AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0082790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082790 MtrunA17_Chr1g0196071 98.756 402 5 0 1 402 1 402 0.0 830
Msa0082790 MtrunA17_Chr2g0286441 68.490 384 118 3 21 402 11 393 0.0 554
Msa0082790 MtrunA17_Chr2g0278511 53.241 432 167 10 1 402 1 427 7.15e-154 441
Msa0082790 MtrunA17_Chr5g0404321 52.719 423 172 7 1 402 1 416 5.54e-146 421
Msa0082790 MtrunA17_Chr1g0201891 50.801 437 174 10 1 402 1 431 7.94e-144 416
Msa0082790 MtrunA17_Chr8g0373001 51.429 420 178 6 1 402 1 412 5.82e-141 407
Msa0082790 MtrunA17_Chr1g0155301 55.153 359 149 6 50 402 70 422 4.50e-133 388
Msa0082790 MtrunA17_Chr2g0315641 50.838 358 143 6 50 402 42 371 1.39e-119 352
Msa0082790 MtrunA17_Chr2g0315651 45.706 361 158 9 50 402 37 367 4.68e-95 289
Msa0082790 MtrunA17_Chr8g0373361 40.625 416 205 15 1 395 11 405 1.21e-82 258
Msa0082790 MtrunA17_Chr8g0373331 33.415 407 196 10 1 393 1 346 4.71e-61 201
Msa0082790 MtrunA17_Chr8g0373341 33.333 399 180 13 1 392 1 320 9.13e-47 162
Msa0082790 MtrunA17_Chr1g0156151 53.521 142 62 1 65 202 66 207 4.30e-45 155
Msa0082790 MtrunA17_Chr8g0373351 35.161 310 120 8 99 394 44 286 3.51e-43 152
Msa0082790 MtrunA17_Chr3g0091401 38.776 98 54 1 92 189 8 99 5.62e-14 67.8
Msa0082790 MtrunA17_Chr2g0334041 50.000 62 24 1 340 401 305 359 1.71e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082790 AT2G47900.3 72.222 414 96 6 1 402 1 407 0.0 588
Msa0082790 AT2G47900.2 72.397 413 96 6 1 402 1 406 0.0 588
Msa0082790 AT2G47900.1 72.397 413 96 6 1 402 1 406 0.0 588
Msa0082790 AT5G18680.1 58.840 362 129 7 50 402 39 389 7.22e-147 422
Msa0082790 AT3G06380.1 55.802 405 151 9 1 402 1 380 4.75e-146 420
Msa0082790 AT1G43640.1 48.975 439 177 11 1 402 1 429 1.25e-140 408
Msa0082790 AT1G76900.2 47.380 458 182 9 1 402 1 455 2.40e-138 403
Msa0082790 AT1G76900.1 47.380 458 182 9 1 402 1 455 2.40e-138 403
Msa0082790 AT1G76900.3 47.380 458 182 9 1 402 1 455 2.40e-138 403
Msa0082790 AT1G25280.1 48.661 448 181 7 1 402 1 445 3.76e-137 399
Msa0082790 AT2G18280.2 50.990 404 185 6 1 402 1 393 3.02e-134 390
Msa0082790 AT2G18280.1 50.990 404 185 6 1 402 1 393 3.02e-134 390
Msa0082790 AT1G47270.3 53.117 369 149 5 42 402 36 388 1.72e-133 388
Msa0082790 AT1G47270.1 53.117 369 149 5 42 402 61 413 2.86e-133 389
Msa0082790 AT1G47270.2 53.117 369 149 5 42 402 60 412 2.95e-133 389
Msa0082790 AT1G43640.2 51.359 368 147 7 62 402 1 363 7.03e-130 378
Msa0082790 AT5G18680.2 58.940 302 105 6 109 402 7 297 1.02e-115 340
Msa0082790 AT1G53320.1 49.036 363 152 6 48 402 42 379 4.74e-113 336
Msa0082790 AT3G06380.2 59.247 292 109 5 113 402 5 288 8.76e-112 329
Msa0082790 AT1G25280.3 51.111 270 93 5 169 402 1 267 1.17e-83 256
Msa0082790 AT1G25280.2 51.111 270 93 5 169 402 1 267 1.17e-83 256
Msa0082790 AT1G61940.2 70.930 86 25 0 53 138 1 86 4.34e-40 144
Msa0082790 AT1G61940.1 72.131 61 17 0 53 113 1 61 1.38e-24 101
Msa0082790 AT1G61940.1 48.000 100 28 5 248 346 102 178 1.29e-12 67.8

Find 161 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATCATTTCTCTAAATT+TGG 0.095614 1_2:-61733937 Msa0082790:CDS
GATGCACACCCTCCAATTTA+TGG 0.187148 1_2:-61733750 Msa0082790:CDS
GCAAATCTGTCTCCATAAAT+TGG 0.193737 1_2:+61733738 None:intergenic
TCGCTTATATACAAAATAAA+AGG 0.198604 1_2:+61732678 None:intergenic
TGGTAACAGATCAAACTTTC+TGG 0.205085 1_2:-61733793 Msa0082790:intron
AATTGGGTGGAGTTGGAATT+AGG 0.226753 1_2:-61735878 Msa0082790:five_prime_UTR
CAGCTATGGTTTAGAAGAAT+TGG 0.255976 1_2:-61735926 Msa0082790:five_prime_UTR
ACTTTGTACCAATTGAATAT+TGG 0.258825 1_2:+61732439 None:intergenic
CTCATATGATCTGAATGTTT+TGG 0.268134 1_2:-61733637 Msa0082790:CDS
TTAGGTTAACGATGTCATTT+AGG 0.284142 1_2:-61735860 Msa0082790:exon
TCGCGTGCGCCGGTGTTTGC+AGG 0.297366 1_2:-61735614 Msa0082790:CDS
ATGTATGTACTTGCCTGCTT+AGG 0.333120 1_2:-61732488 Msa0082790:three_prime_UTR
AAGGGATTTGACGTGAAATT+CGG 0.342997 1_2:-61735819 Msa0082790:CDS
GAAAATGTCATTCTGCAGTT+TGG 0.348950 1_2:-61733057 Msa0082790:CDS
ATTTAGTAGAATTGAGGAAT+TGG 0.350714 1_2:-61735895 Msa0082790:five_prime_UTR
TCACAAACCAATTGCATCTA+AGG 0.355657 1_2:+61732552 None:intergenic
TGCATCATACACTGTAAATT+TGG 0.359668 1_2:+61733767 None:intergenic
ATTGAGGAATTGGGTGGAGT+TGG 0.377499 1_2:-61735885 Msa0082790:five_prime_UTR
TTTAGTAGAATTGAGGAATT+GGG 0.386629 1_2:-61735894 Msa0082790:five_prime_UTR
CAATCACTCACAAGCAATCT+TGG 0.389643 1_2:+61732945 None:intergenic
ATTGGCCCTCACAGTATTGC+AGG 0.390301 1_2:-61732775 Msa0082790:three_prime_UTR
TGTGTCTGTTTGATAGCTTT+TGG 0.398409 1_2:-61732519 Msa0082790:three_prime_UTR
TAGGATTATGCAATGTGTTA+TGG 0.402541 1_2:-61733394 Msa0082790:CDS
AAGATTATCCAATATTCAAT+TGG 0.403254 1_2:-61732447 Msa0082790:three_prime_UTR
CAGTATTGCAGGTCTGATAT+AGG 0.405155 1_2:-61732764 Msa0082790:three_prime_UTR
CCTGCCTCAGCTGTTGAACC+TGG 0.411820 1_2:-61733363 Msa0082790:CDS
GACAGGGAATGTCAACTTGC+TGG 0.412110 1_2:+61735545 None:intergenic
AGGGATTTGACGTGAAATTC+GGG 0.417694 1_2:-61735818 Msa0082790:CDS
ATGGGTTGAGTCAGAGTTGT+TGG 0.417839 1_2:-61735722 Msa0082790:CDS
GACAAGTGCTACCTGCTTCA+AGG 0.422783 1_2:+61735521 None:intergenic
TAGTTTCCTGCAGGAACTCT+TGG 0.422898 1_2:+61733675 None:intergenic
AAAACACAAAATACAACATA+TGG 0.429929 1_2:+61732625 None:intergenic
GATTGCTTGTGAGTGATTGC+TGG 0.433585 1_2:-61732941 Msa0082790:exon
TGCGTCGGGGCCACACCTCC+AGG 0.436166 1_2:+61733345 None:intergenic
TTATCAAAGGTGCTGCTGAT+TGG 0.436264 1_2:+61733241 None:intergenic
GCGCCGGTGTTTGCAGGAGT+TGG 0.436346 1_2:-61735608 Msa0082790:CDS
ACGGTAAAGGGTAGAGAAGA+AGG 0.436424 1_2:+61736233 None:intergenic
ACAACGACCTTAGATGCAAT+TGG 0.442451 1_2:-61732559 Msa0082790:three_prime_UTR
TGTTATTGCCAATGGTGCTT+TGG 0.443517 1_2:-61735754 Msa0082790:CDS
GAAGAAATTGAGTCTGCGTC+GGG 0.444561 1_2:+61733331 None:intergenic
GGTAACAGATCAAACTTTCT+GGG 0.446463 1_2:-61733792 Msa0082790:intron
TTGAGGTTTCAGATGATACT+TGG 0.450054 1_2:-61735656 Msa0082790:CDS
AGCTATCAAACAGACACAAC+TGG 0.452900 1_2:+61732524 None:intergenic
ATAACACATTGCATAATCCT+AGG 0.454350 1_2:+61733396 None:intergenic
GGTGCTTTGGTGATTGATGA+TGG 0.458578 1_2:-61735741 Msa0082790:CDS
AATGCTTCAAAGGCAGAGAT+TGG 0.458777 1_2:+61732994 None:intergenic
CTGTTGTTCAATCACTCTGA+TGG 0.465449 1_2:-61736144 Msa0082790:five_prime_UTR
TGCTGGTGTTTGAACTTCAA+TGG 0.466360 1_2:-61733156 Msa0082790:CDS
GCTACCTGCTTCAAGGAGAC+AGG 0.468323 1_2:+61735528 None:intergenic
TGAGTTGTTGCAGAGAGTGC+GGG 0.471120 1_2:+61736178 None:intergenic
GAGACTTAGCCTGGTGGTGC+GGG 0.471988 1_2:+61733710 None:intergenic
CCAGGTTCAACAGCTGAGGC+AGG 0.472095 1_2:+61733363 None:intergenic
AATATTGGATAATCTTTGAA+AGG 0.473129 1_2:+61732454 None:intergenic
ATACAAAATAAAAGGGAGAA+GGG 0.473379 1_2:+61732686 None:intergenic
AGCTATGGTTTAGAAGAATT+GGG 0.473724 1_2:-61735925 Msa0082790:five_prime_UTR
TGTATGTACTTGCCTGCTTA+GGG 0.475392 1_2:-61732487 Msa0082790:three_prime_UTR
CATCATGCAGCCTGGTCCAA+GGG 0.476151 1_2:-61734280 Msa0082790:intron
CGAATAACACAACAAAGACT+TGG 0.477158 1_2:+61732410 None:intergenic
TACAAAATAAAAGGGAGAAG+GGG 0.477609 1_2:+61732687 None:intergenic
GAAGGAGTAGCACCTATGTT+GGG 0.479960 1_2:-61733902 Msa0082790:CDS
GAGTATGATCATGGATAGGA+AGG 0.482584 1_2:-61735838 Msa0082790:CDS
TTGTGAGTGATTGCTGGAAC+AGG 0.483302 1_2:-61732935 Msa0082790:intron
GATCTGAAGAACGAGATAGA+TGG 0.483319 1_2:+61733288 None:intergenic
TGAAGTTCAAACACCAGCAT+TGG 0.484021 1_2:+61733160 None:intergenic
CAAAGGCAGAGATTGGATAC+TGG 0.485873 1_2:+61733001 None:intergenic
AAGTTAATTTAGTAGAATTG+AGG 0.486220 1_2:-61735901 Msa0082790:five_prime_UTR
ATCAATCACCAAAGCACCAT+TGG 0.486769 1_2:+61735746 None:intergenic
GTCATTTAGGAGTATGATCA+TGG 0.487718 1_2:-61735847 Msa0082790:CDS
CACTTGCTTGAGACTTAGCC+TGG 0.491047 1_2:+61733701 None:intergenic
TGGAGTTTCTGAGGAGGCCC+AGG 0.493680 1_2:-61733079 Msa0082790:CDS
CGCTTATATACAAAATAAAA+GGG 0.493916 1_2:+61732679 None:intergenic
AAGAATGTTGTCGCGTGCGC+CGG 0.493919 1_2:-61735624 Msa0082790:CDS
AGCTGTTGAACCTGGAGGTG+TGG 0.496026 1_2:-61733355 Msa0082790:CDS
ATGAGAGAGCCCCTTGGACC+AGG 0.496405 1_2:+61734270 None:intergenic
TGATTGAACAACAGAAATTG+AGG 0.506055 1_2:+61736153 None:intergenic
TAAAGGGTAGAGAAGAAGGT+TGG 0.512987 1_2:+61736237 None:intergenic
TCAATCACTCTGATGGAAGA+AGG 0.514260 1_2:-61736137 Msa0082790:five_prime_UTR
GTGCTTTGGTGATTGATGAT+GGG 0.516000 1_2:-61735740 Msa0082790:CDS
TCATCATGCAGCCTGGTCCA+AGG 0.523744 1_2:-61734281 Msa0082790:intron
CTTTGATAAGTCAAAATGAT+GGG 0.523813 1_2:-61733227 Msa0082790:CDS
GGAATGTAGCAACCCTAAGC+AGG 0.528589 1_2:+61732475 None:intergenic
GTTGCAGAGAGTGCGGGGAA+AGG 0.530528 1_2:+61736184 None:intergenic
AGAAGGAGTAGCACCTATGT+TGG 0.530821 1_2:-61733903 Msa0082790:CDS
GCACATCCCTCAAAAGCTCA+TGG 0.537457 1_2:+61735688 None:intergenic
TTGCAAAGTCCCGCACCACC+AGG 0.537675 1_2:-61733719 Msa0082790:CDS
TATACAAAATAAAAGGGAGA+AGG 0.538868 1_2:+61732685 None:intergenic
TTCAACAGCTGAGGCAGGGA+TGG 0.540786 1_2:+61733368 None:intergenic
ACAAAATAAAAGGGAGAAGG+GGG 0.542378 1_2:+61732688 None:intergenic
GCTTTCTGTTTAGTCCAACC+CGG 0.543246 1_2:-61732731 Msa0082790:three_prime_UTR
AGTAAAGTGAGAAACGGTAA+AGG 0.543490 1_2:+61736220 None:intergenic
ATTCCCTGTCTCCTTGAAGC+AGG 0.548762 1_2:-61735532 Msa0082790:intron
CAGATGATACTTGGCCGACT+CGG 0.549792 1_2:-61735647 Msa0082790:CDS
CACATCCCTCAAAAGCTCAT+GGG 0.551644 1_2:+61735689 None:intergenic
GCATATTGCAAATGCTTCAA+AGG 0.553851 1_2:+61732984 None:intergenic
CCTTTGATAAGTCAAAATGA+TGG 0.555873 1_2:-61733228 Msa0082790:CDS
AAAATGTTAACAGGGGCCCT+AGG 0.556228 1_2:-61733413 Msa0082790:intron
TGGGTTGAGTCAGAGTTGTT+GGG 0.556484 1_2:-61735721 Msa0082790:CDS
AAGGGGAGAGACTTAGAAGC+CGG 0.556618 1_2:+61732712 None:intergenic
GGATGTGCTTATGAGAATTG+AGG 0.557422 1_2:-61735673 Msa0082790:CDS
ATACCTCAACTTCCCAACAT+AGG 0.558903 1_2:+61733890 None:intergenic
GTCAACTTGCTGGACAATTG+AGG 0.559973 1_2:+61735555 None:intergenic
CACTGAATGAGAGAGCCCCT+TGG 0.561004 1_2:+61734264 None:intergenic
TCTTGGTGTCAAAGCTGCTA+AGG 0.561466 1_2:+61732962 None:intergenic
GAGAAATGATATAGTCAGTG+TGG 0.564360 1_2:+61733946 None:intergenic
GTAAAGTGAGAAACGGTAAA+GGG 0.565184 1_2:+61736221 None:intergenic
AATCTGTCTCCATAAATTGG+AGG 0.567458 1_2:+61733741 None:intergenic
TTTGACGTGAAATTCGGGTA+TGG 0.568681 1_2:-61735813 Msa0082790:CDS
TGATTGGAGATTCTCTGAGC+GGG 0.569183 1_2:+61733257 None:intergenic
GCACCTATGTTGGGAAGTTG+AGG 0.569372 1_2:-61733893 Msa0082790:intron
CAATCACTCTGATGGAAGAA+GGG 0.569385 1_2:-61736136 Msa0082790:five_prime_UTR
AGGCAGAGTAAAGTGAGAAA+CGG 0.569573 1_2:+61736214 None:intergenic
TGCATTATATTTAACAGACA+TGG 0.571593 1_2:-61732649 Msa0082790:three_prime_UTR
TGAAGAAATTGAGTCTGCGT+CGG 0.573052 1_2:+61733330 None:intergenic
GGTCGTTGTCTACAATCTCA+TGG 0.574634 1_2:+61732573 None:intergenic
ATTCTGCAGTTTGGAAAAGT+CGG 0.574704 1_2:-61733048 Msa0082790:CDS
GTGCGGGGAAAGGAGAGAAG+AGG 0.577607 1_2:+61736194 None:intergenic
TCATATGAGACATGCACGAT+GGG 0.577709 1_2:+61733651 None:intergenic
GAGAGACTTAGAAGCCGGGT+TGG 0.578090 1_2:+61732717 None:intergenic
TTGAGTTGTTGCAGAGAGTG+CGG 0.578891 1_2:+61736177 None:intergenic
AAGTCAAAATGATGGGGAGC+TGG 0.581065 1_2:-61733220 Msa0082790:CDS
TGGAGTTGTTCATGCCACCT+AGG 0.583552 1_2:+61733180 None:intergenic
TTTGCAGCCTCAACTGATGA+CGG 0.583581 1_2:-61734008 Msa0082790:intron
GGCATGAACAACTCCAATGC+TGG 0.585250 1_2:-61733173 Msa0082790:CDS
TGAGACTTAGCCTGGTGGTG+CGG 0.585690 1_2:+61733709 None:intergenic
ACGATGGGATAGTTTCCTGC+AGG 0.585969 1_2:+61733666 None:intergenic
CTGTGAGGGCCAATTCCACC+CGG 0.588002 1_2:+61732784 None:intergenic
GATGTTAATGTTATTGCCAA+TGG 0.594465 1_2:-61735762 Msa0082790:CDS
ATCTGTCTCCATAAATTGGA+GGG 0.597162 1_2:+61733742 None:intergenic
ATTTGGATGATGTGTCAAGA+AGG 0.597180 1_2:-61733920 Msa0082790:CDS
CTACCTGCTTCAAGGAGACA+GGG 0.598753 1_2:+61735529 None:intergenic
AGGGGAGAGACTTAGAAGCC+GGG 0.599238 1_2:+61732713 None:intergenic
GTGTCTCCAAGAGTTCCTGC+AGG 0.601279 1_2:-61733681 Msa0082790:CDS
GACACTTGCGTGCAGCAAGA+AGG 0.601304 1_2:+61733979 None:intergenic
CAGGTTCAACAGCTGAGGCA+GGG 0.604724 1_2:+61733364 None:intergenic
GAATAACACAACAAAGACTT+GGG 0.605838 1_2:+61732411 None:intergenic
AGTAGAATTGAGGAATTGGG+TGG 0.605987 1_2:-61735891 Msa0082790:five_prime_UTR
GAACTTGCCGTCATCAGTTG+AGG 0.606120 1_2:+61734001 None:intergenic
GATTGGATACTGGTAATCCA+TGG 0.610280 1_2:+61733011 None:intergenic
AGAAATGATATAGTCAGTGT+GGG 0.610923 1_2:+61733947 None:intergenic
GCCTCAGCTGTTGAACCTGG+AGG 0.611858 1_2:-61733360 Msa0082790:CDS
TTAGGAGTATGATCATGGAT+AGG 0.615050 1_2:-61735842 Msa0082790:CDS
AACTTGCTGGACAATTGAGG+AGG 0.616449 1_2:+61735558 None:intergenic
TCAGACCTGCAATACTGTGA+GGG 0.617106 1_2:+61732770 None:intergenic
TAACACATTGCATAATCCTA+GGG 0.617287 1_2:+61733397 None:intergenic
ATCATGCAGCCTGGTCCAAG+GGG 0.619178 1_2:-61734279 Msa0082790:intron
ACCTCCAGGTTCAACAGCTG+AGG 0.623409 1_2:+61733359 None:intergenic
CTGATTGGAGATTCTCTGAG+CGG 0.624740 1_2:+61733256 None:intergenic
ATCATATGAGACATGCACGA+TGG 0.626290 1_2:+61733650 None:intergenic
ACATCCCTCAAAAGCTCATG+GGG 0.631071 1_2:+61735690 None:intergenic
AGTATGATCATGGATAGGAA+GGG 0.631347 1_2:-61735837 Msa0082790:CDS
GCAGTTTGGAAAAGTCGGAA+AGG 0.632984 1_2:-61733043 Msa0082790:CDS
GAGTTGTTGCAGAGAGTGCG+GGG 0.638794 1_2:+61736179 None:intergenic
CGGAAAGGATGTGTTCACCA+TGG 0.642135 1_2:-61733028 Msa0082790:CDS
TGCTATATTAAACGAAATCG+CGG 0.643232 1_2:-61734243 Msa0082790:CDS
GCGACAACATTCTTCCGAGT+CGG 0.645949 1_2:+61735633 None:intergenic
TTTGATAAGTCAAAATGATG+GGG 0.648482 1_2:-61733226 Msa0082790:CDS
GAGTTGGAGAGAAATTGTGA+AGG 0.664353 1_2:-61735592 Msa0082790:CDS
TCTCCAACTCCTGCAAACAC+CGG 0.665494 1_2:+61735605 None:intergenic
ATCAGACCTGCAATACTGTG+AGG 0.677842 1_2:+61732769 None:intergenic
AAGAAATTGAGTCTGCGTCG+GGG 0.697436 1_2:+61733332 None:intergenic
TTGCTTGAGACTTAGCCTGG+TGG 0.709949 1_2:+61733704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGAATTTTGAAAATTAAAA+TGG + chr1_2:61732560-61732579 None:intergenic 15.0%
!! AAAAAAATAAAAGATACATC+GGG + chr1_2:61733119-61733138 None:intergenic 15.0%
!! GAAAAAAATAAAAGATACAT+CGG + chr1_2:61733120-61733139 None:intergenic 15.0%
!! TGAGAAAAAGATAATAAATT+TGG + chr1_2:61734395-61734414 None:intergenic 15.0%
!! TAAATAAGAATTCAATATCA+GGG + chr1_2:61735154-61735173 None:intergenic 15.0%
!! AAGTTAATTTAGTAGAATTG+AGG - chr1_2:61732708-61732727 Msa0082790:three_prime_UTR 20.0%
!! AATTGTTCGTTTACAAAAAT+AGG + chr1_2:61733646-61733665 None:intergenic 20.0%
!! AAATCAAATCAACATTACAA+AGG + chr1_2:61734583-61734602 None:intergenic 20.0%
!! CTATATCATTTCTCTAAATT+TGG - chr1_2:61734672-61734691 Msa0082790:intron 20.0%
!! CTAAATAAGAATTCAATATC+AGG + chr1_2:61735155-61735174 None:intergenic 20.0%
!! TTAGTTAACAAAATGTTAAC+AGG - chr1_2:61735187-61735206 Msa0082790:intron 20.0%
!! TAGTTAACAAAATGTTAACA+GGG - chr1_2:61735188-61735207 Msa0082790:intron 20.0%
!! CGCTTATATACAAAATAAAA+GGG + chr1_2:61735933-61735952 None:intergenic 20.0%
!! TCGCTTATATACAAAATAAA+AGG + chr1_2:61735934-61735953 None:intergenic 20.0%
!! AAAACACAAAATACAACATA+TGG + chr1_2:61735987-61736006 None:intergenic 20.0%
!! AATATTGGATAATCTTTGAA+AGG + chr1_2:61736158-61736177 None:intergenic 20.0%
!! AAGATTATCCAATATTCAAT+TGG - chr1_2:61736162-61736181 Msa0082790:five_prime_UTR 20.0%
! ACAAAAACTAATTTCCATCA+GGG + chr1_2:61732582-61732601 None:intergenic 25.0%
! TACAAAAACTAATTTCCATC+AGG + chr1_2:61732583-61732602 None:intergenic 25.0%
!! TGATTTTTATTCATCAGCTA+TGG - chr1_2:61732669-61732688 Msa0082790:three_prime_UTR 25.0%
! ATTTAGTAGAATTGAGGAAT+TGG - chr1_2:61732714-61732733 Msa0082790:three_prime_UTR 25.0%
! TTTAGTAGAATTGAGGAATT+GGG - chr1_2:61732715-61732734 Msa0082790:three_prime_UTR 25.0%
!!! TTTTTTCTACTAAGATGCAA+TGG - chr1_2:61734112-61734131 Msa0082790:intron 25.0%
!! TTTCTCAACTTTTGTTCAAT+TGG - chr1_2:61734179-61734198 Msa0082790:intron 25.0%
!! TTCTCAACTTTTGTTCAATT+GGG - chr1_2:61734180-61734199 Msa0082790:intron 25.0%
!!! GTTTTATTCTTATCACACAA+AGG - chr1_2:61734249-61734268 Msa0082790:CDS 25.0%
! ACATCTTAAATCTAAATCTC+TGG + chr1_2:61734440-61734459 None:intergenic 25.0%
!! AGATTTAGATTTAAGATGTG+TGG - chr1_2:61734441-61734460 Msa0082790:intron 25.0%
! TCTTAATATCATACAAGTTG+AGG + chr1_2:61734531-61734550 None:intergenic 25.0%
! ATTATTACCTATTACCTTCT+GGG - chr1_2:61734770-61734789 Msa0082790:intron 25.0%
!! TCATATGATCTGAATGTTTT+GGG - chr1_2:61734973-61734992 Msa0082790:intron 25.0%
! CTAAGAAACAATCGATAAAA+GGG + chr1_2:61735097-61735116 None:intergenic 25.0%
! ACTAAGAAACAATCGATAAA+AGG + chr1_2:61735098-61735117 None:intergenic 25.0%
! AGTTAACAAAATGTTAACAG+GGG - chr1_2:61735189-61735208 Msa0082790:intron 25.0%
! CTTTGATAAGTCAAAATGAT+GGG - chr1_2:61735382-61735401 Msa0082790:intron 25.0%
! TTTGATAAGTCAAAATGATG+GGG - chr1_2:61735383-61735402 Msa0082790:intron 25.0%
! ATACAAAATAAAAGGGAGAA+GGG + chr1_2:61735926-61735945 None:intergenic 25.0%
! TATACAAAATAAAAGGGAGA+AGG + chr1_2:61735927-61735946 None:intergenic 25.0%
! TGCATTATATTTAACAGACA+TGG - chr1_2:61735960-61735979 Msa0082790:five_prime_UTR 25.0%
!!! CAAACCAACTTATGTTTTTT+TGG - chr1_2:61736013-61736032 Msa0082790:five_prime_UTR 25.0%
! ACTTTGTACCAATTGAATAT+TGG + chr1_2:61736173-61736192 None:intergenic 25.0%
TGATTGAACAACAGAAATTG+AGG + chr1_2:61732459-61732478 None:intergenic 30.0%
! GCAATTTTCGTCAAATTTCT+CGG - chr1_2:61732508-61732527 Msa0082790:three_prime_UTR 30.0%
! ATTTTCAAAATTCACCCTGA+TGG - chr1_2:61732565-61732584 Msa0082790:three_prime_UTR 30.0%
! AGTTTTTGTACATGCAATTG+TGG - chr1_2:61732593-61732612 Msa0082790:three_prime_UTR 30.0%
AGCTATGGTTTAGAAGAATT+GGG - chr1_2:61732684-61732703 Msa0082790:three_prime_UTR 30.0%
! TTAGGTTAACGATGTCATTT+AGG - chr1_2:61732749-61732768 Msa0082790:three_prime_UTR 30.0%
GATGTTAATGTTATTGCCAA+TGG - chr1_2:61732847-61732866 Msa0082790:intron 30.0%
! AAACCAAATATTTGTTGAGC+AGG - chr1_2:61733393-61733412 Msa0082790:CDS 30.0%
ATTCCTGCTCAACAAATATT+TGG + chr1_2:61733399-61733418 None:intergenic 30.0%
! AAATATTTGTTGAGCAGGAA+TGG - chr1_2:61733398-61733417 Msa0082790:CDS 30.0%
TAACTCACTCTATTTGAATG+AGG + chr1_2:61733518-61733537 None:intergenic 30.0%
! CATTTTTGTAAATGAAAGCC+AGG - chr1_2:61733571-61733590 Msa0082790:intron 30.0%
TGCTATATTAAACGAAATCG+CGG - chr1_2:61734366-61734385 Msa0082790:intron 30.0%
TTCTATATTCTGTGACACAT+GGG - chr1_2:61734473-61734492 Msa0082790:intron 30.0%
AGAAATGATATAGTCAGTGT+GGG + chr1_2:61734665-61734684 None:intergenic 30.0%
TAATCAACAAGTCATGTCAT+AGG + chr1_2:61734754-61734773 None:intergenic 30.0%
GATTATTACCTATTACCTTC+TGG - chr1_2:61734769-61734788 Msa0082790:intron 30.0%
!!! GAAATCACTTTTTGGTTCAT+TGG - chr1_2:61734796-61734815 Msa0082790:intron 30.0%
TGCATCATACACTGTAAATT+TGG + chr1_2:61734845-61734864 None:intergenic 30.0%
! CTCATATGATCTGAATGTTT+TGG - chr1_2:61734972-61734991 Msa0082790:intron 30.0%
TTTAGGTAAAGAGAATATCG+CGG - chr1_2:61735032-61735051 Msa0082790:intron 30.0%
TAACACATTGCATAATCCTA+GGG + chr1_2:61735215-61735234 None:intergenic 30.0%
ATAACACATTGCATAATCCT+AGG + chr1_2:61735216-61735235 None:intergenic 30.0%
TAGGATTATGCAATGTGTTA+TGG - chr1_2:61735215-61735234 Msa0082790:intron 30.0%
!!! CCATCATTTTGACTTATCAA+AGG + chr1_2:61735384-61735403 None:intergenic 30.0%
CCTTTGATAAGTCAAAATGA+TGG - chr1_2:61735381-61735400 Msa0082790:intron 30.0%
TTCAGTTAAAAATTTCCAGC+TGG - chr1_2:61735491-61735510 Msa0082790:intron 30.0%
!!! ACATAGTTGCTGATTTTACT+TGG - chr1_2:61735792-61735811 Msa0082790:CDS 30.0%
TACAAAATAAAAGGGAGAAG+GGG + chr1_2:61735925-61735944 None:intergenic 30.0%
ATGGCCAAAAAAACATAAGT+TGG + chr1_2:61736020-61736039 None:intergenic 30.0%
GAATAACACAACAAAGACTT+GGG + chr1_2:61736201-61736220 None:intergenic 30.0%
GTAAAGTGAGAAACGGTAAA+GGG + chr1_2:61732391-61732410 None:intergenic 35.0%
AGTAAAGTGAGAAACGGTAA+AGG + chr1_2:61732392-61732411 None:intergenic 35.0%
CAGCTATGGTTTAGAAGAAT+TGG - chr1_2:61732683-61732702 Msa0082790:three_prime_UTR 35.0%
! GTCATTTAGGAGTATGATCA+TGG - chr1_2:61732762-61732781 Msa0082790:three_prime_UTR 35.0%
! TTAGGAGTATGATCATGGAT+AGG - chr1_2:61732767-61732786 Msa0082790:three_prime_UTR 35.0%
AGTATGATCATGGATAGGAA+GGG - chr1_2:61732772-61732791 Msa0082790:three_prime_UTR 35.0%
AAGGGATTTGACGTGAAATT+CGG - chr1_2:61732790-61732809 Msa0082790:three_prime_UTR 35.0%
TTGAGGTTTCAGATGATACT+TGG - chr1_2:61732953-61732972 Msa0082790:CDS 35.0%
!! ACATCCTTTTTGAGCTGAAT+TGG - chr1_2:61733213-61733232 Msa0082790:CDS 35.0%
!! CATCCTTTTTGAGCTGAATT+GGG - chr1_2:61733214-61733233 Msa0082790:CDS 35.0%
AAACCCAATTCAGCTCAAAA+AGG + chr1_2:61733220-61733239 None:intergenic 35.0%
ACTCTATTTGAATGAGGTGT+GGG + chr1_2:61733512-61733531 None:intergenic 35.0%
GAGAGAACAAGAATGATTGT+TGG + chr1_2:61733692-61733711 None:intergenic 35.0%
TAACTCATTCTCTTTGAGTG+AGG - chr1_2:61733714-61733733 Msa0082790:CDS 35.0%
TCATACCTGCTCAACAAATA+TGG - chr1_2:61733794-61733813 Msa0082790:intron 35.0%
CATACCTGCTCAACAAATAT+GGG - chr1_2:61733795-61733814 Msa0082790:intron 35.0%
! AAAACCCATATTTGTTGAGC+AGG + chr1_2:61733802-61733821 None:intergenic 35.0%
! TACATCCTTTTGAGCTGAAA+TGG + chr1_2:61733991-61734010 None:intergenic 35.0%
!! TTATTTCGAGTTACAGGCAA+TGG + chr1_2:61734073-61734092 None:intergenic 35.0%
!! CAATGCTTATTTCGAGTTAC+AGG + chr1_2:61734079-61734098 None:intergenic 35.0%
TGCTTAAACTCATGCTACAT+TGG + chr1_2:61734216-61734235 None:intergenic 35.0%
! CTTTTTCTCAGTTTGAACCA+AGG - chr1_2:61734405-61734424 Msa0082790:intron 35.0%
GTTCTATATTCTGTGACACA+TGG - chr1_2:61734472-61734491 Msa0082790:intron 35.0%
! TCATACAAGTTGAGGTTACA+AGG + chr1_2:61734523-61734542 None:intergenic 35.0%
GAGAAATGATATAGTCAGTG+TGG + chr1_2:61734666-61734685 None:intergenic 35.0%
ATTTGGATGATGTGTCAAGA+AGG - chr1_2:61734689-61734708 Msa0082790:intron 35.0%
TGGTAACAGATCAAACTTTC+TGG - chr1_2:61734816-61734835 Msa0082790:intron 35.0%
GGTAACAGATCAAACTTTCT+GGG - chr1_2:61734817-61734836 Msa0082790:intron 35.0%
ATCTGTCTCCATAAATTGGA+GGG + chr1_2:61734870-61734889 None:intergenic 35.0%
AATCTGTCTCCATAAATTGG+AGG + chr1_2:61734871-61734890 None:intergenic 35.0%
GCAAATCTGTCTCCATAAAT+TGG + chr1_2:61734874-61734893 None:intergenic 35.0%
AAATAGAGCCAACTCTTGAA+AGG + chr1_2:61735131-61735150 None:intergenic 35.0%
TGTTAAAAAACAAGGCTCCT+AGG - chr1_2:61735412-61735431 Msa0082790:intron 35.0%
TCCTAAAAATGGAGTTTCTG+AGG - chr1_2:61735521-61735540 Msa0082790:intron 35.0%
!! TCCTCAGAAACTCCATTTTT+AGG + chr1_2:61735525-61735544 None:intergenic 35.0%
! TAAAAATGGAGTTTCTGAGG+AGG - chr1_2:61735524-61735543 Msa0082790:intron 35.0%
GAAAATGTCATTCTGCAGTT+TGG - chr1_2:61735552-61735571 Msa0082790:CDS 35.0%
ATTCTGCAGTTTGGAAAAGT+CGG - chr1_2:61735561-61735580 Msa0082790:CDS 35.0%
GCATATTGCAAATGCTTCAA+AGG + chr1_2:61735628-61735647 None:intergenic 35.0%
GTGATCGTTGAGATTAATGA+AGG - chr1_2:61735766-61735785 Msa0082790:CDS 35.0%
ACAAAATAAAAGGGAGAAGG+GGG + chr1_2:61735924-61735943 None:intergenic 35.0%
TCACAAACCAATTGCATCTA+AGG + chr1_2:61736060-61736079 None:intergenic 35.0%
!! TGTGTCTGTTTGATAGCTTT+TGG - chr1_2:61736090-61736109 Msa0082790:five_prime_UTR 35.0%
CGAATAACACAACAAAGACT+TGG + chr1_2:61736202-61736221 None:intergenic 35.0%
TAAAGGGTAGAGAAGAAGGT+TGG + chr1_2:61732375-61732394 None:intergenic 40.0%
AGGCAGAGTAAAGTGAGAAA+CGG + chr1_2:61732398-61732417 None:intergenic 40.0%
CTGTTGTTCAATCACTCTGA+TGG - chr1_2:61732465-61732484 Msa0082790:three_prime_UTR 40.0%
TCAATCACTCTGATGGAAGA+AGG - chr1_2:61732472-61732491 Msa0082790:three_prime_UTR 40.0%
CAATCACTCTGATGGAAGAA+GGG - chr1_2:61732473-61732492 Msa0082790:three_prime_UTR 40.0%
AGTAGAATTGAGGAATTGGG+TGG - chr1_2:61732718-61732737 Msa0082790:three_prime_UTR 40.0%
AATTGGGTGGAGTTGGAATT+AGG - chr1_2:61732731-61732750 Msa0082790:three_prime_UTR 40.0%
GAGTATGATCATGGATAGGA+AGG - chr1_2:61732771-61732790 Msa0082790:three_prime_UTR 40.0%
AGGGATTTGACGTGAAATTC+GGG - chr1_2:61732791-61732810 Msa0082790:three_prime_UTR 40.0%
TTTGACGTGAAATTCGGGTA+TGG - chr1_2:61732796-61732815 Msa0082790:intron 40.0%
TGTTATTGCCAATGGTGCTT+TGG - chr1_2:61732855-61732874 Msa0082790:intron 40.0%
! ATCAATCACCAAAGCACCAT+TGG + chr1_2:61732866-61732885 None:intergenic 40.0%
! GTGCTTTGGTGATTGATGAT+GGG - chr1_2:61732869-61732888 Msa0082790:intron 40.0%
GGATGTGCTTATGAGAATTG+AGG - chr1_2:61732936-61732955 Msa0082790:exon 40.0%
GAGTTGGAGAGAAATTGTGA+AGG - chr1_2:61733017-61733036 Msa0082790:CDS 40.0%
! AGCTCAGAGTAGTTTGTGAT+TGG - chr1_2:61733186-61733205 Msa0082790:CDS 40.0%
GTTTGATGTCATTCTCACGT+TGG - chr1_2:61733352-61733371 Msa0082790:CDS 40.0%
TTGTTATCTTGGTTGTTGCG+TGG - chr1_2:61733433-61733452 Msa0082790:intron 40.0%
GTTAAGAATTCACCGCATCA+CGG + chr1_2:61733490-61733509 None:intergenic 40.0%
CACTCTATTTGAATGAGGTG+TGG + chr1_2:61733513-61733532 None:intergenic 40.0%
GAGAGAGCAAGAATGATTGT+TGG - chr1_2:61733540-61733559 Msa0082790:intron 40.0%
!! GCAAGAATGATTGTTGGCTT+TGG - chr1_2:61733546-61733565 Msa0082790:intron 40.0%
GAAAGAGCAAGAATGTTTCC+TGG + chr1_2:61733592-61733611 None:intergenic 40.0%
TCACTAACTCTTGTTGAGTG+AGG - chr1_2:61733610-61733629 Msa0082790:intron 40.0%
TAACTCTTGTTGAGTGAGGT+TGG - chr1_2:61733614-61733633 Msa0082790:intron 40.0%
!! CTGTTACTTTGGTTGTTGTG+TGG + chr1_2:61733762-61733781 None:intergenic 40.0%
TGTTGAGCAGGTATGATTGA+GGG + chr1_2:61733790-61733809 None:intergenic 40.0%
TTGTTGAGCAGGTATGATTG+AGG + chr1_2:61733791-61733810 None:intergenic 40.0%
ATTCGATGCAACTCTTGCAT+TGG + chr1_2:61733841-61733860 None:intergenic 40.0%
! CCTTTTGAGCTGAAATGGTT+AGG + chr1_2:61733986-61734005 None:intergenic 40.0%
CCTAACCATTTCAGCTCAAA+AGG - chr1_2:61733983-61734002 Msa0082790:CDS 40.0%
! ACTAGCTTCCTTGTGAATAG+TGG - chr1_2:61734022-61734041 Msa0082790:intron 40.0%
TTCCTTGTGAATAGTGGCAT+TGG - chr1_2:61734028-61734047 Msa0082790:intron 40.0%
!! TGAATAGTGGCATTGGTGTA+AGG - chr1_2:61734035-61734054 Msa0082790:intron 40.0%
!! GTTATTTTCATCATGCAGCC+TGG - chr1_2:61734321-61734340 Msa0082790:intron 40.0%
ATATTCTGTGACACATGGGT+TGG - chr1_2:61734477-61734496 Msa0082790:intron 40.0%
ATACCTCAACTTCCCAACAT+AGG + chr1_2:61734722-61734741 None:intergenic 40.0%
TTTCAGACCCAGAAGGTAAT+AGG + chr1_2:61734780-61734799 None:intergenic 40.0%
AAAGTGATTTCAGACCCAGA+AGG + chr1_2:61734787-61734806 None:intergenic 40.0%
!! CTGGGTCTGAAATCACTTTT+TGG - chr1_2:61734788-61734807 Msa0082790:intron 40.0%
TCATATGAGACATGCACGAT+GGG + chr1_2:61734961-61734980 None:intergenic 40.0%
ATCATATGAGACATGCACGA+TGG + chr1_2:61734962-61734981 None:intergenic 40.0%
!! ATCTGAATGTTTTGGGCTCT+AGG - chr1_2:61734980-61734999 Msa0082790:intron 40.0%
CACTTGACGTATCTCTCTTT+AGG - chr1_2:61735015-61735034 Msa0082790:intron 40.0%
TGAAGAAATTGAGTCTGCGT+CGG + chr1_2:61735282-61735301 None:intergenic 40.0%
GATCTGAAGAACGAGATAGA+TGG + chr1_2:61735324-61735343 None:intergenic 40.0%
!! TTATCAAAGGTGCTGCTGAT+TGG + chr1_2:61735371-61735390 None:intergenic 40.0%
! GGAGCTGGTGTTAAAAAACA+AGG - chr1_2:61735404-61735423 Msa0082790:intron 40.0%
TAAAAAACAAGGCTCCTAGG+TGG - chr1_2:61735415-61735434 Msa0082790:intron 40.0%
TGAAGTTCAAACACCAGCAT+TGG + chr1_2:61735452-61735471 None:intergenic 40.0%
TGCTGGTGTTTGAACTTCAA+TGG - chr1_2:61735453-61735472 Msa0082790:intron 40.0%
CTGGTTGCTTCTCCTAAAAA+TGG - chr1_2:61735510-61735529 Msa0082790:intron 40.0%
! CTGCAGAATGACATTTTCCT+GGG + chr1_2:61735550-61735569 None:intergenic 40.0%
! ACTGCAGAATGACATTTTCC+TGG + chr1_2:61735551-61735570 None:intergenic 40.0%
GATTGGATACTGGTAATCCA+TGG + chr1_2:61735601-61735620 None:intergenic 40.0%
AATGCTTCAAAGGCAGAGAT+TGG + chr1_2:61735618-61735637 None:intergenic 40.0%
CAATCACTCACAAGCAATCT+TGG + chr1_2:61735667-61735686 None:intergenic 40.0%
!!! AGTTGCTGATTTTACTTGGC+AGG - chr1_2:61735796-61735815 Msa0082790:CDS 40.0%
!! TTTACTTGGCAGGTTTTAGC+CGG - chr1_2:61735806-61735825 Msa0082790:CDS 40.0%
CAGTATTGCAGGTCTGATAT+AGG - chr1_2:61735845-61735864 Msa0082790:CDS 40.0%
ACAACGACCTTAGATGCAAT+TGG - chr1_2:61736050-61736069 Msa0082790:five_prime_UTR 40.0%
AGCTATCAAACAGACACAAC+TGG + chr1_2:61736088-61736107 None:intergenic 40.0%
ATGTATGTACTTGCCTGCTT+AGG - chr1_2:61736121-61736140 Msa0082790:five_prime_UTR 40.0%
TGTATGTACTTGCCTGCTTA+GGG - chr1_2:61736122-61736141 Msa0082790:five_prime_UTR 40.0%
ACGGTAAAGGGTAGAGAAGA+AGG + chr1_2:61732379-61732398 None:intergenic 45.0%
! TTGAGTTGTTGCAGAGAGTG+CGG + chr1_2:61732435-61732454 None:intergenic 45.0%
ATTGAGGAATTGGGTGGAGT+TGG - chr1_2:61732724-61732743 Msa0082790:three_prime_UTR 45.0%
! GGTGCTTTGGTGATTGATGA+TGG - chr1_2:61732868-61732887 Msa0082790:intron 45.0%
! ATGGGTTGAGTCAGAGTTGT+TGG - chr1_2:61732887-61732906 Msa0082790:intron 45.0%
! TGGGTTGAGTCAGAGTTGTT+GGG - chr1_2:61732888-61732907 Msa0082790:intron 45.0%
ACATCCCTCAAAAGCTCATG+GGG + chr1_2:61732922-61732941 None:intergenic 45.0%
CACATCCCTCAAAAGCTCAT+GGG + chr1_2:61732923-61732942 None:intergenic 45.0%
!! AACTTGCTGGACAATTGAGG+AGG + chr1_2:61733054-61733073 None:intergenic 45.0%
!! GTCAACTTGCTGGACAATTG+AGG + chr1_2:61733057-61733076 None:intergenic 45.0%
TTGTTGAGCAGGAATGGTTG+AGG - chr1_2:61733404-61733423 Msa0082790:intron 45.0%
!! TGAGGAGTGGGTTGTTATCT+TGG - chr1_2:61733422-61733441 Msa0082790:intron 45.0%
!! TTGTTGAGTGAGGTTGGCTT+TGG - chr1_2:61733620-61733639 Msa0082790:intron 45.0%
TCTTTGAGTGAGGTGTGAGT+TGG - chr1_2:61733724-61733743 Msa0082790:CDS 45.0%
CTTTGAGTGAGGTGTGAGTT+GGG - chr1_2:61733725-61733744 Msa0082790:CDS 45.0%
GTTGAGCAGGTATGATTGAG+GGG + chr1_2:61733789-61733808 None:intergenic 45.0%
CACCAATGCCACTATTCACA+AGG + chr1_2:61734033-61734052 None:intergenic 45.0%
TTTGCAGCCTCAACTGATGA+CGG - chr1_2:61734601-61734620 Msa0082790:intron 45.0%
AGAAGGAGTAGCACCTATGT+TGG - chr1_2:61734706-61734725 Msa0082790:intron 45.0%
GAAGGAGTAGCACCTATGTT+GGG - chr1_2:61734707-61734726 Msa0082790:intron 45.0%
GATGCACACCCTCCAATTTA+TGG - chr1_2:61734859-61734878 Msa0082790:intron 45.0%
TAGTTTCCTGCAGGAACTCT+TGG + chr1_2:61734937-61734956 None:intergenic 45.0%
GTAAAGAGAATATCGCGGTC+TGG - chr1_2:61735037-61735056 Msa0082790:intron 45.0%
CCAACTCTTGAAAGGAAGGT+AGG + chr1_2:61735123-61735142 None:intergenic 45.0%
CCTACCTTCCTTTCAAGAGT+TGG - chr1_2:61735120-61735139 Msa0082790:intron 45.0%
AGAGCCAACTCTTGAAAGGA+AGG + chr1_2:61735127-61735146 None:intergenic 45.0%
AAAATGTTAACAGGGGCCCT+AGG - chr1_2:61735196-61735215 Msa0082790:intron 45.0%
AAGAAATTGAGTCTGCGTCG+GGG + chr1_2:61735280-61735299 None:intergenic 45.0%
GAAGAAATTGAGTCTGCGTC+GGG + chr1_2:61735281-61735300 None:intergenic 45.0%
TGATTGGAGATTCTCTGAGC+GGG + chr1_2:61735355-61735374 None:intergenic 45.0%
CTGATTGGAGATTCTCTGAG+CGG + chr1_2:61735356-61735375 None:intergenic 45.0%
! AAGTCAAAATGATGGGGAGC+TGG - chr1_2:61735389-61735408 Msa0082790:intron 45.0%
!! TTTTAGGAGAAGCAACCAGC+TGG + chr1_2:61735509-61735528 None:intergenic 45.0%
GCAGTTTGGAAAAGTCGGAA+AGG - chr1_2:61735566-61735585 Msa0082790:CDS 45.0%
CAAAGGCAGAGATTGGATAC+TGG + chr1_2:61735611-61735630 None:intergenic 45.0%
!! TCTTGGTGTCAAAGCTGCTA+AGG + chr1_2:61735650-61735669 None:intergenic 45.0%
GATTGCTTGTGAGTGATTGC+TGG - chr1_2:61735668-61735687 Msa0082790:CDS 45.0%
TTGTGAGTGATTGCTGGAAC+AGG - chr1_2:61735674-61735693 Msa0082790:CDS 45.0%
!! TTACTTGGCAGGTTTTAGCC+GGG - chr1_2:61735807-61735826 Msa0082790:CDS 45.0%
TCAGACCTGCAATACTGTGA+GGG + chr1_2:61735842-61735861 None:intergenic 45.0%
ATCAGACCTGCAATACTGTG+AGG + chr1_2:61735843-61735862 None:intergenic 45.0%
GCTTTCTGTTTAGTCCAACC+CGG - chr1_2:61735878-61735897 Msa0082790:five_prime_UTR 45.0%
TAAAAGGGAGAAGGGGGAAA+GGG + chr1_2:61735918-61735937 None:intergenic 45.0%
ATAAAAGGGAGAAGGGGGAA+AGG + chr1_2:61735919-61735938 None:intergenic 45.0%
GGTCGTTGTCTACAATCTCA+TGG + chr1_2:61736039-61736058 None:intergenic 45.0%
! TGAGTTGTTGCAGAGAGTGC+GGG + chr1_2:61732434-61732453 None:intergenic 50.0%
! ACATGCCCCATGAGCTTTTG+AGG - chr1_2:61732914-61732933 Msa0082790:intron 50.0%
! CATGCCCCATGAGCTTTTGA+GGG - chr1_2:61732915-61732934 Msa0082790:intron 50.0%
GCACATCCCTCAAAAGCTCA+TGG + chr1_2:61732924-61732943 None:intergenic 50.0%
CAGATGATACTTGGCCGACT+CGG - chr1_2:61732962-61732981 Msa0082790:CDS 50.0%
GCGACAACATTCTTCCGAGT+CGG + chr1_2:61732979-61732998 None:intergenic 50.0%
TCTCCAACTCCTGCAAACAC+CGG + chr1_2:61733007-61733026 None:intergenic 50.0%
GACAGGGAATGTCAACTTGC+TGG + chr1_2:61733067-61733086 None:intergenic 50.0%
ATTCCCTGTCTCCTTGAAGC+AGG - chr1_2:61733077-61733096 Msa0082790:CDS 50.0%
CTACCTGCTTCAAGGAGACA+GGG + chr1_2:61733083-61733102 None:intergenic 50.0%
GACAAGTGCTACCTGCTTCA+AGG + chr1_2:61733091-61733110 None:intergenic 50.0%
AGCAGGAATGGTTGAGGAGT+GGG - chr1_2:61733410-61733429 Msa0082790:intron 50.0%
ATCTTGGTTGTTGCGTGGCT+CGG - chr1_2:61733438-61733457 Msa0082790:intron 50.0%
CATCACGGAACAACCAAGGT+GGG + chr1_2:61733475-61733494 None:intergenic 50.0%
ACCTTGGTTGTTCCGTGATG+CGG - chr1_2:61733475-61733494 Msa0082790:intron 50.0%
AGCAGGTATGATTGAGGGGT+GGG + chr1_2:61733785-61733804 None:intergenic 50.0%
!! TGTGACACATGGGTTGGACT+GGG - chr1_2:61734483-61734502 Msa0082790:intron 50.0%
GAACTTGCCGTCATCAGTTG+AGG + chr1_2:61734611-61734630 None:intergenic 50.0%
GCACCTATGTTGGGAAGTTG+AGG - chr1_2:61734716-61734735 Msa0082790:intron 50.0%
TTGCTTGAGACTTAGCCTGG+TGG + chr1_2:61734908-61734927 None:intergenic 50.0%
CACTTGCTTGAGACTTAGCC+TGG + chr1_2:61734911-61734930 None:intergenic 50.0%
ACGATGGGATAGTTTCCTGC+AGG + chr1_2:61734946-61734965 None:intergenic 50.0%
TGGAGTTGTTCATGCCACCT+AGG + chr1_2:61735432-61735451 None:intergenic 50.0%
GGCATGAACAACTCCAATGC+TGG - chr1_2:61735436-61735455 Msa0082790:intron 50.0%
CGGAAAGGATGTGTTCACCA+TGG - chr1_2:61735581-61735600 Msa0082790:CDS 50.0%
!! AGGTTTTAGCCGGGTGGAAT+TGG - chr1_2:61735816-61735835 Msa0082790:CDS 50.0%
ATTGGCCCTCACAGTATTGC+AGG - chr1_2:61735834-61735853 Msa0082790:CDS 50.0%
AAGGGGAGAGACTTAGAAGC+CGG + chr1_2:61735900-61735919 None:intergenic 50.0%
AAAAGGGAGAAGGGGGAAAG+GGG + chr1_2:61735917-61735936 None:intergenic 50.0%
GGAATGTAGCAACCCTAAGC+AGG + chr1_2:61736137-61736156 None:intergenic 50.0%
! GAGTTGTTGCAGAGAGTGCG+GGG + chr1_2:61732433-61732452 None:intergenic 55.0%
AAGAATGTTGTCGCGTGCGC+CGG - chr1_2:61732985-61733004 Msa0082790:CDS 55.0%
GCTACCTGCTTCAAGGAGAC+AGG + chr1_2:61733084-61733103 None:intergenic 55.0%
GAGCAGGAATGGTTGAGGAG+TGG - chr1_2:61733409-61733428 Msa0082790:intron 55.0%
GGTGAATTCCCAACCCACCT+TGG - chr1_2:61733459-61733478 Msa0082790:intron 55.0%
! CGGAACAACCAAGGTGGGTT+GGG + chr1_2:61733470-61733489 None:intergenic 55.0%
ACGGAACAACCAAGGTGGGT+TGG + chr1_2:61733471-61733490 None:intergenic 55.0%
GCATCACGGAACAACCAAGG+TGG + chr1_2:61733476-61733495 None:intergenic 55.0%
ACCGCATCACGGAACAACCA+AGG + chr1_2:61733479-61733498 None:intergenic 55.0%
!! TGAGGGGTGGGCTGTTACTT+TGG + chr1_2:61733773-61733792 None:intergenic 55.0%
GAGCAGGTATGATTGAGGGG+TGG + chr1_2:61733786-61733805 None:intergenic 55.0%
TCATCATGCAGCCTGGTCCA+AGG - chr1_2:61734328-61734347 Msa0082790:intron 55.0%
CATCATGCAGCCTGGTCCAA+GGG - chr1_2:61734329-61734348 Msa0082790:intron 55.0%
ATCATGCAGCCTGGTCCAAG+GGG - chr1_2:61734330-61734349 Msa0082790:intron 55.0%
CACTGAATGAGAGAGCCCCT+TGG + chr1_2:61734348-61734367 None:intergenic 55.0%
ATCTCTGGCAGCACTCACCT+TGG + chr1_2:61734425-61734444 None:intergenic 55.0%
!! CTGTGACACATGGGTTGGAC+TGG - chr1_2:61734482-61734501 Msa0082790:intron 55.0%
GACACTTGCGTGCAGCAAGA+AGG + chr1_2:61734633-61734652 None:intergenic 55.0%
! TGAGACTTAGCCTGGTGGTG+CGG + chr1_2:61734903-61734922 None:intergenic 55.0%
GTGTCTCCAAGAGTTCCTGC+AGG - chr1_2:61734928-61734947 Msa0082790:intron 55.0%
TTCAACAGCTGAGGCAGGGA+TGG + chr1_2:61735244-61735263 None:intergenic 55.0%
CAGGTTCAACAGCTGAGGCA+GGG + chr1_2:61735248-61735267 None:intergenic 55.0%
ACCTCCAGGTTCAACAGCTG+AGG + chr1_2:61735253-61735272 None:intergenic 55.0%
AGCTGTTGAACCTGGAGGTG+TGG - chr1_2:61735254-61735273 Msa0082790:intron 55.0%
GAGAGACTTAGAAGCCGGGT+TGG + chr1_2:61735895-61735914 None:intergenic 55.0%
AGGGGAGAGACTTAGAAGCC+GGG + chr1_2:61735899-61735918 None:intergenic 55.0%
GTGCGGGGAAAGGAGAGAAG+AGG + chr1_2:61732418-61732437 None:intergenic 60.0%
! GTTGCAGAGAGTGCGGGGAA+AGG + chr1_2:61732428-61732447 None:intergenic 60.0%
ATGAGAGAGCCCCTTGGACC+AGG + chr1_2:61734342-61734361 None:intergenic 60.0%
TTGCAAAGTCCCGCACCACC+AGG - chr1_2:61734890-61734909 Msa0082790:intron 60.0%
! GAGACTTAGCCTGGTGGTGC+GGG + chr1_2:61734902-61734921 None:intergenic 60.0%
CCAGGTTCAACAGCTGAGGC+AGG + chr1_2:61735249-61735268 None:intergenic 60.0%
CCTGCCTCAGCTGTTGAACC+TGG - chr1_2:61735246-61735265 Msa0082790:intron 60.0%
GCCTCAGCTGTTGAACCTGG+AGG - chr1_2:61735249-61735268 Msa0082790:intron 60.0%
! TGGAGTTTCTGAGGAGGCCC+AGG - chr1_2:61735530-61735549 Msa0082790:intron 60.0%
!! CTTGGCAGGTTTTAGCCGGG+TGG - chr1_2:61735810-61735829 Msa0082790:CDS 60.0%
CTGTGAGGGCCAATTCCACC+CGG + chr1_2:61735828-61735847 None:intergenic 60.0%
! GCGCCGGTGTTTGCAGGAGT+TGG - chr1_2:61733001-61733020 Msa0082790:CDS 65.0%
! TCGCGTGCGCCGGTGTTTGC+AGG - chr1_2:61732995-61733014 Msa0082790:CDS 70.0%
TGCGTCGGGGCCACACCTCC+AGG + chr1_2:61735267-61735286 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 61732363 61736268 61732363 ID=Msa0082790;Name=Msa0082790
chr1_2 mRNA 61732363 61736268 61732363 ID=Msa0082790-mRNA-1;Parent=Msa0082790;Name=Msa0082790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=397|1|1|1|0.8|0.66|6|463|402
chr1_2 exon 61732363 61732813 61732363 ID=Msa0082790-mRNA-1:exon:20419;Parent=Msa0082790-mRNA-1
chr1_2 exon 61732936 61733422 61732936 ID=Msa0082790-mRNA-1:exon:20418;Parent=Msa0082790-mRNA-1
chr1_2 exon 61733630 61733806 61733630 ID=Msa0082790-mRNA-1:exon:20417;Parent=Msa0082790-mRNA-1
chr1_2 exon 61733894 61734023 61733894 ID=Msa0082790-mRNA-1:exon:20416;Parent=Msa0082790-mRNA-1
chr1_2 exon 61734205 61734292 61734205 ID=Msa0082790-mRNA-1:exon:20415;Parent=Msa0082790-mRNA-1
chr1_2 exon 61735533 61736268 61735533 ID=Msa0082790-mRNA-1:exon:20414;Parent=Msa0082790-mRNA-1
chr1_2 five_prime_UTR 61735872 61736268 61735872 ID=Msa0082790-mRNA-1:five_prime_utr;Parent=Msa0082790-mRNA-1
chr1_2 CDS 61735533 61735871 61735533 ID=Msa0082790-mRNA-1:cds;Parent=Msa0082790-mRNA-1
chr1_2 CDS 61734205 61734292 61734205 ID=Msa0082790-mRNA-1:cds;Parent=Msa0082790-mRNA-1
chr1_2 CDS 61733894 61734023 61733894 ID=Msa0082790-mRNA-1:cds;Parent=Msa0082790-mRNA-1
chr1_2 CDS 61733630 61733806 61733630 ID=Msa0082790-mRNA-1:cds;Parent=Msa0082790-mRNA-1
chr1_2 CDS 61732948 61733422 61732948 ID=Msa0082790-mRNA-1:cds;Parent=Msa0082790-mRNA-1
chr1_2 three_prime_UTR 61732936 61732947 61732936 ID=Msa0082790-mRNA-1:three_prime_utr;Parent=Msa0082790-mRNA-1
chr1_2 three_prime_UTR 61732363 61732813 61732363 ID=Msa0082790-mRNA-1:three_prime_utr;Parent=Msa0082790-mRNA-1
Gene Sequence

>Msa0082790

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTCGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTCATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTGTCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCTCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGA
Protein sequence

>Msa0082790

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSISFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE*