Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085790 | XP_003592049.1 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.57e-108 | 314 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085790 | sp|P34788|RS18_ARATH | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.93e-104 | 298 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085790 | B7FMJ8 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.66e-108 | 314 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0085790 | Msa0086750 | 0.854608 | 1.098845e-61 | -8.615850e-47 |
Msa0085790 | Msa0483390 | 0.859539 | 3.856713e-63 | -8.615850e-47 |
Msa0085790 | Msa0725440 | 0.832286 | 1.031070e-55 | -8.615850e-47 |
Msa0085790 | Msa0953310 | 0.804110 | 2.527633e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085790 | MtrunA17_Chr1g0201521 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.12e-112 | 314 |
Msa0085790 | MtrunA17_Chr1g0201481 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.12e-112 | 314 |
Msa0085790 | MtrunA17_Chr6g0467091 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 5.31e-111 | 311 |
Msa0085790 | MtrunA17_Chr5g0409931 | 94.286 | 105 | 6 | 0 | 36 | 140 | 12 | 116 | 2.72e-70 | 207 |
Msa0085790 | MtrunA17_Chr5g0409851 | 93.258 | 89 | 6 | 0 | 52 | 140 | 1 | 89 | 3.41e-58 | 176 |
Msa0085790 | MtrunA17_Chr5g0409921 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 4.30e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409871 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409881 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409861 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409911 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409891 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
Msa0085790 | MtrunA17_Chr5g0409901 | 95.714 | 70 | 3 | 0 | 52 | 121 | 1 | 70 | 1.12e-43 | 138 |
Msa0085790 | MtrunA17_Chr4g0006461 | 76.562 | 64 | 14 | 1 | 67 | 129 | 9 | 72 | 3.44e-28 | 99.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085790 | AT4G09800.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
Msa0085790 | AT1G34030.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
Msa0085790 | AT1G22780.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
Find 50 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGAAGTTGAGAGATGATT+TGG | 0.279609 | 1_2:-66093226 | Msa0085790:CDS |
CAACTTCATGTCGAGTTGAT+TGG | 0.309472 | 1_2:+66093239 | None:intergenic |
CGTCCGCAGTTAGGTTAAAA+TGG | 0.345502 | 1_2:-66093789 | Msa0085790:intron |
AGGCTGTCTGTATGTCGCTC+TGG | 0.346942 | 1_2:+66093846 | None:intergenic |
TTAAGCGTGATGTCCTGTTT+TGG | 0.377769 | 1_2:-66092167 | Msa0085790:exon |
TCCCCTGCGGCCTGTAGTCT+TGG | 0.394682 | 1_2:+66092216 | None:intergenic |
CCAACACCATTCAACTAATC+AGG | 0.407303 | 1_2:+66092023 | None:intergenic |
TTTCATATACCGAGTTTGTA+TGG | 0.407920 | 1_2:-66092101 | Msa0085790:three_prime_UTR |
AAAATCCTCCGTCCGCAGTT+AGG | 0.418193 | 1_2:-66093798 | Msa0085790:five_prime_UTR |
AATCATCTAATCTCCAAAAC+AGG | 0.431449 | 1_2:+66092154 | None:intergenic |
TTCTGTTATGCAGTAATCAC+CGG | 0.438670 | 1_2:-66092282 | Msa0085790:intron |
GGCTGTCTGTATGTCGCTCT+GGG | 0.453352 | 1_2:+66093847 | None:intergenic |
GTGTTGAACACAAATGTTGA+TGG | 0.456259 | 1_2:-66093646 | Msa0085790:CDS |
TGCGAATCCTCGTCAATTCA+AGG | 0.456574 | 1_2:-66093325 | Msa0085790:CDS |
TACTGGGGCCTTCGTGTTCG+TGG | 0.457512 | 1_2:-66092247 | Msa0085790:CDS |
TGATTGAGGTCATTGCGAAC+TGG | 0.463060 | 1_2:+66093611 | None:intergenic |
AGAGGGGTAATTGCCGCTTA+AGG | 0.471260 | 1_2:+66093826 | None:intergenic |
CCGGGGTTTGAGACACTACT+GGG | 0.483703 | 1_2:-66092263 | Msa0085790:CDS |
GTTCGCAATGACCTCAATCA+AGG | 0.484324 | 1_2:-66093608 | Msa0085790:CDS |
CAAGGATGGCAAATTCTCTC+AGG | 0.484690 | 1_2:-66093268 | Msa0085790:CDS |
ACCGGGGTTTGAGACACTAC+TGG | 0.492415 | 1_2:-66092264 | Msa0085790:CDS |
ATGACCTCAATCAAGGGTAT+TGG | 0.493197 | 1_2:-66093601 | Msa0085790:CDS |
GTCAATTCAAGGTTCCAGAT+TGG | 0.495981 | 1_2:-66093314 | Msa0085790:CDS |
CAAGTGCCTGATTAGTTGAA+TGG | 0.501343 | 1_2:-66092029 | Msa0085790:three_prime_UTR |
TGGAGAGACTCAAGAAGATC+CGG | 0.512286 | 1_2:-66093206 | Msa0085790:intron |
CCCAGTAGTGTCTCAAACCC+CGG | 0.525189 | 1_2:+66092263 | None:intergenic |
GAACAGAAAGAAGGATTACA+AGG | 0.525479 | 1_2:-66093286 | Msa0085790:CDS |
GATGTGGTTATAGTCTTTGG+TGG | 0.556464 | 1_2:-66093698 | Msa0085790:intron |
TGAATTGAGTGCCGCGGAGT+TGG | 0.561127 | 1_2:-66093367 | Msa0085790:CDS |
CCTGATTAGTTGAATGGTGT+TGG | 0.562322 | 1_2:-66092023 | Msa0085790:intron |
AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | 1_2:-66093282 | Msa0085790:CDS |
GGTCAGCATACCAAGACTAC+AGG | 0.569467 | 1_2:-66092226 | Msa0085790:CDS |
TACCAAGACTACAGGCCGCA+GGG | 0.580402 | 1_2:-66092218 | Msa0085790:CDS |
CCTACCAATACCCTTGATTG+AGG | 0.590405 | 1_2:+66093597 | None:intergenic |
ATACCAAGACTACAGGCCGC+AGG | 0.594524 | 1_2:-66092219 | Msa0085790:CDS |
TCTGTTATGCAGTAATCACC+GGG | 0.594587 | 1_2:-66092281 | Msa0085790:intron |
CTGATGTTGACATGAACAAG+AGG | 0.595729 | 1_2:-66093546 | Msa0085790:intron |
GGCCGCAGGGGAAAGACTGT+TGG | 0.608087 | 1_2:-66092205 | Msa0085790:CDS |
GACATACAGACAGCCTTAAG+CGG | 0.615799 | 1_2:-66093839 | Msa0085790:five_prime_UTR |
TTCGCAATGACCTCAATCAA+GGG | 0.622158 | 1_2:-66093607 | Msa0085790:CDS |
GGCTGGTGAATTGAGTGCCG+CGG | 0.628828 | 1_2:-66093373 | Msa0085790:CDS |
CCTCAATCAAGGGTATTGGT+AGG | 0.631523 | 1_2:-66093597 | Msa0085790:CDS |
TTTAACCTAACTGCGGACGG+AGG | 0.653943 | 1_2:+66093793 | None:intergenic |
ACCAAGACTACAGGCCGCAG+GGG | 0.654823 | 1_2:-66092217 | Msa0085790:CDS |
TCTGGAACCTTGAATTGACG+AGG | 0.669518 | 1_2:+66093318 | None:intergenic |
CATAATATTATCCAACTCCG+CGG | 0.714027 | 1_2:+66093356 | None:intergenic |
CTGTTATGCAGTAATCACCG+GGG | 0.730953 | 1_2:-66092280 | Msa0085790:intron |
TATGCTGACCACGAACACGA+AGG | 0.739225 | 1_2:+66092239 | None:intergenic |
CACCAACAGTCTTTCCCCTG+CGG | 0.740988 | 1_2:+66092203 | None:intergenic |
CGGGGTTTGAGACACTACTG+GGG | 0.755067 | 1_2:-66092262 | Msa0085790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTGTTGTTAAAATTAA+TGG | - | chr1_2:66092334-66092353 | Msa0085790:intron | 10.0% |
!!! | TTTTTGTTGTTAAAATTAAT+GGG | - | chr1_2:66092335-66092354 | Msa0085790:intron | 10.0% |
!! | AATTCAATTCAATAATATAA+TGG | - | chr1_2:66093461-66093480 | Msa0085790:intron | 10.0% |
!!! | ATTTTTGTTGTTAAAATTAA+TGG | - | chr1_2:66092334-66092353 | Msa0085790:intron | 10.0% |
!!! | TTTTTGTTGTTAAAATTAAT+GGG | - | chr1_2:66092335-66092354 | Msa0085790:intron | 10.0% |
!! | AATTCAATTCAATAATATAA+TGG | - | chr1_2:66093461-66093480 | Msa0085790:intron | 10.0% |
!!! | TTTTGATATTATTGTTGAAA+TGG | - | chr1_2:66092397-66092416 | Msa0085790:intron | 15.0% |
!! | TTTGATATTATTGTTGAAAT+GGG | - | chr1_2:66092398-66092417 | Msa0085790:intron | 15.0% |
!! | TTTGAGTAGTAAAAAAATAA+TGG | + | chr1_2:66093384-66093403 | None:intergenic | 15.0% |
!!! | TTTTGATATTATTGTTGAAA+TGG | - | chr1_2:66092397-66092416 | Msa0085790:intron | 15.0% |
!! | TTTGATATTATTGTTGAAAT+GGG | - | chr1_2:66092398-66092417 | Msa0085790:intron | 15.0% |
!! | TTTGAGTAGTAAAAAAATAA+TGG | + | chr1_2:66093384-66093403 | None:intergenic | 15.0% |
!!! | GTTTTTTTTTTTTTGTGATG+TGG | - | chr1_2:66092106-66092125 | Msa0085790:three_prime_UTR | 20.0% |
!!! | ATTTTAAAAGTGAGCAAAAT+CGG | + | chr1_2:66092309-66092328 | None:intergenic | 20.0% |
!!! | TTTTGTTGTTGGATTTTTTT+AGG | - | chr1_2:66092425-66092444 | Msa0085790:intron | 20.0% |
!!! | TTTGTTGTTGGATTTTTTTA+GGG | - | chr1_2:66092426-66092445 | Msa0085790:intron | 20.0% |
!! | AATACATAGTAAAAAATGCA+AGG | + | chr1_2:66093089-66093108 | None:intergenic | 20.0% |
!! | TATGATATTCATGTTGATAT+AGG | - | chr1_2:66093125-66093144 | Msa0085790:intron | 20.0% |
!! | ATGATATTCATGTTGATATA+GGG | - | chr1_2:66093126-66093145 | Msa0085790:intron | 20.0% |
!!! | CAATAAAATTTTAGACTGTT+TGG | - | chr1_2:66093176-66093195 | Msa0085790:intron | 20.0% |
!! | AATAAGATGAAAACAGTTTA+TGG | - | chr1_2:66093272-66093291 | Msa0085790:CDS | 20.0% |
!! | TAGTTTAAATAAATCCTATC+TGG | - | chr1_2:66093351-66093370 | Msa0085790:CDS | 20.0% |
!! | AGTTTAAATAAATCCTATCT+GGG | - | chr1_2:66093352-66093371 | Msa0085790:CDS | 20.0% |
!! | TTCTGTATTCAATAATACAA+TGG | - | chr1_2:66093404-66093423 | Msa0085790:intron | 20.0% |
!!! | AATAATATAATGGATGTATG+TGG | - | chr1_2:66093471-66093490 | Msa0085790:intron | 20.0% |
!! | AATTAAAAACCATACAAACT+CGG | + | chr1_2:66093731-66093750 | None:intergenic | 20.0% |
!!! | CAGATTTTTTAACTTTCTAA+TGG | - | chr1_2:66093858-66093877 | Msa0085790:five_prime_UTR | 20.0% |
!!! | GTTTTTTTTTTTTTGTGATG+TGG | - | chr1_2:66092106-66092125 | Msa0085790:three_prime_UTR | 20.0% |
!!! | ATTTTAAAAGTGAGCAAAAT+CGG | + | chr1_2:66092309-66092328 | None:intergenic | 20.0% |
!!! | TTTTGTTGTTGGATTTTTTT+AGG | - | chr1_2:66092425-66092444 | Msa0085790:intron | 20.0% |
!!! | TTTGTTGTTGGATTTTTTTA+GGG | - | chr1_2:66092426-66092445 | Msa0085790:intron | 20.0% |
!! | AATACATAGTAAAAAATGCA+AGG | + | chr1_2:66093089-66093108 | None:intergenic | 20.0% |
!! | TATGATATTCATGTTGATAT+AGG | - | chr1_2:66093125-66093144 | Msa0085790:intron | 20.0% |
!! | ATGATATTCATGTTGATATA+GGG | - | chr1_2:66093126-66093145 | Msa0085790:intron | 20.0% |
!!! | CAATAAAATTTTAGACTGTT+TGG | - | chr1_2:66093176-66093195 | Msa0085790:intron | 20.0% |
!! | AATAAGATGAAAACAGTTTA+TGG | - | chr1_2:66093272-66093291 | Msa0085790:CDS | 20.0% |
!! | TAGTTTAAATAAATCCTATC+TGG | - | chr1_2:66093351-66093370 | Msa0085790:CDS | 20.0% |
!! | AGTTTAAATAAATCCTATCT+GGG | - | chr1_2:66093352-66093371 | Msa0085790:CDS | 20.0% |
!! | TTCTGTATTCAATAATACAA+TGG | - | chr1_2:66093404-66093423 | Msa0085790:intron | 20.0% |
!!! | AATAATATAATGGATGTATG+TGG | - | chr1_2:66093471-66093490 | Msa0085790:intron | 20.0% |
!! | AATTAAAAACCATACAAACT+CGG | + | chr1_2:66093731-66093750 | None:intergenic | 20.0% |
!!! | CAGATTTTTTAACTTTCTAA+TGG | - | chr1_2:66093858-66093877 | Msa0085790:five_prime_UTR | 20.0% |
!! | AGAATGCGAAAGAAATTTTA+GGG | + | chr1_2:66091947-66091966 | None:intergenic | 25.0% |
! | ATCATCTTTATAGTTAACAC+AGG | + | chr1_2:66092678-66092697 | None:intergenic | 25.0% |
!!! | ACATTTTAACACTACTATGT+AGG | - | chr1_2:66092735-66092754 | Msa0085790:intron | 25.0% |
! | TTAGAACGAGAATTAACTAT+TGG | - | chr1_2:66092817-66092836 | Msa0085790:intron | 25.0% |
! | GAAAACAAAATACAAGTCAT+TGG | + | chr1_2:66093038-66093057 | None:intergenic | 25.0% |
!!! | ACTTGTATTTTGTTTTCTCT+TGG | - | chr1_2:66093041-66093060 | Msa0085790:intron | 25.0% |
! | ACAGTTTAATTAAGCACTTA+TGG | - | chr1_2:66093203-66093222 | Msa0085790:intron | 25.0% |
! | AATAATACAATGGATGTATG+TGG | - | chr1_2:66093414-66093433 | Msa0085790:intron | 25.0% |
!!! | TGGTTTTTAATTGAATGCAT+TGG | - | chr1_2:66093739-66093758 | Msa0085790:intron | 25.0% |
!! | TTGGCAATTTCAATTTTGTT+TGG | - | chr1_2:66093758-66093777 | Msa0085790:intron | 25.0% |
! | AAAAAATCTGAAGAGCAAAT+TGG | + | chr1_2:66093848-66093867 | None:intergenic | 25.0% |
!! | AGAATGCGAAAGAAATTTTA+GGG | + | chr1_2:66091947-66091966 | None:intergenic | 25.0% |
! | ATCATCTTTATAGTTAACAC+AGG | + | chr1_2:66092678-66092697 | None:intergenic | 25.0% |
!!! | ACATTTTAACACTACTATGT+AGG | - | chr1_2:66092735-66092754 | Msa0085790:intron | 25.0% |
! | TTAGAACGAGAATTAACTAT+TGG | - | chr1_2:66092817-66092836 | Msa0085790:intron | 25.0% |
! | GAAAACAAAATACAAGTCAT+TGG | + | chr1_2:66093038-66093057 | None:intergenic | 25.0% |
!!! | ACTTGTATTTTGTTTTCTCT+TGG | - | chr1_2:66093041-66093060 | Msa0085790:intron | 25.0% |
! | ACAGTTTAATTAAGCACTTA+TGG | - | chr1_2:66093203-66093222 | Msa0085790:intron | 25.0% |
! | AATAATACAATGGATGTATG+TGG | - | chr1_2:66093414-66093433 | Msa0085790:intron | 25.0% |
!!! | TGGTTTTTAATTGAATGCAT+TGG | - | chr1_2:66093739-66093758 | Msa0085790:intron | 25.0% |
!! | TTGGCAATTTCAATTTTGTT+TGG | - | chr1_2:66093758-66093777 | Msa0085790:intron | 25.0% |
! | AAAAAATCTGAAGAGCAAAT+TGG | + | chr1_2:66093848-66093867 | None:intergenic | 25.0% |
!!! | ATTTTAGGGTTTGTGAGAAT+GGG | + | chr1_2:66091933-66091952 | None:intergenic | 30.0% |
!!! | AATTTTAGGGTTTGTGAGAA+TGG | + | chr1_2:66091934-66091953 | None:intergenic | 30.0% |
! | CAGAATGCGAAAGAAATTTT+AGG | + | chr1_2:66091948-66091967 | None:intergenic | 30.0% |
!! | ATACCATTTTAACCTAACTG+CGG | + | chr1_2:66092037-66092056 | None:intergenic | 30.0% |
!!! | AAATGGGTTGTTTTTGTTGT+TGG | - | chr1_2:66092414-66092433 | Msa0085790:intron | 30.0% |
TTTCTGTTCAAAAACCAATC+TGG | + | chr1_2:66092523-66092542 | None:intergenic | 30.0% | |
!! | TTGGTTTTTGAACAGAAAGA+AGG | - | chr1_2:66092525-66092544 | Msa0085790:intron | 30.0% |
!!! | CTCAGTTGGTTTTTTAGTAT+AGG | - | chr1_2:66092703-66092722 | Msa0085790:intron | 30.0% |
AGATGTAGTAGTAAGATGAT+AGG | - | chr1_2:66092771-66092790 | Msa0085790:intron | 30.0% | |
AGTGTTTGAAAATAGAACAG+TGG | - | chr1_2:66092921-66092940 | Msa0085790:intron | 30.0% | |
GTGTTTGAAAATAGAACAGT+GGG | - | chr1_2:66092922-66092941 | Msa0085790:intron | 30.0% | |
AATCAAATGTTTCCCATAAG+CGG | - | chr1_2:66092968-66092987 | Msa0085790:intron | 30.0% | |
ATGAAAACAGTTTATGGACA+TGG | - | chr1_2:66093278-66093297 | Msa0085790:CDS | 30.0% | |
TTTGCATAAGCAAACTGTTT+GGG | + | chr1_2:66093326-66093345 | None:intergenic | 30.0% | |
ATTTGCATAAGCAAACTGTT+TGG | + | chr1_2:66093327-66093346 | None:intergenic | 30.0% | |
AATCATCTAATCTCCAAAAC+AGG | + | chr1_2:66093669-66093688 | None:intergenic | 30.0% | |
! | TTGGAGATTAGATGATTTTG+AGG | - | chr1_2:66093672-66093691 | Msa0085790:CDS | 30.0% |
TTTCATATACCGAGTTTGTA+TGG | - | chr1_2:66093719-66093738 | Msa0085790:intron | 30.0% | |
!!! | ATTTTAGGGTTTGTGAGAAT+GGG | + | chr1_2:66091933-66091952 | None:intergenic | 30.0% |
!!! | AATTTTAGGGTTTGTGAGAA+TGG | + | chr1_2:66091934-66091953 | None:intergenic | 30.0% |
! | CAGAATGCGAAAGAAATTTT+AGG | + | chr1_2:66091948-66091967 | None:intergenic | 30.0% |
!! | ATACCATTTTAACCTAACTG+CGG | + | chr1_2:66092037-66092056 | None:intergenic | 30.0% |
!!! | AAATGGGTTGTTTTTGTTGT+TGG | - | chr1_2:66092414-66092433 | Msa0085790:intron | 30.0% |
TTTCTGTTCAAAAACCAATC+TGG | + | chr1_2:66092523-66092542 | None:intergenic | 30.0% | |
!! | TTGGTTTTTGAACAGAAAGA+AGG | - | chr1_2:66092525-66092544 | Msa0085790:intron | 30.0% |
!!! | CTCAGTTGGTTTTTTAGTAT+AGG | - | chr1_2:66092703-66092722 | Msa0085790:intron | 30.0% |
AGATGTAGTAGTAAGATGAT+AGG | - | chr1_2:66092771-66092790 | Msa0085790:intron | 30.0% | |
AGTGTTTGAAAATAGAACAG+TGG | - | chr1_2:66092921-66092940 | Msa0085790:intron | 30.0% | |
GTGTTTGAAAATAGAACAGT+GGG | - | chr1_2:66092922-66092941 | Msa0085790:intron | 30.0% | |
AATCAAATGTTTCCCATAAG+CGG | - | chr1_2:66092968-66092987 | Msa0085790:intron | 30.0% | |
ATGAAAACAGTTTATGGACA+TGG | - | chr1_2:66093278-66093297 | Msa0085790:CDS | 30.0% | |
TTTGCATAAGCAAACTGTTT+GGG | + | chr1_2:66093326-66093345 | None:intergenic | 30.0% | |
ATTTGCATAAGCAAACTGTT+TGG | + | chr1_2:66093327-66093346 | None:intergenic | 30.0% | |
AATCATCTAATCTCCAAAAC+AGG | + | chr1_2:66093669-66093688 | None:intergenic | 30.0% | |
! | TTGGAGATTAGATGATTTTG+AGG | - | chr1_2:66093672-66093691 | Msa0085790:CDS | 30.0% |
TTTCATATACCGAGTTTGTA+TGG | - | chr1_2:66093719-66093738 | Msa0085790:intron | 30.0% | |
TGTGATGTGGTTATAGTCTT+TGG | - | chr1_2:66092119-66092138 | Msa0085790:three_prime_UTR | 35.0% | |
GTGTTGAACACAAATGTTGA+TGG | - | chr1_2:66092174-66092193 | Msa0085790:exon | 35.0% | |
!!! | TTGTTGGATTTTTTTAGGGC+TGG | - | chr1_2:66092430-66092449 | Msa0085790:intron | 35.0% |
CATAATATTATCCAACTCCG+CGG | + | chr1_2:66092467-66092486 | None:intergenic | 35.0% | |
GAACAGAAAGAAGGATTACA+AGG | - | chr1_2:66092534-66092553 | Msa0085790:intron | 35.0% | |
AGAAAGAAGGATTACAAGGA+TGG | - | chr1_2:66092538-66092557 | Msa0085790:intron | 35.0% | |
CATGAAGTTGAGAGATGATT+TGG | - | chr1_2:66092594-66092613 | Msa0085790:intron | 35.0% | |
ACAATGAAGTAGCATCTTAC+CGG | + | chr1_2:66092636-66092655 | None:intergenic | 35.0% | |
AAAGATGATTCTCACTCAGT+TGG | - | chr1_2:66092689-66092708 | Msa0085790:intron | 35.0% | |
TTGCATAAGCAAACTGTTTG+GGG | + | chr1_2:66093325-66093344 | None:intergenic | 35.0% | |
ATGGATGTATGTGGAGAAAT+TGG | - | chr1_2:66093480-66093499 | Msa0085790:intron | 35.0% | |
TGGATGTATGTGGAGAAATT+GGG | - | chr1_2:66093481-66093500 | Msa0085790:intron | 35.0% | |
GTGATTACTGCATAACAGAA+AGG | + | chr1_2:66093538-66093557 | None:intergenic | 35.0% | |
TTCTGTTATGCAGTAATCAC+CGG | - | chr1_2:66093538-66093557 | Msa0085790:intron | 35.0% | |
TGTGATGTGGTTATAGTCTT+TGG | - | chr1_2:66092119-66092138 | Msa0085790:three_prime_UTR | 35.0% | |
GTGTTGAACACAAATGTTGA+TGG | - | chr1_2:66092174-66092193 | Msa0085790:exon | 35.0% | |
!!! | TTGTTGGATTTTTTTAGGGC+TGG | - | chr1_2:66092430-66092449 | Msa0085790:intron | 35.0% |
CATAATATTATCCAACTCCG+CGG | + | chr1_2:66092467-66092486 | None:intergenic | 35.0% | |
GAACAGAAAGAAGGATTACA+AGG | - | chr1_2:66092534-66092553 | Msa0085790:intron | 35.0% | |
AGAAAGAAGGATTACAAGGA+TGG | - | chr1_2:66092538-66092557 | Msa0085790:intron | 35.0% | |
CATGAAGTTGAGAGATGATT+TGG | - | chr1_2:66092594-66092613 | Msa0085790:intron | 35.0% | |
ACAATGAAGTAGCATCTTAC+CGG | + | chr1_2:66092636-66092655 | None:intergenic | 35.0% | |
AAAGATGATTCTCACTCAGT+TGG | - | chr1_2:66092689-66092708 | Msa0085790:intron | 35.0% | |
TTGCATAAGCAAACTGTTTG+GGG | + | chr1_2:66093325-66093344 | None:intergenic | 35.0% | |
ATGGATGTATGTGGAGAAAT+TGG | - | chr1_2:66093480-66093499 | Msa0085790:intron | 35.0% | |
TGGATGTATGTGGAGAAATT+GGG | - | chr1_2:66093481-66093500 | Msa0085790:intron | 35.0% | |
GTGATTACTGCATAACAGAA+AGG | + | chr1_2:66093538-66093557 | None:intergenic | 35.0% | |
TTCTGTTATGCAGTAATCAC+CGG | - | chr1_2:66093538-66093557 | Msa0085790:intron | 35.0% | |
! | ACGGAGGATTTTGTTGAAGA+GGG | + | chr1_2:66092014-66092033 | None:intergenic | 40.0% |
!! | CATTTTAACCTAACTGCGGA+CGG | + | chr1_2:66092033-66092052 | None:intergenic | 40.0% |
GATGTGGTTATAGTCTTTGG+TGG | - | chr1_2:66092122-66092141 | Msa0085790:three_prime_UTR | 40.0% | |
TTCGCAATGACCTCAATCAA+GGG | - | chr1_2:66092213-66092232 | Msa0085790:CDS | 40.0% | |
! | ATGACCTCAATCAAGGGTAT+TGG | - | chr1_2:66092219-66092238 | Msa0085790:CDS | 40.0% |
CTGATGTTGACATGAACAAG+AGG | - | chr1_2:66092274-66092293 | Msa0085790:intron | 40.0% | |
GTCAATTCAAGGTTCCAGAT+TGG | - | chr1_2:66092506-66092525 | Msa0085790:intron | 40.0% | |
!! | CAACTTCATGTCGAGTTGAT+TGG | + | chr1_2:66092584-66092603 | None:intergenic | 40.0% |
!! | CGTTCTAAAGCATCAAGCAA+TGG | + | chr1_2:66092805-66092824 | None:intergenic | 40.0% |
GTTTCCCATAAGCGGAAATA+CGG | - | chr1_2:66092976-66092995 | Msa0085790:intron | 40.0% | |
TTTCCCATAAGCGGAAATAC+GGG | - | chr1_2:66092977-66092996 | Msa0085790:intron | 40.0% | |
GGAAATACGGGCAATAGAAT+TGG | - | chr1_2:66092989-66093008 | Msa0085790:intron | 40.0% | |
GAATTGGACCAAAAAGTAGC+TGG | - | chr1_2:66093005-66093024 | Msa0085790:intron | 40.0% | |
!!! | GATAAGAGCCAGCTACTTTT+TGG | + | chr1_2:66093016-66093035 | None:intergenic | 40.0% |
ATAATGGCATATGCCCAGAT+AGG | + | chr1_2:66093368-66093387 | None:intergenic | 40.0% | |
TATGTGGAGAAATTGGGCAT+TGG | - | chr1_2:66093487-66093506 | Msa0085790:intron | 40.0% | |
TCTGTTATGCAGTAATCACC+GGG | - | chr1_2:66093539-66093558 | Msa0085790:intron | 40.0% | |
! | TTAAGCGTGATGTCCTGTTT+TGG | - | chr1_2:66093653-66093672 | Msa0085790:CDS | 40.0% |
! | CAAGTGCCTGATTAGTTGAA+TGG | - | chr1_2:66093791-66093810 | Msa0085790:exon | 40.0% |
CCAACACCATTCAACTAATC+AGG | + | chr1_2:66093800-66093819 | None:intergenic | 40.0% | |
! | CCTGATTAGTTGAATGGTGT+TGG | - | chr1_2:66093797-66093816 | Msa0085790:five_prime_UTR | 40.0% |
GAGCAAATTGGTCATGCTAA+AGG | + | chr1_2:66093836-66093855 | None:intergenic | 40.0% | |
! | ACGGAGGATTTTGTTGAAGA+GGG | + | chr1_2:66092014-66092033 | None:intergenic | 40.0% |
!! | CATTTTAACCTAACTGCGGA+CGG | + | chr1_2:66092033-66092052 | None:intergenic | 40.0% |
GATGTGGTTATAGTCTTTGG+TGG | - | chr1_2:66092122-66092141 | Msa0085790:three_prime_UTR | 40.0% | |
TTCGCAATGACCTCAATCAA+GGG | - | chr1_2:66092213-66092232 | Msa0085790:CDS | 40.0% | |
! | ATGACCTCAATCAAGGGTAT+TGG | - | chr1_2:66092219-66092238 | Msa0085790:CDS | 40.0% |
CTGATGTTGACATGAACAAG+AGG | - | chr1_2:66092274-66092293 | Msa0085790:intron | 40.0% | |
GTCAATTCAAGGTTCCAGAT+TGG | - | chr1_2:66092506-66092525 | Msa0085790:intron | 40.0% | |
!! | CAACTTCATGTCGAGTTGAT+TGG | + | chr1_2:66092584-66092603 | None:intergenic | 40.0% |
!! | CGTTCTAAAGCATCAAGCAA+TGG | + | chr1_2:66092805-66092824 | None:intergenic | 40.0% |
GTTTCCCATAAGCGGAAATA+CGG | - | chr1_2:66092976-66092995 | Msa0085790:intron | 40.0% | |
TTTCCCATAAGCGGAAATAC+GGG | - | chr1_2:66092977-66092996 | Msa0085790:intron | 40.0% | |
GGAAATACGGGCAATAGAAT+TGG | - | chr1_2:66092989-66093008 | Msa0085790:intron | 40.0% | |
GAATTGGACCAAAAAGTAGC+TGG | - | chr1_2:66093005-66093024 | Msa0085790:intron | 40.0% | |
!!! | GATAAGAGCCAGCTACTTTT+TGG | + | chr1_2:66093016-66093035 | None:intergenic | 40.0% |
ATAATGGCATATGCCCAGAT+AGG | + | chr1_2:66093368-66093387 | None:intergenic | 40.0% | |
TATGTGGAGAAATTGGGCAT+TGG | - | chr1_2:66093487-66093506 | Msa0085790:intron | 40.0% | |
TCTGTTATGCAGTAATCACC+GGG | - | chr1_2:66093539-66093558 | Msa0085790:intron | 40.0% | |
! | TTAAGCGTGATGTCCTGTTT+TGG | - | chr1_2:66093653-66093672 | Msa0085790:CDS | 40.0% |
! | CAAGTGCCTGATTAGTTGAA+TGG | - | chr1_2:66093791-66093810 | Msa0085790:exon | 40.0% |
CCAACACCATTCAACTAATC+AGG | + | chr1_2:66093800-66093819 | None:intergenic | 40.0% | |
! | CCTGATTAGTTGAATGGTGT+TGG | - | chr1_2:66093797-66093816 | Msa0085790:five_prime_UTR | 40.0% |
GAGCAAATTGGTCATGCTAA+AGG | + | chr1_2:66093836-66093855 | None:intergenic | 40.0% | |
GACATACAGACAGCCTTAAG+CGG | - | chr1_2:66091981-66092000 | Msa0085790:intron | 45.0% | |
! | CGGAGGATTTTGTTGAAGAG+GGG | + | chr1_2:66092013-66092032 | None:intergenic | 45.0% |
! | GACGGAGGATTTTGTTGAAG+AGG | + | chr1_2:66092015-66092034 | None:intergenic | 45.0% |
CGTCCGCAGTTAGGTTAAAA+TGG | - | chr1_2:66092031-66092050 | Msa0085790:three_prime_UTR | 45.0% | |
TGATTGAGGTCATTGCGAAC+TGG | + | chr1_2:66092212-66092231 | None:intergenic | 45.0% | |
GTTCGCAATGACCTCAATCA+AGG | - | chr1_2:66092212-66092231 | Msa0085790:CDS | 45.0% | |
CCTACCAATACCCTTGATTG+AGG | + | chr1_2:66092226-66092245 | None:intergenic | 45.0% | |
!! | CCTCAATCAAGGGTATTGGT+AGG | - | chr1_2:66092223-66092242 | Msa0085790:CDS | 45.0% |
TGCGAATCCTCGTCAATTCA+AGG | - | chr1_2:66092495-66092514 | Msa0085790:intron | 45.0% | |
! | TCTGGAACCTTGAATTGACG+AGG | + | chr1_2:66092505-66092524 | None:intergenic | 45.0% |
CAAGGATGGCAAATTCTCTC+AGG | - | chr1_2:66092552-66092571 | Msa0085790:intron | 45.0% | |
TGGAGAGACTCAAGAAGATC+CGG | - | chr1_2:66092614-66092633 | Msa0085790:intron | 45.0% | |
ACACGATCAAAGCAATGCAG+TGG | + | chr1_2:66092879-66092898 | None:intergenic | 45.0% | |
TTGCCCGTATTTCCGCTTAT+GGG | + | chr1_2:66092983-66093002 | None:intergenic | 45.0% | |
ATTGCCCGTATTTCCGCTTA+TGG | + | chr1_2:66092984-66093003 | None:intergenic | 45.0% | |
CTGTTATGCAGTAATCACCG+GGG | - | chr1_2:66093540-66093559 | Msa0085790:intron | 45.0% | |
GACATACAGACAGCCTTAAG+CGG | - | chr1_2:66091981-66092000 | Msa0085790:intron | 45.0% | |
! | CGGAGGATTTTGTTGAAGAG+GGG | + | chr1_2:66092013-66092032 | None:intergenic | 45.0% |
! | GACGGAGGATTTTGTTGAAG+AGG | + | chr1_2:66092015-66092034 | None:intergenic | 45.0% |
CGTCCGCAGTTAGGTTAAAA+TGG | - | chr1_2:66092031-66092050 | Msa0085790:three_prime_UTR | 45.0% | |
TGATTGAGGTCATTGCGAAC+TGG | + | chr1_2:66092212-66092231 | None:intergenic | 45.0% | |
GTTCGCAATGACCTCAATCA+AGG | - | chr1_2:66092212-66092231 | Msa0085790:CDS | 45.0% | |
CCTACCAATACCCTTGATTG+AGG | + | chr1_2:66092226-66092245 | None:intergenic | 45.0% | |
!! | CCTCAATCAAGGGTATTGGT+AGG | - | chr1_2:66092223-66092242 | Msa0085790:CDS | 45.0% |
TGCGAATCCTCGTCAATTCA+AGG | - | chr1_2:66092495-66092514 | Msa0085790:intron | 45.0% | |
! | TCTGGAACCTTGAATTGACG+AGG | + | chr1_2:66092505-66092524 | None:intergenic | 45.0% |
CAAGGATGGCAAATTCTCTC+AGG | - | chr1_2:66092552-66092571 | Msa0085790:intron | 45.0% | |
TGGAGAGACTCAAGAAGATC+CGG | - | chr1_2:66092614-66092633 | Msa0085790:intron | 45.0% | |
ACACGATCAAAGCAATGCAG+TGG | + | chr1_2:66092879-66092898 | None:intergenic | 45.0% | |
TTGCCCGTATTTCCGCTTAT+GGG | + | chr1_2:66092983-66093002 | None:intergenic | 45.0% | |
ATTGCCCGTATTTCCGCTTA+TGG | + | chr1_2:66092984-66093003 | None:intergenic | 45.0% | |
CTGTTATGCAGTAATCACCG+GGG | - | chr1_2:66093540-66093559 | Msa0085790:intron | 45.0% | |
! | AGAGGGGTAATTGCCGCTTA+AGG | + | chr1_2:66091997-66092016 | None:intergenic | 50.0% |
AAAATCCTCCGTCCGCAGTT+AGG | - | chr1_2:66092022-66092041 | Msa0085790:intron | 50.0% | |
TTTAACCTAACTGCGGACGG+AGG | + | chr1_2:66092030-66092049 | None:intergenic | 50.0% | |
CGATCAAAGCAATGCAGTGG+TGG | + | chr1_2:66092876-66092895 | None:intergenic | 50.0% | |
!! | TGGAGAAATTGGGCATTGGC+TGG | - | chr1_2:66093491-66093510 | Msa0085790:intron | 50.0% |
TATGCTGACCACGAACACGA+AGG | + | chr1_2:66093584-66093603 | None:intergenic | 50.0% | |
GGTCAGCATACCAAGACTAC+AGG | - | chr1_2:66093594-66093613 | Msa0085790:CDS | 50.0% | |
! | AGAGGGGTAATTGCCGCTTA+AGG | + | chr1_2:66091997-66092016 | None:intergenic | 50.0% |
AAAATCCTCCGTCCGCAGTT+AGG | - | chr1_2:66092022-66092041 | Msa0085790:intron | 50.0% | |
TTTAACCTAACTGCGGACGG+AGG | + | chr1_2:66092030-66092049 | None:intergenic | 50.0% | |
CGATCAAAGCAATGCAGTGG+TGG | + | chr1_2:66092876-66092895 | None:intergenic | 50.0% | |
!! | TGGAGAAATTGGGCATTGGC+TGG | - | chr1_2:66093491-66093510 | Msa0085790:intron | 50.0% |
TATGCTGACCACGAACACGA+AGG | + | chr1_2:66093584-66093603 | None:intergenic | 50.0% | |
GGTCAGCATACCAAGACTAC+AGG | - | chr1_2:66093594-66093613 | Msa0085790:CDS | 50.0% | |
GGCTGTCTGTATGTCGCTCT+GGG | + | chr1_2:66091976-66091995 | None:intergenic | 55.0% | |
AGGCTGTCTGTATGTCGCTC+TGG | + | chr1_2:66091977-66091996 | None:intergenic | 55.0% | |
! | TGAATTGAGTGCCGCGGAGT+TGG | - | chr1_2:66092453-66092472 | Msa0085790:intron | 55.0% |
! | ATGCAGTGGTGGTGCATCAG+CGG | + | chr1_2:66092865-66092884 | None:intergenic | 55.0% |
! | ACCGGGGTTTGAGACACTAC+TGG | - | chr1_2:66093556-66093575 | Msa0085790:CDS | 55.0% |
CCCAGTAGTGTCTCAAACCC+CGG | + | chr1_2:66093560-66093579 | None:intergenic | 55.0% | |
! | CCGGGGTTTGAGACACTACT+GGG | - | chr1_2:66093557-66093576 | Msa0085790:CDS | 55.0% |
! | CGGGGTTTGAGACACTACTG+GGG | - | chr1_2:66093558-66093577 | Msa0085790:CDS | 55.0% |
ATACCAAGACTACAGGCCGC+AGG | - | chr1_2:66093601-66093620 | Msa0085790:CDS | 55.0% | |
TACCAAGACTACAGGCCGCA+GGG | - | chr1_2:66093602-66093621 | Msa0085790:CDS | 55.0% | |
CACCAACAGTCTTTCCCCTG+CGG | + | chr1_2:66093620-66093639 | None:intergenic | 55.0% | |
GGCTGTCTGTATGTCGCTCT+GGG | + | chr1_2:66091976-66091995 | None:intergenic | 55.0% | |
AGGCTGTCTGTATGTCGCTC+TGG | + | chr1_2:66091977-66091996 | None:intergenic | 55.0% | |
! | TGAATTGAGTGCCGCGGAGT+TGG | - | chr1_2:66092453-66092472 | Msa0085790:intron | 55.0% |
! | ATGCAGTGGTGGTGCATCAG+CGG | + | chr1_2:66092865-66092884 | None:intergenic | 55.0% |
! | ACCGGGGTTTGAGACACTAC+TGG | - | chr1_2:66093556-66093575 | Msa0085790:CDS | 55.0% |
CCCAGTAGTGTCTCAAACCC+CGG | + | chr1_2:66093560-66093579 | None:intergenic | 55.0% | |
! | CCGGGGTTTGAGACACTACT+GGG | - | chr1_2:66093557-66093576 | Msa0085790:CDS | 55.0% |
! | CGGGGTTTGAGACACTACTG+GGG | - | chr1_2:66093558-66093577 | Msa0085790:CDS | 55.0% |
ATACCAAGACTACAGGCCGC+AGG | - | chr1_2:66093601-66093620 | Msa0085790:CDS | 55.0% | |
TACCAAGACTACAGGCCGCA+GGG | - | chr1_2:66093602-66093621 | Msa0085790:CDS | 55.0% | |
CACCAACAGTCTTTCCCCTG+CGG | + | chr1_2:66093620-66093639 | None:intergenic | 55.0% | |
! | GGCTGGTGAATTGAGTGCCG+CGG | - | chr1_2:66092447-66092466 | Msa0085790:intron | 60.0% |
TACTGGGGCCTTCGTGTTCG+TGG | - | chr1_2:66093573-66093592 | Msa0085790:CDS | 60.0% | |
ACCAAGACTACAGGCCGCAG+GGG | - | chr1_2:66093603-66093622 | Msa0085790:CDS | 60.0% | |
! | GGCTGGTGAATTGAGTGCCG+CGG | - | chr1_2:66092447-66092466 | Msa0085790:intron | 60.0% |
TACTGGGGCCTTCGTGTTCG+TGG | - | chr1_2:66093573-66093592 | Msa0085790:CDS | 60.0% | |
ACCAAGACTACAGGCCGCAG+GGG | - | chr1_2:66093603-66093622 | Msa0085790:CDS | 60.0% | |
TCCCCTGCGGCCTGTAGTCT+TGG | + | chr1_2:66093607-66093626 | None:intergenic | 65.0% | |
GGCCGCAGGGGAAAGACTGT+TGG | - | chr1_2:66093615-66093634 | Msa0085790:CDS | 65.0% | |
TCCCCTGCGGCCTGTAGTCT+TGG | + | chr1_2:66093607-66093626 | None:intergenic | 65.0% | |
GGCCGCAGGGGAAAGACTGT+TGG | - | chr1_2:66093615-66093634 | Msa0085790:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 66091929 | 66093913 | 66091929 | ID=Msa0085790;Name=Msa0085790 |
chr1_2 | mRNA | 66091929 | 66093913 | 66091929 | ID=Msa0085790-mRNA-1;Parent=Msa0085790;Name=Msa0085790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|1|1|1|0.5|0.4|5|215|152 |
chr1_2 | exon | 66091929 | 66091981 | 66091929 | ID=Msa0085790-mRNA-1:exon:22396;Parent=Msa0085790-mRNA-1 |
chr1_2 | exon | 66092024 | 66092291 | 66092024 | ID=Msa0085790-mRNA-1:exon:22395;Parent=Msa0085790-mRNA-1 |
chr1_2 | exon | 66093207 | 66093395 | 66093207 | ID=Msa0085790-mRNA-1:exon:22394;Parent=Msa0085790-mRNA-1 |
chr1_2 | exon | 66093547 | 66093707 | 66093547 | ID=Msa0085790-mRNA-1:exon:22393;Parent=Msa0085790-mRNA-1 |
chr1_2 | exon | 66093790 | 66093913 | 66093790 | ID=Msa0085790-mRNA-1:exon:22392;Parent=Msa0085790-mRNA-1 |
chr1_2 | five_prime_UTR | 66093793 | 66093913 | 66093793 | ID=Msa0085790-mRNA-1:five_prime_utr;Parent=Msa0085790-mRNA-1 |
chr1_2 | CDS | 66093790 | 66093792 | 66093790 | ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1 |
chr1_2 | CDS | 66093547 | 66093707 | 66093547 | ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1 |
chr1_2 | CDS | 66093207 | 66093395 | 66093207 | ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1 |
chr1_2 | CDS | 66092186 | 66092291 | 66092186 | ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1 |
chr1_2 | three_prime_UTR | 66092024 | 66092185 | 66092024 | ID=Msa0085790-mRNA-1:three_prime_utr;Parent=Msa0085790-mRNA-1 |
chr1_2 | three_prime_UTR | 66091929 | 66091981 | 66091929 | ID=Msa0085790-mRNA-1:three_prime_utr;Parent=Msa0085790-mRNA-1 |
Gene Sequence |
Protein sequence |