC+AGG - chr1_2:59112662-59112681 None:intergenic 35.0%
TCCTATTCCTGAATCTACTA+AGG + chr1_2:59112745-59112764 Msa0080750:CDS 35.0%
CCTATTCCTGAATCTACTAA+GGG + chr1_2:59112746-59112765 Msa0080750:CDS 35.0%
! CTAGCAGATAAATTCAGGTT+AGG + chr1_2:59113031-59113050 Msa0080750:intron 35.0%
GTAGATGGTTATAAAGCAGA+TGG + chr1_2:59113094-59113113 Msa0080750:intron 35.0%
TTGGCATTTGCATTCATTCT+TGG + chr1_2:59113131-59113150 Msa0080750:CDS 35.0%
TTTGCATTCATTCTTGGAAC+AGG + chr1_2:59113137-59113156 Msa0080750:CDS 35.0%
TTGAACGCGAATAAATTACC+GGG - chr1_2:59113229-59113248 None:intergenic 35.0%
TTTACTTTCAGTCTTCTCCA+TGG + chr1_2:59113466-59113485 Msa0080750:intron 35.0%
! AACTTCATACTTGTTACTCG+AGG - chr1_2:59113743-59113762 None:intergenic 35.0%
!! TGGTGGATTCATTGGAATTT+GGG + chr1_2:59113864-59113883 Msa0080750:CDS 35.0%
GAACTATATTGATGCAGGAT+TGG + chr1_2:59114039-59114058 Msa0080750:intron 35.0%
GATTCCATCTTAGTGAAATC+TGG - chr1_2:59114151-59114170 None:intergenic 35.0%
!! TTTCCTGAAGAAGTGTTTCT+AGG + chr1_2:59114906-59114925 Msa0080750:intron 35.0%
!! TGTTTCTAGGTCTACAATGA+TGG + chr1_2:59114919-59114938 Msa0080750:intron 35.0%
! AGTATCTAAAACCCTTCAGA+TGG - chr1_2:59114997-59115016 None:intergenic 35.0%
!!! ATTTTAGGTTGGATCCTATC+AGG + chr1_2:59115070-59115089 Msa0080750:intron 35.0%
!!! AAGCCAGTTTTGTTTCCAAT+AGG + chr1_2:59115457-59115476 Msa0080750:intron 35.0%
CATCCTATTGGAAACAAAAC+TGG - chr1_2:59115463-59115482 None:intergenic 35.0%
TAGTTGAGAGCAAAACAATG+AGG - chr1_2:59115551-59115570 None:intergenic 35.0%
AAAATAGTATGGTACCTGTC+TGG + chr1_2:59115661-59115680 Msa0080750:intron 35.0%
! ATTTAGGGCTTTCAATGTCA+AGG + chr1_2:59115756-59115775 Msa0080750:intron 35.0%
! TTTAGGGCTTTCAATGTCAA+GGG + chr1_2:59115757-59115776 Msa0080750:intron 35.0%
TTACATTAAGGATCTCAAGG+AGG + chr1_2:59115787-59115806 Msa0080750:intron 35.0%
AATTGAAGAAGATCTTGGAC+TGG + chr1_2:59115919-59115938 Msa0080750:three_prime_UTR 35.0%
! GAAATAGACGACTCTAGAAA+TGG - chr1_2:59115997-59116016 None:intergenic 35.0%
TAGTTCTTCATTGATAAGGG+TGG - chr1_2:59116029-59116048 None:intergenic 35.0%
AACTACAACCATGAGAAAAC+AGG + chr1_2:59116044-59116063 Msa0080750:three_prime_UTR 35.0%
CCCAATCACACAAAGAAAGA+AGG - chr1_2:59111646-59111665 None:intergenic 40.0%
TGTTGTGGCTCATATTTACG+GGG + chr1_2:59111934-59111953 Msa0080750:intron 40.0%
CAATGAAGATAGTGAAGAGG+TGG + chr1_2:59112172-59112191 Msa0080750:intron 40.0%
CACCAACCTTACCATTGTTA+AGG - chr1_2:59112253-59112272 None:intergenic 40.0%
!! GGTGTTGTTGAGATAGAATG+GGG + chr1_2:59112293-59112312 Msa0080750:CDS 40.0%
!! TTCTGCTGATTCAGTAAAGG+AGG + chr1_2:59112466-59112485 Msa0080750:CDS 40.0%
!! TCTGCTGATTCAGTAAAGGA+GGG + chr1_2:59112467-59112486 Msa0080750:CDS 40.0%
AGTACAAGTCTTACCTGATG+AGG + chr1_2:59112646-59112665 Msa0080750:CDS 40.0%
CCCTTAGTAGATTCAGGAAT+AGG - chr1_2:59112749-59112768 None:intergenic 40.0%
TCTACACCCTTAGTAGATTC+AGG - chr1_2:59112755-59112774 None:intergenic 40.0%
!! TGCAGAAAGCTCTGAAAATC+AGG + chr1_2:59112796-59112815 Msa0080750:CDS 40.0%
AATTATTTACATGCAGCCCC+CGG + chr1_2:59112939-59112958 Msa0080750:intron 40.0%
CTGAATTTATCTGCTAGAGC+CGG - chr1_2:59113028-59113047 None:intergenic 40.0%
! TTTTCAACCCTCTCAAAGAG+TGG + chr1_2:59113279-59113298 Msa0080750:intron 40.0%
! GTAAGTTCCACTCTTTGAGA+GGG - chr1_2:59113289-59113308 None:intergenic 40.0%
TGTAAGTTCCACTCTTTGAG+AGG - chr1_2:59113290-59113309 None:intergenic 40.0%
GTTGAGTAAGTGCTACAAAC+TGG - chr1_2:59113331-59113350 None:intergenic 40.0%
TACAAAGGCCAAACAGTTCA+GGG - chr1_2:59113354-59113373 None:intergenic 40.0%
ATACAAAGGCCAAACAGTTC+AGG - chr1_2:59113355-59113374 None:intergenic 40.0%
ATGGATGAAGTTGCATACCA+TGG - chr1_2:59113426-59113445 None:intergenic 40.0%
TATAACGCACAAACAGACAC+CGG - chr1_2:59113682-59113701 None:intergenic 40.0%
!!! CTACTTATTTTGTCAACCGC+TGG + chr1_2:59113844-59113863 Msa0080750:CDS 40.0%
AATTCCAATGAATCCACCAG+CGG - chr1_2:59113863-59113882 None:intergenic 40.0%
!! CTGGTGGATTCATTGGAATT+TGG + chr1_2:59113863-59113882 Msa0080750:CDS 40.0%
TCCAAGACACTTGCAACATT+TGG + chr1_2:59113996-59114015 Msa0080750:intron 40.0%
TCCAAATGTTGCAAGTGTCT+TGG - chr1_2:59114000-59114019 None:intergenic 40.0%
TATTGATGCAGGATTGGAAC+TGG + chr1_2:59114045-59114064 Msa0080750:intron 40.0%
!! TGAAGAATTTGCTGACACTC+TGG + chr1_2:59114183-59114202 Msa0080750:three_prime_UTR 40.0%
! AATATGACAGGTTAGTGGGT+TGG + chr1_2:59114300-59114319 Msa0080750:three_prime_UTR 40.0%
!! AATCCTAAACCGGTTTTTCG+AGG - chr1_2:59114583-59114602 None:intergenic 40.0%
AGACCTAGAAACACTTCTTC+AGG - chr1_2:59114912-59114931 None:intergenic 40.0%
AAAACCCTTCAGATGGCAAA+TGG - chr1_2:59114990-59115009 None:intergenic 40.0%
!! AGGAGTGTGATTTTCCTGAT+AGG - chr1_2:59115087-59115106 None:intergenic 40.0%
AAAATGGACAGAAGCTCAAG+AGG - chr1_2:59115107-59115126 None:intergenic 40.0%
CAGAGAGCAAACAGGAAAAA+TGG - chr1_2:59115123-59115142 None:intergenic 40.0%
AACAATGACAGAGAGCAAAC+AGG - chr1_2:59115131-59115150 None:intergenic 40.0%
CATTTCTTTAATGGGGTCTC+TGG + chr1_2:59115336-59115355 Msa0080750:intron 40.0%
TCTGGATAGACGGTTGAATA+TGG + chr1_2:59115679-59115698 Msa0080750:intron 40.0%
GATAGACGGTTGAATATGGA+TGG + chr1_2:59115683-59115702 Msa0080750:intron 40.0%
ACGGTTGAATATGGATGGTT+TGG + chr1_2:59115688-59115707 Msa0080750:intron 40.0%
CGGTTGAATATGGATGGTTT+GGG + chr1_2:59115689-59115708 Msa0080750:intron 40.0%
GGTTGAATATGGATGGTTTG+GGG + chr1_2:59115690-59115709 Msa0080750:intron 40.0%
! GTTGAATATGGATGGTTTGG+GGG + chr1_2:59115691-59115710 Msa0080750:intron 40.0%
! TTGAATATGGATGGTTTGGG+GGG + chr1_2:59115692-59115711 Msa0080750:intron 40.0%
!! ACGACTCTAGAAATGGACTA+TGG - chr1_2:59115990-59116009 None:intergenic 40.0%
! TCTTTGCACCTGTTTTCTCA+TGG - chr1_2:59116055-59116074 None:intergenic 40.0%
TTTAAGTGGCAGCAGCAAAA+AGG - chr1_2:59116207-59116226 None:intergenic 40.0%
TGAAGATAGTGAAGAGGTGG+AGG + chr1_2:59112175-59112194 Msa0080750:intron 45.0%
TTTGCAACAACAGCAGCTGA+TGG - chr1_2:59112215-59112234 None:intergenic 45.0%
TGCTGTTGTTGCAAAGTCCT+CGG + chr1_2:59112220-59112239 Msa0080750:CDS 45.0%
AGAATGGGGTATGAAGTCTG+AGG + chr1_2:59112307-59112326 Msa0080750:CDS 45.0%
!! TATGAAGTCTGAGGAGCGTT+TGG + chr1_2:59112316-59112335 Msa0080750:CDS 45.0%
! GGAGAAAATTGACTCTCCGA+AGG + chr1_2:59112337-59112356 Msa0080750:CDS 45.0%
GAGAGTCGAAAGAACAATGG+CGG + chr1_2:59112371-59112390 Msa0080750:CDS 45.0%
! TCTTGCTGTGAAGAGAAGTG+AGG + chr1_2:59112619-59112638 Msa0080750:CDS 45.0%
TTTGAAGGAACCCGAGACTA+GGG + chr1_2:59112685-59112704 Msa0080750:CDS 45.0%
TTCAGAGCTTTCTGCAGCAT+TGG - chr1_2:59112792-59112811 None:intergenic 45.0%
GGCCTGTTTGATGTTCTATC+CGG + chr1_2:59113006-59113025 Msa0080750:intron 45.0%
AGCCGGATAGAACATCAAAC+AGG - chr1_2:59113011-59113030 None:intergenic 45.0%
! CGGCTCTAGCAGATAAATTC+AGG + chr1_2:59113026-59113045 Msa0080750:intron 45.0%
GGTTATAAAGCAGATGGGCA+TGG + chr1_2:59113100-59113119 Msa0080750:CDS 45.0%
CTTGGAACAGGATTGCACTT+TGG + chr1_2:59113149-59113168 Msa0080750:CDS 45.0%
TCCTGCACCTCATTAGAGTT+GGG + chr1_2:59113201-59113220 Msa0080750:CDS 45.0%
TACTCAACCCCTGAACTGTT+TGG + chr1_2:59113343-59113362 Msa0080750:CDS 45.0%
ACAAAGGCCAAACAGTTCAG+GGG - chr1_2:59113353-59113372 None:intergenic 45.0%
TGCATATTCAGCCTTCTCCA+TGG + chr1_2:59113406-59113425 Msa0080750:CDS 45.0%
GAAGTTGCATACCATGGAGA+AGG - chr1_2:59113420-59113439 None:intergenic 45.0%
ACGTCTTTGATGCGAAGTGT+CGG - chr1_2:59113563-59113582 None:intergenic 45.0%
CTTCGCATCAAAGACGTGTT+TGG + chr1_2:59113566-59113585 Msa0080750:intron 45.0%
!! CAACATGTCAGTGTCGTTTC+CGG + chr1_2:59113660-59113679 Msa0080750:intron 45.0%
GGTGTCTGTTTGTGCGTTAT+AGG + chr1_2:59113681-59113700 Msa0080750:intron 45.0%
!!! CTTATTTTGTCAACCGCTGG+TGG + chr1_2:59113847-59113866 Msa0080750:CDS 45.0%
!! ACGAGTCTAAGAGCATTTGC+TGG + chr1_2:59113904-59113923 Msa0080750:CDS 45.0%
TAGCTCCTAAGGAATTCCCA+TGG - chr1_2:59114078-59114097 None:intergenic 45.0%
AGTGTTGTGATGACAGGAGT+GGG + chr1_2:59114124-59114143 Msa0080750:three_prime_UTR 45.0%
GGGTCCAGATTTCACTAAGA+TGG + chr1_2:59114144-59114163 Msa0080750:three_prime_UTR 45.0%
! TTGCCTCGAAAAACCGGTTT+AGG + chr1_2:59114577-59114596 Msa0080750:intron 45.0%
GAGTATACACTGCAAAGTCC+TGG + chr1_2:59114613-59114632 Msa0080750:intron 45.0%
ACTCACCATTTGCCATCTGA+AGG + chr1_2:59114982-59115001 Msa0080750:intron 45.0%
CTCACCATTTGCCATCTGAA+GGG + chr1_2:59114983-59115002 Msa0080750:intron 45.0%
GTCTCTGGTGTCTGTTTACA+TGG + chr1_2:59115351-59115370 Msa0080750:intron 45.0%
ATGGTACCTGTCTGGATAGA+CGG + chr1_2:59115669-59115688 Msa0080750:intron 45.0%
ATTCAACCGTCTATCCAGAC+AGG - chr1_2:59115678-59115697 None:intergenic 45.0%
!! ATAAATTAAATTTAGATATT+GGG + chr1_2:59115599-59115618 Msa0080750:intron 5.0%
! TTACGGGGAAGTGCAGTTCA+AGG + chr1_2:59111949-59111968 Msa0080750:intron 50.0%
AACACCTTCCTTTCCACCCT+CGG - chr1_2:59112279-59112298 None:intergenic 50.0%
GCTTTGCATCTCAGAGACAG+AGG - chr1_2:59112540-59112559 None:intergenic 50.0%
!! GTCTCTGAGATGCAAAGCGA+AGG + chr1_2:59112542-59112561 Msa0080750:CDS 50.0%
ATCATTGGGCTCTCCAGTTG+CGG + chr1_2:59112589-59112608 Msa0080750:CDS 50.0%
GCAAGATCAGTTTCCGCAAC+TGG - chr1_2:59112605-59112624 None:intergenic 50.0%
GTTTGAAGGAACCCGAGACT+AGG + chr1_2:59112684-59112703 Msa0080750:CDS 50.0%
CCGTCAAATTCCCTAGTCTC+GGG - chr1_2:59112698-59112717 None:intergenic 50.0%
CCCGAGACTAGGGAATTTGA+CGG + chr1_2:59112695-59112714 Msa0080750:CDS 50.0%
CCCGTCAAATTCCCTAGTCT+CGG - chr1_2:59112699-59112718 None:intergenic 50.0%
CCGAGACTAGGGAATTTGAC+GGG + chr1_2:59112696-59112715 Msa0080750:CDS 50.0%
GACGTCTTATGCACCATAGG+CGG - chr1_2:59112970-59112989 None:intergenic 50.0%
CAGGACGTCTTATGCACCAT+AGG - chr1_2:59112973-59112992 None:intergenic 50.0%
CTATGGTGCATAAGACGTCC+TGG + chr1_2:59112971-59112990 Msa0080750:intron 50.0%
!! ACGTCCTGGTTGAGTTGATG+TGG + chr1_2:59112985-59113004 Msa0080750:intron 50.0%
AAGCAGATGGGCATGGTTCT+TGG + chr1_2:59113107-59113126 Msa0080750:CDS 50.0%
GATGGGCATGGTTCTTGGAT+TGG + chr1_2:59113112-59113131 Msa0080750:CDS 50.0%
GTCCTGCACCTCATTAGAGT+TGG + chr1_2:59113200-59113219 Msa0080750:CDS 50.0%
TCCCAACTCTAATGAGGTGC+AGG - chr1_2:59113205-59113224 None:intergenic 50.0%
CCTCATTAGAGTTGGGATCC+CGG + chr1_2:59113208-59113227 Msa0080750:CDS 50.0%
CGGAAACGACACTGACATGT+TGG - chr1_2:59113662-59113681 None:intergenic 50.0%
!! TCAACCGCTGGTGGATTCAT+TGG + chr1_2:59113856-59113875 Msa0080750:CDS 50.0%
!! GAGCATTTGCTGGCTTCTTG+AGG + chr1_2:59113914-59113933 Msa0080750:CDS 50.0%
TGCAGGATTGGAACTGGATC+AGG + chr1_2:59114051-59114070 Msa0080750:intron 50.0%
TTGGAACTGGATCAGGACCA+TGG + chr1_2:59114058-59114077 Msa0080750:CDS 50.0%
TGGAACTGGATCAGGACCAT+GGG + chr1_2:59114059-59114078 Msa0080750:CDS 50.0%
CAGGACCATGGGAATTCCTT+AGG + chr1_2:59114070-59114089 Msa0080750:CDS 50.0%
! GCAGTGAGTGTTGTGATGAC+AGG + chr1_2:59114118-59114137 Msa0080750:three_prime_UTR 50.0%
! GAGTGTTGTGATGACAGGAG+TGG + chr1_2:59114123-59114142 Msa0080750:three_prime_UTR 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG + chr1_2:59114311-59114330 Msa0080750:three_prime_UTR 50.0%
!! TAGTGGGTTGGACAGAAGCT+GGG + chr1_2:59114312-59114331 Msa0080750:three_prime_UTR 50.0%
AGAAGCTGGGAAAAACCACC+TGG + chr1_2:59114325-59114344 Msa0080750:three_prime_UTR 50.0%
ATGAGTTTAGCAGCCACACC+AGG - chr1_2:59114346-59114365 None:intergenic 50.0%
TACACTGCAAAGTCCTGGTG+AGG + chr1_2:59114618-59114637 Msa0080750:intron 50.0%
ACACTGCAAAGTCCTGGTGA+GGG + chr1_2:59114619-59114638 Msa0080750:intron 50.0%
AGATGTTTGTGACCCTCACC+AGG - chr1_2:59114634-59114653 None:intergenic 50.0%
TGCAAGTTGCACACTTCAGC+TGG + chr1_2:59114756-59114775 Msa0080750:intron 50.0%
!! TGGTAAGGTTGGTGAAGCCG+AGG + chr1_2:59112259-59112278 Msa0080750:CDS 55.0%
!! GGTAAGGTTGGTGAAGCCGA+GGG + chr1_2:59112260-59112279 Msa0080750:CDS 55.0%
TGTGCGCTCGTTTGTGTGTC+AGG - chr1_2:59112837-59112856 None:intergenic 55.0%
CAGGCCACATCAACTCAACC+AGG - chr1_2:59112992-59113011 None:intergenic 55.0%
CCGGGATCCCAACTCTAATG+AGG - chr1_2:59113211-59113230 None:intergenic 55.0%
!! CCACATGTCGGTGTCGAACA+CGG - chr1_2:59113606-59113625 None:intergenic 55.0%
CTGGGAAAAACCACCTGGTG+TGG + chr1_2:59114330-59114349 Msa0080750:three_prime_UTR 55.0%
AGTTTAGCAGCCACACCAGG+TGG - chr1_2:59114343-59114362 None:intergenic 55.0%
!! AAGGTTGGTGAAGCCGAGGG+TGG + chr1_2:59112263-59112282 Msa0080750:CDS 60.0%
TGGTGAAGCCGAGGGTGGAA+AGG + chr1_2:59112268-59112287 Msa0080750:CDS 60.0%
GAAGCCGAGGGTGGAAAGGA+AGG + chr1_2:59112272-59112291 Msa0080750:CDS 60.0%
TGCACCATAGGCGGAGCTAC+CGG - chr1_2:59112961-59112980 None:intergenic 60.0%
CCGTGTTCGACACCGACATG+TGG + chr1_2:59113603-59113622 Msa0080750:intron 60.0%
ACCATAGGCGGAGCTACCGG+GGG - chr1_2:59112958-59112977 None:intergenic 65.0%
CACCATAGGCGGAGCTACCG+GGG - chr1_2:59112959-59112978 None:intergenic 65.0%
GCACCATAGGCGGAGCTACC+GGG - chr1_2:59112960-59112979 None:intergenic 65.0%
GCCCCCGGTAGCTCCGCCTA+TGG + chr1_2:59112954-59112973 Msa0080750:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59111530 59116365 59111530 ID=Msa0080750;Name=Msa0080750
chr1_2 mRNA 59111530 59116365 59111530 ID=Msa0080750-mRNA-1;Parent=Msa0080750;Name=Msa0080750-mRNA-1;_AED=0.07;_eAED=0.09;_QI=0|0.66|0.57|0.85|0.83|0.71|7|745|351
chr1_2 exon 59111530 59111554 59111530 ID=Msa0080750-mRNA-1:exon:19097;Parent=Msa0080750-mRNA-1
chr1_2 exon 59112180 59112817 59112180 ID=Msa0080750-mRNA-1:exon:19098;Parent=Msa0080750-mRNA-1
chr1_2 exon 59113098 59113229 59113098 ID=Msa0080750-mRNA-1:exon:19099;Parent=Msa0080750-mRNA-1
chr1_2 exon 59113332 59113427 59113332 ID=Msa0080750-mRNA-1:exon:19100;Parent=Msa0080750-mRNA-1
chr1_2 exon 59113814 59113935 59113814 ID=Msa0080750-mRNA-1:exon:19101;Parent=Msa0080750-mRNA-1
chr1_2 exon 59114056 59114385 59114056 ID=Msa0080750-mRNA-1:exon:19102;Parent=Msa0080750-mRNA-1
chr1_2 exon 59115908 59116365 59115908 ID=Msa0080750-mRNA-1:exon:19103;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59111530 59111554 59111530 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59112180 59112817 59112180 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59113098 59113229 59113098 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59113332 59113427 59113332 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59113814 59113935 59113814 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 CDS 59114056 59114098 59114056 ID=Msa0080750-mRNA-1:cds;Parent=Msa0080750-mRNA-1
chr1_2 three_prime_UTR 59114099 59114385 59114099 ID=Msa0080750-mRNA-1:three_prime_utr;Parent=Msa0080750-mRNA-1
chr1_2 three_prime_UTR 59115908 59116365 59115908 ID=Msa0080750-mRNA-1:three_prime_utr;Parent=Msa0080750-mRNA-1
Gene Sequence

>Msa0080750

CTGTTCTTCTTCATCATCAATCAAGATAGTGAAGAGGTGGAGGAGATTGAAGTCAAACCATCAGCTGCTGTTGTTGCAAAGTCCTCGGAAGAAATCCTTAACAATGGTAAGGTTGGTGAAGCCGAGGGTGGAAAGGAAGGTGTTGTTGAGATAGAATGGGGTATGAAGTCTGAGGAGCGTTTGGAGAAAATTGACTCTCCGAAGGATTTGAATTATGAGAGTCGAAAGAACAATGGCGGTTCAAATGATGTGATTGAAACCGGAACTGCGAATAACACAAAAGATGAACCTTATAATTCAGTTGCAGAATTTTCTGCTGATTCAGTAAAGGAGGGTGATAATTCAGTTGCAGAAGTTTCTGATGATTTGGTTAAGGCTGTGACCTCTGTCTCTGAGATGCAAAGCGAAGGTACTGTGAATGATATACTAGAGAAATCATTGGGCTCTCCAGTTGCGGAAACTGATCTTGCTGTGAAGAGAAGTGAGGATAAAGTACAAGTCTTACCTGATGAGGTTGTTAGAATATCGAGTTTGAAGGAACCCGAGACTAGGGAATTTGACGGGAAAGTATCTTCGTCAGTGTCTCAAAGTCCTATTCCTGAATCTACTAAGGGTGTAGAAAATGTTAAAGATTCCAATGCTGCAGAAAGCTCTGAAAATCAGATGGTTATAAAGCAGATGGGCATGGTTCTTGGATTGGCATTTGCATTCATTCTTGGAACAGGATTGCACTTTGGAGCTAAACTATTTACAAAAGATGTTGATGTCCTGCACCTCATTAGAGTTGGGATCCCGTTTGTAGCACTTACTCAACCCCTGAACTGTTTGGCCTTTGTATTTAATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTTATAGTAGCAATTATTAGCATAATTTGTCTACTTATTTTGTCAACCGCTGGTGGATTCATTGGAATTTGGGTTGTTTTGACTATTTATACGAGTCTAAGAGCATTTGCTGGCTTCTTGAGGATTGGAACTGGATCAGGACCATGGGAATTCCTTAGGAGCTAA
Protein sequence

>Msa0080750

LFFFIINQDSEEVEEIEVKPSAAVVAKSSEEILNNGKVGEAEGGKEGVVEIEWGMKSEERLEKIDSPKDLNYESRKNNGGSNDVIETGTANNTKDEPYNSVAEFSADSVKEGDNSVAEVSDDLVKAVTSVSEMQSEGTVNDILEKSLGSPVAETDLAVKRSEDKVQVLPDEVVRISSLKEPETREFDGKVSSSVSQSPIPESTKGVENVKDSNAAESSENQMVIKQMGMVLGLAFAFILGTGLHFGAKLFTKDVDVLHLIRVGIPFVALTQPLNCLAFVFNGVNFGASDFAYSAFSMVIVAIISIICLLILSTAGGFIGIWVVLTIYTSLRAFAGFLRIGTGSGPWEFLRS*