Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038110 | sp|Q9SZ96|URGT5_ARATH | 77.188 | 320 | 50 | 1 | 1 | 297 | 1 | 320 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038110 | Msa0085770 | 0.845721 | 3.403850e-59 | -8.615850e-47 |
| Msa0038110 | Msa0089080 | 0.845687 | 3.476153e-59 | -8.615850e-47 |
| Msa0038110 | Msa0135890 | 0.842985 | 1.850398e-58 | -8.615850e-47 |
| Msa0038110 | Msa0183860 | 0.801965 | 7.021064e-49 | -8.615850e-47 |
| Msa0038110 | Msa0421440 | 0.822622 | 2.146494e-53 | -8.615850e-47 |
| Msa0038110 | Msa0605380 | 0.813708 | 2.232754e-51 | -8.615850e-47 |
| Msa0038110 | Msa1108540 | 0.805798 | 1.121915e-49 | -8.615850e-47 |
| Msa0038110 | Msa1152290 | 0.811456 | 6.938967e-51 | -8.615850e-47 |
| Msa0038110 | Msa1398460 | 0.800903 | 1.158220e-48 | -8.615850e-47 |
| Msa0038110 | Msa1463590 | 0.817800 | 2.733091e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038110 | MtrunA17_Chr1g0201531 | 91.925 | 322 | 1 | 2 | 1 | 299 | 1 | 320 | 0.0 | 585 |
| Msa0038110 | MtrunA17_Chr3g0129401 | 73.209 | 321 | 63 | 1 | 1 | 298 | 1 | 321 | 9.51e-175 | 486 |
| Msa0038110 | MtrunA17_Chr8g0383381 | 68.210 | 324 | 77 | 2 | 1 | 298 | 1 | 324 | 6.34e-161 | 451 |
| Msa0038110 | MtrunA17_Chr1g0157501 | 48.701 | 308 | 124 | 5 | 17 | 296 | 15 | 316 | 3.77e-80 | 246 |
| Msa0038110 | MtrunA17_Chr5g0393381 | 45.625 | 320 | 145 | 6 | 8 | 299 | 7 | 325 | 3.05e-77 | 239 |
| Msa0038110 | MtrunA17_Chr6g0467391 | 36.393 | 305 | 170 | 2 | 17 | 298 | 14 | 317 | 1.34e-53 | 177 |
| Msa0038110 | MtrunA17_Chr6g0467371 | 36.393 | 305 | 170 | 2 | 17 | 298 | 14 | 317 | 1.34e-53 | 177 |
| Msa0038110 | MtrunA17_Chr2g0326791 | 36.860 | 293 | 161 | 2 | 17 | 286 | 14 | 305 | 3.30e-53 | 177 |
| Msa0038110 | MtrunA17_Chr4g0028931 | 35.495 | 293 | 165 | 2 | 16 | 285 | 13 | 304 | 6.48e-50 | 168 |
| Msa0038110 | MtrunA17_Chr3g0128951 | 34.962 | 266 | 149 | 2 | 32 | 274 | 29 | 293 | 3.07e-44 | 154 |
| Msa0038110 | MtrunA17_Chr3g0128961 | 31.429 | 315 | 167 | 3 | 32 | 298 | 29 | 342 | 3.30e-42 | 149 |
| Msa0038110 | MtrunA17_Chr2g0298931 | 26.708 | 322 | 201 | 5 | 4 | 295 | 45 | 361 | 9.22e-22 | 94.0 |
| Msa0038110 | MtrunA17_Chr5g0446851 | 26.061 | 330 | 198 | 7 | 4 | 297 | 46 | 365 | 7.63e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038110 | AT4G09810.1 | 77.188 | 320 | 50 | 1 | 1 | 297 | 1 | 320 | 0.0 | 515 |
| Msa0038110 | AT1G34020.2 | 78.438 | 320 | 46 | 1 | 1 | 297 | 1 | 320 | 1.24e-177 | 494 |
| Msa0038110 | AT1G34020.1 | 78.438 | 320 | 46 | 1 | 1 | 297 | 1 | 320 | 1.24e-177 | 494 |
| Msa0038110 | AT1G34020.3 | 78.438 | 320 | 46 | 1 | 1 | 297 | 1 | 320 | 1.24e-177 | 494 |
| Msa0038110 | AT4G39390.3 | 72.727 | 319 | 64 | 1 | 2 | 297 | 3 | 321 | 1.27e-163 | 458 |
| Msa0038110 | AT4G39390.1 | 72.727 | 319 | 64 | 1 | 2 | 297 | 7 | 325 | 1.37e-163 | 458 |
| Msa0038110 | AT4G39390.2 | 72.727 | 319 | 64 | 1 | 2 | 297 | 7 | 325 | 1.37e-163 | 458 |
| Msa0038110 | AT4G09810.2 | 76.046 | 263 | 40 | 1 | 58 | 297 | 1 | 263 | 3.14e-149 | 419 |
| Msa0038110 | AT4G09810.3 | 75.330 | 227 | 33 | 1 | 1 | 204 | 1 | 227 | 6.68e-123 | 351 |
| Msa0038110 | AT5G42420.1 | 46.980 | 298 | 132 | 3 | 2 | 274 | 3 | 299 | 2.12e-83 | 255 |
| Msa0038110 | AT1G21070.1 | 46.106 | 321 | 144 | 5 | 1 | 295 | 1 | 318 | 1.80e-82 | 253 |
| Msa0038110 | AT1G76670.2 | 46.984 | 315 | 131 | 5 | 6 | 285 | 5 | 318 | 3.00e-81 | 249 |
| Msa0038110 | AT1G76670.1 | 46.984 | 315 | 131 | 5 | 6 | 285 | 5 | 318 | 3.00e-81 | 249 |
| Msa0038110 | AT5G42420.2 | 41.455 | 275 | 114 | 3 | 2 | 274 | 3 | 232 | 1.30e-64 | 205 |
| Msa0038110 | AT1G06890.2 | 34.694 | 294 | 164 | 4 | 32 | 299 | 29 | 320 | 1.03e-47 | 163 |
| Msa0038110 | AT1G06890.1 | 34.694 | 294 | 164 | 4 | 32 | 299 | 29 | 320 | 1.03e-47 | 163 |
| Msa0038110 | AT1G06890.4 | 34.694 | 294 | 164 | 4 | 32 | 299 | 29 | 320 | 1.18e-47 | 163 |
| Msa0038110 | AT1G06890.3 | 34.694 | 294 | 164 | 4 | 32 | 299 | 29 | 320 | 1.40e-47 | 163 |
| Msa0038110 | AT2G30460.1 | 36.466 | 266 | 145 | 2 | 32 | 274 | 29 | 293 | 6.31e-47 | 161 |
| Msa0038110 | AT2G30460.2 | 36.466 | 266 | 145 | 2 | 32 | 274 | 29 | 293 | 6.31e-47 | 161 |
| Msa0038110 | AT2G28315.1 | 33.333 | 318 | 176 | 4 | 17 | 299 | 14 | 330 | 1.21e-46 | 160 |
| Msa0038110 | AT2G28315.2 | 33.898 | 295 | 171 | 2 | 17 | 288 | 14 | 307 | 2.20e-46 | 159 |
| Msa0038110 | AT2G30460.3 | 35.294 | 255 | 141 | 2 | 44 | 275 | 20 | 273 | 1.92e-41 | 146 |
| Msa0038110 | AT2G30460.6 | 35.294 | 255 | 141 | 2 | 44 | 275 | 20 | 273 | 1.92e-41 | 146 |
| Msa0038110 | AT2G30460.5 | 35.294 | 255 | 141 | 2 | 44 | 275 | 20 | 273 | 1.92e-41 | 146 |
| Msa0038110 | AT2G30460.4 | 32.083 | 240 | 123 | 3 | 32 | 231 | 29 | 268 | 5.61e-25 | 102 |
| Msa0038110 | AT5G55950.4 | 29.787 | 282 | 166 | 5 | 20 | 274 | 3 | 279 | 2.16e-21 | 92.8 |
| Msa0038110 | AT5G55950.1 | 29.787 | 282 | 166 | 5 | 20 | 274 | 63 | 339 | 2.28e-21 | 93.6 |
| Msa0038110 | AT5G55950.2 | 32.124 | 193 | 104 | 3 | 20 | 185 | 63 | 255 | 1.20e-15 | 76.3 |
| Msa0038110 | AT5G55950.3 | 28.195 | 266 | 159 | 5 | 36 | 274 | 1 | 261 | 1.49e-15 | 76.3 |
| Msa0038110 | AT5G57100.1 | 24.172 | 302 | 193 | 6 | 3 | 274 | 51 | 346 | 2.28e-14 | 73.2 |
| Msa0038110 | AT5G57100.3 | 30.519 | 154 | 99 | 3 | 3 | 149 | 51 | 203 | 4.13e-12 | 65.9 |
| Msa0038110 | AT5G57100.2 | 33.333 | 135 | 84 | 2 | 20 | 149 | 70 | 203 | 4.87e-12 | 65.9 |
Find 100 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATCTTCATGTAGTTAT+AGG | 0.189055 | 1_1:-67373600 | Msa0038110:CDS |
| GAGCATAGGTATTGTTCTTT+TGG | 0.204855 | 1_1:-67375678 | Msa0038110:CDS |
| ACTAAGTTCTTTCAACCTTT+TGG | 0.208492 | 1_1:-67374419 | Msa0038110:CDS |
| GGCTGGATCACTATTGTTAT+TGG | 0.217609 | 1_1:-67374377 | Msa0038110:CDS |
| TTAAATTTGATTTCTTGTTT+TGG | 0.254326 | 1_1:-67373316 | Msa0038110:three_prime_UTR |
| TATTTGAAATTAAACCTTAC+TGG | 0.279006 | 1_1:-67373370 | Msa0038110:three_prime_UTR |
| CTGCTTATTGGAAGTTTGTT+TGG | 0.283114 | 1_1:-67375732 | Msa0038110:CDS |
| ATCTGCCAATGCAGATAAAT+TGG | 0.283951 | 1_1:+67373709 | None:intergenic |
| TTCTTCTCAGCTTTGCTTGA+AGG | 0.285443 | 1_1:+67376287 | None:intergenic |
| TTTGCTAACTTCTCTATTGT+TGG | 0.285797 | 1_1:-67375909 | Msa0038110:CDS |
| TGGGCCCTCTTCTAGACTAT+TGG | 0.285839 | 1_1:-67374357 | Msa0038110:CDS |
| GATCCCTGTATCCTGCTTAT+TGG | 0.289081 | 1_1:-67375744 | Msa0038110:CDS |
| GGTGGTTATGGCTTCAGTTT+TGG | 0.294456 | 1_1:-67376185 | Msa0038110:intron |
| TTCTTACGATGCAGCCTCTT+TGG | 0.298652 | 1_1:-67374308 | Msa0038110:intron |
| CATTGTAAACAAAGCTTTGA+TGG | 0.302927 | 1_1:-67376207 | Msa0038110:CDS |
| ACTAGCTGATATCTCCTTAT+AGG | 0.304873 | 1_1:-67373291 | Msa0038110:three_prime_UTR |
| TACAGGGATCATACTCAATT+TGG | 0.310691 | 1_1:+67375757 | None:intergenic |
| GGAAAAGATGAAAACTTTCC+AGG | 0.329181 | 1_1:+67373261 | None:intergenic |
| CTATCATGACGCTCGTACTA+CGG | 0.348850 | 1_1:-67375992 | Msa0038110:CDS |
| AAAGCTTTGATGGGTGGTTA+TGG | 0.350738 | 1_1:-67376197 | Msa0038110:CDS |
| TTAATCTTCATGTAGTTATA+GGG | 0.355141 | 1_1:-67373599 | Msa0038110:CDS |
| TCTTCATATGTCCAAGTACT+TGG | 0.370729 | 1_1:+67373670 | None:intergenic |
| ACAGCAAGATAGTTGATTCT+AGG | 0.373453 | 1_1:-67373407 | Msa0038110:three_prime_UTR |
| GCTGGATCACTATTGTTATT+GGG | 0.390290 | 1_1:-67374376 | Msa0038110:CDS |
| TTCCAGGGAGCATACCTATA+AGG | 0.395801 | 1_1:+67373277 | None:intergenic |
| AGATTGTTGTTAATTGTGTT+TGG | 0.399409 | 1_1:-67377284 | Msa0038110:five_prime_UTR |
| GAGATCCGTGTGAAGTTTGA+AGG | 0.406091 | 1_1:-67376328 | Msa0038110:five_prime_UTR |
| ACTTCCAATAAGCAGGATAC+AGG | 0.411849 | 1_1:+67375740 | None:intergenic |
| CCTGCAGCTACAACGTTAAC+AGG | 0.415446 | 1_1:-67376035 | Msa0038110:intron |
| TGAAAGTGGAGGGAATGTTA+TGG | 0.419562 | 1_1:-67376364 | Msa0038110:five_prime_UTR |
| AAAGAAAGGTGGGGTGTGTT+GGG | 0.420540 | 1_1:+67377172 | None:intergenic |
| TAAAATAATTAAAACCAGTA+AGG | 0.425675 | 1_1:+67373356 | None:intergenic |
| AAAAGAAAGGTGGGGTGTGT+TGG | 0.426524 | 1_1:+67377171 | None:intergenic |
| GCTGTATCTTTCCAAGTACT+TGG | 0.427096 | 1_1:-67373681 | Msa0038110:CDS |
| GACGCTCGTACTACGGGTGC+TGG | 0.431582 | 1_1:-67375985 | Msa0038110:CDS |
| CTCAGCCAATTTATCTGCAT+TGG | 0.439399 | 1_1:-67373714 | Msa0038110:CDS |
| TTCAATGTTGTCACATCTGT+TGG | 0.444323 | 1_1:-67376236 | Msa0038110:CDS |
| ACATTATTCACTCATTATGA+TGG | 0.450099 | 1_1:-67373458 | Msa0038110:three_prime_UTR |
| CATCCATGCCGCAGCATCTA+CGG | 0.452040 | 1_1:+67376259 | None:intergenic |
| GATTGTTGTTAATTGTGTTT+GGG | 0.453752 | 1_1:-67377283 | Msa0038110:five_prime_UTR |
| TTGCTTATTTGCTTTGCAGC+AGG | 0.454252 | 1_1:+67377242 | None:intergenic |
| TTCAAGCAAAGCTGAGAAGA+AGG | 0.460573 | 1_1:-67376285 | Msa0038110:CDS |
| TATCATGACGCTCGTACTAC+GGG | 0.465542 | 1_1:-67375991 | Msa0038110:CDS |
| AGTTTAATGTGGAACTCAGT+TGG | 0.467237 | 1_1:-67375876 | Msa0038110:CDS |
| TGAGATTGAAAGGAGTTGTA+TGG | 0.469487 | 1_1:+67377205 | None:intergenic |
| GGGATGATAATAGCTGTTGT+TGG | 0.500626 | 1_1:-67373579 | Msa0038110:CDS |
| AAGAATGATCTGAGATTGAA+AGG | 0.502167 | 1_1:+67377195 | None:intergenic |
| CTCCAACGTTCCTTTCCACC+CGG | 0.506064 | 1_1:+67373525 | None:intergenic |
| CAACTGCAATAGTGCATGAC+AGG | 0.512316 | 1_1:+67373745 | None:intergenic |
| CAAACAAACTTCCAATAAGC+AGG | 0.516695 | 1_1:+67375733 | None:intergenic |
| CTCATCAAAGCCGGGTGGAA+AGG | 0.518918 | 1_1:-67373535 | Msa0038110:CDS |
| GTCAACCAATAGTCTAGAAG+AGG | 0.519084 | 1_1:+67374352 | None:intergenic |
| TGGTAATGCCTCATCAAAGC+CGG | 0.520386 | 1_1:-67373544 | Msa0038110:CDS |
| CATACAGCACCCGCACAGGC+TGG | 0.523624 | 1_1:-67374394 | Msa0038110:CDS |
| ACTCCTGCATTATTTGAAAG+TGG | 0.523920 | 1_1:-67376378 | Msa0038110:five_prime_UTR |
| CCTCCACTTTCAAATAATGC+AGG | 0.524868 | 1_1:+67376375 | None:intergenic |
| TATTTGCTTTGCAGCAGGAG+TGG | 0.527662 | 1_1:+67377247 | None:intergenic |
| CTTTCCACCCGGCTTTGATG+AGG | 0.529809 | 1_1:+67373536 | None:intergenic |
| ATTGTAAACAAAGCTTTGAT+GGG | 0.537492 | 1_1:-67376206 | Msa0038110:CDS |
| CTGTCATGCACTATTGCAGT+TGG | 0.539337 | 1_1:-67373744 | Msa0038110:CDS |
| CTCCTTATAGGTATGCTCCC+TGG | 0.542778 | 1_1:-67373279 | Msa0038110:three_prime_UTR |
| CAGCCGTAGATGCTGCGGCA+TGG | 0.544538 | 1_1:-67376262 | Msa0038110:CDS |
| AAAAGGAAGCTAACCGTGGA+TGG | 0.545489 | 1_1:+67377136 | None:intergenic |
| CTGCATTATTTGAAAGTGGA+GGG | 0.545733 | 1_1:-67376374 | Msa0038110:five_prime_UTR |
| AATTTAAAGAATTACAAATG+AGG | 0.546496 | 1_1:+67373332 | None:intergenic |
| AATAGTGATCCAGCCTGTGC+GGG | 0.549143 | 1_1:+67374385 | None:intergenic |
| TGTCATGCACTATTGCAGTT+GGG | 0.557390 | 1_1:-67373743 | Msa0038110:CDS |
| CGTGAAAGAATCCGAAAACA+TGG | 0.562020 | 1_1:-67377472 | Msa0038110:five_prime_UTR |
| GCAGATAAATTGGCTGAGGT+TGG | 0.563030 | 1_1:+67373719 | None:intergenic |
| TGTGAATAGAAAAGAAAGGT+GGG | 0.563376 | 1_1:+67377162 | None:intergenic |
| TCTATTCACACCTCCATCCA+CGG | 0.564926 | 1_1:-67377149 | Msa0038110:intron |
| GTAAACAAAGCTTTGATGGG+TGG | 0.567414 | 1_1:-67376203 | Msa0038110:CDS |
| CGGGTGCTGTATGTCCCAAA+AGG | 0.569410 | 1_1:+67374404 | None:intergenic |
| GAAAAGATGAAAACTTTCCA+GGG | 0.570089 | 1_1:+67373262 | None:intergenic |
| AGTATGTTCATTATCTTCAA+CGG | 0.576478 | 1_1:-67374450 | Msa0038110:CDS |
| GGTAATGCCTCATCAAAGCC+GGG | 0.576676 | 1_1:-67373543 | Msa0038110:CDS |
| CTTCCAATAAGCAGGATACA+GGG | 0.577864 | 1_1:+67375741 | None:intergenic |
| TCGGACAATGGAAGATGAGA+TGG | 0.578480 | 1_1:+67375951 | None:intergenic |
| CCTGCATTATTTGAAAGTGG+AGG | 0.582054 | 1_1:-67376375 | Msa0038110:five_prime_UTR |
| TTAATCCTTCAAACTTCACA+CGG | 0.586224 | 1_1:+67376323 | None:intergenic |
| GGGACATACAGCACCCGCAC+AGG | 0.586372 | 1_1:-67374398 | Msa0038110:CDS |
| ACAATGGAAGATGAGATGGC+TGG | 0.591393 | 1_1:+67375955 | None:intergenic |
| GTGTGAATAGAAAAGAAAGG+TGG | 0.595894 | 1_1:+67377161 | None:intergenic |
| ACGCTCGTACTACGGGTGCT+GGG | 0.598648 | 1_1:-67375984 | Msa0038110:CDS |
| CAATAGTGATCCAGCCTGTG+CGG | 0.599047 | 1_1:+67374384 | None:intergenic |
| AAGTGGAGGGAATGTTATGG+AGG | 0.604217 | 1_1:-67376361 | Msa0038110:five_prime_UTR |
| GTATGAATGTCAGTTTAATG+TGG | 0.608535 | 1_1:-67375887 | Msa0038110:CDS |
| GTTGTTGGAATGATGTGGTA+TGG | 0.618331 | 1_1:-67373564 | Msa0038110:CDS |
| AGAGACACAAAACTGAGCAT+AGG | 0.624573 | 1_1:-67375692 | Msa0038110:CDS |
| GAAGGCAGCCGTAGATGCTG+CGG | 0.628788 | 1_1:-67376267 | Msa0038110:CDS |
| GAGGTGTGAATAGAAAAGAA+AGG | 0.629980 | 1_1:+67377158 | None:intergenic |
| AGCCGGGTGGAAAGGAACGT+TGG | 0.631506 | 1_1:-67373527 | Msa0038110:CDS |
| TTATCCAGAACTTACCAAAG+AGG | 0.632878 | 1_1:+67374294 | None:intergenic |
| TCAACCAATAGTCTAGAAGA+GGG | 0.636120 | 1_1:+67374353 | None:intergenic |
| CAATGCAGATAAATTGGCTG+AGG | 0.640425 | 1_1:+67373715 | None:intergenic |
| CTACCAGCAAAACAGAAAGT+CGG | 0.648557 | 1_1:-67373491 | Msa0038110:CDS |
| AGGAAGCTAACCGTGGATGG+AGG | 0.649164 | 1_1:+67377139 | None:intergenic |
| GTGAATAGAAAAGAAAGGTG+GGG | 0.716134 | 1_1:+67377163 | None:intergenic |
| AATGCCTCATCAAAGCCGGG+TGG | 0.721446 | 1_1:-67373540 | Msa0038110:CDS |
| TAGCTGTTGTTGGAATGATG+TGG | 0.725934 | 1_1:-67373569 | Msa0038110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTGAATTTTTGAAT+TGG | - | chr1_1:67373903-67373922 | Msa0038110:intron | 10.0% |
| !! | AAAAGTAAATAAACAATTTA+AGG | + | chr1_1:67375576-67375595 | None:intergenic | 10.0% |
| !! | AATATAAATTTGATATAACA+AGG | + | chr1_1:67376524-67376543 | None:intergenic | 10.0% |
| !!! | ATTTTCTTCTTCTTTATTTT+CGG | - | chr1_1:67373259-67373278 | Msa0038110:three_prime_UTR | 15.0% |
| !!! | AGTTTTATGATATATTAACT+GGG | + | chr1_1:67374591-67374610 | None:intergenic | 15.0% |
| !!! | AAGTTTTATGATATATTAAC+TGG | + | chr1_1:67374592-67374611 | None:intergenic | 15.0% |
| !! | TAAAAGAAAATCATACTTAA+AGG | + | chr1_1:67374635-67374654 | None:intergenic | 15.0% |
| !!! | TTTTATTATATCTTGAACAT+TGG | - | chr1_1:67376685-67376704 | Msa0038110:intron | 15.0% |
| !! | GCATATAATTATATTCTAAA+CGG | + | chr1_1:67376749-67376768 | None:intergenic | 15.0% |
| !! | TAGAATATAATTATATGCTT+AGG | - | chr1_1:67376751-67376770 | Msa0038110:intron | 15.0% |
| !!! | ACAATACTTGTTTTAATAAT+GGG | - | chr1_1:67377045-67377064 | Msa0038110:intron | 15.0% |
| !! | TAAAATAATTAAAACCAGTA+AGG | + | chr1_1:67377340-67377359 | None:intergenic | 15.0% |
| !! | AATTTAAAGAATTACAAATG+AGG | + | chr1_1:67377364-67377383 | None:intergenic | 15.0% |
| !!! | TTAAATTTGATTTCTTGTTT+TGG | - | chr1_1:67377377-67377396 | Msa0038110:intron | 15.0% |
| !!! | AAATAAATTCATTTTGATCA+TGG | + | chr1_1:67377456-67377475 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGAAAGAGAAA+AGG | + | chr1_1:67373577-67373596 | None:intergenic | 20.0% |
| !! | ATCAATCCAAAAAATGAAAA+AGG | + | chr1_1:67373640-67373659 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTGAATTGGTTT+AGG | - | chr1_1:67373909-67373928 | Msa0038110:intron | 20.0% |
| !! | AAAAACTATTGTATTCAGAT+AGG | + | chr1_1:67374168-67374187 | None:intergenic | 20.0% |
| !!! | GAAAACAAATTTTAGAAGTT+CGG | + | chr1_1:67374764-67374783 | None:intergenic | 20.0% |
| !!! | AAAGAAACAAATTTAACTTC+TGG | + | chr1_1:67374897-67374916 | None:intergenic | 20.0% |
| !!! | TGTATTTGTTTCTTAGAATT+TGG | - | chr1_1:67375171-67375190 | Msa0038110:intron | 20.0% |
| !!! | GTATTTGTTTCTTAGAATTT+GGG | - | chr1_1:67375172-67375191 | Msa0038110:intron | 20.0% |
| !! | ATGACAGTTAAAATTCTAAA+TGG | + | chr1_1:67375723-67375742 | None:intergenic | 20.0% |
| !! | AAATTAAACGTATAGATACT+TGG | - | chr1_1:67376443-67376462 | Msa0038110:intron | 20.0% |
| !! | TATATTAATTTAATGCAAGC+AGG | + | chr1_1:67376622-67376641 | None:intergenic | 20.0% |
| !! | TATAGAACAAAATTGAGAAT+TGG | - | chr1_1:67376841-67376860 | Msa0038110:intron | 20.0% |
| !!! | GACAATACTTGTTTTAATAA+TGG | - | chr1_1:67377044-67377063 | Msa0038110:intron | 20.0% |
| !! | TTAATCTTCATGTAGTTATA+GGG | - | chr1_1:67377094-67377113 | Msa0038110:intron | 20.0% |
| !!! | TATTTGAAATTAAACCTTAC+TGG | - | chr1_1:67377323-67377342 | Msa0038110:five_prime_UTR | 20.0% |
| !! | TAGTTAACTAACCATGTTTT+CGG | + | chr1_1:67373235-67373254 | None:intergenic | 25.0% |
| !! | AGATTGTTGTTAATTGTGTT+TGG | - | chr1_1:67373409-67373428 | Msa0038110:three_prime_UTR | 25.0% |
| !! | GATTGTTGTTAATTGTGTTT+GGG | - | chr1_1:67373410-67373429 | Msa0038110:three_prime_UTR | 25.0% |
| !!! | ACTTCTCCTTTTTCATTTTT+TGG | - | chr1_1:67373631-67373650 | Msa0038110:CDS | 25.0% |
| !! | TGTTTTTCTCTTCTTGAAAT+GGG | + | chr1_1:67373682-67373701 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCTTCTTGAAA+TGG | + | chr1_1:67373683-67373702 | None:intergenic | 25.0% |
| ! | CAAGAAGAGAAAAACAAAAA+TGG | - | chr1_1:67373686-67373705 | Msa0038110:CDS | 25.0% |
| ! | TTGAAGGATTAAAAAGAACA+TGG | - | chr1_1:67374381-67374400 | Msa0038110:CDS | 25.0% |
| !! | ATTGTAAACAAAGCTTTGAT+GGG | - | chr1_1:67374487-67374506 | Msa0038110:intron | 25.0% |
| ! | TATCATTAAGAAACAGGTAA+AGG | + | chr1_1:67374540-67374559 | None:intergenic | 25.0% |
| ! | CAGAAATATCATTAAGAAAC+AGG | + | chr1_1:67374546-67374565 | None:intergenic | 25.0% |
| ! | AAGAAAATCATACTTAAAGG+AGG | + | chr1_1:67374632-67374651 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTTTTTTGACCAT+TGG | - | chr1_1:67374906-67374925 | Msa0038110:intron | 25.0% |
| !! | TAAATGAAGGGTATACTAAA+TGG | + | chr1_1:67375291-67375310 | None:intergenic | 25.0% |
| !! | ACGTGATTCAATTTTTAATG+CGG | + | chr1_1:67375366-67375385 | None:intergenic | 25.0% |
| !! | TTTAGACTTTCAATTTTGTG+CGG | - | chr1_1:67375597-67375616 | Msa0038110:intron | 25.0% |
| ! | GGATTAAAAATTAGATGCTT+GGG | + | chr1_1:67375697-67375716 | None:intergenic | 25.0% |
| !! | CAAGCATCTAATTTTTAATC+CGG | - | chr1_1:67375696-67375715 | Msa0038110:CDS | 25.0% |
| !! | AAGCATCTAATTTTTAATCC+GGG | - | chr1_1:67375697-67375716 | Msa0038110:CDS | 25.0% |
| ! | AGAAATCTATAGATGGAATT+GGG | - | chr1_1:67375748-67375767 | Msa0038110:CDS | 25.0% |
| ! | TGATACTATCTTAGAATTTG+AGG | - | chr1_1:67375905-67375924 | Msa0038110:CDS | 25.0% |
| ! | GATACTATCTTAGAATTTGA+GGG | - | chr1_1:67375906-67375925 | Msa0038110:CDS | 25.0% |
| ! | AGTATGTTCATTATCTTCAA+CGG | - | chr1_1:67376243-67376262 | Msa0038110:CDS | 25.0% |
| ! | AATTATCTACACATATTGGA+AGG | + | chr1_1:67376554-67376573 | None:intergenic | 25.0% |
| ! | ATGCAATTATCTACACATAT+TGG | + | chr1_1:67376558-67376577 | None:intergenic | 25.0% |
| ! | AATCTACTTATCAACATACT+TGG | - | chr1_1:67376641-67376660 | Msa0038110:intron | 25.0% |
| ! | ATTATATCTTGAACATTGGT+AGG | - | chr1_1:67376689-67376708 | Msa0038110:intron | 25.0% |
| ! | GTATGTGTAATGAATTTCAT+AGG | - | chr1_1:67376719-67376738 | Msa0038110:intron | 25.0% |
| ! | CATCATTGAAATGTCAAATT+CGG | + | chr1_1:67376807-67376826 | None:intergenic | 25.0% |
| !! | ACATTTCAATGATGATGAAA+CGG | - | chr1_1:67376813-67376832 | Msa0038110:intron | 25.0% |
| !!! | ATAATGGGATTCTTTTTCTT+TGG | - | chr1_1:67377060-67377079 | Msa0038110:intron | 25.0% |
| !! | TAATGGGATTCTTTTTCTTT+GGG | - | chr1_1:67377061-67377080 | Msa0038110:intron | 25.0% |
| ! | CTTAATCTTCATGTAGTTAT+AGG | - | chr1_1:67377093-67377112 | Msa0038110:intron | 25.0% |
| ! | ACATTATTCACTCATTATGA+TGG | - | chr1_1:67377235-67377254 | Msa0038110:five_prime_UTR | 25.0% |
| ! | AAGAATGATCTGAGATTGAA+AGG | + | chr1_1:67373501-67373520 | None:intergenic | 30.0% |
| TGTGAATAGAAAAGAAAGGT+GGG | + | chr1_1:67373534-67373553 | None:intergenic | 30.0% | |
| GACAAATAAAAAGACTTGAC+TGG | + | chr1_1:67374134-67374153 | None:intergenic | 30.0% | |
| TTAATCCTTCAAACTTCACA+CGG | + | chr1_1:67374373-67374392 | None:intergenic | 30.0% | |
| ! | CATTGTAAACAAAGCTTTGA+TGG | - | chr1_1:67374486-67374505 | Msa0038110:intron | 30.0% |
| !! | AATTTTAGAAGTTCGGACAA+TGG | + | chr1_1:67374757-67374776 | None:intergenic | 30.0% |
| TTTGCTAACTTCTCTATTGT+TGG | - | chr1_1:67374784-67374803 | Msa0038110:intron | 30.0% | |
| GTATGAATGTCAGTTTAATG+TGG | - | chr1_1:67374806-67374825 | Msa0038110:intron | 30.0% | |
| TGGATTCTATCAAGTAAGTT+TGG | - | chr1_1:67374837-67374856 | Msa0038110:intron | 30.0% | |
| ! | GAAACAAATTTAACTTCTGG+AGG | + | chr1_1:67374894-67374913 | None:intergenic | 30.0% |
| !! | AGCATAGGTATTGTTCTTTT+GGG | - | chr1_1:67375016-67375035 | Msa0038110:intron | 30.0% |
| !!! | AAACATGAAAGGTTTTGTTG+CGG | - | chr1_1:67375072-67375091 | Msa0038110:intron | 30.0% |
| ! | TGTTTCTTAGAATTTGGGTT+TGG | - | chr1_1:67375177-67375196 | Msa0038110:intron | 30.0% |
| ! | GTTTCTTAGAATTTGGGTTT+GGG | - | chr1_1:67375178-67375197 | Msa0038110:intron | 30.0% |
| ! | TTTCTTAGAATTTGGGTTTG+GGG | - | chr1_1:67375179-67375198 | Msa0038110:intron | 30.0% |
| ! | CGTGATTCAATTTTTAATGC+GGG | + | chr1_1:67375365-67375384 | None:intergenic | 30.0% |
| TGTGTAGACAAGAAAAAACA+AGG | - | chr1_1:67375486-67375505 | Msa0038110:intron | 30.0% | |
| ! | TTAGACTTTCAATTTTGTGC+GGG | - | chr1_1:67375598-67375617 | Msa0038110:intron | 30.0% |
| CGGATTAAAAATTAGATGCT+TGG | + | chr1_1:67375698-67375717 | None:intergenic | 30.0% | |
| AGTTAAAATTCTAAATGGCC+CGG | + | chr1_1:67375718-67375737 | None:intergenic | 30.0% | |
| ATGTGTCAGAAATCTATAGA+TGG | - | chr1_1:67375741-67375760 | Msa0038110:CDS | 30.0% | |
| CAGAAATCTATAGATGGAAT+TGG | - | chr1_1:67375747-67375766 | Msa0038110:CDS | 30.0% | |
| ! | AAGAATGGACATTTGAAATG+TGG | - | chr1_1:67375835-67375854 | Msa0038110:intron | 30.0% |
| ! | AGAATGGACATTTGAAATGT+GGG | - | chr1_1:67375836-67375855 | Msa0038110:intron | 30.0% |
| TATCTTAGAATTTGAGGGTA+GGG | - | chr1_1:67375911-67375930 | Msa0038110:CDS | 30.0% | |
| ACTAACTTAATCCCACAAAT+CGG | - | chr1_1:67375935-67375954 | Msa0038110:CDS | 30.0% | |
| !!! | ACTGTCCAAACCTTATTTTT+AGG | - | chr1_1:67375972-67375991 | Msa0038110:CDS | 30.0% |
| TAGTGCCTAAAAATAAGGTT+TGG | + | chr1_1:67375980-67375999 | None:intergenic | 30.0% | |
| TTAGGTAGTGCCTAAAAATA+AGG | + | chr1_1:67375985-67376004 | None:intergenic | 30.0% | |
| ACCTAAGTCATATCTTTGTT+TGG | - | chr1_1:67375999-67376018 | Msa0038110:CDS | 30.0% | |
| ACCAAACAAAGATATGACTT+AGG | + | chr1_1:67376003-67376022 | None:intergenic | 30.0% | |
| ATCAGAAACGAATACTAATG+CGG | - | chr1_1:67376063-67376082 | Msa0038110:intron | 30.0% | |
| ! | CTATCAACACTCCTTTTAAT+TGG | - | chr1_1:67376140-67376159 | Msa0038110:intron | 30.0% |
| !! | CACTCCTTTTAATTGGTATA+TGG | - | chr1_1:67376147-67376166 | Msa0038110:intron | 30.0% |
| GACACCATATACCAATTAAA+AGG | + | chr1_1:67376154-67376173 | None:intergenic | 30.0% | |
| TCCGTAGCATTCAATATTAA+TGG | - | chr1_1:67376199-67376218 | Msa0038110:CDS | 30.0% | |
| CCCATTAATATTGAATGCTA+CGG | + | chr1_1:67376203-67376222 | None:intergenic | 30.0% | |
| CCGTAGCATTCAATATTAAT+GGG | - | chr1_1:67376200-67376219 | Msa0038110:CDS | 30.0% | |
| ! | ACTAAGTTCTTTCAACCTTT+TGG | - | chr1_1:67376274-67376293 | Msa0038110:CDS | 30.0% |
| ! | CTAAGTTCTTTCAACCTTTT+GGG | - | chr1_1:67376275-67376294 | Msa0038110:CDS | 30.0% |
| !! | TTACGCCTTTGTTATTATAC+TGG | - | chr1_1:67376490-67376509 | Msa0038110:intron | 30.0% |
| ACCATCCAGTATAATAACAA+AGG | + | chr1_1:67376498-67376517 | None:intergenic | 30.0% | |
| ! | TGTTACTAAGCTTTTGTGTT+TGG | - | chr1_1:67376905-67376924 | Msa0038110:intron | 30.0% |
| GAAAAGATGAAAACTTTCCA+GGG | + | chr1_1:67377434-67377453 | None:intergenic | 30.0% | |
| TGAGATTGAAAGGAGTTGTA+TGG | + | chr1_1:67373491-67373510 | None:intergenic | 35.0% | |
| GTGAATAGAAAAGAAAGGTG+GGG | + | chr1_1:67373533-67373552 | None:intergenic | 35.0% | |
| GTGTGAATAGAAAAGAAAGG+TGG | + | chr1_1:67373535-67373554 | None:intergenic | 35.0% | |
| GAGGTGTGAATAGAAAAGAA+AGG | + | chr1_1:67373538-67373557 | None:intergenic | 35.0% | |
| GATGTGATAGATTGAGAATG+TGG | + | chr1_1:67373600-67373619 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAATGCCACCCTTA+TGG | - | chr1_1:67373756-67373775 | Msa0038110:CDS | 35.0% |
| ATGCATACAGATCCAAGAAA+GGG | + | chr1_1:67373791-67373810 | None:intergenic | 35.0% | |
| AATGCATACAGATCCAAGAA+AGG | + | chr1_1:67373792-67373811 | None:intergenic | 35.0% | |
| TTTCTTGGATCTGTATGCAT+TGG | - | chr1_1:67373791-67373810 | Msa0038110:intron | 35.0% | |
| TACACTCAATTTGGATTTGG+TGG | + | chr1_1:67373995-67374014 | None:intergenic | 35.0% | |
| CGATACACTCAATTTGGATT+TGG | + | chr1_1:67373998-67374017 | None:intergenic | 35.0% | |
| CTAAAGCGATACACTCAATT+TGG | + | chr1_1:67374004-67374023 | None:intergenic | 35.0% | |
| ! | ATTGAGTGTATCGCTTTAGA+TGG | - | chr1_1:67374005-67374024 | Msa0038110:intron | 35.0% |
| CGATAGTGTGAATTCAAAAG+TGG | + | chr1_1:67374106-67374125 | None:intergenic | 35.0% | |
| TTTACACAAACAAAGAAGCC+TGG | + | chr1_1:67374288-67374307 | None:intergenic | 35.0% | |
| ACTCCTGCATTATTTGAAAG+TGG | - | chr1_1:67374315-67374334 | Msa0038110:CDS | 35.0% | |
| CTGCATTATTTGAAAGTGGA+GGG | - | chr1_1:67374319-67374338 | Msa0038110:CDS | 35.0% | |
| TTCAATGTTGTCACATCTGT+TGG | - | chr1_1:67374457-67374476 | Msa0038110:intron | 35.0% | |
| AGTTTAATGTGGAACTCAGT+TGG | - | chr1_1:67374817-67374836 | Msa0038110:intron | 35.0% | |
| !! | GGCTGACTTTTTCTCTATTT+TGG | - | chr1_1:67374858-67374877 | Msa0038110:intron | 35.0% |
| TACAGGGATCATACTCAATT+TGG | + | chr1_1:67374939-67374958 | None:intergenic | 35.0% | |
| CAAACAAACTTCCAATAAGC+AGG | + | chr1_1:67374963-67374982 | None:intergenic | 35.0% | |
| ! | CTGCTTATTGGAAGTTTGTT+TGG | - | chr1_1:67374961-67374980 | Msa0038110:intron | 35.0% |
| !! | GAGCATAGGTATTGTTCTTT+TGG | - | chr1_1:67375015-67375034 | Msa0038110:intron | 35.0% |
| GACGTAAGTGTAAACATGAA+AGG | - | chr1_1:67375061-67375080 | Msa0038110:intron | 35.0% | |
| !! | CACCTCAAAATTGACTTGTA+AGG | - | chr1_1:67375212-67375231 | Msa0038110:intron | 35.0% |
| ! | CACCTTACAAGTCAATTTTG+AGG | + | chr1_1:67375217-67375236 | None:intergenic | 35.0% |
| GCTCAAACCTTATAAGAACT+CGG | - | chr1_1:67375242-67375261 | Msa0038110:intron | 35.0% | |
| GAAGGAATTGGGTAAATGAA+GGG | + | chr1_1:67375303-67375322 | None:intergenic | 35.0% | |
| GGAAATCTATGGAAGGAATT+GGG | + | chr1_1:67375314-67375333 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGTCTACACAGCA+TGG | + | chr1_1:67375483-67375502 | None:intergenic | 35.0% |
| AAGCATCTAATGTATCTGTG+CGG | - | chr1_1:67375649-67375668 | Msa0038110:intron | 35.0% | |
| AGATGGAATTGGGTAAATAG+AGG | - | chr1_1:67375758-67375777 | Msa0038110:CDS | 35.0% | |
| CTTAAGTGTGAGAGAGATAT+AGG | + | chr1_1:67375818-67375837 | None:intergenic | 35.0% | |
| ATCTCTCTCACACTTAAGAA+TGG | - | chr1_1:67375820-67375839 | Msa0038110:intron | 35.0% | |
| CTATCTTAGAATTTGAGGGT+AGG | - | chr1_1:67375910-67375929 | Msa0038110:CDS | 35.0% | |
| ATCTTAGAATTTGAGGGTAG+GGG | - | chr1_1:67375912-67375931 | Msa0038110:CDS | 35.0% | |
| ! | AGTCATATCTTTGTTTGGTG+TGG | - | chr1_1:67376004-67376023 | Msa0038110:CDS | 35.0% |
| !! | GTCATATCTTTGTTTGGTGT+GGG | - | chr1_1:67376005-67376024 | Msa0038110:CDS | 35.0% |
| TCAGAAACGAATACTAATGC+GGG | - | chr1_1:67376064-67376083 | Msa0038110:intron | 35.0% | |
| !! | TTAAAAGGAGTGTTGATAGC+AGG | + | chr1_1:67376139-67376158 | None:intergenic | 35.0% |
| ! | GCTGGATCACTATTGTTATT+GGG | - | chr1_1:67376317-67376336 | Msa0038110:five_prime_UTR | 35.0% |
| TCAACCAATAGTCTAGAAGA+GGG | + | chr1_1:67376343-67376362 | None:intergenic | 35.0% | |
| TTATCCAGAACTTACCAAAG+AGG | + | chr1_1:67376402-67376421 | None:intergenic | 35.0% | |
| !! | GCCTTTGTTATTATACTGGA+TGG | - | chr1_1:67376494-67376513 | Msa0038110:intron | 35.0% |
| !! | TAAGCTTTTGTGTTTGGCTT+TGG | - | chr1_1:67376911-67376930 | Msa0038110:intron | 35.0% |
| ATCTGCCAATGCAGATAAAT+TGG | + | chr1_1:67376987-67377006 | None:intergenic | 35.0% | |
| TCTTCATATGTCCAAGTACT+TGG | + | chr1_1:67377026-67377045 | None:intergenic | 35.0% | |
| ! | ACAGCAAGATAGTTGATTCT+AGG | - | chr1_1:67377286-67377305 | Msa0038110:five_prime_UTR | 35.0% |
| ACTAGCTGATATCTCCTTAT+AGG | - | chr1_1:67377402-67377421 | Msa0038110:intron | 35.0% | |
| GGAAAAGATGAAAACTTTCC+AGG | + | chr1_1:67377435-67377454 | None:intergenic | 35.0% | |
| CGTGAAAGAATCCGAAAACA+TGG | - | chr1_1:67373221-67373240 | Msa0038110:three_prime_UTR | 40.0% | |
| TTGCTTATTTGCTTTGCAGC+AGG | + | chr1_1:67373454-67373473 | None:intergenic | 40.0% | |
| TGCATACAGATCCAAGAAAG+GGG | + | chr1_1:67373790-67373809 | None:intergenic | 40.0% | |
| ! | TTATGACCTTCCATTTTGCC+AGG | - | chr1_1:67374267-67374286 | Msa0038110:intron | 40.0% |
| AACAAAGAAGCCTGGCAAAA+TGG | + | chr1_1:67374280-67374299 | None:intergenic | 40.0% | |
| CCTCCACTTTCAAATAATGC+AGG | + | chr1_1:67374321-67374340 | None:intergenic | 40.0% | |
| CCTGCATTATTTGAAAGTGG+AGG | - | chr1_1:67374318-67374337 | Msa0038110:CDS | 40.0% | |
| TGAAAGTGGAGGGAATGTTA+TGG | - | chr1_1:67374329-67374348 | Msa0038110:CDS | 40.0% | |
| TTCTTCTCAGCTTTGCTTGA+AGG | + | chr1_1:67374409-67374428 | None:intergenic | 40.0% | |
| TTCAAGCAAAGCTGAGAAGA+AGG | - | chr1_1:67374408-67374427 | Msa0038110:CDS | 40.0% | |
| ! | GTAAACAAAGCTTTGATGGG+TGG | - | chr1_1:67374490-67374509 | Msa0038110:intron | 40.0% |
| ! | AAAGCTTTGATGGGTGGTTA+TGG | - | chr1_1:67374496-67374515 | Msa0038110:intron | 40.0% |
| !! | TTAACTTCTGGAGGCACTAA+TGG | + | chr1_1:67374885-67374904 | None:intergenic | 40.0% |
| TCAATTTGGCAATCTGCCAA+TGG | + | chr1_1:67374925-67374944 | None:intergenic | 40.0% | |
| CTTCCAATAAGCAGGATACA+GGG | + | chr1_1:67374955-67374974 | None:intergenic | 40.0% | |
| ACTTCCAATAAGCAGGATAC+AGG | + | chr1_1:67374956-67374975 | None:intergenic | 40.0% | |
| AGAGACACAAAACTGAGCAT+AGG | - | chr1_1:67375001-67375020 | Msa0038110:intron | 40.0% | |
| !! | GGTATTGTTCTTTTGGGAGT+TGG | - | chr1_1:67375022-67375041 | Msa0038110:intron | 40.0% |
| TGTACTCCACACTGCTATAA+AGG | + | chr1_1:67375098-67375117 | None:intergenic | 40.0% | |
| ! | GGTAGTACCGAGTTCTTATA+AGG | + | chr1_1:67375252-67375271 | None:intergenic | 40.0% |
| AATGGAGCAAAGTTGAACTC+AGG | + | chr1_1:67375273-67375292 | None:intergenic | 40.0% | |
| GGAAGGAATTGGGTAAATGA+AGG | + | chr1_1:67375304-67375323 | None:intergenic | 40.0% | |
| CGGAAATCTATGGAAGGAAT+TGG | + | chr1_1:67375315-67375334 | None:intergenic | 40.0% | |
| GAAATTTAACTGCCACGTGT+CGG | + | chr1_1:67375335-67375354 | None:intergenic | 40.0% | |
| GATAGAATCGAACTCTGTTC+AGG | + | chr1_1:67375407-67375426 | None:intergenic | 40.0% | |
| CTCTTCTCCTTGCCTTTATA+TGG | - | chr1_1:67375429-67375448 | Msa0038110:intron | 40.0% | |
| AGCATCTAATGTATCTGTGC+GGG | - | chr1_1:67375650-67375669 | Msa0038110:intron | 40.0% | |
| ! | ATGGACATTTGAAATGTGGG+TGG | - | chr1_1:67375839-67375858 | Msa0038110:intron | 40.0% |
| !! | CATCTTACTAGCCGATTTGT+GGG | + | chr1_1:67375949-67375968 | None:intergenic | 40.0% |
| !! | TCATCTTACTAGCCGATTTG+TGG | + | chr1_1:67375950-67375969 | None:intergenic | 40.0% |
| TTCTACTCTTGAGTGTGAGA+GGG | + | chr1_1:67376043-67376062 | None:intergenic | 40.0% | |
| TTTCTACTCTTGAGTGTGAG+AGG | + | chr1_1:67376044-67376063 | None:intergenic | 40.0% | |
| GGCTGGATCACTATTGTTAT+TGG | - | chr1_1:67376316-67376335 | Msa0038110:five_prime_UTR | 40.0% | |
| GTCAACCAATAGTCTAGAAG+AGG | + | chr1_1:67376344-67376363 | None:intergenic | 40.0% | |
| TGTCATGCACTATTGCAGTT+GGG | - | chr1_1:67376950-67376969 | Msa0038110:intron | 40.0% | |
| CAATGCAGATAAATTGGCTG+AGG | + | chr1_1:67376981-67377000 | None:intergenic | 40.0% | |
| CTCAGCCAATTTATCTGCAT+TGG | - | chr1_1:67376979-67376998 | Msa0038110:intron | 40.0% | |
| GCTGTATCTTTCCAAGTACT+TGG | - | chr1_1:67377012-67377031 | Msa0038110:intron | 40.0% | |
| ! | TGGGATTCTTTTTCTTTGGG+AGG | - | chr1_1:67377064-67377083 | Msa0038110:intron | 40.0% |
| !! | GGGATTCTTTTTCTTTGGGA+GGG | - | chr1_1:67377065-67377084 | Msa0038110:intron | 40.0% |
| !! | TTCTTTTTCTTTGGGAGGGA+AGG | - | chr1_1:67377069-67377088 | Msa0038110:intron | 40.0% |
| GGGATGATAATAGCTGTTGT+TGG | - | chr1_1:67377114-67377133 | Msa0038110:intron | 40.0% | |
| TAGCTGTTGTTGGAATGATG+TGG | - | chr1_1:67377124-67377143 | Msa0038110:intron | 40.0% | |
| GTTGTTGGAATGATGTGGTA+TGG | - | chr1_1:67377129-67377148 | Msa0038110:intron | 40.0% | |
| ! | GACTTTCTGTTTTGCTGGTA+GGG | + | chr1_1:67377203-67377222 | None:intergenic | 40.0% |
| CTACCAGCAAAACAGAAAGT+CGG | - | chr1_1:67377202-67377221 | Msa0038110:five_prime_UTR | 40.0% | |
| TATTTGCTTTGCAGCAGGAG+TGG | + | chr1_1:67373449-67373468 | None:intergenic | 45.0% | |
| AAAGAAAGGTGGGGTGTGTT+GGG | + | chr1_1:67373524-67373543 | None:intergenic | 45.0% | |
| AAAAGAAAGGTGGGGTGTGT+TGG | + | chr1_1:67373525-67373544 | None:intergenic | 45.0% | |
| TCTATTCACACCTCCATCCA+CGG | - | chr1_1:67373544-67373563 | Msa0038110:CDS | 45.0% | |
| AAAAGGAAGCTAACCGTGGA+TGG | + | chr1_1:67373560-67373579 | None:intergenic | 45.0% | |
| AGAGAAAAGGAAGCTAACCG+TGG | + | chr1_1:67373564-67373583 | None:intergenic | 45.0% | |
| AAGGGGTCTCAGATCCATAA+GGG | + | chr1_1:67373773-67373792 | None:intergenic | 45.0% | |
| AAAGGGGTCTCAGATCCATA+AGG | + | chr1_1:67373774-67373793 | None:intergenic | 45.0% | |
| AAGAAGCCTGGCAAAATGGA+AGG | + | chr1_1:67374276-67374295 | None:intergenic | 45.0% | |
| AAGTGGAGGGAATGTTATGG+AGG | - | chr1_1:67374332-67374351 | Msa0038110:CDS | 45.0% | |
| GAGATCCGTGTGAAGTTTGA+AGG | - | chr1_1:67374365-67374384 | Msa0038110:CDS | 45.0% | |
| ! | GGTGGTTATGGCTTCAGTTT+TGG | - | chr1_1:67374508-67374527 | Msa0038110:intron | 45.0% |
| CTATCATGACGCTCGTACTA+CGG | - | chr1_1:67374701-67374720 | Msa0038110:intron | 45.0% | |
| TATCATGACGCTCGTACTAC+GGG | - | chr1_1:67374702-67374721 | Msa0038110:intron | 45.0% | |
| ACAATGGAAGATGAGATGGC+TGG | + | chr1_1:67374741-67374760 | None:intergenic | 45.0% | |
| TCGGACAATGGAAGATGAGA+TGG | + | chr1_1:67374745-67374764 | None:intergenic | 45.0% | |
| GATCCCTGTATCCTGCTTAT+TGG | - | chr1_1:67374949-67374968 | Msa0038110:intron | 45.0% | |
| ACGTGTCGGAAATCTATGGA+AGG | + | chr1_1:67375321-67375340 | None:intergenic | 45.0% | |
| TTCCATAGATTTCCGACACG+TGG | - | chr1_1:67375320-67375339 | Msa0038110:intron | 45.0% | |
| GCATCTAATGTATCTGTGCG+GGG | - | chr1_1:67375651-67375670 | Msa0038110:intron | 45.0% | |
| CATCTAATGTATCTGTGCGG+GGG | - | chr1_1:67375652-67375671 | Msa0038110:CDS | 45.0% | |
| GAAACGAATACTAATGCGGG+TGG | - | chr1_1:67376067-67376086 | Msa0038110:intron | 45.0% | |
| TTCTTACGATGCAGCCTCTT+TGG | - | chr1_1:67376385-67376404 | Msa0038110:five_prime_UTR | 45.0% | |
| CAACTGCAATAGTGCATGAC+AGG | + | chr1_1:67376951-67376970 | None:intergenic | 45.0% | |
| CTGTCATGCACTATTGCAGT+TGG | - | chr1_1:67376949-67376968 | Msa0038110:intron | 45.0% | |
| GCAGATAAATTGGCTGAGGT+TGG | + | chr1_1:67376977-67376996 | None:intergenic | 45.0% | |
| ! | TGGTAATGCCTCATCAAAGC+CGG | - | chr1_1:67377149-67377168 | Msa0038110:intron | 45.0% |
| ! | CGACTTTCTGTTTTGCTGGT+AGG | + | chr1_1:67377204-67377223 | None:intergenic | 45.0% |
| !!! | TCACCGACTTTCTGTTTTGC+TGG | + | chr1_1:67377208-67377227 | None:intergenic | 45.0% |
| ! | TTCCAGGGAGCATACCTATA+AGG | + | chr1_1:67377419-67377438 | None:intergenic | 45.0% |
| ! | TGGATCTGAGACCCCTTTCT+TGG | - | chr1_1:67373776-67373795 | Msa0038110:intron | 50.0% |
| CCTGTTAACGTTGTAGCTGC+AGG | + | chr1_1:67374661-67374680 | None:intergenic | 50.0% | |
| CCTGCAGCTACAACGTTAAC+AGG | - | chr1_1:67374658-67374677 | Msa0038110:intron | 50.0% | |
| TTGCGGCCTTTATAGCAGTG+TGG | - | chr1_1:67375089-67375108 | Msa0038110:intron | 50.0% | |
| TGCCACGTGTCGGAAATCTA+TGG | + | chr1_1:67375325-67375344 | None:intergenic | 50.0% | |
| GCGACGTCCATATAAAGGCA+AGG | + | chr1_1:67375439-67375458 | None:intergenic | 50.0% | |
| AGTGCGCGACGTCCATATAA+AGG | + | chr1_1:67375444-67375463 | None:intergenic | 50.0% | |
| TGTGCGGGTAAACATCTGTG+CGG | - | chr1_1:67375613-67375632 | Msa0038110:intron | 50.0% | |
| AATAGTGATCCAGCCTGTGC+GGG | + | chr1_1:67376311-67376330 | None:intergenic | 50.0% | |
| CAATAGTGATCCAGCCTGTG+CGG | + | chr1_1:67376312-67376331 | None:intergenic | 50.0% | |
| TGGGCCCTCTTCTAGACTAT+TGG | - | chr1_1:67376336-67376355 | Msa0038110:five_prime_UTR | 50.0% | |
| GCAGCCTCTTTGGTAAGTTC+TGG | - | chr1_1:67376395-67376414 | Msa0038110:five_prime_UTR | 50.0% | |
| GGTAATGCCTCATCAAAGCC+GGG | - | chr1_1:67377150-67377169 | Msa0038110:five_prime_UTR | 50.0% | |
| CTCCTTATAGGTATGCTCCC+TGG | - | chr1_1:67377414-67377433 | Msa0038110:intron | 50.0% | |
| AGGAAGCTAACCGTGGATGG+AGG | + | chr1_1:67373557-67373576 | None:intergenic | 55.0% | |
| GGGTCTCAGATCCATAAGGG+TGG | + | chr1_1:67373770-67373789 | None:intergenic | 55.0% | |
| CATCCATGCCGCAGCATCTA+CGG | + | chr1_1:67374437-67374456 | None:intergenic | 55.0% | |
| TCTACACAGCATGGCAGCAG+TGG | + | chr1_1:67375474-67375493 | None:intergenic | 55.0% | |
| ! | CGGGTGCTGTATGTCCCAAA+AGG | + | chr1_1:67376292-67376311 | None:intergenic | 55.0% |
| AATGCCTCATCAAAGCCGGG+TGG | - | chr1_1:67377153-67377172 | Msa0038110:five_prime_UTR | 55.0% | |
| ! | CTTTCCACCCGGCTTTGATG+AGG | + | chr1_1:67377160-67377179 | None:intergenic | 55.0% |
| CTCATCAAAGCCGGGTGGAA+AGG | - | chr1_1:67377158-67377177 | Msa0038110:five_prime_UTR | 55.0% | |
| CTCCAACGTTCCTTTCCACC+CGG | + | chr1_1:67377171-67377190 | None:intergenic | 55.0% | |
| GAAGGCAGCCGTAGATGCTG+CGG | - | chr1_1:67374426-67374445 | Msa0038110:CDS | 60.0% | |
| ACGCTCGTACTACGGGTGCT+GGG | - | chr1_1:67374709-67374728 | Msa0038110:intron | 60.0% | |
| AGCCGGGTGGAAAGGAACGT+TGG | - | chr1_1:67377166-67377185 | Msa0038110:five_prime_UTR | 60.0% | |
| CAGCCGTAGATGCTGCGGCA+TGG | - | chr1_1:67374431-67374450 | Msa0038110:CDS | 65.0% | |
| GACGCTCGTACTACGGGTGC+TGG | - | chr1_1:67374708-67374727 | Msa0038110:intron | 65.0% | |
| GGGACATACAGCACCCGCAC+AGG | - | chr1_1:67376295-67376314 | Msa0038110:CDS | 65.0% | |
| CATACAGCACCCGCACAGGC+TGG | - | chr1_1:67376299-67376318 | Msa0038110:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 67373202 | 67377513 | 67373202 | ID=Msa0038110;Name=Msa0038110 |
| chr1_1 | mRNA | 67373202 | 67377513 | 67373202 | ID=Msa0038110-mRNA-1;Parent=Msa0038110;Name=Msa0038110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=411|0.83|0.85|1|0.66|0.57|7|286|299 |
| chr1_1 | exon | 67373202 | 67373778 | 67373202 | ID=Msa0038110-mRNA-1:exon:21903;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67374309 | 67374470 | 67374309 | ID=Msa0038110-mRNA-1:exon:21902;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67375652 | 67375783 | 67375652 | ID=Msa0038110-mRNA-1:exon:21901;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67375866 | 67376050 | 67375866 | ID=Msa0038110-mRNA-1:exon:21900;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67376186 | 67376426 | 67376186 | ID=Msa0038110-mRNA-1:exon:21899;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67377150 | 67377379 | 67377150 | ID=Msa0038110-mRNA-1:exon:21898;Parent=Msa0038110-mRNA-1 |
| chr1_1 | exon | 67377444 | 67377513 | 67377444 | ID=Msa0038110-mRNA-1:exon:21897;Parent=Msa0038110-mRNA-1 |
| chr1_1 | five_prime_UTR | 67377444 | 67377513 | 67377444 | ID=Msa0038110-mRNA-1:five_prime_utr;Parent=Msa0038110-mRNA-1 |
| chr1_1 | five_prime_UTR | 67377150 | 67377379 | 67377150 | ID=Msa0038110-mRNA-1:five_prime_utr;Parent=Msa0038110-mRNA-1 |
| chr1_1 | five_prime_UTR | 67376316 | 67376426 | 67376316 | ID=Msa0038110-mRNA-1:five_prime_utr;Parent=Msa0038110-mRNA-1 |
| chr1_1 | CDS | 67376186 | 67376315 | 67376186 | ID=Msa0038110-mRNA-1:cds;Parent=Msa0038110-mRNA-1 |
| chr1_1 | CDS | 67375866 | 67376050 | 67375866 | ID=Msa0038110-mRNA-1:cds;Parent=Msa0038110-mRNA-1 |
| chr1_1 | CDS | 67375652 | 67375783 | 67375652 | ID=Msa0038110-mRNA-1:cds;Parent=Msa0038110-mRNA-1 |
| chr1_1 | CDS | 67374309 | 67374470 | 67374309 | ID=Msa0038110-mRNA-1:cds;Parent=Msa0038110-mRNA-1 |
| chr1_1 | CDS | 67373488 | 67373778 | 67373488 | ID=Msa0038110-mRNA-1:cds;Parent=Msa0038110-mRNA-1 |
| chr1_1 | three_prime_UTR | 67373202 | 67373487 | 67373202 | ID=Msa0038110-mRNA-1:three_prime_utr;Parent=Msa0038110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
