AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346580 MtrunA17_Chr1g0196071 99.005 402 4 0 1 402 1 402 0.0 833
Msa1346580 MtrunA17_Chr2g0286441 68.750 384 117 3 21 402 11 393 0.0 556
Msa1346580 MtrunA17_Chr2g0278511 53.009 432 168 10 1 402 1 427 6.55e-153 439
Msa1346580 MtrunA17_Chr5g0404321 52.482 423 173 7 1 402 1 416 9.34e-145 417
Msa1346580 MtrunA17_Chr1g0201891 50.572 437 175 10 1 402 1 431 6.94e-143 413
Msa1346580 MtrunA17_Chr8g0373001 51.667 420 177 6 1 402 1 412 6.73e-142 410
Msa1346580 MtrunA17_Chr1g0155301 55.153 359 149 6 50 402 70 422 5.91e-133 388
Msa1346580 MtrunA17_Chr2g0315641 50.279 358 145 5 50 402 42 371 3.69e-119 350
Msa1346580 MtrunA17_Chr2g0315651 44.875 361 161 8 50 402 37 367 6.33e-95 288
Msa1346580 MtrunA17_Chr8g0373361 41.487 417 200 17 1 395 11 405 1.20e-82 258
Msa1346580 MtrunA17_Chr8g0373331 34.158 404 197 10 1 393 1 346 3.61e-61 201
Msa1346580 MtrunA17_Chr8g0373341 33.333 399 180 13 1 392 1 320 9.42e-47 162
Msa1346580 MtrunA17_Chr1g0156151 53.521 142 62 1 65 202 66 207 4.83e-45 155
Msa1346580 MtrunA17_Chr8g0373351 35.275 309 121 9 99 394 44 286 1.07e-43 154
Msa1346580 MtrunA17_Chr3g0091401 38.776 98 54 1 92 189 8 99 5.67e-14 67.8
Msa1346580 MtrunA17_Chr2g0334041 50.000 62 24 1 340 401 305 359 1.71e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346580 AT2G47900.2 72.155 413 97 6 1 402 1 406 0.0 588
Msa1346580 AT2G47900.1 72.155 413 97 6 1 402 1 406 0.0 588
Msa1346580 AT2G47900.3 71.981 414 97 6 1 402 1 407 0.0 587
Msa1346580 AT3G06380.1 56.049 405 150 9 1 402 1 380 2.52e-147 423
Msa1346580 AT5G18680.1 58.470 366 124 8 50 402 39 389 6.69e-147 422
Msa1346580 AT1G43640.1 48.747 439 178 11 1 402 1 429 1.77e-140 407
Msa1346580 AT1G76900.2 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1346580 AT1G76900.1 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1346580 AT1G76900.3 47.380 458 182 9 1 402 1 455 5.74e-138 402
Msa1346580 AT1G25280.1 48.438 448 182 7 1 402 1 445 3.01e-136 397
Msa1346580 AT2G18280.2 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa1346580 AT2G18280.1 51.238 404 184 6 1 402 1 393 1.07e-134 391
Msa1346580 AT1G47270.3 53.117 369 149 5 42 402 36 388 7.15e-133 387
Msa1346580 AT1G47270.1 53.117 369 149 5 42 402 61 413 7.61e-133 387
Msa1346580 AT1G47270.2 53.117 369 149 5 42 402 60 412 1.03e-132 387
Msa1346580 AT1G43640.2 51.359 368 147 7 62 402 1 363 7.03e-130 378
Msa1346580 AT5G18680.2 58.497 306 100 7 109 402 7 297 9.76e-116 340
Msa1346580 AT3G06380.2 59.589 292 108 5 113 402 5 288 3.64e-113 333
Msa1346580 AT1G53320.1 49.036 363 152 6 48 402 42 379 6.15e-113 335
Msa1346580 AT1G25280.3 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa1346580 AT1G25280.2 50.741 270 94 5 169 402 1 267 6.15e-83 255
Msa1346580 AT1G61940.2 70.930 86 25 0 53 138 1 86 5.08e-40 144
Msa1346580 AT1G61940.1 72.131 61 17 0 53 113 1 61 1.43e-24 101
Msa1346580 AT1G61940.1 48.000 100 28 5 248 346 102 178 1.21e-12 67.8

Find 161 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATCATTTCTCTAAATT+TGG 0.095614 tig0009097:-13241 Msa1346580:CDS
GATGCACACCCTCCAATTTA+TGG 0.187148 tig0009097:-13054 Msa1346580:CDS
GCAAATCTGTCTCCATAAAT+TGG 0.193737 tig0009097:+13042 None:intergenic
TCGCTTATATACAAAATAAA+AGG 0.198604 tig0009097:+11981 None:intergenic
TGGTAACAGATCAAACTTTC+TGG 0.205085 tig0009097:-13097 Msa1346580:intron
AATTGGGTGGAGTTGGAATT+AGG 0.226753 tig0009097:-15187 Msa1346580:five_prime_UTR
CAGCTATGGTTTAGAAGAAT+TGG 0.255976 tig0009097:-15235 Msa1346580:five_prime_UTR
ACTTTGTACCAATTGAATAT+TGG 0.258825 tig0009097:+11742 None:intergenic
CTCATATGATCTGAATGTTT+TGG 0.268134 tig0009097:-12941 Msa1346580:CDS
TTAGGTTAACGATGTCATTT+AGG 0.284142 tig0009097:-15169 Msa1346580:exon
TCGCGTGCGCCGGTGTTTGC+AGG 0.297366 tig0009097:-14923 Msa1346580:CDS
ATGTATGTACTTGCCTGCTT+AGG 0.333120 tig0009097:-11791 Msa1346580:three_prime_UTR
AAGGGATTTGACGTGAAATT+CGG 0.342997 tig0009097:-15128 Msa1346580:CDS
GAAAATGTCATTCTGCAGTT+TGG 0.348950 tig0009097:-12360 Msa1346580:CDS
ATTTAGTAGAATTGAGGAAT+TGG 0.350714 tig0009097:-15204 Msa1346580:five_prime_UTR
TCACAAACCAATTGCATCTA+AGG 0.355657 tig0009097:+11855 None:intergenic
TGCATCATACACTGTAAATT+TGG 0.359668 tig0009097:+13071 None:intergenic
ATTGAGGAATTGGGTGGAGT+TGG 0.377499 tig0009097:-15194 Msa1346580:five_prime_UTR
TTTAGTAGAATTGAGGAATT+GGG 0.386629 tig0009097:-15203 Msa1346580:five_prime_UTR
CAATCACTCACAAGCAATCT+TGG 0.389643 tig0009097:+12248 None:intergenic
ATTGGCCCTCACAGTATTGC+AGG 0.390301 tig0009097:-12078 Msa1346580:three_prime_UTR
TGTGTCTGTTTGATAGCTTT+TGG 0.398409 tig0009097:-11822 Msa1346580:three_prime_UTR
TAGGATTATGCAATGTGTTA+TGG 0.402541 tig0009097:-12697 Msa1346580:CDS
AAGATTATCCAATATTCAAT+TGG 0.403254 tig0009097:-11750 Msa1346580:three_prime_UTR
CAGTATTGCAGGTCTGATAT+AGG 0.405155 tig0009097:-12067 Msa1346580:three_prime_UTR
CCTGCCTCAGCTGTTGAACC+TGG 0.411820 tig0009097:-12666 Msa1346580:CDS
GACAGGGAATGTCAACTTGC+TGG 0.412110 tig0009097:+14854 None:intergenic
AGGGATTTGACGTGAAATTC+GGG 0.417694 tig0009097:-15127 Msa1346580:CDS
ATGGGTTGAGTCAGAGTTGT+TGG 0.417839 tig0009097:-15031 Msa1346580:CDS
GATCTGAAGAACGGGATAGA+TGG 0.420581 tig0009097:+12591 None:intergenic
GACAAGTGCTACCTGCTTCA+AGG 0.422783 tig0009097:+14830 None:intergenic
TAGTTTCCTGCAGGAACTCT+TGG 0.422898 tig0009097:+12979 None:intergenic
AAAACACAAAATACAACATA+TGG 0.429929 tig0009097:+11928 None:intergenic
GATTGCTTGTGAGTGATTGC+TGG 0.433585 tig0009097:-12244 Msa1346580:exon
TGCGTCGGGGCCACACCTCC+AGG 0.436166 tig0009097:+12648 None:intergenic
TTATCAAAGGTGCTGCTGAT+TGG 0.436264 tig0009097:+12544 None:intergenic
GCGCCGGTGTTTGCAGGAGT+TGG 0.436346 tig0009097:-14917 Msa1346580:CDS
ACGGTAAAGGGTAGAGAAGA+AGG 0.436424 tig0009097:+15542 None:intergenic
ACAACGACCTTAGATGCAAT+TGG 0.442451 tig0009097:-11862 Msa1346580:three_prime_UTR
TGTTATTGCCAATGGTGCTT+TGG 0.443517 tig0009097:-15063 Msa1346580:CDS
GAAGAAATTGAGTCTGCGTC+GGG 0.444561 tig0009097:+12634 None:intergenic
GGTAACAGATCAAACTTTCT+GGG 0.446463 tig0009097:-13096 Msa1346580:intron
TTGAGGTTTCAGATGATACT+TGG 0.450054 tig0009097:-14965 Msa1346580:CDS
AGCTATCAAACAGACACAAC+TGG 0.452900 tig0009097:+11827 None:intergenic
ATAACACATTGCATAATCCT+AGG 0.454350 tig0009097:+12699 None:intergenic
GGTGCTTTGGTGATTGATGA+TGG 0.458578 tig0009097:-15050 Msa1346580:CDS
AATGCTTCAAAGGCAGAGAT+TGG 0.458777 tig0009097:+12297 None:intergenic
CTGTTGTTCAATCACTCTGA+TGG 0.465449 tig0009097:-15453 Msa1346580:five_prime_UTR
TGCTGGTGTTTGAACTTCAA+TGG 0.466360 tig0009097:-12459 Msa1346580:CDS
GCTACCTGCTTCAAGGAGAC+AGG 0.468323 tig0009097:+14837 None:intergenic
TGAGTTGTTGCAGAGAGTGC+GGG 0.471120 tig0009097:+15487 None:intergenic
GAGACTTAGCCTGGTGGTGC+GGG 0.471988 tig0009097:+13014 None:intergenic
CCAGGTTCAACAGCTGAGGC+AGG 0.472095 tig0009097:+12666 None:intergenic
AATATTGGATAATCTTTGAA+AGG 0.473129 tig0009097:+11757 None:intergenic
ATACAAAATAAAAGGGAGAA+GGG 0.473379 tig0009097:+11989 None:intergenic
AGCTATGGTTTAGAAGAATT+GGG 0.473724 tig0009097:-15234 Msa1346580:five_prime_UTR
TGTATGTACTTGCCTGCTTA+GGG 0.475392 tig0009097:-11790 Msa1346580:three_prime_UTR
CATCATGCAGCCTGGTCCAA+GGG 0.476151 tig0009097:-13584 Msa1346580:intron
CGAATAACACAACAAAGACT+TGG 0.477158 tig0009097:+11713 None:intergenic
TACAAAATAAAAGGGAGAAG+GGG 0.477609 tig0009097:+11990 None:intergenic
GAAGGAGTAGCACCTATGTT+GGG 0.479960 tig0009097:-13206 Msa1346580:CDS
GAGTATGATCATGGATAGGA+AGG 0.482584 tig0009097:-15147 Msa1346580:CDS
TTGTGAGTGATTGCTGGAAC+AGG 0.483302 tig0009097:-12238 Msa1346580:intron
TGAAGTTCAAACACCAGCAT+TGG 0.484021 tig0009097:+12463 None:intergenic
CAAAGGCAGAGATTGGATAC+TGG 0.485873 tig0009097:+12304 None:intergenic
AAGTTAATTTAGTAGAATTG+AGG 0.486220 tig0009097:-15210 Msa1346580:five_prime_UTR
ATCAATCACCAAAGCACCAT+TGG 0.486769 tig0009097:+15055 None:intergenic
GTCATTTAGGAGTATGATCA+TGG 0.487718 tig0009097:-15156 Msa1346580:CDS
CACTTGCTTGAGACTTAGCC+TGG 0.491047 tig0009097:+13005 None:intergenic
TGGAGTTTCTGAGGAGGCCC+AGG 0.493680 tig0009097:-12382 Msa1346580:CDS
CGCTTATATACAAAATAAAA+GGG 0.493916 tig0009097:+11982 None:intergenic
AAGAATGTTGTCGCGTGCGC+CGG 0.493919 tig0009097:-14933 Msa1346580:CDS
AGCTGTTGAACCTGGAGGTG+TGG 0.496026 tig0009097:-12658 Msa1346580:CDS
ATGAGAGAGCCCCTTGGACC+AGG 0.496405 tig0009097:+13574 None:intergenic
TGATTGAACAACAGAAATTG+AGG 0.506055 tig0009097:+15462 None:intergenic
TAAAGGGTAGAGAAGAAGGT+TGG 0.512987 tig0009097:+15546 None:intergenic
TCAATCACTCTGATGGAAGA+AGG 0.514260 tig0009097:-15446 Msa1346580:five_prime_UTR
GTGCTTTGGTGATTGATGAT+GGG 0.516000 tig0009097:-15049 Msa1346580:CDS
TCATCATGCAGCCTGGTCCA+AGG 0.523744 tig0009097:-13585 Msa1346580:intron
CTTTGATAAGTCAAAATGAT+GGG 0.523813 tig0009097:-12530 Msa1346580:CDS
GGAATGTAGCAACCCTAAGC+AGG 0.528589 tig0009097:+11778 None:intergenic
GTTGCAGAGAGTGCGGGGAA+AGG 0.530528 tig0009097:+15493 None:intergenic
AGAAGGAGTAGCACCTATGT+TGG 0.530821 tig0009097:-13207 Msa1346580:CDS
GCACATCCCTCAAAAGCTCA+TGG 0.537457 tig0009097:+14997 None:intergenic
TTGCAAAGTCCCGCACCACC+AGG 0.537675 tig0009097:-13023 Msa1346580:CDS
TATACAAAATAAAAGGGAGA+AGG 0.538868 tig0009097:+11988 None:intergenic
TTCAACAGCTGAGGCAGGGA+TGG 0.540786 tig0009097:+12671 None:intergenic
ACAAAATAAAAGGGAGAAGG+GGG 0.542378 tig0009097:+11991 None:intergenic
GCTTTCTGTTTAGTCCAACC+CGG 0.543246 tig0009097:-12034 Msa1346580:three_prime_UTR
AGTAAAGTGAGAAACGGTAA+AGG 0.543490 tig0009097:+15529 None:intergenic
ATTCCCTGTCTCCTTGAAGC+AGG 0.548762 tig0009097:-14841 Msa1346580:intron
CAGATGATACTTGGCCGACT+CGG 0.549792 tig0009097:-14956 Msa1346580:CDS
CACATCCCTCAAAAGCTCAT+GGG 0.551644 tig0009097:+14998 None:intergenic
GCATATTGCAAATGCTTCAA+AGG 0.553851 tig0009097:+12287 None:intergenic
CCTTTGATAAGTCAAAATGA+TGG 0.555873 tig0009097:-12531 Msa1346580:CDS
AAAATGTTAACAGGGGCCCT+AGG 0.556228 tig0009097:-12716 Msa1346580:intron
TGGGTTGAGTCAGAGTTGTT+GGG 0.556484 tig0009097:-15030 Msa1346580:CDS
AAGGGGAGAGACTTAGAAGC+CGG 0.556618 tig0009097:+12015 None:intergenic
GGATGTGCTTATGAGAATTG+AGG 0.557422 tig0009097:-14982 Msa1346580:CDS
ATACCTCAACTTCCCAACAT+AGG 0.558903 tig0009097:+13194 None:intergenic
GTCAACTTGCTGGACAATTG+AGG 0.559973 tig0009097:+14864 None:intergenic
CACTGAATGAGAGAGCCCCT+TGG 0.561004 tig0009097:+13568 None:intergenic
TCTTGGTGTCAAAGCTGCTA+AGG 0.561466 tig0009097:+12265 None:intergenic
GAGAAATGATATAGTCAGTG+TGG 0.564360 tig0009097:+13250 None:intergenic
GTAAAGTGAGAAACGGTAAA+GGG 0.565184 tig0009097:+15530 None:intergenic
AATCTGTCTCCATAAATTGG+AGG 0.567458 tig0009097:+13045 None:intergenic
TTTGACGTGAAATTCGGGTA+TGG 0.568681 tig0009097:-15122 Msa1346580:CDS
TGATTGGAGATTCTCTGAGC+GGG 0.569183 tig0009097:+12560 None:intergenic
GCACCTATGTTGGGAAGTTG+AGG 0.569372 tig0009097:-13197 Msa1346580:intron
CAATCACTCTGATGGAAGAA+GGG 0.569385 tig0009097:-15445 Msa1346580:five_prime_UTR
AGGCAGAGTAAAGTGAGAAA+CGG 0.569573 tig0009097:+15523 None:intergenic
TGCATTATATTTAACAGACA+TGG 0.571593 tig0009097:-11952 Msa1346580:three_prime_UTR
TGAAGAAATTGAGTCTGCGT+CGG 0.573052 tig0009097:+12633 None:intergenic
GGTCGTTGTCTACAATCTCA+TGG 0.574634 tig0009097:+11876 None:intergenic
ATTCTGCAGTTTGGAAAAGT+CGG 0.574704 tig0009097:-12351 Msa1346580:CDS
GTGCGGGGAAAGGAGAGAAG+AGG 0.577607 tig0009097:+15503 None:intergenic
TCATATGAGACATGCACGAT+GGG 0.577709 tig0009097:+12955 None:intergenic
GAGAGACTTAGAAGCCGGGT+TGG 0.578090 tig0009097:+12020 None:intergenic
TTGAGTTGTTGCAGAGAGTG+CGG 0.578891 tig0009097:+15486 None:intergenic
AAGTCAAAATGATGGGGAGC+TGG 0.581065 tig0009097:-12523 Msa1346580:CDS
TGGAGTTGTTCATGCCACCT+AGG 0.583552 tig0009097:+12483 None:intergenic
TTTGCAGCCTCAACTGATGA+CGG 0.583581 tig0009097:-13312 Msa1346580:intron
GGCATGAACAACTCCAATGC+TGG 0.585250 tig0009097:-12476 Msa1346580:CDS
TGAGACTTAGCCTGGTGGTG+CGG 0.585690 tig0009097:+13013 None:intergenic
ACGATGGGATAGTTTCCTGC+AGG 0.585969 tig0009097:+12970 None:intergenic
CTGTGAGGGCCAATTCCACC+CGG 0.588002 tig0009097:+12087 None:intergenic
GATGTTAATGTTATTGCCAA+TGG 0.594465 tig0009097:-15071 Msa1346580:CDS
ATCTGTCTCCATAAATTGGA+GGG 0.597162 tig0009097:+13046 None:intergenic
ATTTGGATGATGTGTCAAGA+AGG 0.597180 tig0009097:-13224 Msa1346580:CDS
CTACCTGCTTCAAGGAGACA+GGG 0.598753 tig0009097:+14838 None:intergenic
AGGGGAGAGACTTAGAAGCC+GGG 0.599238 tig0009097:+12016 None:intergenic
GTGTCTCCAAGAGTTCCTGC+AGG 0.601279 tig0009097:-12985 Msa1346580:CDS
GACACTTGCGTGCAGCAAGA+AGG 0.601304 tig0009097:+13283 None:intergenic
CAGGTTCAACAGCTGAGGCA+GGG 0.604724 tig0009097:+12667 None:intergenic
GAATAACACAACAAAGACTT+GGG 0.605838 tig0009097:+11714 None:intergenic
AGTAGAATTGAGGAATTGGG+TGG 0.605987 tig0009097:-15200 Msa1346580:five_prime_UTR
GAACTTGCCGTCATCAGTTG+AGG 0.606120 tig0009097:+13305 None:intergenic
GATTGGATACTGGTAATCCA+TGG 0.610280 tig0009097:+12314 None:intergenic
AGAAATGATATAGTCAGTGT+GGG 0.610923 tig0009097:+13251 None:intergenic
GCCTCAGCTGTTGAACCTGG+AGG 0.611858 tig0009097:-12663 Msa1346580:CDS
TTAGGAGTATGATCATGGAT+AGG 0.615050 tig0009097:-15151 Msa1346580:CDS
AACTTGCTGGACAATTGAGG+AGG 0.616449 tig0009097:+14867 None:intergenic
TCAGACCTGCAATACTGTGA+GGG 0.617106 tig0009097:+12073 None:intergenic
TAACACATTGCATAATCCTA+GGG 0.617287 tig0009097:+12700 None:intergenic
ATCATGCAGCCTGGTCCAAG+GGG 0.619178 tig0009097:-13583 Msa1346580:intron
ACCTCCAGGTTCAACAGCTG+AGG 0.623409 tig0009097:+12662 None:intergenic
CTGATTGGAGATTCTCTGAG+CGG 0.624740 tig0009097:+12559 None:intergenic
ATCATATGAGACATGCACGA+TGG 0.626290 tig0009097:+12954 None:intergenic
ACATCCCTCAAAAGCTCATG+GGG 0.631071 tig0009097:+14999 None:intergenic
AGTATGATCATGGATAGGAA+GGG 0.631347 tig0009097:-15146 Msa1346580:CDS
GCAGTTTGGAAAAGTCGGAA+AGG 0.632984 tig0009097:-12346 Msa1346580:CDS
GAGTTGTTGCAGAGAGTGCG+GGG 0.638794 tig0009097:+15488 None:intergenic
CGGAAAGGATGTGTTCACCA+TGG 0.642135 tig0009097:-12331 Msa1346580:CDS
TGCTATATTAAACGAAATCG+CGG 0.643232 tig0009097:-13547 Msa1346580:CDS
GCGACAACATTCTTCCGAGT+CGG 0.645949 tig0009097:+14942 None:intergenic
TTTGATAAGTCAAAATGATG+GGG 0.648482 tig0009097:-12529 Msa1346580:CDS
GAGTTGGAGAGAAATTGTGA+AGG 0.664353 tig0009097:-14901 Msa1346580:CDS
TCTCCAACTCCTGCAAACAC+CGG 0.665494 tig0009097:+14914 None:intergenic
ATCAGACCTGCAATACTGTG+AGG 0.677842 tig0009097:+12072 None:intergenic
AAGAAATTGAGTCTGCGTCG+GGG 0.697436 tig0009097:+12635 None:intergenic
TTGCTTGAGACTTAGCCTGG+TGG 0.709949 tig0009097:+13008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGAATTTTGAAAATTAAAA+TGG + tig0009097:11863-11882 None:intergenic 15.0%
!! AAAAAAATAAAAGATACATC+GGG + tig0009097:12422-12441 None:intergenic 15.0%
!! GAAAAAAATAAAAGATACAT+CGG + tig0009097:12423-12442 None:intergenic 15.0%
!! TGAGAAAAAGATAATAAATT+TGG + tig0009097:13703-13722 None:intergenic 15.0%
!! TAAATAAGAATTCAATATCA+GGG + tig0009097:14463-14482 None:intergenic 15.0%
!! AAGTTAATTTAGTAGAATTG+AGG - tig0009097:12011-12030 Msa1346580:three_prime_UTR 20.0%
!! AATTGTTCGTTTACAAAAAT+AGG + tig0009097:12954-12973 None:intergenic 20.0%
!! AAATCAAATCAACATTACAA+AGG + tig0009097:13891-13910 None:intergenic 20.0%
!! CTATATCATTTCTCTAAATT+TGG - tig0009097:13980-13999 Msa1346580:intron 20.0%
!! CTAAATAAGAATTCAATATC+AGG + tig0009097:14464-14483 None:intergenic 20.0%
!! TTAGTTAACAAAATGTTAAC+AGG - tig0009097:14496-14515 Msa1346580:intron 20.0%
!! TAGTTAACAAAATGTTAACA+GGG - tig0009097:14497-14516 Msa1346580:intron 20.0%
!! CGCTTATATACAAAATAAAA+GGG + tig0009097:15242-15261 None:intergenic 20.0%
!! TCGCTTATATACAAAATAAA+AGG + tig0009097:15243-15262 None:intergenic 20.0%
!! AAAACACAAAATACAACATA+TGG + tig0009097:15296-15315 None:intergenic 20.0%
!! AATATTGGATAATCTTTGAA+AGG + tig0009097:15467-15486 None:intergenic 20.0%
!! AAGATTATCCAATATTCAAT+TGG - tig0009097:15471-15490 Msa1346580:five_prime_UTR 20.0%
! ACAAAAACTAATTTCCATCA+GGG + tig0009097:11885-11904 None:intergenic 25.0%
! TACAAAAACTAATTTCCATC+AGG + tig0009097:11886-11905 None:intergenic 25.0%
!! TGATTTTTATTCATCAGCTA+TGG - tig0009097:11972-11991 Msa1346580:three_prime_UTR 25.0%
! ATTTAGTAGAATTGAGGAAT+TGG - tig0009097:12017-12036 Msa1346580:three_prime_UTR 25.0%
! TTTAGTAGAATTGAGGAATT+GGG - tig0009097:12018-12037 Msa1346580:three_prime_UTR 25.0%
! ATACTTTACTAACTTGAGAA+AGG - tig0009097:12598-12617 Msa1346580:CDS 25.0%
!!! TTTTTTCTACTAAGATGCAA+TGG - tig0009097:13420-13439 Msa1346580:intron 25.0%
!! TTTCTCAACTTTTGTTCAAT+TGG - tig0009097:13487-13506 Msa1346580:intron 25.0%
!! TTCTCAACTTTTGTTCAATT+GGG - tig0009097:13488-13507 Msa1346580:intron 25.0%
!!! GTTTTATTCTTATCACACAA+AGG - tig0009097:13557-13576 Msa1346580:CDS 25.0%
! ACATCTTAAATCTAAATCTC+TGG + tig0009097:13748-13767 None:intergenic 25.0%
!! AGATTTAGATTTAAGATGTG+TGG - tig0009097:13749-13768 Msa1346580:intron 25.0%
! TCTTAATATCATACAAGTTG+AGG + tig0009097:13839-13858 None:intergenic 25.0%
! ATTATTACCTATTACCTTCT+GGG - tig0009097:14078-14097 Msa1346580:intron 25.0%
!! TCATATGATCTGAATGTTTT+GGG - tig0009097:14281-14300 Msa1346580:intron 25.0%
! CTAAGAAACAATCGATAAAA+GGG + tig0009097:14406-14425 None:intergenic 25.0%
! ACTAAGAAACAATCGATAAA+AGG + tig0009097:14407-14426 None:intergenic 25.0%
! AGTTAACAAAATGTTAACAG+GGG - tig0009097:14498-14517 Msa1346580:intron 25.0%
! CTTTGATAAGTCAAAATGAT+GGG - tig0009097:14691-14710 Msa1346580:intron 25.0%
! TTTGATAAGTCAAAATGATG+GGG - tig0009097:14692-14711 Msa1346580:intron 25.0%
! ATACAAAATAAAAGGGAGAA+GGG + tig0009097:15235-15254 None:intergenic 25.0%
! TATACAAAATAAAAGGGAGA+AGG + tig0009097:15236-15255 None:intergenic 25.0%
! TGCATTATATTTAACAGACA+TGG - tig0009097:15269-15288 Msa1346580:five_prime_UTR 25.0%
!!! CAAACCAACTTATGTTTTTT+TGG - tig0009097:15322-15341 Msa1346580:five_prime_UTR 25.0%
! ACTTTGTACCAATTGAATAT+TGG + tig0009097:15482-15501 None:intergenic 25.0%
TGATTGAACAACAGAAATTG+AGG + tig0009097:11762-11781 None:intergenic 30.0%
! GCAATTTTCGTCAAATTTCT+CGG - tig0009097:11811-11830 Msa1346580:three_prime_UTR 30.0%
! ATTTTCAAAATTCACCCTGA+TGG - tig0009097:11868-11887 Msa1346580:three_prime_UTR 30.0%
! AGTTTTTGTACATGCAATTG+TGG - tig0009097:11896-11915 Msa1346580:three_prime_UTR 30.0%
AGCTATGGTTTAGAAGAATT+GGG - tig0009097:11987-12006 Msa1346580:three_prime_UTR 30.0%
! TTAGGTTAACGATGTCATTT+AGG - tig0009097:12052-12071 Msa1346580:three_prime_UTR 30.0%
GATGTTAATGTTATTGCCAA+TGG - tig0009097:12150-12169 Msa1346580:intron 30.0%
! AAACCAAATATTTGTTGAGC+AGG - tig0009097:12699-12718 Msa1346580:CDS 30.0%
ATTCCTGCTCAACAAATATT+TGG + tig0009097:12705-12724 None:intergenic 30.0%
! AAATATTTGTTGAGCAGGAA+TGG - tig0009097:12704-12723 Msa1346580:CDS 30.0%
TAACTCACTCTATTTGAATG+AGG + tig0009097:12826-12845 None:intergenic 30.0%
! CATTTTTGTAAATGAAAGCC+AGG - tig0009097:12879-12898 Msa1346580:intron 30.0%
! TACATCCTTTTGAACTGAAA+TGG + tig0009097:13299-13318 None:intergenic 30.0%
TGCTATATTAAACGAAATCG+CGG - tig0009097:13674-13693 Msa1346580:intron 30.0%
TTCTATATTCTGTGACACAT+GGG - tig0009097:13781-13800 Msa1346580:intron 30.0%
AGAAATGATATAGTCAGTGT+GGG + tig0009097:13973-13992 None:intergenic 30.0%
TAATCAACAAGTCATGTCAT+AGG + tig0009097:14062-14081 None:intergenic 30.0%
GATTATTACCTATTACCTTC+TGG - tig0009097:14077-14096 Msa1346580:intron 30.0%
!!! GAAATCACTTTTTGGTTCAT+TGG - tig0009097:14104-14123 Msa1346580:intron 30.0%
TGCATCATACACTGTAAATT+TGG + tig0009097:14153-14172 None:intergenic 30.0%
! CTCATATGATCTGAATGTTT+TGG - tig0009097:14280-14299 Msa1346580:intron 30.0%
TTTAGGTAAAGAGAATATCG+CGG - tig0009097:14340-14359 Msa1346580:intron 30.0%
TAACACATTGCATAATCCTA+GGG + tig0009097:14524-14543 None:intergenic 30.0%
ATAACACATTGCATAATCCT+AGG + tig0009097:14525-14544 None:intergenic 30.0%
TAGGATTATGCAATGTGTTA+TGG - tig0009097:14524-14543 Msa1346580:intron 30.0%
!! TTGATTTTGATCTGAAGAAC+GGG + tig0009097:14641-14660 None:intergenic 30.0%
!! GTTGATTTTGATCTGAAGAA+CGG + tig0009097:14642-14661 None:intergenic 30.0%
!!! CCATCATTTTGACTTATCAA+AGG + tig0009097:14693-14712 None:intergenic 30.0%
CCTTTGATAAGTCAAAATGA+TGG - tig0009097:14690-14709 Msa1346580:intron 30.0%
TTCAGTTAAAAATTTCCAGC+TGG - tig0009097:14800-14819 Msa1346580:intron 30.0%
!!! ACATAGTTGCTGATTTTACT+TGG - tig0009097:15101-15120 Msa1346580:CDS 30.0%
TACAAAATAAAAGGGAGAAG+GGG + tig0009097:15234-15253 None:intergenic 30.0%
ATGGCCAAAAAAACATAAGT+TGG + tig0009097:15329-15348 None:intergenic 30.0%
GAATAACACAACAAAGACTT+GGG + tig0009097:15510-15529 None:intergenic 30.0%
GTAAAGTGAGAAACGGTAAA+GGG + tig0009097:11694-11713 None:intergenic 35.0%
AGTAAAGTGAGAAACGGTAA+AGG + tig0009097:11695-11714 None:intergenic 35.0%
CAGCTATGGTTTAGAAGAAT+TGG - tig0009097:11986-12005 Msa1346580:three_prime_UTR 35.0%
! GTCATTTAGGAGTATGATCA+TGG - tig0009097:12065-12084 Msa1346580:three_prime_UTR 35.0%
! TTAGGAGTATGATCATGGAT+AGG - tig0009097:12070-12089 Msa1346580:three_prime_UTR 35.0%
AGTATGATCATGGATAGGAA+GGG - tig0009097:12075-12094 Msa1346580:three_prime_UTR 35.0%
AAGGGATTTGACGTGAAATT+CGG - tig0009097:12093-12112 Msa1346580:three_prime_UTR 35.0%
TTGAGGTTTCAGATGATACT+TGG - tig0009097:12256-12275 Msa1346580:CDS 35.0%
!! ACATCCTTTTTGAGCTGAAT+TGG - tig0009097:12516-12535 Msa1346580:CDS 35.0%
!! CATCCTTTTTGAGCTGAATT+GGG - tig0009097:12517-12536 Msa1346580:CDS 35.0%
AAACCCAATTCAGCTCAAAA+AGG + tig0009097:12523-12542 None:intergenic 35.0%
ACTCTATTTGAATGAGGTGT+GGG + tig0009097:12820-12839 None:intergenic 35.0%
GAGAGAACAAGAATGATTGT+TGG + tig0009097:13000-13019 None:intergenic 35.0%
TAACTCATTCTCTTTGAGTG+AGG - tig0009097:13022-13041 Msa1346580:CDS 35.0%
TCATACCTGCTCAACAAATA+TGG - tig0009097:13102-13121 Msa1346580:intron 35.0%
CATACCTGCTCAACAAATAT+GGG - tig0009097:13103-13122 Msa1346580:intron 35.0%
! AAAACCCATATTTGTTGAGC+AGG + tig0009097:13110-13129 None:intergenic 35.0%
! CCTTTTGAACTGAAATGGTT+AGG + tig0009097:13294-13313 None:intergenic 35.0%
CCTAACCATTTCAGTTCAAA+AGG - tig0009097:13291-13310 Msa1346580:CDS 35.0%
!! TTATTTCGAGTTACAGGCAA+TGG + tig0009097:13381-13400 None:intergenic 35.0%
!! CAATGCTTATTTCGAGTTAC+AGG + tig0009097:13387-13406 None:intergenic 35.0%
TGCTTAAACTCATGCTACAT+TGG + tig0009097:13524-13543 None:intergenic 35.0%
! CTTTTTCTCAGTTTGAACCA+AGG - tig0009097:13713-13732 Msa1346580:intron 35.0%
GTTCTATATTCTGTGACACA+TGG - tig0009097:13780-13799 Msa1346580:intron 35.0%
! TCATACAAGTTGAGGTTACA+AGG + tig0009097:13831-13850 None:intergenic 35.0%
GAGAAATGATATAGTCAGTG+TGG + tig0009097:13974-13993 None:intergenic 35.0%
ATTTGGATGATGTGTCAAGA+AGG - tig0009097:13997-14016 Msa1346580:intron 35.0%
TGGTAACAGATCAAACTTTC+TGG - tig0009097:14124-14143 Msa1346580:intron 35.0%
GGTAACAGATCAAACTTTCT+GGG - tig0009097:14125-14144 Msa1346580:intron 35.0%
ATCTGTCTCCATAAATTGGA+GGG + tig0009097:14178-14197 None:intergenic 35.0%
AATCTGTCTCCATAAATTGG+AGG + tig0009097:14179-14198 None:intergenic 35.0%
GCAAATCTGTCTCCATAAAT+TGG + tig0009097:14182-14201 None:intergenic 35.0%
AAATAGAGCCAACTCTTGAA+AGG + tig0009097:14440-14459 None:intergenic 35.0%
TGTTAAAAAACAAGGCTCCT+AGG - tig0009097:14721-14740 Msa1346580:intron 35.0%
TCCTAAAAATGGAGTTTCTG+AGG - tig0009097:14830-14849 Msa1346580:intron 35.0%
!! TCCTCAGAAACTCCATTTTT+AGG + tig0009097:14834-14853 None:intergenic 35.0%
! TAAAAATGGAGTTTCTGAGG+AGG - tig0009097:14833-14852 Msa1346580:intron 35.0%
GAAAATGTCATTCTGCAGTT+TGG - tig0009097:14861-14880 Msa1346580:CDS 35.0%
ATTCTGCAGTTTGGAAAAGT+CGG - tig0009097:14870-14889 Msa1346580:CDS 35.0%
GCATATTGCAAATGCTTCAA+AGG + tig0009097:14937-14956 None:intergenic 35.0%
GTGATCGTTGAGATTAATGA+AGG - tig0009097:15075-15094 Msa1346580:CDS 35.0%
ACAAAATAAAAGGGAGAAGG+GGG + tig0009097:15233-15252 None:intergenic 35.0%
TCACAAACCAATTGCATCTA+AGG + tig0009097:15369-15388 None:intergenic 35.0%
!! TGTGTCTGTTTGATAGCTTT+TGG - tig0009097:15399-15418 Msa1346580:five_prime_UTR 35.0%
CGAATAACACAACAAAGACT+TGG + tig0009097:15511-15530 None:intergenic 35.0%
TAAAGGGTAGAGAAGAAGGT+TGG + tig0009097:11678-11697 None:intergenic 40.0%
AGGCAGAGTAAAGTGAGAAA+CGG + tig0009097:11701-11720 None:intergenic 40.0%
CTGTTGTTCAATCACTCTGA+TGG - tig0009097:11768-11787 Msa1346580:three_prime_UTR 40.0%
TCAATCACTCTGATGGAAGA+AGG - tig0009097:11775-11794 Msa1346580:three_prime_UTR 40.0%
CAATCACTCTGATGGAAGAA+GGG - tig0009097:11776-11795 Msa1346580:three_prime_UTR 40.0%
AGTAGAATTGAGGAATTGGG+TGG - tig0009097:12021-12040 Msa1346580:three_prime_UTR 40.0%
AATTGGGTGGAGTTGGAATT+AGG - tig0009097:12034-12053 Msa1346580:three_prime_UTR 40.0%
GAGTATGATCATGGATAGGA+AGG - tig0009097:12074-12093 Msa1346580:three_prime_UTR 40.0%
AGGGATTTGACGTGAAATTC+GGG - tig0009097:12094-12113 Msa1346580:three_prime_UTR 40.0%
TTTGACGTGAAATTCGGGTA+TGG - tig0009097:12099-12118 Msa1346580:intron 40.0%
TGTTATTGCCAATGGTGCTT+TGG - tig0009097:12158-12177 Msa1346580:intron 40.0%
! ATCAATCACCAAAGCACCAT+TGG + tig0009097:12169-12188 None:intergenic 40.0%
! GTGCTTTGGTGATTGATGAT+GGG - tig0009097:12172-12191 Msa1346580:intron 40.0%
GGATGTGCTTATGAGAATTG+AGG - tig0009097:12239-12258 Msa1346580:exon 40.0%
GAGTTGGAGAGAAATTGTGA+AGG - tig0009097:12320-12339 Msa1346580:CDS 40.0%
! AGCTCAGAGTAGTTTGTGAT+TGG - tig0009097:12489-12508 Msa1346580:CDS 40.0%
GTTTGATGTCATTCTCACGT+TGG - tig0009097:12658-12677 Msa1346580:CDS 40.0%
TTGTTATCTTGGTTGTTGCG+TGG - tig0009097:12739-12758 Msa1346580:intron 40.0%
GTTAAGAATTCACCGCATCA+CGG + tig0009097:12798-12817 None:intergenic 40.0%
CACTCTATTTGAATGAGGTG+TGG + tig0009097:12821-12840 None:intergenic 40.0%
GAGAGAGCAAGAATGATTGT+TGG - tig0009097:12848-12867 Msa1346580:intron 40.0%
!! GCAAGAATGATTGTTGGCTT+TGG - tig0009097:12854-12873 Msa1346580:intron 40.0%
GAAAGAGCAAGAATGTTTCC+TGG + tig0009097:12900-12919 None:intergenic 40.0%
TCACTAACTCTTGTTGAGTG+AGG - tig0009097:12918-12937 Msa1346580:intron 40.0%
TAACTCTTGTTGAGTGAGGT+TGG - tig0009097:12922-12941 Msa1346580:intron 40.0%
!! CTGTTACTTTGGTTGTTGTG+TGG + tig0009097:13070-13089 None:intergenic 40.0%
TGTTGAGCAGGTATGATTGA+GGG + tig0009097:13098-13117 None:intergenic 40.0%
TTGTTGAGCAGGTATGATTG+AGG + tig0009097:13099-13118 None:intergenic 40.0%
ATTCGATGCAACTCTTGCAT+TGG + tig0009097:13149-13168 None:intergenic 40.0%
! ACTAGCTTCCTTGTGAATAG+TGG - tig0009097:13330-13349 Msa1346580:intron 40.0%
TTCCTTGTGAATAGTGGCAT+TGG - tig0009097:13336-13355 Msa1346580:intron 40.0%
!! TGAATAGTGGCATTGGTGTA+AGG - tig0009097:13343-13362 Msa1346580:intron 40.0%
!! GTTATTTTCATCATGCAGCC+TGG - tig0009097:13629-13648 Msa1346580:intron 40.0%
ATATTCTGTGACACATGGGT+TGG - tig0009097:13785-13804 Msa1346580:intron 40.0%
ATACCTCAACTTCCCAACAT+AGG + tig0009097:14030-14049 None:intergenic 40.0%
TTTCAGACCCAGAAGGTAAT+AGG + tig0009097:14088-14107 None:intergenic 40.0%
AAAGTGATTTCAGACCCAGA+AGG + tig0009097:14095-14114 None:intergenic 40.0%
!! CTGGGTCTGAAATCACTTTT+TGG - tig0009097:14096-14115 Msa1346580:intron 40.0%
TCATATGAGACATGCACGAT+GGG + tig0009097:14269-14288 None:intergenic 40.0%
ATCATATGAGACATGCACGA+TGG + tig0009097:14270-14289 None:intergenic 40.0%
!! ATCTGAATGTTTTGGGCTCT+AGG - tig0009097:14288-14307 Msa1346580:intron 40.0%
CACTTGACGTATCTCTCTTT+AGG - tig0009097:14323-14342 Msa1346580:intron 40.0%
TGAAGAAATTGAGTCTGCGT+CGG + tig0009097:14591-14610 None:intergenic 40.0%
!! TTATCAAAGGTGCTGCTGAT+TGG + tig0009097:14680-14699 None:intergenic 40.0%
! GGAGCTGGTGTTAAAAAACA+AGG - tig0009097:14713-14732 Msa1346580:intron 40.0%
TAAAAAACAAGGCTCCTAGG+TGG - tig0009097:14724-14743 Msa1346580:intron 40.0%
TGAAGTTCAAACACCAGCAT+TGG + tig0009097:14761-14780 None:intergenic 40.0%
TGCTGGTGTTTGAACTTCAA+TGG - tig0009097:14762-14781 Msa1346580:intron 40.0%
CTGGTTGCTTCTCCTAAAAA+TGG - tig0009097:14819-14838 Msa1346580:intron 40.0%
! CTGCAGAATGACATTTTCCT+GGG + tig0009097:14859-14878 None:intergenic 40.0%
! ACTGCAGAATGACATTTTCC+TGG + tig0009097:14860-14879 None:intergenic 40.0%
GATTGGATACTGGTAATCCA+TGG + tig0009097:14910-14929 None:intergenic 40.0%
AATGCTTCAAAGGCAGAGAT+TGG + tig0009097:14927-14946 None:intergenic 40.0%
CAATCACTCACAAGCAATCT+TGG + tig0009097:14976-14995 None:intergenic 40.0%
!!! AGTTGCTGATTTTACTTGGC+AGG - tig0009097:15105-15124 Msa1346580:CDS 40.0%
!! TTTACTTGGCAGGTTTTAGC+CGG - tig0009097:15115-15134 Msa1346580:CDS 40.0%
CAGTATTGCAGGTCTGATAT+AGG - tig0009097:15154-15173 Msa1346580:CDS 40.0%
ACAACGACCTTAGATGCAAT+TGG - tig0009097:15359-15378 Msa1346580:five_prime_UTR 40.0%
AGCTATCAAACAGACACAAC+TGG + tig0009097:15397-15416 None:intergenic 40.0%
ATGTATGTACTTGCCTGCTT+AGG - tig0009097:15430-15449 Msa1346580:five_prime_UTR 40.0%
TGTATGTACTTGCCTGCTTA+GGG - tig0009097:15431-15450 Msa1346580:five_prime_UTR 40.0%
ACGGTAAAGGGTAGAGAAGA+AGG + tig0009097:11682-11701 None:intergenic 45.0%
! TTGAGTTGTTGCAGAGAGTG+CGG + tig0009097:11738-11757 None:intergenic 45.0%
ATTGAGGAATTGGGTGGAGT+TGG - tig0009097:12027-12046 Msa1346580:three_prime_UTR 45.0%
! GGTGCTTTGGTGATTGATGA+TGG - tig0009097:12171-12190 Msa1346580:intron 45.0%
! ATGGGTTGAGTCAGAGTTGT+TGG - tig0009097:12190-12209 Msa1346580:intron 45.0%
! TGGGTTGAGTCAGAGTTGTT+GGG - tig0009097:12191-12210 Msa1346580:intron 45.0%
ACATCCCTCAAAAGCTCATG+GGG + tig0009097:12225-12244 None:intergenic 45.0%
CACATCCCTCAAAAGCTCAT+GGG + tig0009097:12226-12245 None:intergenic 45.0%
!! AACTTGCTGGACAATTGAGG+AGG + tig0009097:12357-12376 None:intergenic 45.0%
!! GTCAACTTGCTGGACAATTG+AGG + tig0009097:12360-12379 None:intergenic 45.0%
TTGTTGAGCAGGAATGGTTG+AGG - tig0009097:12710-12729 Msa1346580:intron 45.0%
!! TGAGGAGTGGGTTGTTATCT+TGG - tig0009097:12728-12747 Msa1346580:intron 45.0%
!! TTGTTGAGTGAGGTTGGCTT+TGG - tig0009097:12928-12947 Msa1346580:intron 45.0%
TCTTTGAGTGAGGTGTGAGT+TGG - tig0009097:13032-13051 Msa1346580:CDS 45.0%
CTTTGAGTGAGGTGTGAGTT+GGG - tig0009097:13033-13052 Msa1346580:CDS 45.0%
GTTGAGCAGGTATGATTGAG+GGG + tig0009097:13097-13116 None:intergenic 45.0%
CACCAATGCCACTATTCACA+AGG + tig0009097:13341-13360 None:intergenic 45.0%
TTTGCAGCCTCAACTGATGA+CGG - tig0009097:13909-13928 Msa1346580:intron 45.0%
AGAAGGAGTAGCACCTATGT+TGG - tig0009097:14014-14033 Msa1346580:intron 45.0%
GAAGGAGTAGCACCTATGTT+GGG - tig0009097:14015-14034 Msa1346580:intron 45.0%
GATGCACACCCTCCAATTTA+TGG - tig0009097:14167-14186 Msa1346580:intron 45.0%
TAGTTTCCTGCAGGAACTCT+TGG + tig0009097:14245-14264 None:intergenic 45.0%
GTAAAGAGAATATCGCGGTC+TGG - tig0009097:14345-14364 Msa1346580:intron 45.0%
CCAACTCTTGAAAGGAAGGT+AGG + tig0009097:14432-14451 None:intergenic 45.0%
CCTACCTTCCTTTCAAGAGT+TGG - tig0009097:14429-14448 Msa1346580:intron 45.0%
AGAGCCAACTCTTGAAAGGA+AGG + tig0009097:14436-14455 None:intergenic 45.0%
AAAATGTTAACAGGGGCCCT+AGG - tig0009097:14505-14524 Msa1346580:intron 45.0%
AAGAAATTGAGTCTGCGTCG+GGG + tig0009097:14589-14608 None:intergenic 45.0%
GAAGAAATTGAGTCTGCGTC+GGG + tig0009097:14590-14609 None:intergenic 45.0%
GATCTGAAGAACGGGATAGA+TGG + tig0009097:14633-14652 None:intergenic 45.0%
TGATTGGAGATTCTCTGAGC+GGG + tig0009097:14664-14683 None:intergenic 45.0%
CTGATTGGAGATTCTCTGAG+CGG + tig0009097:14665-14684 None:intergenic 45.0%
! AAGTCAAAATGATGGGGAGC+TGG - tig0009097:14698-14717 Msa1346580:intron 45.0%
!! TTTTAGGAGAAGCAACCAGC+TGG + tig0009097:14818-14837 None:intergenic 45.0%
GCAGTTTGGAAAAGTCGGAA+AGG - tig0009097:14875-14894 Msa1346580:CDS 45.0%
CAAAGGCAGAGATTGGATAC+TGG + tig0009097:14920-14939 None:intergenic 45.0%
!! TCTTGGTGTCAAAGCTGCTA+AGG + tig0009097:14959-14978 None:intergenic 45.0%
GATTGCTTGTGAGTGATTGC+TGG - tig0009097:14977-14996 Msa1346580:CDS 45.0%
TTGTGAGTGATTGCTGGAAC+AGG - tig0009097:14983-15002 Msa1346580:CDS 45.0%
!! TTACTTGGCAGGTTTTAGCC+GGG - tig0009097:15116-15135 Msa1346580:CDS 45.0%
TCAGACCTGCAATACTGTGA+GGG + tig0009097:15151-15170 None:intergenic 45.0%
ATCAGACCTGCAATACTGTG+AGG + tig0009097:15152-15171 None:intergenic 45.0%
GCTTTCTGTTTAGTCCAACC+CGG - tig0009097:15187-15206 Msa1346580:five_prime_UTR 45.0%
TAAAAGGGAGAAGGGGGAAA+GGG + tig0009097:15227-15246 None:intergenic 45.0%
ATAAAAGGGAGAAGGGGGAA+AGG + tig0009097:15228-15247 None:intergenic 45.0%
GGTCGTTGTCTACAATCTCA+TGG + tig0009097:15348-15367 None:intergenic 45.0%
! TGAGTTGTTGCAGAGAGTGC+GGG + tig0009097:11737-11756 None:intergenic 50.0%
! ACATGCCCCATGAGCTTTTG+AGG - tig0009097:12217-12236 Msa1346580:intron 50.0%
! CATGCCCCATGAGCTTTTGA+GGG - tig0009097:12218-12237 Msa1346580:intron 50.0%
GCACATCCCTCAAAAGCTCA+TGG + tig0009097:12227-12246 None:intergenic 50.0%
CAGATGATACTTGGCCGACT+CGG - tig0009097:12265-12284 Msa1346580:CDS 50.0%
GCGACAACATTCTTCCGAGT+CGG + tig0009097:12282-12301 None:intergenic 50.0%
TCTCCAACTCCTGCAAACAC+CGG + tig0009097:12310-12329 None:intergenic 50.0%
GACAGGGAATGTCAACTTGC+TGG + tig0009097:12370-12389 None:intergenic 50.0%
ATTCCCTGTCTCCTTGAAGC+AGG - tig0009097:12380-12399 Msa1346580:CDS 50.0%
CTACCTGCTTCAAGGAGACA+GGG + tig0009097:12386-12405 None:intergenic 50.0%
GACAAGTGCTACCTGCTTCA+AGG + tig0009097:12394-12413 None:intergenic 50.0%
AGCAGGAATGGTTGAGGAGT+GGG - tig0009097:12716-12735 Msa1346580:intron 50.0%
ATCTTGGTTGTTGCGTGGCT+CGG - tig0009097:12744-12763 Msa1346580:intron 50.0%
TGAATTCCCAACCCACACCT+TGG - tig0009097:12767-12786 Msa1346580:intron 50.0%
GAACAACCAAGGTGTGGGTT+GGG + tig0009097:12776-12795 None:intergenic 50.0%
TCACGGAACAACCAAGGTGT+GGG + tig0009097:12781-12800 None:intergenic 50.0%
ATCACGGAACAACCAAGGTG+TGG + tig0009097:12782-12801 None:intergenic 50.0%
ACCTTGGTTGTTCCGTGATG+CGG - tig0009097:12783-12802 Msa1346580:intron 50.0%
AGCAGGTATGATTGAGGGGT+GGG + tig0009097:13093-13112 None:intergenic 50.0%
!! TGTGACACATGGGTTGGACT+GGG - tig0009097:13791-13810 Msa1346580:intron 50.0%
GAACTTGCCGTCATCAGTTG+AGG + tig0009097:13919-13938 None:intergenic 50.0%
GCACCTATGTTGGGAAGTTG+AGG - tig0009097:14024-14043 Msa1346580:intron 50.0%
TTGCTTGAGACTTAGCCTGG+TGG + tig0009097:14216-14235 None:intergenic 50.0%
CACTTGCTTGAGACTTAGCC+TGG + tig0009097:14219-14238 None:intergenic 50.0%
ACGATGGGATAGTTTCCTGC+AGG + tig0009097:14254-14273 None:intergenic 50.0%
TGGAGTTGTTCATGCCACCT+AGG + tig0009097:14741-14760 None:intergenic 50.0%
GGCATGAACAACTCCAATGC+TGG - tig0009097:14745-14764 Msa1346580:intron 50.0%
CGGAAAGGATGTGTTCACCA+TGG - tig0009097:14890-14909 Msa1346580:CDS 50.0%
!! AGGTTTTAGCCGGGTGGAAT+TGG - tig0009097:15125-15144 Msa1346580:CDS 50.0%
ATTGGCCCTCACAGTATTGC+AGG - tig0009097:15143-15162 Msa1346580:CDS 50.0%
AAGGGGAGAGACTTAGAAGC+CGG + tig0009097:15209-15228 None:intergenic 50.0%
AAAAGGGAGAAGGGGGAAAG+GGG + tig0009097:15226-15245 None:intergenic 50.0%
GGAATGTAGCAACCCTAAGC+AGG + tig0009097:15446-15465 None:intergenic 50.0%
! GAGTTGTTGCAGAGAGTGCG+GGG + tig0009097:11736-11755 None:intergenic 55.0%
AAGAATGTTGTCGCGTGCGC+CGG - tig0009097:12288-12307 Msa1346580:CDS 55.0%
GCTACCTGCTTCAAGGAGAC+AGG + tig0009097:12387-12406 None:intergenic 55.0%
GAGCAGGAATGGTTGAGGAG+TGG - tig0009097:12715-12734 Msa1346580:intron 55.0%
GGAACAACCAAGGTGTGGGT+TGG + tig0009097:12777-12796 None:intergenic 55.0%
ACCGCATCACGGAACAACCA+AGG + tig0009097:12787-12806 None:intergenic 55.0%
!! TGAGGGGTGGGCTGTTACTT+TGG + tig0009097:13081-13100 None:intergenic 55.0%
GAGCAGGTATGATTGAGGGG+TGG + tig0009097:13094-13113 None:intergenic 55.0%
TCATCATGCAGCCTGGTCCA+AGG - tig0009097:13636-13655 Msa1346580:intron 55.0%
CATCATGCAGCCTGGTCCAA+GGG - tig0009097:13637-13656 Msa1346580:intron 55.0%
ATCATGCAGCCTGGTCCAAG+GGG - tig0009097:13638-13657 Msa1346580:intron 55.0%
CACTGAATGAGAGAGCCCCT+TGG + tig0009097:13656-13675 None:intergenic 55.0%
ATCTCTGGCAGCACTCACCT+TGG + tig0009097:13733-13752 None:intergenic 55.0%
!! CTGTGACACATGGGTTGGAC+TGG - tig0009097:13790-13809 Msa1346580:intron 55.0%
GACACTTGCGTGCAGCAAGA+AGG + tig0009097:13941-13960 None:intergenic 55.0%
! TGAGACTTAGCCTGGTGGTG+CGG + tig0009097:14211-14230 None:intergenic 55.0%
GTGTCTCCAAGAGTTCCTGC+AGG - tig0009097:14236-14255 Msa1346580:intron 55.0%
TTCAACAGCTGAGGCAGGGA+TGG + tig0009097:14553-14572 None:intergenic 55.0%
CAGGTTCAACAGCTGAGGCA+GGG + tig0009097:14557-14576 None:intergenic 55.0%
ACCTCCAGGTTCAACAGCTG+AGG + tig0009097:14562-14581 None:intergenic 55.0%
AGCTGTTGAACCTGGAGGTG+TGG - tig0009097:14563-14582 Msa1346580:intron 55.0%
GAGAGACTTAGAAGCCGGGT+TGG + tig0009097:15204-15223 None:intergenic 55.0%
AGGGGAGAGACTTAGAAGCC+GGG + tig0009097:15208-15227 None:intergenic 55.0%
GTGCGGGGAAAGGAGAGAAG+AGG + tig0009097:11721-11740 None:intergenic 60.0%
! GTTGCAGAGAGTGCGGGGAA+AGG + tig0009097:11731-11750 None:intergenic 60.0%
ATGAGAGAGCCCCTTGGACC+AGG + tig0009097:13650-13669 None:intergenic 60.0%
TTGCAAAGTCCCGCACCACC+AGG - tig0009097:14198-14217 Msa1346580:intron 60.0%
! GAGACTTAGCCTGGTGGTGC+GGG + tig0009097:14210-14229 None:intergenic 60.0%
CCAGGTTCAACAGCTGAGGC+AGG + tig0009097:14558-14577 None:intergenic 60.0%
CCTGCCTCAGCTGTTGAACC+TGG - tig0009097:14555-14574 Msa1346580:intron 60.0%
GCCTCAGCTGTTGAACCTGG+AGG - tig0009097:14558-14577 Msa1346580:intron 60.0%
! TGGAGTTTCTGAGGAGGCCC+AGG - tig0009097:14839-14858 Msa1346580:intron 60.0%
!! CTTGGCAGGTTTTAGCCGGG+TGG - tig0009097:15119-15138 Msa1346580:CDS 60.0%
CTGTGAGGGCCAATTCCACC+CGG + tig0009097:15137-15156 None:intergenic 60.0%
! GCGCCGGTGTTTGCAGGAGT+TGG - tig0009097:12304-12323 Msa1346580:CDS 65.0%
! TCGCGTGCGCCGGTGTTTGC+AGG - tig0009097:12298-12317 Msa1346580:CDS 70.0%
TGCGTCGGGGCCACACCTCC+AGG + tig0009097:14576-14595 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0009097 gene 11666 15577 11666 ID=Msa1346580;Name=Msa1346580
tig0009097 mRNA 11666 15577 11666 ID=Msa1346580-mRNA-1;Parent=Msa1346580;Name=Msa1346580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=397|1|1|1|0.8|0.66|6|463|402
tig0009097 exon 11666 12116 11666 ID=Msa1346580-mRNA-1:exon:5559;Parent=Msa1346580-mRNA-1
tig0009097 exon 12239 12725 12239 ID=Msa1346580-mRNA-1:exon:5558;Parent=Msa1346580-mRNA-1
tig0009097 exon 12934 13110 12934 ID=Msa1346580-mRNA-1:exon:5557;Parent=Msa1346580-mRNA-1
tig0009097 exon 13198 13327 13198 ID=Msa1346580-mRNA-1:exon:5556;Parent=Msa1346580-mRNA-1
tig0009097 exon 13509 13596 13509 ID=Msa1346580-mRNA-1:exon:5555;Parent=Msa1346580-mRNA-1
tig0009097 exon 14842 15577 14842 ID=Msa1346580-mRNA-1:exon:5554;Parent=Msa1346580-mRNA-1
tig0009097 five_prime_UTR 15181 15577 15181 ID=Msa1346580-mRNA-1:five_prime_utr;Parent=Msa1346580-mRNA-1
tig0009097 CDS 14842 15180 14842 ID=Msa1346580-mRNA-1:cds;Parent=Msa1346580-mRNA-1
tig0009097 CDS 13509 13596 13509 ID=Msa1346580-mRNA-1:cds;Parent=Msa1346580-mRNA-1
tig0009097 CDS 13198 13327 13198 ID=Msa1346580-mRNA-1:cds;Parent=Msa1346580-mRNA-1
tig0009097 CDS 12934 13110 12934 ID=Msa1346580-mRNA-1:cds;Parent=Msa1346580-mRNA-1
tig0009097 CDS 12251 12725 12251 ID=Msa1346580-mRNA-1:cds;Parent=Msa1346580-mRNA-1
tig0009097 three_prime_UTR 12239 12250 12239 ID=Msa1346580-mRNA-1:three_prime_utr;Parent=Msa1346580-mRNA-1
tig0009097 three_prime_UTR 11666 12116 11666 ID=Msa1346580-mRNA-1:three_prime_utr;Parent=Msa1346580-mRNA-1
Gene Sequence

>Msa1346580

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTCGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTCATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTGTCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGA
Protein sequence

>Msa1346580

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE*