Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029120 | sp|Q39089|PAC_ARATH | 67.823 | 317 | 84 | 6 | 16 | 318 | 1 | 313 | 1.94e-115 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029120 | G7I2K5 | 96.541 | 318 | 11 | 0 | 1 | 318 | 3 | 320 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029120 | Msa0082470 | 0.822391 | 2.428715e-53 | -8.615850e-47 |
| Msa0029120 | Msa0183370 | 0.803784 | 2.955250e-49 | -8.615850e-47 |
| Msa0029120 | Msa0358170 | 0.814617 | 1.406683e-51 | -8.615850e-47 |
| Msa0029120 | Msa0472740 | 0.800086 | 1.699540e-48 | -8.615850e-47 |
| Msa0029120 | Msa1111630 | 0.802887 | 4.532058e-49 | -8.615850e-47 |
| Msa0029120 | Msa1167170 | 0.804077 | 2.567895e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029120 | MtrunA17_Chr1g0185851 | 96.541 | 318 | 11 | 0 | 1 | 318 | 3 | 320 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029120 | AT2G48120.1 | 67.823 | 317 | 84 | 6 | 16 | 318 | 1 | 313 | 1.97e-116 | 338 |
| Msa0029120 | AT2G48120.2 | 65.931 | 317 | 84 | 7 | 16 | 318 | 1 | 307 | 7.73e-109 | 319 |
Find 83 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTAGGCATGACAATTT+AGG | 0.217139 | 1_1:-54313688 | Msa0029120:three_prime_UTR |
| AAGAGAGAGAAGTGGAGGTT+AGG | 0.318785 | 1_1:+54318802 | None:intergenic |
| AGAGAGAGAAGTGGAGGTTA+GGG | 0.333651 | 1_1:+54318803 | None:intergenic |
| TTTAAGAAGATGTGTCAATA+AGG | 0.343769 | 1_1:-54318617 | Msa0029120:CDS |
| GTGAGACAAATCAAGCAAAA+AGG | 0.358073 | 1_1:-54318869 | Msa0029120:five_prime_UTR |
| AGTAGAAGCTCTACTAGATT+TGG | 0.362994 | 1_1:-54313878 | Msa0029120:CDS |
| CTCACTCACTCATTTCTTTG+TGG | 0.380723 | 1_1:-54318841 | Msa0029120:five_prime_UTR |
| AAGGAAGAGGTGCTTCTAGA+AGG | 0.394925 | 1_1:-54318592 | Msa0029120:CDS |
| TCACTCACTCATTTCTTTGT+GGG | 0.404033 | 1_1:-54318840 | Msa0029120:five_prime_UTR |
| ATATCAAATGACTCAAATCC+AGG | 0.411113 | 1_1:+54314488 | None:intergenic |
| AAAATACAGGACCATCCATT+TGG | 0.426100 | 1_1:+54313570 | None:intergenic |
| GCAAGACGTTCGGTCGGAAC+AGG | 0.428212 | 1_1:-54313986 | Msa0029120:CDS |
| AATGTAGGCATGACAATTTA+GGG | 0.429658 | 1_1:-54313687 | Msa0029120:three_prime_UTR |
| CACCTATTTACAGGATGAAA+AGG | 0.437281 | 1_1:-54315205 | Msa0029120:intron |
| ATACAACCCGTGAAGCTACT+TGG | 0.438626 | 1_1:+54313736 | None:intergenic |
| TGCTATATGGATCCTCCCTT+GGG | 0.442722 | 1_1:+54314522 | None:intergenic |
| AAAGGATGCTATAAGAAGTC+TGG | 0.442751 | 1_1:-54315187 | Msa0029120:CDS |
| AAGATGTGTCAATAAGGAAA+AGG | 0.455841 | 1_1:-54318611 | Msa0029120:CDS |
| TGCTAATATATTAAAACAGC+AGG | 0.458418 | 1_1:-54313923 | Msa0029120:CDS |
| ATTTGGCCATTAGTTTGAAC+TGG | 0.463487 | 1_1:-54313861 | Msa0029120:CDS |
| TAGCTACCAGTTCAAACTAA+TGG | 0.463566 | 1_1:+54313855 | None:intergenic |
| ATGCTATATGGATCCTCCCT+TGG | 0.473549 | 1_1:+54314521 | None:intergenic |
| TTAGGGTGATGAGAATCTCT+TGG | 0.474941 | 1_1:-54313670 | Msa0029120:three_prime_UTR |
| ACATCTACCGTCTATCCAAA+TGG | 0.476502 | 1_1:-54313585 | Msa0029120:three_prime_UTR |
| ATGAATTGCTGCAAGACGTT+CGG | 0.477719 | 1_1:-54313996 | Msa0029120:CDS |
| GAGAAGGTGTTGTGGCAAGA+AGG | 0.482405 | 1_1:+54318757 | None:intergenic |
| TTGCAGTCCAAGTAGCTTCA+CGG | 0.488315 | 1_1:-54313743 | Msa0029120:three_prime_UTR |
| TGCAGTCCAAGTAGCTTCAC+GGG | 0.488385 | 1_1:-54313742 | Msa0029120:three_prime_UTR |
| TAGGGTGATGAGAATCTCTT+GGG | 0.489366 | 1_1:-54313669 | Msa0029120:three_prime_UTR |
| CACTCACTCATTTCTTTGTG+GGG | 0.491198 | 1_1:-54318839 | Msa0029120:five_prime_UTR |
| CATCACGCCGAGCAAGATCA+AGG | 0.493288 | 1_1:+54316824 | None:intergenic |
| GAGAAGTGGAGGTTAGGGAG+AGG | 0.495213 | 1_1:+54318808 | None:intergenic |
| GCGTCTTCGATGCAACTCCT+TGG | 0.495907 | 1_1:+54317321 | None:intergenic |
| TCATTGAGTAATCTCATCGC+AGG | 0.500918 | 1_1:+54314620 | None:intergenic |
| AGCCGCTGAAGAAGTAGAAG+AGG | 0.505834 | 1_1:-54317176 | Msa0029120:intron |
| ATTGAAGAGTATCGTGAAGT+TGG | 0.507618 | 1_1:-54317268 | Msa0029120:CDS |
| CTTGTTTGTATCAGCATCAC+GGG | 0.514765 | 1_1:-54314086 | Msa0029120:intron |
| CGGAAAGAAAGAGAGAGAAG+TGG | 0.515526 | 1_1:+54318794 | None:intergenic |
| TAAGATAGGAATGGCAAGCC+CGG | 0.518072 | 1_1:-54317357 | Msa0029120:intron |
| AATCTAGTAGAGCTTCTACT+TGG | 0.521112 | 1_1:+54313881 | None:intergenic |
| GTAAAATGACACACAAATGT+AGG | 0.536932 | 1_1:-54313702 | Msa0029120:three_prime_UTR |
| GTCTGGATCTGTTATACAGA+AGG | 0.537384 | 1_1:-54315170 | Msa0029120:CDS |
| AGAAGGTGTTGTGGCAAGAA+GGG | 0.541691 | 1_1:+54318758 | None:intergenic |
| TGAAGTTGGCATGCGGCTGA+AGG | 0.547056 | 1_1:-54317254 | Msa0029120:CDS |
| AGGAAGAGGTGCTTCTAGAA+GGG | 0.551744 | 1_1:-54318591 | Msa0029120:CDS |
| ATCAAATGACTCAAATCCAG+GGG | 0.552629 | 1_1:+54314490 | None:intergenic |
| TATTCAACACTATAAACTGT+AGG | 0.557966 | 1_1:+54313786 | None:intergenic |
| ATCAAGATATATTATGACAC+AGG | 0.564736 | 1_1:+54318906 | None:intergenic |
| TATCAAATGACTCAAATCCA+GGG | 0.569402 | 1_1:+54314489 | None:intergenic |
| TGTCAATAAGGAAAAGGAAG+AGG | 0.574293 | 1_1:-54318605 | Msa0029120:CDS |
| AAGACGCAGAGAGGAAGAAG+AGG | 0.575839 | 1_1:-54317305 | Msa0029120:CDS |
| ATTGAGGAAGCTGCTGAGAG+AGG | 0.576137 | 1_1:-54316886 | Msa0029120:CDS |
| CACAGCAGATATATTCGTAC+CGG | 0.578542 | 1_1:+54318943 | None:intergenic |
| TCTTGTTTGTATCAGCATCA+CGG | 0.580699 | 1_1:-54314087 | Msa0029120:intron |
| CACCTCTTCTACTTCTTCAG+CGG | 0.584322 | 1_1:+54317174 | None:intergenic |
| GGAATCGCCTTGATCTTGCT+CGG | 0.587486 | 1_1:-54316831 | Msa0029120:CDS |
| CATTGAGTAATCTCATCGCA+GGG | 0.591092 | 1_1:+54314621 | None:intergenic |
| AAGAAGATGTTAGAAAAGCA+AGG | 0.592506 | 1_1:-54317222 | Msa0029120:CDS |
| AAAGAAAGAGAGAGAAGTGG+AGG | 0.597434 | 1_1:+54318797 | None:intergenic |
| CCACGGAAACTAACCTGTGG+TGG | 0.600236 | 1_1:+54318701 | None:intergenic |
| CTACCGTCTATCCAAATGGA+TGG | 0.604825 | 1_1:-54313581 | Msa0029120:three_prime_UTR |
| GGGATATGGAGAAGGTGTTG+TGG | 0.606948 | 1_1:+54318749 | None:intergenic |
| ACATCATCATAGTAGTGAGA+AGG | 0.607348 | 1_1:+54318565 | None:intergenic |
| GGACCATCCATTTGGATAGA+CGG | 0.609110 | 1_1:+54313578 | None:intergenic |
| TCTGGATCTGTTATACAGAA+GGG | 0.611300 | 1_1:-54315169 | Msa0029120:CDS |
| GACTGAGATCTTGAAACGAG+AGG | 0.614776 | 1_1:-54314648 | Msa0029120:CDS |
| TACAACTGCAAATCCACCAC+AGG | 0.621318 | 1_1:-54318714 | Msa0029120:intron |
| ACTTCAAGTGATGGTCGCAA+TGG | 0.623785 | 1_1:+54314063 | None:intergenic |
| TCTGTTATACAGAAGGGTTG+AGG | 0.625946 | 1_1:-54315163 | Msa0029120:intron |
| GATTTGAGTTAATTGTACAG+TGG | 0.628519 | 1_1:-54313504 | Msa0029120:three_prime_UTR |
| TCATGATTGATACATTCCCA+AGG | 0.636948 | 1_1:-54314538 | Msa0029120:CDS |
| TTATCATCGACTTCAAGTGA+TGG | 0.637619 | 1_1:+54314054 | None:intergenic |
| ATGACACAGGGTTTAAGACA+CGG | 0.661579 | 1_1:+54318919 | None:intergenic |
| CATGATTGATACATTCCCAA+GGG | 0.662825 | 1_1:-54314537 | Msa0029120:CDS |
| TCAAGATATATTATGACACA+GGG | 0.666781 | 1_1:+54318907 | None:intergenic |
| GTTGCATCGAAGACGCAGAG+AGG | 0.670357 | 1_1:-54317314 | Msa0029120:CDS |
| ATTGCTGCAAGACGTTCGGT+CGG | 0.675176 | 1_1:-54313992 | Msa0029120:CDS |
| GATTGATACATTCCCAAGGG+AGG | 0.682890 | 1_1:-54314534 | Msa0029120:CDS |
| AGAAGGGATGAAGAATAAAG+CGG | 0.691906 | 1_1:+54318774 | None:intergenic |
| CCGGCAACGTGAAAAGACCA+AGG | 0.699550 | 1_1:-54317338 | Msa0029120:CDS |
| AGTATCGTGAAGTTGGCATG+CGG | 0.712651 | 1_1:-54317261 | Msa0029120:CDS |
| ATTGAGTAATCTCATCGCAG+GGG | 0.726511 | 1_1:+54314622 | None:intergenic |
| TCAAATGACTCAAATCCAGG+GGG | 0.733559 | 1_1:+54314491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTTTTTTGATTT+TGG | - | chr1_1:54313816-54313835 | Msa0029120:three_prime_UTR | 10.0% |
| !!! | AAATGTAATTATATTTTGTA+GGG | + | chr1_1:54314348-54314367 | None:intergenic | 10.0% |
| !!! | AAAATGTAATTATATTTTGT+AGG | + | chr1_1:54314349-54314368 | None:intergenic | 10.0% |
| !! | GTATATTATTGTATATAAAA+TGG | + | chr1_1:54316724-54316743 | None:intergenic | 10.0% |
| !! | AATAGAGTAAAAATTGTTTA+TGG | + | chr1_1:54314049-54314068 | None:intergenic | 15.0% |
| !! | AAAAAAAACACGATTAAATA+GGG | + | chr1_1:54314252-54314271 | None:intergenic | 15.0% |
| !! | AAAAAAAAACACGATTAAAT+AGG | + | chr1_1:54314253-54314272 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr1_1:54314317-54314336 | None:intergenic | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr1_1:54314318-54314337 | None:intergenic | 15.0% |
| !!! | AATGTGTGATTTTATTTTAT+AGG | - | chr1_1:54314504-54314523 | Msa0029120:CDS | 15.0% |
| !!! | ATGTGTGATTTTATTTTATA+GGG | - | chr1_1:54314505-54314524 | Msa0029120:CDS | 15.0% |
| !! | AATATTTATCATAACTAATC+AGG | + | chr1_1:54315409-54315428 | None:intergenic | 15.0% |
| !!! | AAAAAGCATAAATAAACAAA+AGG | + | chr1_1:54315475-54315494 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTTTAGGTAAT+TGG | - | chr1_1:54315680-54315699 | Msa0029120:intron | 15.0% |
| !! | ATTATTTGTCAAAAAAAAAG+TGG | + | chr1_1:54316899-54316918 | None:intergenic | 15.0% |
| !! | GTCTATCATAATAAATTATT+TGG | + | chr1_1:54317052-54317071 | None:intergenic | 15.0% |
| !! | TATGATTATTATAATCTGAA+AGG | - | chr1_1:54317130-54317149 | Msa0029120:intron | 15.0% |
| !! | ATGATTATTATAATCTGAAA+GGG | - | chr1_1:54317131-54317150 | Msa0029120:intron | 15.0% |
| !!! | TAATATTTTTTCCCTATAAT+AGG | + | chr1_1:54317454-54317473 | None:intergenic | 15.0% |
| !! | ATCCAATGTATTTAAAAAAA+TGG | + | chr1_1:54317610-54317629 | None:intergenic | 15.0% |
| !!! | TTTTACCAAATCTATAATAA+CGG | - | chr1_1:54318010-54318029 | Msa0029120:intron | 15.0% |
| !! | ATTTAACCAACTTATATAAA+TGG | + | chr1_1:54318184-54318203 | None:intergenic | 15.0% |
| !!! | ATAAGTTTGATTTAAAAGTA+AGG | - | chr1_1:54318272-54318291 | Msa0029120:intron | 15.0% |
| !!! | GTATTTTGATTTACATATAT+CGG | - | chr1_1:54318645-54318664 | Msa0029120:intron | 15.0% |
| !!! | TATTTTAGCACAAATTTTAC+CGG | - | chr1_1:54313501-54313520 | Msa0029120:three_prime_UTR | 20.0% |
| !! | GAATATAAACTTAATTAAGC+TGG | + | chr1_1:54313981-54314000 | None:intergenic | 20.0% |
| !! | GCTTAATTAAGTTTATATTC+TGG | - | chr1_1:54313981-54314000 | Msa0029120:CDS | 20.0% |
| !!! | ATTTTTACTCTATTTCCATT+AGG | - | chr1_1:54314055-54314074 | Msa0029120:CDS | 20.0% |
| !!! | AAAAATTCTGTCAACATTTT+TGG | + | chr1_1:54314409-54314428 | None:intergenic | 20.0% |
| !!! | TGTTGACAGAATTTTTTTAT+AGG | - | chr1_1:54314413-54314432 | Msa0029120:intron | 20.0% |
| !!! | GTTGACAGAATTTTTTTATA+GGG | - | chr1_1:54314414-54314433 | Msa0029120:intron | 20.0% |
| !! | ACGAAATTCTGAATATTTAT+AGG | - | chr1_1:54314535-54314554 | Msa0029120:CDS | 20.0% |
| !! | CGAAATTCTGAATATTTATA+GGG | - | chr1_1:54314536-54314555 | Msa0029120:CDS | 20.0% |
| !! | ATTAAACCTTCAAACAAAAT+TGG | + | chr1_1:54315061-54315080 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGAAGGTTTAATT+TGG | - | chr1_1:54315062-54315081 | Msa0029120:intron | 20.0% |
| !! | TTGAAAATAAAACTTGATCA+TGG | + | chr1_1:54315369-54315388 | None:intergenic | 20.0% |
| !!! | TTTGGTGTTTGAAATATTTT+AGG | - | chr1_1:54315673-54315692 | Msa0029120:intron | 20.0% |
| !! | TTGTTCACAAAATCAAAAAT+TGG | + | chr1_1:54315843-54315862 | None:intergenic | 20.0% |
| !!! | ATAGTTGACTTTTATTTTTG+TGG | - | chr1_1:54316513-54316532 | Msa0029120:intron | 20.0% |
| !!! | TTCTGAAAATTCTACAAATT+TGG | - | chr1_1:54316749-54316768 | Msa0029120:intron | 20.0% |
| !! | GATTAATGTATAAAACAAGA+TGG | + | chr1_1:54317239-54317258 | None:intergenic | 20.0% |
| !!! | TTTTAGTCATAAACAAAAAG+GGG | + | chr1_1:54317339-54317358 | None:intergenic | 20.0% |
| !!! | GTTTTAGTCATAAACAAAAA+GGG | + | chr1_1:54317340-54317359 | None:intergenic | 20.0% |
| !!! | AAATCAACAAAGAGTATTTA+CGG | + | chr1_1:54317553-54317572 | None:intergenic | 20.0% |
| !!! | CTCCATTTTTTTAAATACAT+TGG | - | chr1_1:54317605-54317624 | Msa0029120:intron | 20.0% |
| !! | TTAGTTAACAATTGATCAAT+TGG | + | chr1_1:54318132-54318151 | None:intergenic | 20.0% |
| !! | AATCAACCATTTATATAAGT+TGG | - | chr1_1:54318175-54318194 | Msa0029120:intron | 20.0% |
| !! | ATTAAGTGATTAAACTTGAT+TGG | - | chr1_1:54318235-54318254 | Msa0029120:intron | 20.0% |
| !!! | CCTACAATTTTTAGTTTAAA+TGG | + | chr1_1:54318309-54318328 | None:intergenic | 20.0% |
| !! | CCATTTAAACTAAAAATTGT+AGG | - | chr1_1:54318306-54318325 | Msa0029120:intron | 20.0% |
| !!! | ATAATGTGTTTTAAAGGTAA+AGG | - | chr1_1:54318819-54318838 | Msa0029120:CDS | 20.0% |
| ! | TCAAGATATATTATGACACA+GGG | + | chr1_1:54313559-54313578 | None:intergenic | 25.0% |
| ! | ATCAAGATATATTATGACAC+AGG | + | chr1_1:54313560-54313579 | None:intergenic | 25.0% |
| ! | TTTAAGAAGATGTGTCAATA+AGG | - | chr1_1:54313846-54313865 | Msa0029120:exon | 25.0% |
| ! | GAAAAACAGAAATGATAAGA+AGG | + | chr1_1:54313935-54313954 | None:intergenic | 25.0% |
| !!! | GCTTTTTTAAGTTATCCTAA+TGG | + | chr1_1:54314073-54314092 | None:intergenic | 25.0% |
| ! | TAATTAACCCTAAAACAGAT+AGG | + | chr1_1:54314284-54314303 | None:intergenic | 25.0% |
| !! | ACATTATCCTTAAGCATTTT+AGG | - | chr1_1:54314381-54314400 | Msa0029120:intron | 25.0% |
| !! | CATTATCCTTAAGCATTTTA+GGG | - | chr1_1:54314382-54314401 | Msa0029120:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+AGG | - | chr1_1:54314445-54314464 | Msa0029120:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | chr1_1:54314444-54314463 | Msa0029120:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | - | chr1_1:54314445-54314464 | Msa0029120:intron | 25.0% |
| ! | CAAAGGGTTAATTAAGTAAT+TGG | + | chr1_1:54314563-54314582 | None:intergenic | 25.0% |
| ! | GCTAACAACAATAAAACAAA+GGG | + | chr1_1:54314579-54314598 | None:intergenic | 25.0% |
| ! | AGCTAACAACAATAAAACAA+AGG | + | chr1_1:54314580-54314599 | None:intergenic | 25.0% |
| ! | ATTGATAAGAGTTTGTAAAG+AGG | + | chr1_1:54314701-54314720 | None:intergenic | 25.0% |
| ! | TCTTTACAAACTCTTATCAA+TGG | - | chr1_1:54314700-54314719 | Msa0029120:intron | 25.0% |
| ! | CTAATATTTGTCAGCTAATT+AGG | - | chr1_1:54314832-54314851 | Msa0029120:intron | 25.0% |
| !! | TTATGTTTTCCTTTTATGAG+TGG | - | chr1_1:54314947-54314966 | Msa0029120:intron | 25.0% |
| !!! | TAATTAACCTTCTCTAAGAT+AGG | - | chr1_1:54315092-54315111 | Msa0029120:intron | 25.0% |
| !! | ATTTTATCTGCATGACAAAT+AGG | + | chr1_1:54315340-54315359 | None:intergenic | 25.0% |
| !! | GAAAATATTTTCATTCCAGA+TGG | - | chr1_1:54315434-54315453 | Msa0029120:intron | 25.0% |
| !!! | TTAGTGATCAGTTTTTTTGT+AGG | - | chr1_1:54315496-54315515 | Msa0029120:intron | 25.0% |
| !!! | TAGTGATCAGTTTTTTTGTA+GGG | - | chr1_1:54315497-54315516 | Msa0029120:intron | 25.0% |
| ! | TACAAGAGAAAAAGATCAAT+CGG | + | chr1_1:54315553-54315572 | None:intergenic | 25.0% |
| !! | TTTTCTCTTGTAGAAAATTG+AGG | - | chr1_1:54315561-54315580 | Msa0029120:intron | 25.0% |
| ! | AATCAAAAATTGGATAACTG+AGG | + | chr1_1:54315833-54315852 | None:intergenic | 25.0% |
| ! | CGAAAGATTCAAAATTACTA+AGG | + | chr1_1:54316359-54316378 | None:intergenic | 25.0% |
| ! | TAATTACAGCCTAAATTCAT+AGG | - | chr1_1:54316693-54316712 | Msa0029120:intron | 25.0% |
| ! | AATTACAGCCTAAATTCATA+GGG | - | chr1_1:54316694-54316713 | Msa0029120:intron | 25.0% |
| ! | CAAAATACTTTCTTCTTTGA+TGG | + | chr1_1:54316857-54316876 | None:intergenic | 25.0% |
| ! | TTTGTCAAAAAAAAAGTGGA+AGG | + | chr1_1:54316895-54316914 | None:intergenic | 25.0% |
| ! | TACATTAATCACCTATTTAC+AGG | - | chr1_1:54317249-54317268 | Msa0029120:CDS | 25.0% |
| !!! | CGTTTTAGTCATAAACAAAA+AGG | + | chr1_1:54317341-54317360 | None:intergenic | 25.0% |
| !! | CAGAAACTAAAGTATTATGA+AGG | + | chr1_1:54317695-54317714 | None:intergenic | 25.0% |
| !! | CAGAAACTAAAGTATTATGA+AGG | + | chr1_1:54317695-54317714 | None:intergenic | 25.0% |
| !! | AGTTTGATTTAAAAGTAAGG+TGG | - | chr1_1:54318275-54318294 | Msa0029120:intron | 25.0% |
| !!! | TTTTGAGGATTGATTTTGTA+AGG | - | chr1_1:54318437-54318456 | Msa0029120:intron | 25.0% |
| !!! | TTTGAGGATTGATTTTGTAA+GGG | - | chr1_1:54318438-54318457 | Msa0029120:intron | 25.0% |
| ! | TGCTAATATATTAAAACAGC+AGG | - | chr1_1:54318540-54318559 | Msa0029120:intron | 25.0% |
| ! | TATTCAACACTATAAACTGT+AGG | + | chr1_1:54318680-54318699 | None:intergenic | 25.0% |
| !!! | ATTTGTGTGTCATTTTACAA+GGG | + | chr1_1:54318759-54318778 | None:intergenic | 25.0% |
| ! | AAACCAAACACTAAAAATAC+AGG | + | chr1_1:54318909-54318928 | None:intergenic | 25.0% |
| !!! | TGTATTTTTAGTGTTTGGTT+TGG | - | chr1_1:54318908-54318927 | Msa0029120:five_prime_UTR | 25.0% |
| TATGAAGAAAAAGAGGGATA+TGG | + | chr1_1:54313731-54313750 | None:intergenic | 30.0% | |
| CAGTTGTATGAAGAAAAAGA+GGG | + | chr1_1:54313737-54313756 | None:intergenic | 30.0% | |
| AAGATGTGTCAATAAGGAAA+AGG | - | chr1_1:54313852-54313871 | Msa0029120:exon | 30.0% | |
| AACAGAAATGATAAGAAGGA+AGG | + | chr1_1:54313931-54313950 | None:intergenic | 30.0% | |
| ATGTCATAAATTGTCCTGAT+TGG | + | chr1_1:54314024-54314043 | None:intergenic | 30.0% | |
| ATAAGCGCATATCATATAAG+TGG | + | chr1_1:54314186-54314205 | None:intergenic | 30.0% | |
| ! | TAGTACTACCTATCTGTTTT+AGG | - | chr1_1:54314273-54314292 | Msa0029120:intron | 30.0% |
| ! | AGTACTACCTATCTGTTTTA+GGG | - | chr1_1:54314274-54314293 | Msa0029120:intron | 30.0% |
| ATAAGGACTAAAAATGCTGA+TGG | - | chr1_1:54314462-54314481 | Msa0029120:intron | 30.0% | |
| CTTCAAAGAACTACTAAACA+TGG | + | chr1_1:54314637-54314656 | None:intergenic | 30.0% | |
| GAAAATTGTCCACTCATAAA+AGG | + | chr1_1:54314959-54314978 | None:intergenic | 30.0% | |
| !! | TAAGAACTGTAAAAGCGTTA+CGG | - | chr1_1:54314994-54315013 | Msa0029120:intron | 30.0% |
| !! | GTGAAACCAATTTTGTTTGA+AGG | - | chr1_1:54315052-54315071 | Msa0029120:intron | 30.0% |
| ! | CTTTTCTAACATCTTCTTCA+GGG | + | chr1_1:54315239-54315258 | None:intergenic | 30.0% |
| AAGAAGATGTTAGAAAAGCA+AGG | - | chr1_1:54315241-54315260 | Msa0029120:intron | 30.0% | |
| !!! | ACTTACTGAACTTGTTTTGA+TGG | - | chr1_1:54315603-54315622 | Msa0029120:intron | 30.0% |
| !!! | AACTTGTTTTGATGGTCATA+TGG | - | chr1_1:54315611-54315630 | Msa0029120:intron | 30.0% |
| !!! | CGTGATGTAAGTTGTTATTT+TGG | - | chr1_1:54315655-54315674 | Msa0029120:intron | 30.0% |
| ! | ATCTTCGGTTACAGTTTTTA+AGG | - | chr1_1:54315777-54315796 | Msa0029120:intron | 30.0% |
| ! | TGATTTTGTGAACAACATAG+TGG | - | chr1_1:54315848-54315867 | Msa0029120:intron | 30.0% |
| AGTTTGACAAGCATGTAAAA+TGG | + | chr1_1:54315912-54315931 | None:intergenic | 30.0% | |
| !! | TAACTCAATTTTGATACCTG+AGG | + | chr1_1:54315970-54315989 | None:intergenic | 30.0% |
| TAACTCTTGACAAATTCTTG+AGG | - | chr1_1:54316018-54316037 | Msa0029120:intron | 30.0% | |
| AATTCCACAGCCAAATAATA+AGG | - | chr1_1:54316142-54316161 | Msa0029120:intron | 30.0% | |
| !!! | TTTTTTTTTGGTGCAATGGT+GGG | + | chr1_1:54316186-54316205 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGCAATGG+TGG | + | chr1_1:54316187-54316206 | None:intergenic | 30.0% |
| !!! | CCTTTTTTTTTTTGGTGCAA+TGG | + | chr1_1:54316190-54316209 | None:intergenic | 30.0% |
| CCATTGCACCAAAAAAAAAA+AGG | - | chr1_1:54316187-54316206 | Msa0029120:intron | 30.0% | |
| AGATGCATATATAGAGTTGA+GGG | + | chr1_1:54316254-54316273 | None:intergenic | 30.0% | |
| TCAAAATTACTAAGGAGTGA+AGG | + | chr1_1:54316351-54316370 | None:intergenic | 30.0% | |
| AACAGAACATACAGCAAAAT+AGG | + | chr1_1:54316436-54316455 | None:intergenic | 30.0% | |
| ATTACAGCCTAAATTCATAG+GGG | - | chr1_1:54316695-54316714 | Msa0029120:intron | 30.0% | |
| !!! | TTTTTTGATACTGCTGAAGT+TGG | + | chr1_1:54316810-54316829 | None:intergenic | 30.0% |
| ! | ACTCGGTGAAAATAAATAGT+TGG | + | chr1_1:54317006-54317025 | None:intergenic | 30.0% |
| !! | CTATTTATTTTCACCGAGTT+TGG | - | chr1_1:54317007-54317026 | Msa0029120:intron | 30.0% |
| ! | CCTTTTGTAACCTTCTATAT+CGG | - | chr1_1:54317101-54317120 | Msa0029120:intron | 30.0% |
| CATATCATATCCGATATAGA+AGG | + | chr1_1:54317114-54317133 | None:intergenic | 30.0% | |
| ! | ATCCTTTTCATCCTGTAAAT+AGG | + | chr1_1:54317263-54317282 | None:intergenic | 30.0% |
| TTATGACTAAAACGCTTTCT+TGG | - | chr1_1:54317347-54317366 | Msa0029120:CDS | 30.0% | |
| ATGTCTTAAGAGCCTATTAT+AGG | - | chr1_1:54317439-54317458 | Msa0029120:intron | 30.0% | |
| TGTCTTAAGAGCCTATTATA+GGG | - | chr1_1:54317440-54317459 | Msa0029120:intron | 30.0% | |
| ! | TCTGTTCTGAGTTTAACTTT+CGG | - | chr1_1:54317711-54317730 | Msa0029120:intron | 30.0% |
| !!! | TTCGGTTTTGACTTTCATAT+TGG | - | chr1_1:54317729-54317748 | Msa0029120:intron | 30.0% |
| ! | TCTGTTCTGAGTTTAACTTT+CGG | - | chr1_1:54317711-54317730 | Msa0029120:intron | 30.0% |
| !! | GATCTTTTGATTATGTACGA+TGG | - | chr1_1:54317864-54317883 | Msa0029120:intron | 30.0% |
| !!! | ATGGCTTTAATTTTGATGAG+TGG | - | chr1_1:54317883-54317902 | Msa0029120:intron | 30.0% |
| TATCAAATGACTCAAATCCA+GGG | + | chr1_1:54317977-54317996 | None:intergenic | 30.0% | |
| ATATCAAATGACTCAAATCC+AGG | + | chr1_1:54317978-54317997 | None:intergenic | 30.0% | |
| GGTATCCGTTATTATAGATT+TGG | + | chr1_1:54318018-54318037 | None:intergenic | 30.0% | |
| TCAACCATAATGTCAAACTA+CGG | + | chr1_1:54318039-54318058 | None:intergenic | 30.0% | |
| !! | AGTGGATTCTAAAGTACAAT+CGG | - | chr1_1:54318059-54318078 | Msa0029120:intron | 30.0% |
| ! | TCGATGATAATACTCTTTTG+AGG | - | chr1_1:54318422-54318441 | Msa0029120:intron | 30.0% |
| !!! | TTTGTGTGTCATTTTACAAG+GGG | + | chr1_1:54318758-54318777 | None:intergenic | 30.0% |
| !!! | CATTTGTGTGTCATTTTACA+AGG | + | chr1_1:54318760-54318779 | None:intergenic | 30.0% |
| GTAAAATGACACACAAATGT+AGG | - | chr1_1:54318761-54318780 | Msa0029120:CDS | 30.0% | |
| AAATGTAGGCATGACAATTT+AGG | - | chr1_1:54318775-54318794 | Msa0029120:CDS | 30.0% | |
| AATGTAGGCATGACAATTTA+GGG | - | chr1_1:54318776-54318795 | Msa0029120:CDS | 30.0% | |
| !! | TGGGTGATAATGTGTTTTAA+AGG | - | chr1_1:54318813-54318832 | Msa0029120:CDS | 30.0% |
| ! | GATTTGAGTTAATTGTACAG+TGG | - | chr1_1:54318959-54318978 | Msa0029120:five_prime_UTR | 30.0% |
| GTGAGACAAATCAAGCAAAA+AGG | - | chr1_1:54313594-54313613 | Msa0029120:three_prime_UTR | 35.0% | |
| TCACTCACTCATTTCTTTGT+GGG | - | chr1_1:54313623-54313642 | Msa0029120:three_prime_UTR | 35.0% | |
| AGAAGGGATGAAGAATAAAG+CGG | + | chr1_1:54313692-54313711 | None:intergenic | 35.0% | |
| GCAGTTGTATGAAGAAAAAG+AGG | + | chr1_1:54313738-54313757 | None:intergenic | 35.0% | |
| ATTGAAATATGTAGCAGCCA+CGG | + | chr1_1:54313782-54313801 | None:intergenic | 35.0% | |
| TGTCAATAAGGAAAAGGAAG+AGG | - | chr1_1:54313858-54313877 | Msa0029120:CDS | 35.0% | |
| ACATCATCATAGTAGTGAGA+AGG | + | chr1_1:54313901-54313920 | None:intergenic | 35.0% | |
| !!! | ACTATTTTAAGACCCCTGTT+TGG | + | chr1_1:54314209-54314228 | None:intergenic | 35.0% |
| TAGGGATGAATTGACACTAT+TGG | + | chr1_1:54314234-54314253 | None:intergenic | 35.0% | |
| TGCTTAAGGATAATGTCACA+GGG | + | chr1_1:54314377-54314396 | None:intergenic | 35.0% | |
| ATGCTTAAGGATAATGTCAC+AGG | + | chr1_1:54314378-54314397 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr1_1:54314391-54314410 | None:intergenic | 35.0% | |
| !! | ACGTTGTAGCTTGTTGAAAT+TGG | - | chr1_1:54314662-54314681 | Msa0029120:intron | 35.0% |
| !! | CGTTGTAGCTTGTTGAAATT+GGG | - | chr1_1:54314663-54314682 | Msa0029120:intron | 35.0% |
| TGTGCTTATACAAACAACCT+TGG | - | chr1_1:54314858-54314877 | Msa0029120:intron | 35.0% | |
| TCTCTAAACATATTCTGCCA+AGG | + | chr1_1:54314878-54314897 | None:intergenic | 35.0% | |
| ATTGTCATATCTTTGATGCC+TGG | - | chr1_1:54314905-54314924 | Msa0029120:intron | 35.0% | |
| TGAAAATCAGAAATTGTGCC+AGG | + | chr1_1:54314926-54314945 | None:intergenic | 35.0% | |
| ! | TGAGTGGACAATTTTCTTCT+TGG | - | chr1_1:54314963-54314982 | Msa0029120:intron | 35.0% |
| !! | AACCTTCTCTAAGATAGGAA+TGG | - | chr1_1:54315097-54315116 | Msa0029120:intron | 35.0% |
| !! | ATTGAAGAGTATCGTGAAGT+TGG | - | chr1_1:54315195-54315214 | Msa0029120:CDS | 35.0% |
| ! | GCTTTTCTAACATCTTCTTC+AGG | + | chr1_1:54315240-54315259 | None:intergenic | 35.0% |
| AGAAAAAGACTTGTACCATC+TGG | + | chr1_1:54315452-54315471 | None:intergenic | 35.0% | |
| !! | CTTACCATTTTTCAATGAGC+TGG | - | chr1_1:54315740-54315759 | Msa0029120:intron | 35.0% |
| TTGACAAATTCTTGAGGTTG+AGG | - | chr1_1:54316024-54316043 | Msa0029120:intron | 35.0% | |
| ! | TATCATTTTGCGCATGTATG+AGG | + | chr1_1:54316084-54316103 | None:intergenic | 35.0% |
| ! | TCAGAGCTTGCCTTATTATT+TGG | + | chr1_1:54316155-54316174 | None:intergenic | 35.0% |
| TGCACCAAAAAAAAAAAGGC+AGG | - | chr1_1:54316191-54316210 | Msa0029120:intron | 35.0% | |
| ! | GGTTAATGTTTTGTGCACTA+TGG | + | chr1_1:54316219-54316238 | None:intergenic | 35.0% |
| GAGATGCATATATAGAGTTG+AGG | + | chr1_1:54316255-54316274 | None:intergenic | 35.0% | |
| TTACTAAGGAGTGAAGGATT+GGG | + | chr1_1:54316345-54316364 | None:intergenic | 35.0% | |
| ATTACTAAGGAGTGAAGGAT+TGG | + | chr1_1:54316346-54316365 | None:intergenic | 35.0% | |
| TTTGAATTATGCTGCTAGCT+TGG | - | chr1_1:54316455-54316474 | Msa0029120:intron | 35.0% | |
| ! | GTTTGCTTTAGACACTACAA+TGG | - | chr1_1:54316535-54316554 | Msa0029120:intron | 35.0% |
| ! | GTCAAGTTTGCTTAGATTTC+AGG | - | chr1_1:54316602-54316621 | Msa0029120:intron | 35.0% |
| ! | TCTTCTTTGATGGTTACACT+TGG | + | chr1_1:54316847-54316866 | None:intergenic | 35.0% |
| ATGTAATCCTTCAACTTAGC+AGG | - | chr1_1:54316917-54316936 | Msa0029120:intron | 35.0% | |
| !! | TCTTTTACCTGCTAAGTTGA+AGG | + | chr1_1:54316927-54316946 | None:intergenic | 35.0% |
| ! | TTTTGAACCCATCAAATGTC+AGG | - | chr1_1:54316980-54316999 | Msa0029120:intron | 35.0% |
| CCGATATAGAAGGTTACAAA+AGG | + | chr1_1:54317104-54317123 | None:intergenic | 35.0% | |
| CACCTATTTACAGGATGAAA+AGG | - | chr1_1:54317258-54317277 | Msa0029120:CDS | 35.0% | |
| AAAGGATGCTATAAGAAGTC+TGG | - | chr1_1:54317276-54317295 | Msa0029120:CDS | 35.0% | |
| TCTGGATCTGTTATACAGAA+GGG | - | chr1_1:54317294-54317313 | Msa0029120:CDS | 35.0% | |
| CTTAGTTGCTTGATATTTGC+TGG | - | chr1_1:54317410-54317429 | Msa0029120:intron | 35.0% | |
| TGCAGTGAACACTTATATTC+TGG | + | chr1_1:54317494-54317513 | None:intergenic | 35.0% | |
| !!! | CTCTTTAGCAGCAGATTTTT+TGG | + | chr1_1:54317520-54317539 | None:intergenic | 35.0% |
| !! | ATGAAAGTTGATGCAAGCAA+AGG | + | chr1_1:54317657-54317676 | None:intergenic | 35.0% |
| GCTTGCATCAACTTTCATAT+TGG | - | chr1_1:54317659-54317678 | Msa0029120:intron | 35.0% | |
| TCATGATTGATACATTCCCA+AGG | - | chr1_1:54317925-54317944 | Msa0029120:intron | 35.0% | |
| CATGATTGATACATTCCCAA+GGG | - | chr1_1:54317926-54317945 | Msa0029120:intron | 35.0% | |
| ATCAAATGACTCAAATCCAG+GGG | + | chr1_1:54317976-54317995 | None:intergenic | 35.0% | |
| GATACCGTAGTTTGACATTA+TGG | - | chr1_1:54318032-54318051 | Msa0029120:intron | 35.0% | |
| GTTTGACATTATGGTTGAAG+TGG | - | chr1_1:54318041-54318060 | Msa0029120:intron | 35.0% | |
| ! | TCTTGTTTGTATCAGCATCA+CGG | - | chr1_1:54318376-54318395 | Msa0029120:intron | 35.0% |
| !! | TTATCATCGACTTCAAGTGA+TGG | + | chr1_1:54318412-54318431 | None:intergenic | 35.0% |
| AATCTAGTAGAGCTTCTACT+TGG | + | chr1_1:54318585-54318604 | None:intergenic | 35.0% | |
| AGTAGAAGCTCTACTAGATT+TGG | - | chr1_1:54318585-54318604 | Msa0029120:CDS | 35.0% | |
| ! | ATTTGGCCATTAGTTTGAAC+TGG | - | chr1_1:54318602-54318621 | Msa0029120:CDS | 35.0% |
| TAGCTACCAGTTCAAACTAA+TGG | + | chr1_1:54318611-54318630 | None:intergenic | 35.0% | |
| AAAATACAGGACCATCCATT+TGG | + | chr1_1:54318896-54318915 | None:intergenic | 35.0% | |
| !!! | GGTCCTGTATTTTTAGTGTT+TGG | - | chr1_1:54318903-54318922 | Msa0029120:five_prime_UTR | 35.0% |
| CACAGCAGATATATTCGTAC+CGG | + | chr1_1:54313523-54313542 | None:intergenic | 40.0% | |
| ! | ATGACACAGGGTTTAAGACA+CGG | + | chr1_1:54313547-54313566 | None:intergenic | 40.0% |
| CTCACTCACTCATTTCTTTG+TGG | - | chr1_1:54313622-54313641 | Msa0029120:three_prime_UTR | 40.0% | |
| CACTCACTCATTTCTTTGTG+GGG | - | chr1_1:54313624-54313643 | Msa0029120:three_prime_UTR | 40.0% | |
| AAAGAAAGAGAGAGAAGTGG+AGG | + | chr1_1:54313669-54313688 | None:intergenic | 40.0% | |
| GAAAAAGAGGGATATGGAGA+AGG | + | chr1_1:54313725-54313744 | None:intergenic | 40.0% | |
| AAGCACTTGTGAAACCAATC+AGG | - | chr1_1:54314007-54314026 | Msa0029120:CDS | 40.0% | |
| TGATATGCGCTTATCCAAAC+AGG | - | chr1_1:54314192-54314211 | Msa0029120:intron | 40.0% | |
| GATATGCGCTTATCCAAACA+GGG | - | chr1_1:54314193-54314212 | Msa0029120:intron | 40.0% | |
| ATATGCGCTTATCCAAACAG+GGG | - | chr1_1:54314194-54314213 | Msa0029120:intron | 40.0% | |
| ATAGGGACTGAAAATGCTGA+TGG | - | chr1_1:54314431-54314450 | Msa0029120:intron | 40.0% | |
| !! | TAGCTTGTTGAAATTGGGTG+AGG | - | chr1_1:54314668-54314687 | Msa0029120:intron | 40.0% |
| ATGGTCCTATCTATCCAATG+TGG | - | chr1_1:54314719-54314738 | Msa0029120:intron | 40.0% | |
| TGGTCCTATCTATCCAATGT+GGG | - | chr1_1:54314720-54314739 | Msa0029120:intron | 40.0% | |
| AAGTCCCACATTGGATAGAT+AGG | + | chr1_1:54314727-54314746 | None:intergenic | 40.0% | |
| TATCTATCCAATGTGGGACT+TGG | - | chr1_1:54314726-54314745 | Msa0029120:intron | 40.0% | |
| ATCTATCCAATGTGGGACTT+GGG | - | chr1_1:54314727-54314746 | Msa0029120:intron | 40.0% | |
| ACCATTTATATACACGCACC+AGG | + | chr1_1:54314791-54314810 | None:intergenic | 40.0% | |
| TGGTGCGTGTATATAAATGG+TGG | - | chr1_1:54314790-54314809 | Msa0029120:intron | 40.0% | |
| GCGTGTATATAAATGGTGGT+TGG | - | chr1_1:54314794-54314813 | Msa0029120:intron | 40.0% | |
| TACGGTATCAATGTGTCTCT+TGG | - | chr1_1:54315012-54315031 | Msa0029120:intron | 40.0% | |
| TGCCATTCCTATCTTAGAGA+AGG | + | chr1_1:54315102-54315121 | None:intergenic | 40.0% | |
| AAGTAGAAGAGGTGATGTCT+TGG | - | chr1_1:54315298-54315317 | Msa0029120:intron | 40.0% | |
| !!! | CAGTTTTTTTGTAGGGACAC+TGG | - | chr1_1:54315504-54315523 | Msa0029120:intron | 40.0% |
| AGGACCAGCTCATTGAAAAA+TGG | + | chr1_1:54315747-54315766 | None:intergenic | 40.0% | |
| GTCCTTTGACTGTCAATCTT+CGG | - | chr1_1:54315762-54315781 | Msa0029120:intron | 40.0% | |
| AACCGAAGATTGACAGTCAA+AGG | + | chr1_1:54315767-54315786 | None:intergenic | 40.0% | |
| ACTCAAGAGTTTGACAAGCA+TGG | + | chr1_1:54315877-54315896 | None:intergenic | 40.0% | |
| ! | CTTGCCTTATTATTTGGCTG+TGG | + | chr1_1:54316149-54316168 | None:intergenic | 40.0% |
| !!! | GGAGCCTGCCTTTTTTTTTT+TGG | + | chr1_1:54316198-54316217 | None:intergenic | 40.0% |
| CAACATGAATCCATCTGCAA+AGG | - | chr1_1:54316283-54316302 | Msa0029120:intron | 40.0% | |
| TACTAAGGAGTGAAGGATTG+GGG | + | chr1_1:54316344-54316363 | None:intergenic | 40.0% | |
| ! | TTGACTCGTAAACTTGCAAG+AGG | + | chr1_1:54316587-54316606 | None:intergenic | 40.0% |
| CTCGAGTTTGACAATCATGA+CGG | - | chr1_1:54316639-54316658 | Msa0029120:intron | 40.0% | |
| GTCTTTGTGAAGTAGAACTG+TGG | - | chr1_1:54316663-54316682 | Msa0029120:intron | 40.0% | |
| ATGGAGTCCCCTATGAATTT+AGG | + | chr1_1:54316705-54316724 | None:intergenic | 40.0% | |
| CAACTTAGCAGGTAAAAGAG+TGG | - | chr1_1:54316928-54316947 | Msa0029120:intron | 40.0% | |
| ! | TAGTTGGCCTGACATTTGAT+GGG | + | chr1_1:54316990-54317009 | None:intergenic | 40.0% |
| ! | ATAGTTGGCCTGACATTTGA+TGG | + | chr1_1:54316991-54317010 | None:intergenic | 40.0% |
| AACAAGATGGTCAGAGAAAG+AGG | + | chr1_1:54317226-54317245 | None:intergenic | 40.0% | |
| GTCTGGATCTGTTATACAGA+AGG | - | chr1_1:54317293-54317312 | Msa0029120:CDS | 40.0% | |
| TCTGTTATACAGAAGGGTTG+AGG | - | chr1_1:54317300-54317319 | Msa0029120:CDS | 40.0% | |
| TACGGCTCAACACACTTTAA+TGG | - | chr1_1:54317380-54317399 | Msa0029120:intron | 40.0% | |
| ! | GTTGATGCAAGCAAAGGTAT+GGG | + | chr1_1:54317651-54317670 | None:intergenic | 40.0% |
| ! | AGTTGATGCAAGCAAAGGTA+TGG | + | chr1_1:54317652-54317671 | None:intergenic | 40.0% |
| ATTGAGTAATCTCATCGCAG+GGG | + | chr1_1:54317844-54317863 | None:intergenic | 40.0% | |
| CATTGAGTAATCTCATCGCA+GGG | + | chr1_1:54317845-54317864 | None:intergenic | 40.0% | |
| TCATTGAGTAATCTCATCGC+AGG | + | chr1_1:54317846-54317865 | None:intergenic | 40.0% | |
| TCAAATGACTCAAATCCAGG+GGG | + | chr1_1:54317975-54317994 | None:intergenic | 40.0% | |
| CTTGTTTGTATCAGCATCAC+GGG | - | chr1_1:54318377-54318396 | Msa0029120:intron | 40.0% | |
| !! | GAGGATTGATTTTGTAAGGG+AGG | - | chr1_1:54318441-54318460 | Msa0029120:intron | 40.0% |
| ATGAATTGCTGCAAGACGTT+CGG | - | chr1_1:54318467-54318486 | Msa0029120:intron | 40.0% | |
| TTAGGGTGATGAGAATCTCT+TGG | - | chr1_1:54318793-54318812 | Msa0029120:CDS | 40.0% | |
| TAGGGTGATGAGAATCTCTT+GGG | - | chr1_1:54318794-54318813 | Msa0029120:CDS | 40.0% | |
| ACATCTACCGTCTATCCAAA+TGG | - | chr1_1:54318878-54318897 | Msa0029120:five_prime_UTR | 40.0% | |
| AGAGAGAGAAGTGGAGGTTA+GGG | + | chr1_1:54313663-54313682 | None:intergenic | 45.0% | |
| AAGAGAGAGAAGTGGAGGTT+AGG | + | chr1_1:54313664-54313683 | None:intergenic | 45.0% | |
| CGGAAAGAAAGAGAGAGAAG+TGG | + | chr1_1:54313672-54313691 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGTGGCAAGAA+GGG | + | chr1_1:54313708-54313727 | None:intergenic | 45.0% |
| TACAACTGCAAATCCACCAC+AGG | - | chr1_1:54313749-54313768 | Msa0029120:three_prime_UTR | 45.0% | |
| !! | AAGGAAGAGGTGCTTCTAGA+AGG | - | chr1_1:54313871-54313890 | Msa0029120:CDS | 45.0% |
| !! | AGGAAGAGGTGCTTCTAGAA+GGG | - | chr1_1:54313872-54313891 | Msa0029120:CDS | 45.0% |
| GCCTGGTGCGTGTATATAAA+TGG | - | chr1_1:54314787-54314806 | Msa0029120:intron | 45.0% | |
| TAAGATAGGAATGGCAAGCC+CGG | - | chr1_1:54315106-54315125 | Msa0029120:intron | 45.0% | |
| AGTATCGTGAAGTTGGCATG+CGG | - | chr1_1:54315202-54315221 | Msa0029120:intron | 45.0% | |
| CACCTCTTCTACTTCTTCAG+CGG | + | chr1_1:54315292-54315311 | None:intergenic | 45.0% | |
| AGTTGAGGGTTACAGCTATG+AGG | + | chr1_1:54316240-54316259 | None:intergenic | 45.0% | |
| CATGAATCCATCTGCAAAGG+AGG | - | chr1_1:54316286-54316305 | Msa0029120:intron | 45.0% | |
| TCGTTTACCTCCTTTGCAGA+TGG | + | chr1_1:54316296-54316315 | None:intergenic | 45.0% | |
| ACTAAGGAGTGAAGGATTGG+GGG | + | chr1_1:54316343-54316362 | None:intergenic | 45.0% | |
| ! | ATTATGCTGCTAGCTTGGTC+TGG | - | chr1_1:54316460-54316479 | Msa0029120:intron | 45.0% |
| TGACAGCTTGACTCCAAACT+CGG | + | chr1_1:54317023-54317042 | None:intergenic | 45.0% | |
| AAAGTGTGTTGAGCCGTAGA+GGG | + | chr1_1:54317378-54317397 | None:intergenic | 45.0% | |
| TAAAGTGTGTTGAGCCGTAG+AGG | + | chr1_1:54317379-54317398 | None:intergenic | 45.0% | |
| ! | GCAAAGGTATGGGAAGGAAA+AGG | + | chr1_1:54317641-54317660 | None:intergenic | 45.0% |
| ! | ATGCAAGCAAAGGTATGGGA+AGG | + | chr1_1:54317647-54317666 | None:intergenic | 45.0% |
| GACTGAGATCTTGAAACGAG+AGG | - | chr1_1:54317815-54317834 | Msa0029120:intron | 45.0% | |
| GATTGATACATTCCCAAGGG+AGG | - | chr1_1:54317929-54317948 | Msa0029120:intron | 45.0% | |
| TGCTATATGGATCCTCCCTT+GGG | + | chr1_1:54317944-54317963 | None:intergenic | 45.0% | |
| ATGCTATATGGATCCTCCCT+TGG | + | chr1_1:54317945-54317964 | None:intergenic | 45.0% | |
| GGGGGAACAAGAATGCTATA+TGG | + | chr1_1:54317957-54317976 | None:intergenic | 45.0% | |
| TATAGCATTCTTGTTCCCCC+TGG | - | chr1_1:54317957-54317976 | Msa0029120:intron | 45.0% | |
| ACTTCAAGTGATGGTCGCAA+TGG | + | chr1_1:54318403-54318422 | None:intergenic | 45.0% | |
| TTGCAGTCCAAGTAGCTTCA+CGG | - | chr1_1:54318720-54318739 | Msa0029120:CDS | 45.0% | |
| ATACAACCCGTGAAGCTACT+TGG | + | chr1_1:54318730-54318749 | None:intergenic | 45.0% | |
| CTACCGTCTATCCAAATGGA+TGG | - | chr1_1:54318882-54318901 | Msa0029120:five_prime_UTR | 45.0% | |
| GGACCATCCATTTGGATAGA+CGG | + | chr1_1:54318888-54318907 | None:intergenic | 45.0% | |
| !!! | ATAGTTTTTTTTTTTTTTTT+TGG | - | chr1_1:54314098-54314117 | Msa0029120:intron | 5.0% |
| !!! | CATATTTTTATTTTTTTATA+AGG | - | chr1_1:54316117-54316136 | Msa0029120:intron | 5.0% |
| !! | GAGAAGGTGTTGTGGCAAGA+AGG | + | chr1_1:54313709-54313728 | None:intergenic | 50.0% |
| !! | GGGATATGGAGAAGGTGTTG+TGG | + | chr1_1:54313717-54313736 | None:intergenic | 50.0% |
| GGAAAACCCAAGTCCCACAT+TGG | + | chr1_1:54314736-54314755 | None:intergenic | 50.0% | |
| !! | CTTGGTCTTTTCACGTTGCC+GGG | + | chr1_1:54315127-54315146 | None:intergenic | 50.0% |
| !! | CCTTGGTCTTTTCACGTTGC+CGG | + | chr1_1:54315128-54315147 | None:intergenic | 50.0% |
| AAGACGCAGAGAGGAAGAAG+AGG | - | chr1_1:54315158-54315177 | Msa0029120:intron | 50.0% | |
| AGCCGCTGAAGAAGTAGAAG+AGG | - | chr1_1:54315287-54315306 | Msa0029120:intron | 50.0% | |
| ATTGAGGAAGCTGCTGAGAG+AGG | - | chr1_1:54315577-54315596 | Msa0029120:intron | 50.0% | |
| GGAATCGCCTTGATCTTGCT+CGG | - | chr1_1:54315632-54315651 | Msa0029120:intron | 50.0% | |
| TCACACGAGCTTACAACCTC+AGG | - | chr1_1:54315951-54315970 | Msa0029120:intron | 50.0% | |
| CTAAGGAGTGAAGGATTGGG+GGG | + | chr1_1:54316342-54316361 | None:intergenic | 50.0% | |
| TTTCTTGGTTCCCCCCTCTA+CGG | - | chr1_1:54317362-54317381 | Msa0029120:intron | 50.0% | |
| AAGTGTGTTGAGCCGTAGAG+GGG | + | chr1_1:54317377-54317396 | None:intergenic | 50.0% | |
| ATTGCTGCAAGACGTTCGGT+CGG | - | chr1_1:54318471-54318490 | Msa0029120:intron | 50.0% | |
| TGCAGTCCAAGTAGCTTCAC+GGG | - | chr1_1:54318721-54318740 | Msa0029120:CDS | 50.0% | |
| GAGAAGTGGAGGTTAGGGAG+AGG | + | chr1_1:54313658-54313677 | None:intergenic | 55.0% | |
| CCACGGAAACTAACCTGTGG+TGG | + | chr1_1:54313765-54313784 | None:intergenic | 55.0% | |
| !! | CCACCACAGGTTAGTTTCCG+TGG | - | chr1_1:54313762-54313781 | Msa0029120:three_prime_UTR | 55.0% |
| CAGCCACGGAAACTAACCTG+TGG | + | chr1_1:54313768-54313787 | None:intergenic | 55.0% | |
| ! | CAATAGTGTTGGGCGTGAGG+GGG | + | chr1_1:54314766-54314785 | None:intergenic | 55.0% |
| ! | CCAATAGTGTTGGGCGTGAG+GGG | + | chr1_1:54314767-54314786 | None:intergenic | 55.0% |
| ! | CCCAATAGTGTTGGGCGTGA+GGG | + | chr1_1:54314768-54314787 | None:intergenic | 55.0% |
| CCCTCACGCCCAACACTATT+GGG | - | chr1_1:54314765-54314784 | Msa0029120:intron | 55.0% | |
| GCACCAGGCCCAATAGTGTT+GGG | + | chr1_1:54314776-54314795 | None:intergenic | 55.0% | |
| TGGTGGTTGGCGCTATCGAT+AGG | - | chr1_1:54314807-54314826 | Msa0029120:intron | 55.0% | |
| CCGGCAACGTGAAAAGACCA+AGG | - | chr1_1:54315125-54315144 | Msa0029120:intron | 55.0% | |
| GCGTCTTCGATGCAACTCCT+TGG | + | chr1_1:54315145-54315164 | None:intergenic | 55.0% | |
| GTTGCATCGAAGACGCAGAG+AGG | - | chr1_1:54315149-54315168 | Msa0029120:intron | 55.0% | |
| TGAAGTTGGCATGCGGCTGA+AGG | - | chr1_1:54315209-54315228 | Msa0029120:intron | 55.0% | |
| CATCACGCCGAGCAAGATCA+AGG | + | chr1_1:54315642-54315661 | None:intergenic | 55.0% | |
| !! | TAAGGCAAGCTCTGAGCCAC+TGG | - | chr1_1:54316160-54316179 | Msa0029120:intron | 55.0% |
| ! | CTGCTAGCTTGGTCTGGTCT+GGG | - | chr1_1:54316466-54316485 | Msa0029120:intron | 55.0% |
| AGTGTGTTGAGCCGTAGAGG+GGG | + | chr1_1:54317376-54317395 | None:intergenic | 55.0% | |
| ! | TGGGCGTGAGGGGGTGTATT+GGG | + | chr1_1:54314757-54314776 | None:intergenic | 60.0% |
| ! | TTGGGCGTGAGGGGGTGTAT+TGG | + | chr1_1:54314758-54314777 | None:intergenic | 60.0% |
| CCCCTCACGCCCAACACTAT+TGG | - | chr1_1:54314764-54314783 | Msa0029120:intron | 60.0% | |
| ! | GCCCAATAGTGTTGGGCGTG+AGG | + | chr1_1:54314769-54314788 | None:intergenic | 60.0% |
| ACGCCCAACACTATTGGGCC+TGG | - | chr1_1:54314770-54314789 | Msa0029120:intron | 60.0% | |
| CGCACCAGGCCCAATAGTGT+TGG | + | chr1_1:54314777-54314796 | None:intergenic | 60.0% | |
| !! | TTGGTGCAATGGTGGGCCAG+TGG | + | chr1_1:54316179-54316198 | None:intergenic | 60.0% |
| ! | GCTGCTAGCTTGGTCTGGTC+TGG | - | chr1_1:54316465-54316484 | Msa0029120:intron | 60.0% |
| GTGTGTTGAGCCGTAGAGGG+GGG | + | chr1_1:54317375-54317394 | None:intergenic | 60.0% | |
| GCAAGACGTTCGGTCGGAAC+AGG | - | chr1_1:54318477-54318496 | Msa0029120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54313495 | 54318990 | 54313495 | ID=Msa0029120;Name=Msa0029120 |
| chr1_1 | mRNA | 54313495 | 54318990 | 54313495 | ID=Msa0029120-mRNA-1;Parent=Msa0029120;Name=Msa0029120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152|1|1|1|1|1|7|363|318 |
| chr1_1 | exon | 54313495 | 54314094 | 54313495 | ID=Msa0029120-mRNA-1:exon:16132;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54314481 | 54314669 | 54314481 | ID=Msa0029120-mRNA-1:exon:16131;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54315164 | 54315214 | 54315164 | ID=Msa0029120-mRNA-1:exon:16130;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54316825 | 54316911 | 54316825 | ID=Msa0029120-mRNA-1:exon:16129;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54317177 | 54317371 | 54317177 | ID=Msa0029120-mRNA-1:exon:16128;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54318567 | 54318640 | 54318567 | ID=Msa0029120-mRNA-1:exon:16127;Parent=Msa0029120-mRNA-1 |
| chr1_1 | exon | 54318715 | 54318990 | 54318715 | ID=Msa0029120-mRNA-1:exon:16126;Parent=Msa0029120-mRNA-1 |
| chr1_1 | five_prime_UTR | 54318839 | 54318990 | 54318839 | ID=Msa0029120-mRNA-1:five_prime_utr;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54318715 | 54318838 | 54318715 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54318567 | 54318640 | 54318567 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54317177 | 54317371 | 54317177 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54316825 | 54316911 | 54316825 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54315164 | 54315214 | 54315164 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54314481 | 54314669 | 54314481 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | CDS | 54313858 | 54314094 | 54313858 | ID=Msa0029120-mRNA-1:cds;Parent=Msa0029120-mRNA-1 |
| chr1_1 | three_prime_UTR | 54313495 | 54313857 | 54313495 | ID=Msa0029120-mRNA-1:three_prime_utr;Parent=Msa0029120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
