Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085770 | XP_024641885.1 | 98.758 | 322 | 2 | 1 | 1 | 322 | 1 | 320 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085770 | sp|Q9SZ96|URGT5_ARATH | 83.125 | 320 | 54 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085770 | G7IBV3 | 98.758 | 322 | 2 | 1 | 1 | 322 | 1 | 320 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038110 | Msa0085770 | 0.845721 | 3.403850e-59 | -8.615850e-47 |
| Msa0085770 | Msa0089080 | 0.812458 | 4.196432e-51 | -8.615850e-47 |
| Msa0085770 | Msa0135890 | 0.818562 | 1.837641e-52 | -8.615850e-47 |
| Msa0085770 | Msa0606120 | 0.824229 | 9.040623e-54 | -8.615850e-47 |
| Msa0085770 | Msa1463590 | 0.828629 | 8.083631e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085770 | MtrunA17_Chr1g0201531 | 98.758 | 322 | 2 | 1 | 1 | 322 | 1 | 320 | 0.0 | 644 |
| Msa0085770 | MtrunA17_Chr3g0129401 | 79.128 | 321 | 67 | 0 | 1 | 321 | 1 | 321 | 0.0 | 534 |
| Msa0085770 | MtrunA17_Chr8g0383381 | 74.074 | 324 | 81 | 1 | 1 | 321 | 1 | 324 | 1.16e-180 | 502 |
| Msa0085770 | MtrunA17_Chr1g0157501 | 53.247 | 308 | 133 | 4 | 17 | 319 | 15 | 316 | 6.61e-95 | 285 |
| Msa0085770 | MtrunA17_Chr5g0393381 | 50.313 | 320 | 153 | 5 | 8 | 322 | 7 | 325 | 7.87e-93 | 280 |
| Msa0085770 | MtrunA17_Chr6g0467391 | 38.235 | 306 | 188 | 1 | 16 | 321 | 13 | 317 | 2.04e-62 | 201 |
| Msa0085770 | MtrunA17_Chr6g0467371 | 38.235 | 306 | 188 | 1 | 16 | 321 | 13 | 317 | 2.04e-62 | 201 |
| Msa0085770 | MtrunA17_Chr2g0326791 | 38.776 | 294 | 179 | 1 | 16 | 309 | 13 | 305 | 6.53e-62 | 200 |
| Msa0085770 | MtrunA17_Chr4g0028931 | 37.543 | 293 | 182 | 1 | 16 | 308 | 13 | 304 | 2.40e-58 | 191 |
| Msa0085770 | MtrunA17_Chr3g0128951 | 37.218 | 266 | 166 | 1 | 32 | 297 | 29 | 293 | 5.49e-52 | 174 |
| Msa0085770 | MtrunA17_Chr3g0128961 | 33.651 | 315 | 183 | 3 | 32 | 321 | 29 | 342 | 4.16e-49 | 167 |
| Msa0085770 | MtrunA17_Chr2g0298931 | 27.329 | 322 | 222 | 4 | 4 | 318 | 45 | 361 | 1.75e-25 | 105 |
| Msa0085770 | MtrunA17_Chr5g0446851 | 27.576 | 330 | 216 | 6 | 4 | 320 | 46 | 365 | 2.74e-24 | 101 |
| Msa0085770 | MtrunA17_Chr3g0114581 | 28.349 | 321 | 198 | 9 | 18 | 321 | 23 | 328 | 1.68e-17 | 82.0 |
| Msa0085770 | MtrunA17_Chr1g0160071 | 27.692 | 325 | 196 | 11 | 18 | 320 | 22 | 329 | 1.26e-16 | 79.3 |
| Msa0085770 | MtrunA17_Chr3g0139091 | 26.132 | 287 | 196 | 8 | 23 | 300 | 24 | 303 | 1.18e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085770 | AT4G09810.1 | 83.125 | 320 | 54 | 0 | 1 | 320 | 1 | 320 | 0.0 | 570 |
| Msa0085770 | AT1G34020.2 | 84.375 | 320 | 50 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0085770 | AT1G34020.1 | 84.375 | 320 | 50 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0085770 | AT1G34020.3 | 84.375 | 320 | 50 | 0 | 1 | 320 | 1 | 320 | 0.0 | 548 |
| Msa0085770 | AT4G39390.3 | 78.370 | 319 | 69 | 0 | 2 | 320 | 3 | 321 | 0.0 | 508 |
| Msa0085770 | AT4G39390.1 | 78.370 | 319 | 69 | 0 | 2 | 320 | 7 | 325 | 0.0 | 508 |
| Msa0085770 | AT4G39390.2 | 78.370 | 319 | 69 | 0 | 2 | 320 | 7 | 325 | 0.0 | 508 |
| Msa0085770 | AT4G09810.2 | 82.955 | 264 | 45 | 0 | 58 | 321 | 1 | 264 | 5.09e-170 | 473 |
| Msa0085770 | AT4G09810.3 | 83.700 | 227 | 37 | 0 | 1 | 227 | 1 | 227 | 1.39e-143 | 405 |
| Msa0085770 | AT5G42420.1 | 51.678 | 298 | 141 | 2 | 2 | 297 | 3 | 299 | 1.33e-98 | 295 |
| Msa0085770 | AT1G21070.1 | 51.090 | 321 | 151 | 4 | 1 | 318 | 1 | 318 | 5.99e-98 | 293 |
| Msa0085770 | AT1G76670.2 | 52.063 | 315 | 138 | 4 | 6 | 308 | 5 | 318 | 1.22e-96 | 290 |
| Msa0085770 | AT1G76670.1 | 52.063 | 315 | 138 | 4 | 6 | 308 | 5 | 318 | 1.22e-96 | 290 |
| Msa0085770 | AT1G06890.4 | 37.075 | 294 | 180 | 3 | 32 | 322 | 29 | 320 | 8.61e-57 | 187 |
| Msa0085770 | AT1G06890.3 | 37.075 | 294 | 180 | 3 | 32 | 322 | 29 | 320 | 8.93e-57 | 187 |
| Msa0085770 | AT1G06890.2 | 37.075 | 294 | 180 | 3 | 32 | 322 | 29 | 320 | 9.60e-57 | 187 |
| Msa0085770 | AT1G06890.1 | 37.075 | 294 | 180 | 3 | 32 | 322 | 29 | 320 | 9.60e-57 | 187 |
| Msa0085770 | AT2G30460.1 | 39.098 | 266 | 161 | 1 | 32 | 297 | 29 | 293 | 4.03e-56 | 186 |
| Msa0085770 | AT2G30460.2 | 39.098 | 266 | 161 | 1 | 32 | 297 | 29 | 293 | 4.03e-56 | 186 |
| Msa0085770 | AT2G28315.1 | 34.906 | 318 | 194 | 3 | 17 | 322 | 14 | 330 | 7.24e-55 | 182 |
| Msa0085770 | AT2G28315.2 | 35.593 | 295 | 189 | 1 | 17 | 311 | 14 | 307 | 1.57e-54 | 181 |
| Msa0085770 | AT2G30460.3 | 38.189 | 254 | 156 | 1 | 44 | 297 | 20 | 272 | 1.19e-50 | 171 |
| Msa0085770 | AT2G30460.6 | 38.189 | 254 | 156 | 1 | 44 | 297 | 20 | 272 | 1.19e-50 | 171 |
| Msa0085770 | AT2G30460.5 | 38.189 | 254 | 156 | 1 | 44 | 297 | 20 | 272 | 1.19e-50 | 171 |
| Msa0085770 | AT5G42420.2 | 51.240 | 121 | 58 | 1 | 177 | 297 | 113 | 232 | 1.56e-35 | 130 |
| Msa0085770 | AT5G42420.2 | 48.598 | 107 | 53 | 1 | 2 | 106 | 3 | 109 | 1.58e-24 | 100 |
| Msa0085770 | AT2G30460.4 | 35.000 | 240 | 139 | 2 | 32 | 254 | 29 | 268 | 1.08e-33 | 127 |
| Msa0085770 | AT5G55950.4 | 30.851 | 282 | 186 | 4 | 20 | 297 | 3 | 279 | 7.83e-27 | 108 |
| Msa0085770 | AT5G55950.1 | 30.851 | 282 | 186 | 4 | 20 | 297 | 63 | 339 | 1.43e-26 | 108 |
| Msa0085770 | AT5G55950.3 | 29.151 | 271 | 173 | 4 | 36 | 297 | 1 | 261 | 5.71e-21 | 92.0 |
| Msa0085770 | AT5G55950.2 | 33.679 | 193 | 124 | 2 | 20 | 208 | 63 | 255 | 5.72e-21 | 91.7 |
| Msa0085770 | AT5G57100.1 | 24.834 | 302 | 214 | 5 | 3 | 297 | 51 | 346 | 1.27e-18 | 86.3 |
| Msa0085770 | AT5G57100.2 | 28.866 | 194 | 132 | 2 | 20 | 208 | 70 | 262 | 1.03e-15 | 76.6 |
| Msa0085770 | AT1G77610.1 | 27.245 | 323 | 198 | 10 | 18 | 320 | 17 | 322 | 7.16e-15 | 74.7 |
| Msa0085770 | AT1G21870.1 | 27.864 | 323 | 196 | 13 | 18 | 320 | 23 | 328 | 2.16e-13 | 70.5 |
| Msa0085770 | AT5G57100.3 | 30.120 | 166 | 108 | 3 | 3 | 161 | 51 | 215 | 3.70e-13 | 68.9 |
Find 109 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATCTTCATGTAGTTAT+AGG | 0.189055 | 1_2:+66068000 | Msa0085770:CDS |
| GAGCATAGGTATTGTTCTTT+TGG | 0.204855 | 1_2:+66065917 | Msa0085770:CDS |
| ACTAAGTTCTTTCAACCTTT+TGG | 0.208492 | 1_2:+66067181 | Msa0085770:CDS |
| GGCTGGATCACTATTGTTAT+TGG | 0.217609 | 1_2:+66067223 | Msa0085770:CDS |
| TTAAATTTGATTTCTTGTTT+TGG | 0.254326 | 1_2:+66068284 | Msa0085770:three_prime_UTR |
| TTTGCTAACTTCTCTATTGT+TGG | 0.273526 | 1_2:+66065686 | Msa0085770:CDS |
| TATTTGAAATTAAACCTTAC+TGG | 0.279006 | 1_2:+66068230 | Msa0085770:three_prime_UTR |
| CTGCTTATTGGAAGTTTGTT+TGG | 0.283114 | 1_2:+66065863 | Msa0085770:CDS |
| ATCTGCCAATGCAGATAAAT+TGG | 0.283951 | 1_2:-66067891 | None:intergenic |
| TGGGCCCTCTTCTAGACTAT+TGG | 0.285839 | 1_2:+66067243 | Msa0085770:CDS |
| GATCCCTGTATCCTGCTTAT+TGG | 0.289081 | 1_2:+66065851 | Msa0085770:CDS |
| GGTGGTTATGGCTTCAGTTT+TGG | 0.294456 | 1_2:+66065410 | Msa0085770:CDS |
| TTCTTACGATGCAGCCTCTT+TGG | 0.298652 | 1_2:+66067292 | Msa0085770:CDS |
| CATTGTAAACAAAGCTTTGA+TGG | 0.302927 | 1_2:+66065388 | Msa0085770:CDS |
| ACTAGCTGATATCTCCTTAT+AGG | 0.304873 | 1_2:+66068309 | Msa0085770:three_prime_UTR |
| TACAGGGATCATACTCAATT+TGG | 0.310691 | 1_2:-66065838 | None:intergenic |
| TTCTTCTCAGCCTTGCTTGA+AGG | 0.316546 | 1_2:-66065308 | None:intergenic |
| GGAAAAGATGAAAACTTTCC+AGG | 0.329181 | 1_2:-66068339 | None:intergenic |
| TAGAAAAGGTGGGGTGTGTT+AGG | 0.334540 | 1_2:-66064482 | None:intergenic |
| GAGTTGTATGGTATGGTATA+TGG | 0.344783 | 1_2:-66064437 | None:intergenic |
| CTATCATGACGCTCGTACTA+CGG | 0.348850 | 1_2:+66065603 | Msa0085770:CDS |
| AAAGCTTTGATGGGTGGTTA+TGG | 0.350738 | 1_2:+66065398 | Msa0085770:CDS |
| TGTACTCCACACTGCTATAA+AGG | 0.354411 | 1_2:-66065997 | None:intergenic |
| TTAATCTTCATGTAGTTATA+GGG | 0.355141 | 1_2:+66068001 | Msa0085770:CDS |
| AGATTGTTGTTAATTGTGTT+TGG | 0.359187 | 1_2:+66064366 | Msa0085770:five_prime_UTR |
| TCTTCATATGTCCAAGTACT+TGG | 0.370729 | 1_2:-66067930 | None:intergenic |
| ACAGCAAGATAGTTGATTCT+AGG | 0.373453 | 1_2:+66068193 | Msa0085770:three_prime_UTR |
| GCTGGATCACTATTGTTATT+GGG | 0.390290 | 1_2:+66067224 | Msa0085770:CDS |
| TTCCAGGGAGCATACCTATA+AGG | 0.395801 | 1_2:-66068323 | None:intergenic |
| ACTTCCAATAAGCAGGATAC+AGG | 0.411849 | 1_2:-66065855 | None:intergenic |
| CAGATTGATTGCTTTGCAGC+AGG | 0.415881 | 1_2:-66064408 | None:intergenic |
| TGAAAGTGGAGGGAATGTTA+TGG | 0.419562 | 1_2:+66065231 | Msa0085770:five_prime_UTR |
| GATTGTTGTTAATTGTGTTT+GGG | 0.420340 | 1_2:+66064367 | Msa0085770:five_prime_UTR |
| TAAAATAATTAAAACCAGTA+AGG | 0.425675 | 1_2:-66068244 | None:intergenic |
| GCTGTATCTTTCCAAGTACT+TGG | 0.427096 | 1_2:+66067919 | Msa0085770:CDS |
| GCCTGCAGCTACAACGTTAA+CGG | 0.427426 | 1_2:+66065559 | Msa0085770:intron |
| GACGCTCGTACTACGGGTGC+TGG | 0.431582 | 1_2:+66065610 | Msa0085770:CDS |
| CTCAGCCAATTTATCTGCAT+TGG | 0.439399 | 1_2:+66067886 | Msa0085770:CDS |
| TTCAATGTTGTCACATCTGT+TGG | 0.444323 | 1_2:+66065359 | Msa0085770:CDS |
| ACATTATTCACTCATTATGA+TGG | 0.450099 | 1_2:+66068142 | Msa0085770:three_prime_UTR |
| CATCCATGCCGCAGCATCTA+CGG | 0.452040 | 1_2:-66065336 | None:intergenic |
| GAGATCCCTGTGAAGTTTGA+AGG | 0.457079 | 1_2:+66065267 | Msa0085770:five_prime_UTR |
| TTTAACCCTTCAAACTTCAC+AGG | 0.459183 | 1_2:-66065273 | None:intergenic |
| TTCAAGCAAGGCTGAGAAGA+AGG | 0.461865 | 1_2:+66065310 | Msa0085770:CDS |
| TATCATGACGCTCGTACTAC+GGG | 0.465542 | 1_2:+66065604 | Msa0085770:CDS |
| AGTTTAATGTGGAACTCAGT+TGG | 0.467237 | 1_2:+66065719 | Msa0085770:CDS |
| AAGAATGATCTGAGGTTGAA+AGG | 0.492079 | 1_2:-66064459 | None:intergenic |
| TTGAAAGGAGTTGTATGGTA+TGG | 0.497267 | 1_2:-66064444 | None:intergenic |
| CCTGCAGCTACAACGTTAAC+GGG | 0.498929 | 1_2:+66065560 | Msa0085770:intron |
| GGGATGATAATAGCTGTTGT+TGG | 0.500626 | 1_2:+66068021 | Msa0085770:CDS |
| CTCCAACGTTCCTTTCCACC+CGG | 0.506064 | 1_2:-66068075 | None:intergenic |
| CAACTGCAATAGTGCATGAC+AGG | 0.512316 | 1_2:-66067855 | None:intergenic |
| TGAGGTTGAAAGGAGTTGTA+TGG | 0.515624 | 1_2:-66064449 | None:intergenic |
| CAAACAAACTTCCAATAAGC+AGG | 0.516695 | 1_2:-66065862 | None:intergenic |
| CTCATCAAAGCCGGGTGGAA+AGG | 0.518918 | 1_2:+66068065 | Msa0085770:CDS |
| GTCAACCAATAGTCTAGAAG+AGG | 0.519084 | 1_2:-66067248 | None:intergenic |
| TGGTAATGCCTCATCAAAGC+CGG | 0.520386 | 1_2:+66068056 | Msa0085770:CDS |
| CATACAGCACCCGCACAGGC+TGG | 0.523624 | 1_2:+66067206 | Msa0085770:CDS |
| ACTCCTGCATTATTTGAAAG+TGG | 0.523920 | 1_2:+66065217 | Msa0085770:five_prime_UTR |
| CCTCCACTTTCAAATAATGC+AGG | 0.524868 | 1_2:-66065220 | None:intergenic |
| CTTTCCACCCGGCTTTGATG+AGG | 0.529809 | 1_2:-66068064 | None:intergenic |
| ATTGTAAACAAAGCTTTGAT+GGG | 0.537492 | 1_2:+66065389 | Msa0085770:CDS |
| CTGTCATGCACTATTGCAGT+TGG | 0.539337 | 1_2:+66067856 | Msa0085770:CDS |
| CTCCTTATAGGTATGCTCCC+TGG | 0.542778 | 1_2:+66068321 | Msa0085770:three_prime_UTR |
| CAGCCGTAGATGCTGCGGCA+TGG | 0.544538 | 1_2:+66065333 | Msa0085770:CDS |
| CTGCATTATTTGAAAGTGGA+GGG | 0.545733 | 1_2:+66065221 | Msa0085770:five_prime_UTR |
| AATTTAAAGAATTACAAATG+AGG | 0.546496 | 1_2:-66068268 | None:intergenic |
| AATAGTGATCCAGCCTGTGC+GGG | 0.549143 | 1_2:-66067215 | None:intergenic |
| TGTCATGCACTATTGCAGTT+GGG | 0.557390 | 1_2:+66067857 | Msa0085770:CDS |
| GAAATGAAGCTAACCGTGGA+TGG | 0.558198 | 1_2:-66064514 | None:intergenic |
| AGATCCCTGTGAAGTTTGAA+GGG | 0.562155 | 1_2:+66065268 | Msa0085770:five_prime_UTR |
| TGATTGCTTTGCAGCAGGAG+TGG | 0.562477 | 1_2:-66064403 | None:intergenic |
| GCAGATAAATTGGCTGAGGT+TGG | 0.563030 | 1_2:-66067881 | None:intergenic |
| GACGTAAGTGTAAACATGAA+AGG | 0.563776 | 1_2:+66065963 | Msa0085770:CDS |
| TCTATTCACACCTCCATCCA+CGG | 0.564926 | 1_2:+66064501 | Msa0085770:five_prime_UTR |
| GTAAACAAAGCTTTGATGGG+TGG | 0.567414 | 1_2:+66065392 | Msa0085770:CDS |
| CGGGTGCTGTATGTCCCAAA+AGG | 0.569410 | 1_2:-66067196 | None:intergenic |
| GAAAAGATGAAAACTTTCCA+GGG | 0.570089 | 1_2:-66068338 | None:intergenic |
| GGAGGTGTGAATAGAAAAGG+TGG | 0.570733 | 1_2:-66064493 | None:intergenic |
| GATGGAGGTGTGAATAGAAA+AGG | 0.575078 | 1_2:-66064496 | None:intergenic |
| AGTATGTTCATTATCTTCAA+CGG | 0.576478 | 1_2:+66067150 | Msa0085770:intron |
| GGTAATGCCTCATCAAAGCC+GGG | 0.576676 | 1_2:+66068057 | Msa0085770:CDS |
| CTTCCAATAAGCAGGATACA+GGG | 0.577864 | 1_2:-66065854 | None:intergenic |
| TCGGACAATGGAAGATGAGA+TGG | 0.578480 | 1_2:-66065644 | None:intergenic |
| CCTGCATTATTTGAAAGTGG+AGG | 0.582054 | 1_2:+66065220 | Msa0085770:five_prime_UTR |
| GGGACATACAGCACCCGCAC+AGG | 0.586372 | 1_2:+66067202 | Msa0085770:CDS |
| GAATGAATGTCAGTTTAATG+TGG | 0.588693 | 1_2:+66065708 | Msa0085770:CDS |
| ACAATGGAAGATGAGATGGC+TGG | 0.591393 | 1_2:-66065640 | None:intergenic |
| TTAACCCTTCAAACTTCACA+GGG | 0.592202 | 1_2:-66065272 | None:intergenic |
| TGTGAAAGAATCCGAAAACA+TGG | 0.594957 | 1_2:+66064245 | Msa0085770:five_prime_UTR |
| ACGCTCGTACTACGGGTGCT+GGG | 0.598648 | 1_2:+66065611 | Msa0085770:CDS |
| CAATAGTGATCCAGCCTGTG+CGG | 0.599047 | 1_2:-66067216 | None:intergenic |
| GAACATGGCTCCTTCAAGCA+AGG | 0.600027 | 1_2:+66065298 | Msa0085770:exon |
| AAGTGGAGGGAATGTTATGG+AGG | 0.604217 | 1_2:+66065234 | Msa0085770:five_prime_UTR |
| GTTGTTGGAATGATGTGGTA+TGG | 0.618331 | 1_2:+66068036 | Msa0085770:CDS |
| AGAGACACAAAACTGAGCAT+AGG | 0.624573 | 1_2:+66065903 | Msa0085770:CDS |
| GAGGTGTGAATAGAAAAGGT+GGG | 0.625217 | 1_2:-66064492 | None:intergenic |
| GAAGGCAGCCGTAGATGCTG+CGG | 0.628788 | 1_2:+66065328 | Msa0085770:CDS |
| TTGCTGCCTTTATAGCAGTG+TGG | 0.629676 | 1_2:+66065991 | Msa0085770:CDS |
| AGCCGGGTGGAAAGGAACGT+TGG | 0.631506 | 1_2:+66068073 | Msa0085770:CDS |
| TTATCCAGAACTTACCAAAG+AGG | 0.632878 | 1_2:-66067306 | None:intergenic |
| TCAACCAATAGTCTAGAAGA+GGG | 0.636120 | 1_2:-66067247 | None:intergenic |
| ATGAAGCTAACCGTGGATGG+AGG | 0.636533 | 1_2:-66064511 | None:intergenic |
| CAATGCAGATAAATTGGCTG+AGG | 0.640425 | 1_2:-66067885 | None:intergenic |
| CTACCAGCAAAACAGAAAGT+CGG | 0.648557 | 1_2:+66068109 | Msa0085770:CDS |
| AGGTGTGAATAGAAAAGGTG+GGG | 0.689247 | 1_2:-66064491 | None:intergenic |
| AATGCCTCATCAAAGCCGGG+TGG | 0.721446 | 1_2:+66068060 | Msa0085770:CDS |
| TAGCTGTTGTTGGAATGATG+TGG | 0.725934 | 1_2:+66068031 | Msa0085770:CDS |
| GTGTTAGGAAGAATGATCTG+AGG | 0.729025 | 1_2:-66064467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTAATTTATTTGAAT+TGG | + | chr1_2:66064838-66064857 | Msa0085770:intron | 10.0% |
| !! | AAAAGTAAATAAACAATTTA+AGG | - | chr1_2:66066478-66066497 | None:intergenic | 10.0% |
| !! | AATATAAATTTGATATAACA+AGG | - | chr1_2:66067431-66067450 | None:intergenic | 10.0% |
| !! | GCATATAATTATATTATAAA+CGG | - | chr1_2:66067656-66067675 | None:intergenic | 10.0% |
| !! | TATAATATAATTATATGCTT+AGG | + | chr1_2:66067658-66067677 | Msa0085770:intron | 10.0% |
| !!! | AATTTTCCTTTTTCATTTTT+TGG | + | chr1_2:66064573-66064592 | Msa0085770:intron | 15.0% |
| !!! | TTTTTTTATCTTGTTGAAAT+GGG | - | chr1_2:66064629-66064648 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCTTGTTGAAA+TGG | - | chr1_2:66064630-66064649 | None:intergenic | 15.0% |
| !!! | TAATTTATTTGAATTGGTTT+AGG | + | chr1_2:66064844-66064863 | Msa0085770:intron | 15.0% |
| !! | AAAAACTATTGTATTCAAAT+AGG | - | chr1_2:66065098-66065117 | None:intergenic | 15.0% |
| !!! | AGTTTTATGATATATTAACT+GGG | - | chr1_2:66065493-66065512 | None:intergenic | 15.0% |
| !!! | AAGTTTTATGATATATTAAC+TGG | - | chr1_2:66065494-66065513 | None:intergenic | 15.0% |
| !! | TAAAAGAAAATCATACTTAA+AGG | - | chr1_2:66065537-66065556 | None:intergenic | 15.0% |
| !! | TTATATTAATTTAATGCAAG+CGG | - | chr1_2:66067530-66067549 | None:intergenic | 15.0% |
| !!! | TTTTATTATATCTTGAACAT+TGG | + | chr1_2:66067592-66067611 | Msa0085770:intron | 15.0% |
| !!! | ACAATACTTGTTTTAATAAT+GGG | + | chr1_2:66067952-66067971 | Msa0085770:CDS | 15.0% |
| !! | TAAAATAATTAAAACCAGTA+AGG | - | chr1_2:66068247-66068266 | None:intergenic | 15.0% |
| !! | AATTTAAAGAATTACAAATG+AGG | - | chr1_2:66068271-66068290 | None:intergenic | 15.0% |
| !!! | TTAAATTTGATTTCTTGTTT+TGG | + | chr1_2:66068284-66068303 | Msa0085770:three_prime_UTR | 15.0% |
| !!! | AAATAAATTCATTTTGATCA+TGG | - | chr1_2:66068363-66068382 | None:intergenic | 15.0% |
| !!! | TAATTAACTAACCATGTTTT+CGG | - | chr1_2:66064259-66064278 | None:intergenic | 20.0% |
| !!! | TATTATTTTGAGTTGATGAA+TGG | - | chr1_2:66064324-66064343 | None:intergenic | 20.0% |
| !! | TAAGAAAAATGAAAGAGAAA+AGG | - | chr1_2:66064543-66064562 | None:intergenic | 20.0% |
| !! | ATCAAACCAAAAAATGAAAA+AGG | - | chr1_2:66064582-66064601 | None:intergenic | 20.0% |
| !! | AGTGTAAAAAATCATGTTAT+TGG | - | chr1_2:66064771-66064790 | None:intergenic | 20.0% |
| !!! | GAAAACAAATTTTAGAAGTT+CGG | - | chr1_2:66065666-66065685 | None:intergenic | 20.0% |
| !!! | AAAGAAACAAATTTAACTTC+TGG | - | chr1_2:66065799-66065818 | None:intergenic | 20.0% |
| !!! | TGTATTTGTTTCTTAGAATT+TGG | + | chr1_2:66066073-66066092 | Msa0085770:intron | 20.0% |
| !!! | GTATTTGTTTCTTAGAATTT+GGG | + | chr1_2:66066074-66066093 | Msa0085770:intron | 20.0% |
| !!! | AAGTGATTCAATTTTTAATG+CGG | - | chr1_2:66066268-66066287 | None:intergenic | 20.0% |
| !! | AAATTAAACGTATAGATACT+TGG | + | chr1_2:66067350-66067369 | Msa0085770:intron | 20.0% |
| !! | TATATTAATTTAATGCAAGC+GGG | - | chr1_2:66067529-66067548 | None:intergenic | 20.0% |
| !!! | GACAATACTTGTTTTAATAA+TGG | + | chr1_2:66067951-66067970 | Msa0085770:CDS | 20.0% |
| !! | TTAATCTTCATGTAGTTATA+GGG | + | chr1_2:66068001-66068020 | Msa0085770:CDS | 20.0% |
| !!! | TATTTGAAATTAAACCTTAC+TGG | + | chr1_2:66068230-66068249 | Msa0085770:three_prime_UTR | 20.0% |
| !! | AGATTGTTGTTAATTGTGTT+TGG | + | chr1_2:66064366-66064385 | Msa0085770:five_prime_UTR | 25.0% |
| !! | GATTGTTGTTAATTGTGTTT+GGG | + | chr1_2:66064367-66064386 | Msa0085770:five_prime_UTR | 25.0% |
| ! | AAAAATGAAAGAGAAAAGGA+AGG | - | chr1_2:66064539-66064558 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAATTGAGAATG+TGG | - | chr1_2:66064566-66064585 | None:intergenic | 25.0% |
| !! | ATTGTAAACAAAGCTTTGAT+GGG | + | chr1_2:66065389-66065408 | Msa0085770:CDS | 25.0% |
| ! | TATCATTAAGAAACAGGTAA+AGG | - | chr1_2:66065442-66065461 | None:intergenic | 25.0% |
| ! | CAGAAATATCATTAAGAAAC+AGG | - | chr1_2:66065448-66065467 | None:intergenic | 25.0% |
| ! | AAGAAAATCATACTTAAAGG+AGG | - | chr1_2:66065534-66065553 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTTTTTTGACCAT+TGG | + | chr1_2:66065808-66065827 | Msa0085770:intron | 25.0% |
| !! | TAAATGAAGGGTATACTAAA+TGG | - | chr1_2:66066193-66066212 | None:intergenic | 25.0% |
| !! | AGTGATTCAATTTTTAATGC+GGG | - | chr1_2:66066267-66066286 | None:intergenic | 25.0% |
| !! | TTTAGACTTTCAATTTTGTG+CGG | + | chr1_2:66066499-66066518 | Msa0085770:intron | 25.0% |
| ! | GGATTAAAAATTAGATGCTT+AGG | - | chr1_2:66066599-66066618 | None:intergenic | 25.0% |
| !! | AAGCATCTAATTTTTAATCC+AGG | + | chr1_2:66066599-66066618 | Msa0085770:intron | 25.0% |
| ! | ATGGCAGTTAAAATTCTAAA+TGG | - | chr1_2:66066625-66066644 | None:intergenic | 25.0% |
| ! | AGAAATCTATAGATGGAATT+GGG | + | chr1_2:66066650-66066669 | Msa0085770:intron | 25.0% |
| ! | TGATACTATCTTAGAATTTG+AGG | + | chr1_2:66066812-66066831 | Msa0085770:intron | 25.0% |
| ! | GATACTATCTTAGAATTTGA+GGG | + | chr1_2:66066813-66066832 | Msa0085770:intron | 25.0% |
| ! | AGACACATATACCAATTAAA+AGG | - | chr1_2:66067062-66067081 | None:intergenic | 25.0% |
| ! | TCTGTAGCATTCAATATTAA+TGG | + | chr1_2:66067106-66067125 | Msa0085770:intron | 25.0% |
| ! | CTGTAGCATTCAATATTAAT+GGG | + | chr1_2:66067107-66067126 | Msa0085770:intron | 25.0% |
| ! | AGTATGTTCATTATCTTCAA+CGG | + | chr1_2:66067150-66067169 | Msa0085770:intron | 25.0% |
| ! | AATTATCTACACATATTGGA+AGG | - | chr1_2:66067461-66067480 | None:intergenic | 25.0% |
| ! | ATGCAATTATCTACACATAT+TGG | - | chr1_2:66067465-66067484 | None:intergenic | 25.0% |
| ! | AATCTACTTATCAACATACT+TGG | + | chr1_2:66067548-66067567 | Msa0085770:intron | 25.0% |
| ! | ATTATATCTTGAACATTGGT+AGG | + | chr1_2:66067596-66067615 | Msa0085770:intron | 25.0% |
| ! | GTATGTGTAATGAATTTCAT+AGG | + | chr1_2:66067626-66067645 | Msa0085770:intron | 25.0% |
| ! | CATCATTGAAATGTCAAATT+CGG | - | chr1_2:66067714-66067733 | None:intergenic | 25.0% |
| !! | ACATTTCAATGATGATGAAA+CGG | + | chr1_2:66067720-66067739 | Msa0085770:intron | 25.0% |
| ! | TATAGAACGAAATTGAGAAT+TGG | + | chr1_2:66067748-66067767 | Msa0085770:intron | 25.0% |
| !!! | ATAATGGGATTCTTTTTCTT+TGG | + | chr1_2:66067967-66067986 | Msa0085770:CDS | 25.0% |
| !! | TAATGGGATTCTTTTTCTTT+GGG | + | chr1_2:66067968-66067987 | Msa0085770:CDS | 25.0% |
| ! | CTTAATCTTCATGTAGTTAT+AGG | + | chr1_2:66068000-66068019 | Msa0085770:CDS | 25.0% |
| ! | ACATTATTCACTCATTATGA+TGG | + | chr1_2:66068142-66068161 | Msa0085770:three_prime_UTR | 25.0% |
| TGATACACTCAATTTGGATT+TGG | - | chr1_2:66064928-66064947 | None:intergenic | 30.0% | |
| CTAAAGTGATACACTCAATT+TGG | - | chr1_2:66064934-66064953 | None:intergenic | 30.0% | |
| ATTGAGTGTATCACTTTAGA+TGG | + | chr1_2:66064935-66064954 | Msa0085770:intron | 30.0% | |
| CAATAGTCTGAATTCAAAAG+TGG | - | chr1_2:66065036-66065055 | None:intergenic | 30.0% | |
| TTGAAGGGTTAAAAAGAACA+TGG | + | chr1_2:66065283-66065302 | Msa0085770:exon | 30.0% | |
| ! | CATTGTAAACAAAGCTTTGA+TGG | + | chr1_2:66065388-66065407 | Msa0085770:CDS | 30.0% |
| !! | AATTTTAGAAGTTCGGACAA+TGG | - | chr1_2:66065659-66065678 | None:intergenic | 30.0% |
| TTTGCTAACTTCTCTATTGT+TGG | + | chr1_2:66065686-66065705 | Msa0085770:CDS | 30.0% | |
| GAATGAATGTCAGTTTAATG+TGG | + | chr1_2:66065708-66065727 | Msa0085770:CDS | 30.0% | |
| TGGATTCTATCAAGTAAGTT+TGG | + | chr1_2:66065739-66065758 | Msa0085770:intron | 30.0% | |
| ! | GAAACAAATTTAACTTCTGG+AGG | - | chr1_2:66065796-66065815 | None:intergenic | 30.0% |
| !! | AGCATAGGTATTGTTCTTTT+GGG | + | chr1_2:66065918-66065937 | Msa0085770:CDS | 30.0% |
| ! | TGTTTCTTAGAATTTGGGTT+TGG | + | chr1_2:66066079-66066098 | Msa0085770:intron | 30.0% |
| ! | GTTTCTTAGAATTTGGGTTT+GGG | + | chr1_2:66066080-66066099 | Msa0085770:intron | 30.0% |
| ! | TTTCTTAGAATTTGGGTTTG+GGG | + | chr1_2:66066081-66066100 | Msa0085770:intron | 30.0% |
| TGTGTAGACAAGAAAAAACA+AGG | + | chr1_2:66066388-66066407 | Msa0085770:intron | 30.0% | |
| ! | TTAGACTTTCAATTTTGTGC+GGG | + | chr1_2:66066500-66066519 | Msa0085770:intron | 30.0% |
| AGTTAAAATTCTAAATGGCC+TGG | - | chr1_2:66066620-66066639 | None:intergenic | 30.0% | |
| ATCTATAGATTTCTGACACA+TGG | - | chr1_2:66066644-66066663 | None:intergenic | 30.0% | |
| ATGTGTCAGAAATCTATAGA+TGG | + | chr1_2:66066643-66066662 | Msa0085770:intron | 30.0% | |
| CAGAAATCTATAGATGGAAT+TGG | + | chr1_2:66066649-66066668 | Msa0085770:intron | 30.0% | |
| ! | AAGAATGGACATTTGAAATG+TGG | + | chr1_2:66066742-66066761 | Msa0085770:intron | 30.0% |
| ! | AGAATGGACATTTGAAATGT+GGG | + | chr1_2:66066743-66066762 | Msa0085770:intron | 30.0% |
| TATCTTAGAATTTGAGGGTA+GGG | + | chr1_2:66066818-66066837 | Msa0085770:intron | 30.0% | |
| ACTAACTTAATCCCACAAAT+CGG | + | chr1_2:66066842-66066861 | Msa0085770:intron | 30.0% | |
| !!! | ACTGTCCAAACCTTATTTTT+AGG | + | chr1_2:66066879-66066898 | Msa0085770:intron | 30.0% |
| TAGTGCCTAAAAATAAGGTT+TGG | - | chr1_2:66066887-66066906 | None:intergenic | 30.0% | |
| TTAGGTAGTGCCTAAAAATA+AGG | - | chr1_2:66066892-66066911 | None:intergenic | 30.0% | |
| ACCTAAGTCATATCTTTGTT+CGG | + | chr1_2:66066906-66066925 | Msa0085770:intron | 30.0% | |
| ATCAGAAACGAATACTAATG+CGG | + | chr1_2:66066971-66066990 | Msa0085770:intron | 30.0% | |
| ! | CTATCAACACTCCTTTTAAT+TGG | + | chr1_2:66067048-66067067 | Msa0085770:intron | 30.0% |
| ! | ACTAAGTTCTTTCAACCTTT+TGG | + | chr1_2:66067181-66067200 | Msa0085770:CDS | 30.0% |
| ! | CTAAGTTCTTTCAACCTTTT+GGG | + | chr1_2:66067182-66067201 | Msa0085770:CDS | 30.0% |
| !! | TTACGCCTTTGTTATTATAC+TGG | + | chr1_2:66067397-66067416 | Msa0085770:intron | 30.0% |
| ACCATCCAGTATAATAACAA+AGG | - | chr1_2:66067405-66067424 | None:intergenic | 30.0% | |
| ! | TGTTACTAAGCTTTTGTGTT+TGG | + | chr1_2:66067812-66067831 | Msa0085770:intron | 30.0% |
| GAAAAGATGAAAACTTTCCA+GGG | - | chr1_2:66068341-66068360 | None:intergenic | 30.0% | |
| TGTGAAAGAATCCGAAAACA+TGG | + | chr1_2:66064245-66064264 | Msa0085770:five_prime_UTR | 35.0% | |
| GAGTTGTATGGTATGGTATA+TGG | - | chr1_2:66064440-66064459 | None:intergenic | 35.0% | |
| TTGAAAGGAGTTGTATGGTA+TGG | - | chr1_2:66064447-66064466 | None:intergenic | 35.0% | |
| ! | AAGAATGATCTGAGGTTGAA+AGG | - | chr1_2:66064462-66064481 | None:intergenic | 35.0% |
| ! | TTTTCTTAATGCCACCCTTA+TGG | + | chr1_2:66064701-66064720 | Msa0085770:intron | 35.0% |
| TGCATACAGATCCAAGAAAA+GGG | - | chr1_2:66064735-66064754 | None:intergenic | 35.0% | |
| ATGCATACAGATCCAAGAAA+AGG | - | chr1_2:66064736-66064755 | None:intergenic | 35.0% | |
| TTTCTTGGATCTGTATGCAT+TGG | + | chr1_2:66064736-66064755 | Msa0085770:intron | 35.0% | |
| TACACTCAATTTGGATTTGG+TGG | - | chr1_2:66064925-66064944 | None:intergenic | 35.0% | |
| AACAAAGAAGCCTGGTAAAA+TGG | - | chr1_2:66065182-66065201 | None:intergenic | 35.0% | |
| TTTACACAAACAAAGAAGCC+TGG | - | chr1_2:66065190-66065209 | None:intergenic | 35.0% | |
| ACTCCTGCATTATTTGAAAG+TGG | + | chr1_2:66065217-66065236 | Msa0085770:five_prime_UTR | 35.0% | |
| CTGCATTATTTGAAAGTGGA+GGG | + | chr1_2:66065221-66065240 | Msa0085770:five_prime_UTR | 35.0% | |
| TTAACCCTTCAAACTTCACA+GGG | - | chr1_2:66065275-66065294 | None:intergenic | 35.0% | |
| TTTAACCCTTCAAACTTCAC+AGG | - | chr1_2:66065276-66065295 | None:intergenic | 35.0% | |
| TTCAATGTTGTCACATCTGT+TGG | + | chr1_2:66065359-66065378 | Msa0085770:CDS | 35.0% | |
| AGTTTAATGTGGAACTCAGT+TGG | + | chr1_2:66065719-66065738 | Msa0085770:CDS | 35.0% | |
| TACAGGGATCATACTCAATT+TGG | - | chr1_2:66065841-66065860 | None:intergenic | 35.0% | |
| CAAACAAACTTCCAATAAGC+AGG | - | chr1_2:66065865-66065884 | None:intergenic | 35.0% | |
| ! | CTGCTTATTGGAAGTTTGTT+TGG | + | chr1_2:66065863-66065882 | Msa0085770:CDS | 35.0% |
| !! | GAGCATAGGTATTGTTCTTT+TGG | + | chr1_2:66065917-66065936 | Msa0085770:CDS | 35.0% |
| GACGTAAGTGTAAACATGAA+AGG | + | chr1_2:66065963-66065982 | Msa0085770:CDS | 35.0% | |
| !! | CACCTCAAAATTGACTTGTA+AGG | + | chr1_2:66066114-66066133 | Msa0085770:intron | 35.0% |
| ! | CACCTTACAAGTCAATTTTG+AGG | - | chr1_2:66066119-66066138 | None:intergenic | 35.0% |
| GCTCAAACCTTATAAGAACT+TGG | + | chr1_2:66066144-66066163 | Msa0085770:intron | 35.0% | |
| GGTAGTACCAAGTTCTTATA+AGG | - | chr1_2:66066154-66066173 | None:intergenic | 35.0% | |
| AAATGGAGCAAAGTTGAACT+CGG | - | chr1_2:66066176-66066195 | None:intergenic | 35.0% | |
| GAAGGAATTGGGTAAATGAA+GGG | - | chr1_2:66066205-66066224 | None:intergenic | 35.0% | |
| GGAAATCTATGGAAGGAATT+GGG | - | chr1_2:66066216-66066235 | None:intergenic | 35.0% | |
| TGGAAATCTATGGAAGGAAT+TGG | - | chr1_2:66066217-66066236 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGTCTACACAGCA+TGG | - | chr1_2:66066385-66066404 | None:intergenic | 35.0% |
| AAGCATCTAATGTATCTGTG+CGG | + | chr1_2:66066551-66066570 | Msa0085770:intron | 35.0% | |
| AGATGGAATTGGGTAAATAG+AGG | + | chr1_2:66066660-66066679 | Msa0085770:intron | 35.0% | |
| AAGTTGAACTCATACTACCT+AGG | + | chr1_2:66066700-66066719 | Msa0085770:intron | 35.0% | |
| CTATCTTAGAATTTGAGGGT+AGG | + | chr1_2:66066817-66066836 | Msa0085770:intron | 35.0% | |
| ATCTTAGAATTTGAGGGTAG+GGG | + | chr1_2:66066819-66066838 | Msa0085770:intron | 35.0% | |
| ACCGAACAAAGATATGACTT+AGG | - | chr1_2:66066910-66066929 | None:intergenic | 35.0% | |
| TCAGAAACGAATACTAATGC+GGG | + | chr1_2:66066972-66066991 | Msa0085770:intron | 35.0% | |
| !! | TTAAAAGGAGTGTTGATAGC+AGG | - | chr1_2:66067047-66067066 | None:intergenic | 35.0% |
| ! | GCTGGATCACTATTGTTATT+GGG | + | chr1_2:66067224-66067243 | Msa0085770:CDS | 35.0% |
| TCAACCAATAGTCTAGAAGA+GGG | - | chr1_2:66067250-66067269 | None:intergenic | 35.0% | |
| TTATCCAGAACTTACCAAAG+AGG | - | chr1_2:66067309-66067328 | None:intergenic | 35.0% | |
| !! | GCCTTTGTTATTATACTGGA+TGG | + | chr1_2:66067401-66067420 | Msa0085770:intron | 35.0% |
| !! | TAAGCTTTTGTGTTTGGCTT+TGG | + | chr1_2:66067818-66067837 | Msa0085770:intron | 35.0% |
| ATCTGCCAATGCAGATAAAT+TGG | - | chr1_2:66067894-66067913 | None:intergenic | 35.0% | |
| TCTTCATATGTCCAAGTACT+TGG | - | chr1_2:66067933-66067952 | None:intergenic | 35.0% | |
| ! | ACAGCAAGATAGTTGATTCT+AGG | + | chr1_2:66068193-66068212 | Msa0085770:three_prime_UTR | 35.0% |
| ACTAGCTGATATCTCCTTAT+AGG | + | chr1_2:66068309-66068328 | Msa0085770:three_prime_UTR | 35.0% | |
| GGAAAAGATGAAAACTTTCC+AGG | - | chr1_2:66068342-66068361 | None:intergenic | 35.0% | |
| TGAGGTTGAAAGGAGTTGTA+TGG | - | chr1_2:66064452-66064471 | None:intergenic | 40.0% | |
| GTGTTAGGAAGAATGATCTG+AGG | - | chr1_2:66064470-66064489 | None:intergenic | 40.0% | |
| AGGTGTGAATAGAAAAGGTG+GGG | - | chr1_2:66064494-66064513 | None:intergenic | 40.0% | |
| GAGGTGTGAATAGAAAAGGT+GGG | - | chr1_2:66064495-66064514 | None:intergenic | 40.0% | |
| ! | GATGGAGGTGTGAATAGAAA+AGG | - | chr1_2:66064499-66064518 | None:intergenic | 40.0% |
| !! | AAAGGGTGTCAGATCCATAA+GGG | - | chr1_2:66064718-66064737 | None:intergenic | 40.0% |
| !! | AAAAGGGTGTCAGATCCATA+AGG | - | chr1_2:66064719-66064738 | None:intergenic | 40.0% |
| ! | TCATGACCTTCCATTTTACC+AGG | + | chr1_2:66065169-66065188 | Msa0085770:intron | 40.0% |
| AAGAAGCCTGGTAAAATGGA+AGG | - | chr1_2:66065178-66065197 | None:intergenic | 40.0% | |
| CCTCCACTTTCAAATAATGC+AGG | - | chr1_2:66065223-66065242 | None:intergenic | 40.0% | |
| CCTGCATTATTTGAAAGTGG+AGG | + | chr1_2:66065220-66065239 | Msa0085770:five_prime_UTR | 40.0% | |
| TGAAAGTGGAGGGAATGTTA+TGG | + | chr1_2:66065231-66065250 | Msa0085770:five_prime_UTR | 40.0% | |
| AGATCCCTGTGAAGTTTGAA+GGG | + | chr1_2:66065268-66065287 | Msa0085770:five_prime_UTR | 40.0% | |
| ! | GTAAACAAAGCTTTGATGGG+TGG | + | chr1_2:66065392-66065411 | Msa0085770:CDS | 40.0% |
| ! | AAAGCTTTGATGGGTGGTTA+TGG | + | chr1_2:66065398-66065417 | Msa0085770:CDS | 40.0% |
| !! | GGCTGACTTTTTCTCCATTT+TGG | + | chr1_2:66065760-66065779 | Msa0085770:intron | 40.0% |
| !! | TTAACTTCTGGAGGCACTAA+TGG | - | chr1_2:66065787-66065806 | None:intergenic | 40.0% |
| TCAATTTGGCAATCTGCCAA+TGG | - | chr1_2:66065827-66065846 | None:intergenic | 40.0% | |
| CTTCCAATAAGCAGGATACA+GGG | - | chr1_2:66065857-66065876 | None:intergenic | 40.0% | |
| ACTTCCAATAAGCAGGATAC+AGG | - | chr1_2:66065858-66065877 | None:intergenic | 40.0% | |
| AGAGACACAAAACTGAGCAT+AGG | + | chr1_2:66065903-66065922 | Msa0085770:CDS | 40.0% | |
| !! | GGTATTGTTCTTTTGGGAGT+TGG | + | chr1_2:66065924-66065943 | Msa0085770:CDS | 40.0% |
| TGTACTCCACACTGCTATAA+AGG | - | chr1_2:66066000-66066019 | None:intergenic | 40.0% | |
| AATGGAGCAAAGTTGAACTC+GGG | - | chr1_2:66066175-66066194 | None:intergenic | 40.0% | |
| GGAAGGAATTGGGTAAATGA+AGG | - | chr1_2:66066206-66066225 | None:intergenic | 40.0% | |
| ACGTGTTGGAAATCTATGGA+AGG | - | chr1_2:66066223-66066242 | None:intergenic | 40.0% | |
| TTCCATAGATTTCCAACACG+TGG | + | chr1_2:66066222-66066241 | Msa0085770:intron | 40.0% | |
| GAAATTTAACTGCCACGTGT+TGG | - | chr1_2:66066237-66066256 | None:intergenic | 40.0% | |
| GATAGAATCGAACTCTGTTC+AGG | - | chr1_2:66066309-66066328 | None:intergenic | 40.0% | |
| CTCTTCTCCTTGCCTTTATA+TGG | + | chr1_2:66066331-66066350 | Msa0085770:intron | 40.0% | |
| AGCATCTAATGTATCTGTGC+GGG | + | chr1_2:66066552-66066571 | Msa0085770:intron | 40.0% | |
| ATCTCTCTCACGCTTAAGAA+TGG | + | chr1_2:66066727-66066746 | Msa0085770:intron | 40.0% | |
| ! | ATGGACATTTGAAATGTGGG+TGG | + | chr1_2:66066746-66066765 | Msa0085770:intron | 40.0% |
| !! | CATCTTACTAGCCGATTTGT+GGG | - | chr1_2:66066856-66066875 | None:intergenic | 40.0% |
| !! | TCATCTTACTAGCCGATTTG+TGG | - | chr1_2:66066857-66066876 | None:intergenic | 40.0% |
| ! | AGTCATATCTTTGTTCGGTG+TGG | + | chr1_2:66066911-66066930 | Msa0085770:intron | 40.0% |
| !! | GTCATATCTTTGTTCGGTGT+GGG | + | chr1_2:66066912-66066931 | Msa0085770:intron | 40.0% |
| TCTACTCTTTGAGTGTGAGA+GGG | - | chr1_2:66066950-66066969 | None:intergenic | 40.0% | |
| TTCTACTCTTTGAGTGTGAG+AGG | - | chr1_2:66066951-66066970 | None:intergenic | 40.0% | |
| GGCTGGATCACTATTGTTAT+TGG | + | chr1_2:66067223-66067242 | Msa0085770:CDS | 40.0% | |
| GTCAACCAATAGTCTAGAAG+AGG | - | chr1_2:66067251-66067270 | None:intergenic | 40.0% | |
| TGTCATGCACTATTGCAGTT+GGG | + | chr1_2:66067857-66067876 | Msa0085770:CDS | 40.0% | |
| CAATGCAGATAAATTGGCTG+AGG | - | chr1_2:66067888-66067907 | None:intergenic | 40.0% | |
| CTCAGCCAATTTATCTGCAT+TGG | + | chr1_2:66067886-66067905 | Msa0085770:CDS | 40.0% | |
| GCTGTATCTTTCCAAGTACT+TGG | + | chr1_2:66067919-66067938 | Msa0085770:CDS | 40.0% | |
| ! | TGGGATTCTTTTTCTTTGGG+AGG | + | chr1_2:66067971-66067990 | Msa0085770:CDS | 40.0% |
| !! | GGGATTCTTTTTCTTTGGGA+GGG | + | chr1_2:66067972-66067991 | Msa0085770:CDS | 40.0% |
| !! | TTCTTTTTCTTTGGGAGGGA+AGG | + | chr1_2:66067976-66067995 | Msa0085770:CDS | 40.0% |
| GGGATGATAATAGCTGTTGT+TGG | + | chr1_2:66068021-66068040 | Msa0085770:CDS | 40.0% | |
| TAGCTGTTGTTGGAATGATG+TGG | + | chr1_2:66068031-66068050 | Msa0085770:CDS | 40.0% | |
| GTTGTTGGAATGATGTGGTA+TGG | + | chr1_2:66068036-66068055 | Msa0085770:CDS | 40.0% | |
| ! | GACTTTCTGTTTTGCTGGTA+GGG | - | chr1_2:66068110-66068129 | None:intergenic | 40.0% |
| CTACCAGCAAAACAGAAAGT+CGG | + | chr1_2:66068109-66068128 | Msa0085770:CDS | 40.0% | |
| CAGATTGATTGCTTTGCAGC+AGG | - | chr1_2:66064411-66064430 | None:intergenic | 45.0% | |
| TAGAAAAGGTGGGGTGTGTT+AGG | - | chr1_2:66064485-66064504 | None:intergenic | 45.0% | |
| ! | GGAGGTGTGAATAGAAAAGG+TGG | - | chr1_2:66064496-66064515 | None:intergenic | 45.0% |
| TCTATTCACACCTCCATCCA+CGG | + | chr1_2:66064501-66064520 | Msa0085770:five_prime_UTR | 45.0% | |
| GAAATGAAGCTAACCGTGGA+TGG | - | chr1_2:66064517-66064536 | None:intergenic | 45.0% | |
| GAAGGAAATGAAGCTAACCG+TGG | - | chr1_2:66064521-66064540 | None:intergenic | 45.0% | |
| ! | TGGATCTGACACCCTTTTCT+TGG | + | chr1_2:66064721-66064740 | Msa0085770:intron | 45.0% |
| AAGTGGAGGGAATGTTATGG+AGG | + | chr1_2:66065234-66065253 | Msa0085770:five_prime_UTR | 45.0% | |
| GAGATCCCTGTGAAGTTTGA+AGG | + | chr1_2:66065267-66065286 | Msa0085770:five_prime_UTR | 45.0% | |
| TTCTTCTCAGCCTTGCTTGA+AGG | - | chr1_2:66065311-66065330 | None:intergenic | 45.0% | |
| TTCAAGCAAGGCTGAGAAGA+AGG | + | chr1_2:66065310-66065329 | Msa0085770:CDS | 45.0% | |
| ! | GGTGGTTATGGCTTCAGTTT+TGG | + | chr1_2:66065410-66065429 | Msa0085770:CDS | 45.0% |
| CTATCATGACGCTCGTACTA+CGG | + | chr1_2:66065603-66065622 | Msa0085770:CDS | 45.0% | |
| TATCATGACGCTCGTACTAC+GGG | + | chr1_2:66065604-66065623 | Msa0085770:CDS | 45.0% | |
| ACAATGGAAGATGAGATGGC+TGG | - | chr1_2:66065643-66065662 | None:intergenic | 45.0% | |
| TCGGACAATGGAAGATGAGA+TGG | - | chr1_2:66065647-66065666 | None:intergenic | 45.0% | |
| ! | GAGGCACTAATGGACCAAAA+TGG | - | chr1_2:66065777-66065796 | None:intergenic | 45.0% |
| GATCCCTGTATCCTGCTTAT+TGG | + | chr1_2:66065851-66065870 | Msa0085770:CDS | 45.0% | |
| TTGCTGCCTTTATAGCAGTG+TGG | + | chr1_2:66065991-66066010 | Msa0085770:CDS | 45.0% | |
| TGCCACGTGTTGGAAATCTA+TGG | - | chr1_2:66066227-66066246 | None:intergenic | 45.0% | |
| GCATCTAATGTATCTGTGCG+GGG | + | chr1_2:66066553-66066572 | Msa0085770:intron | 45.0% | |
| CATCTAATGTATCTGTGCGG+GGG | + | chr1_2:66066554-66066573 | Msa0085770:intron | 45.0% | |
| GAAACGAATACTAATGCGGG+TGG | + | chr1_2:66066975-66066994 | Msa0085770:intron | 45.0% | |
| TTCTTACGATGCAGCCTCTT+TGG | + | chr1_2:66067292-66067311 | Msa0085770:CDS | 45.0% | |
| CAACTGCAATAGTGCATGAC+AGG | - | chr1_2:66067858-66067877 | None:intergenic | 45.0% | |
| CTGTCATGCACTATTGCAGT+TGG | + | chr1_2:66067856-66067875 | Msa0085770:CDS | 45.0% | |
| GCAGATAAATTGGCTGAGGT+TGG | - | chr1_2:66067884-66067903 | None:intergenic | 45.0% | |
| ! | TGGTAATGCCTCATCAAAGC+CGG | + | chr1_2:66068056-66068075 | Msa0085770:CDS | 45.0% |
| ! | CGACTTTCTGTTTTGCTGGT+AGG | - | chr1_2:66068111-66068130 | None:intergenic | 45.0% |
| !!! | TCACCGACTTTCTGTTTTGC+TGG | - | chr1_2:66068115-66068134 | None:intergenic | 45.0% |
| ! | TTCCAGGGAGCATACCTATA+AGG | - | chr1_2:66068326-66068345 | None:intergenic | 45.0% |
| TGATTGCTTTGCAGCAGGAG+TGG | - | chr1_2:66064406-66064425 | None:intergenic | 50.0% | |
| ATGAAGCTAACCGTGGATGG+AGG | - | chr1_2:66064514-66064533 | None:intergenic | 50.0% | |
| GAACATGGCTCCTTCAAGCA+AGG | + | chr1_2:66065298-66065317 | Msa0085770:exon | 50.0% | |
| GCCTGCAGCTACAACGTTAA+CGG | + | chr1_2:66065559-66065578 | Msa0085770:intron | 50.0% | |
| CCTGCAGCTACAACGTTAAC+GGG | + | chr1_2:66065560-66065579 | Msa0085770:intron | 50.0% | |
| GCGACGTCCATATAAAGGCA+AGG | - | chr1_2:66066341-66066360 | None:intergenic | 50.0% | |
| AGTGCGCGACGTCCATATAA+AGG | - | chr1_2:66066346-66066365 | None:intergenic | 50.0% | |
| TGTGCGGGTAAACATCTGTG+CGG | + | chr1_2:66066515-66066534 | Msa0085770:intron | 50.0% | |
| GCGTGAGAGAGATATGACCT+AGG | - | chr1_2:66066720-66066739 | None:intergenic | 50.0% | |
| AATAGTGATCCAGCCTGTGC+GGG | - | chr1_2:66067218-66067237 | None:intergenic | 50.0% | |
| CAATAGTGATCCAGCCTGTG+CGG | - | chr1_2:66067219-66067238 | None:intergenic | 50.0% | |
| TGGGCCCTCTTCTAGACTAT+TGG | + | chr1_2:66067243-66067262 | Msa0085770:CDS | 50.0% | |
| GCAGCCTCTTTGGTAAGTTC+TGG | + | chr1_2:66067302-66067321 | Msa0085770:intron | 50.0% | |
| GGTAATGCCTCATCAAAGCC+GGG | + | chr1_2:66068057-66068076 | Msa0085770:CDS | 50.0% | |
| CTCCTTATAGGTATGCTCCC+TGG | + | chr1_2:66068321-66068340 | Msa0085770:three_prime_UTR | 50.0% | |
| GGGTGTCAGATCCATAAGGG+TGG | - | chr1_2:66064715-66064734 | None:intergenic | 55.0% | |
| CATCCATGCCGCAGCATCTA+CGG | - | chr1_2:66065339-66065358 | None:intergenic | 55.0% | |
| CCCGTTAACGTTGTAGCTGC+AGG | - | chr1_2:66065563-66065582 | None:intergenic | 55.0% | |
| TCTACACAGCATGGCAGCAG+TGG | - | chr1_2:66066376-66066395 | None:intergenic | 55.0% | |
| ! | CGGGTGCTGTATGTCCCAAA+AGG | - | chr1_2:66067199-66067218 | None:intergenic | 55.0% |
| AATGCCTCATCAAAGCCGGG+TGG | + | chr1_2:66068060-66068079 | Msa0085770:CDS | 55.0% | |
| ! | CTTTCCACCCGGCTTTGATG+AGG | - | chr1_2:66068067-66068086 | None:intergenic | 55.0% |
| CTCATCAAAGCCGGGTGGAA+AGG | + | chr1_2:66068065-66068084 | Msa0085770:CDS | 55.0% | |
| CTCCAACGTTCCTTTCCACC+CGG | - | chr1_2:66068078-66068097 | None:intergenic | 55.0% | |
| GAAGGCAGCCGTAGATGCTG+CGG | + | chr1_2:66065328-66065347 | Msa0085770:CDS | 60.0% | |
| ACGCTCGTACTACGGGTGCT+GGG | + | chr1_2:66065611-66065630 | Msa0085770:CDS | 60.0% | |
| AGCCGGGTGGAAAGGAACGT+TGG | + | chr1_2:66068073-66068092 | Msa0085770:CDS | 60.0% | |
| CAGCCGTAGATGCTGCGGCA+TGG | + | chr1_2:66065333-66065352 | Msa0085770:CDS | 65.0% | |
| GACGCTCGTACTACGGGTGC+TGG | + | chr1_2:66065610-66065629 | Msa0085770:CDS | 65.0% | |
| GGGACATACAGCACCCGCAC+AGG | + | chr1_2:66067202-66067221 | Msa0085770:CDS | 65.0% | |
| CATACAGCACCCGCACAGGC+TGG | + | chr1_2:66067206-66067225 | Msa0085770:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 66064226 | 66068420 | 66064226 | ID=Msa0085770;Name=Msa0085770 |
| chr1_2 | mRNA | 66064226 | 66068420 | 66064226 | ID=Msa0085770-mRNA-1;Parent=Msa0085770;Name=Msa0085770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=408|1|1|1|0.8|0.66|6|286|322 |
| chr1_2 | exon | 66064226 | 66064522 | 66064226 | ID=Msa0085770-mRNA-1:exon:22309;Parent=Msa0085770-mRNA-1 |
| chr1_2 | exon | 66065191 | 66065431 | 66065191 | ID=Msa0085770-mRNA-1:exon:22310;Parent=Msa0085770-mRNA-1 |
| chr1_2 | exon | 66065567 | 66065751 | 66065567 | ID=Msa0085770-mRNA-1:exon:22311;Parent=Msa0085770-mRNA-1 |
| chr1_2 | exon | 66065834 | 66066034 | 66065834 | ID=Msa0085770-mRNA-1:exon:22312;Parent=Msa0085770-mRNA-1 |
| chr1_2 | exon | 66067152 | 66067313 | 66067152 | ID=Msa0085770-mRNA-1:exon:22313;Parent=Msa0085770-mRNA-1 |
| chr1_2 | exon | 66067844 | 66068420 | 66067844 | ID=Msa0085770-mRNA-1:exon:22314;Parent=Msa0085770-mRNA-1 |
| chr1_2 | five_prime_UTR | 66064226 | 66064522 | 66064226 | ID=Msa0085770-mRNA-1:five_prime_utr;Parent=Msa0085770-mRNA-1 |
| chr1_2 | five_prime_UTR | 66065191 | 66065301 | 66065191 | ID=Msa0085770-mRNA-1:five_prime_utr;Parent=Msa0085770-mRNA-1 |
| chr1_2 | CDS | 66065302 | 66065431 | 66065302 | ID=Msa0085770-mRNA-1:cds;Parent=Msa0085770-mRNA-1 |
| chr1_2 | CDS | 66065567 | 66065751 | 66065567 | ID=Msa0085770-mRNA-1:cds;Parent=Msa0085770-mRNA-1 |
| chr1_2 | CDS | 66065834 | 66066034 | 66065834 | ID=Msa0085770-mRNA-1:cds;Parent=Msa0085770-mRNA-1 |
| chr1_2 | CDS | 66067152 | 66067313 | 66067152 | ID=Msa0085770-mRNA-1:cds;Parent=Msa0085770-mRNA-1 |
| chr1_2 | CDS | 66067844 | 66068134 | 66067844 | ID=Msa0085770-mRNA-1:cds;Parent=Msa0085770-mRNA-1 |
| chr1_2 | three_prime_UTR | 66068135 | 66068420 | 66068135 | ID=Msa0085770-mRNA-1:three_prime_utr;Parent=Msa0085770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
