AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085790 MtrunA17_Chr1g0201521 100.000 152 0 0 1 152 1 152 5.12e-112 314
Msa0085790 MtrunA17_Chr1g0201481 100.000 152 0 0 1 152 1 152 5.12e-112 314
Msa0085790 MtrunA17_Chr6g0467091 98.684 152 2 0 1 152 1 152 5.31e-111 311
Msa0085790 MtrunA17_Chr5g0409931 94.286 105 6 0 36 140 12 116 2.72e-70 207
Msa0085790 MtrunA17_Chr5g0409851 93.258 89 6 0 52 140 1 89 3.41e-58 176
Msa0085790 MtrunA17_Chr5g0409921 94.382 89 5 0 52 140 1 89 4.30e-58 175
Msa0085790 MtrunA17_Chr5g0409871 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa0085790 MtrunA17_Chr5g0409881 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa0085790 MtrunA17_Chr5g0409861 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa0085790 MtrunA17_Chr5g0409911 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa0085790 MtrunA17_Chr5g0409891 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa0085790 MtrunA17_Chr5g0409901 95.714 70 3 0 52 121 1 70 1.12e-43 138
Msa0085790 MtrunA17_Chr4g0006461 76.562 64 14 1 67 129 9 72 3.44e-28 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085790 AT4G09800.1 92.763 152 11 0 1 152 1 152 1.97e-105 298
Msa0085790 AT1G34030.1 92.763 152 11 0 1 152 1 152 1.97e-105 298
Msa0085790 AT1G22780.1 92.763 152 11 0 1 152 1 152 1.97e-105 298

Find 50 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAGTTGAGAGATGATT+TGG 0.279609 1_2:-66093226 Msa0085790:CDS
CAACTTCATGTCGAGTTGAT+TGG 0.309472 1_2:+66093239 None:intergenic
CGTCCGCAGTTAGGTTAAAA+TGG 0.345502 1_2:-66093789 Msa0085790:intron
AGGCTGTCTGTATGTCGCTC+TGG 0.346942 1_2:+66093846 None:intergenic
TTAAGCGTGATGTCCTGTTT+TGG 0.377769 1_2:-66092167 Msa0085790:exon
TCCCCTGCGGCCTGTAGTCT+TGG 0.394682 1_2:+66092216 None:intergenic
CCAACACCATTCAACTAATC+AGG 0.407303 1_2:+66092023 None:intergenic
TTTCATATACCGAGTTTGTA+TGG 0.407920 1_2:-66092101 Msa0085790:three_prime_UTR
AAAATCCTCCGTCCGCAGTT+AGG 0.418193 1_2:-66093798 Msa0085790:five_prime_UTR
AATCATCTAATCTCCAAAAC+AGG 0.431449 1_2:+66092154 None:intergenic
TTCTGTTATGCAGTAATCAC+CGG 0.438670 1_2:-66092282 Msa0085790:intron
GGCTGTCTGTATGTCGCTCT+GGG 0.453352 1_2:+66093847 None:intergenic
GTGTTGAACACAAATGTTGA+TGG 0.456259 1_2:-66093646 Msa0085790:CDS
TGCGAATCCTCGTCAATTCA+AGG 0.456574 1_2:-66093325 Msa0085790:CDS
TACTGGGGCCTTCGTGTTCG+TGG 0.457512 1_2:-66092247 Msa0085790:CDS
TGATTGAGGTCATTGCGAAC+TGG 0.463060 1_2:+66093611 None:intergenic
AGAGGGGTAATTGCCGCTTA+AGG 0.471260 1_2:+66093826 None:intergenic
CCGGGGTTTGAGACACTACT+GGG 0.483703 1_2:-66092263 Msa0085790:CDS
GTTCGCAATGACCTCAATCA+AGG 0.484324 1_2:-66093608 Msa0085790:CDS
CAAGGATGGCAAATTCTCTC+AGG 0.484690 1_2:-66093268 Msa0085790:CDS
ACCGGGGTTTGAGACACTAC+TGG 0.492415 1_2:-66092264 Msa0085790:CDS
ATGACCTCAATCAAGGGTAT+TGG 0.493197 1_2:-66093601 Msa0085790:CDS
GTCAATTCAAGGTTCCAGAT+TGG 0.495981 1_2:-66093314 Msa0085790:CDS
CAAGTGCCTGATTAGTTGAA+TGG 0.501343 1_2:-66092029 Msa0085790:three_prime_UTR
TGGAGAGACTCAAGAAGATC+CGG 0.512286 1_2:-66093206 Msa0085790:intron
CCCAGTAGTGTCTCAAACCC+CGG 0.525189 1_2:+66092263 None:intergenic
GAACAGAAAGAAGGATTACA+AGG 0.525479 1_2:-66093286 Msa0085790:CDS
GATGTGGTTATAGTCTTTGG+TGG 0.556464 1_2:-66093698 Msa0085790:intron
TGAATTGAGTGCCGCGGAGT+TGG 0.561127 1_2:-66093367 Msa0085790:CDS
CCTGATTAGTTGAATGGTGT+TGG 0.562322 1_2:-66092023 Msa0085790:intron
AGAAAGAAGGATTACAAGGA+TGG 0.565673 1_2:-66093282 Msa0085790:CDS
GGTCAGCATACCAAGACTAC+AGG 0.569467 1_2:-66092226 Msa0085790:CDS
TACCAAGACTACAGGCCGCA+GGG 0.580402 1_2:-66092218 Msa0085790:CDS
CCTACCAATACCCTTGATTG+AGG 0.590405 1_2:+66093597 None:intergenic
ATACCAAGACTACAGGCCGC+AGG 0.594524 1_2:-66092219 Msa0085790:CDS
TCTGTTATGCAGTAATCACC+GGG 0.594587 1_2:-66092281 Msa0085790:intron
CTGATGTTGACATGAACAAG+AGG 0.595729 1_2:-66093546 Msa0085790:intron
GGCCGCAGGGGAAAGACTGT+TGG 0.608087 1_2:-66092205 Msa0085790:CDS
GACATACAGACAGCCTTAAG+CGG 0.615799 1_2:-66093839 Msa0085790:five_prime_UTR
TTCGCAATGACCTCAATCAA+GGG 0.622158 1_2:-66093607 Msa0085790:CDS
GGCTGGTGAATTGAGTGCCG+CGG 0.628828 1_2:-66093373 Msa0085790:CDS
CCTCAATCAAGGGTATTGGT+AGG 0.631523 1_2:-66093597 Msa0085790:CDS
TTTAACCTAACTGCGGACGG+AGG 0.653943 1_2:+66093793 None:intergenic
ACCAAGACTACAGGCCGCAG+GGG 0.654823 1_2:-66092217 Msa0085790:CDS
TCTGGAACCTTGAATTGACG+AGG 0.669518 1_2:+66093318 None:intergenic
CATAATATTATCCAACTCCG+CGG 0.714027 1_2:+66093356 None:intergenic
CTGTTATGCAGTAATCACCG+GGG 0.730953 1_2:-66092280 Msa0085790:intron
TATGCTGACCACGAACACGA+AGG 0.739225 1_2:+66092239 None:intergenic
CACCAACAGTCTTTCCCCTG+CGG 0.740988 1_2:+66092203 None:intergenic
CGGGGTTTGAGACACTACTG+GGG 0.755067 1_2:-66092262 Msa0085790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTGTTAAAATTAA+TGG - chr1_2:66092334-66092353 Msa0085790:intron 10.0%
!!! TTTTTGTTGTTAAAATTAAT+GGG - chr1_2:66092335-66092354 Msa0085790:intron 10.0%
!! AATTCAATTCAATAATATAA+TGG - chr1_2:66093461-66093480 Msa0085790:intron 10.0%
!!! ATTTTTGTTGTTAAAATTAA+TGG - chr1_2:66092334-66092353 Msa0085790:intron 10.0%
!!! TTTTTGTTGTTAAAATTAAT+GGG - chr1_2:66092335-66092354 Msa0085790:intron 10.0%
!! AATTCAATTCAATAATATAA+TGG - chr1_2:66093461-66093480 Msa0085790:intron 10.0%
!!! TTTTGATATTATTGTTGAAA+TGG - chr1_2:66092397-66092416 Msa0085790:intron 15.0%
!! TTTGATATTATTGTTGAAAT+GGG - chr1_2:66092398-66092417 Msa0085790:intron 15.0%
!! TTTGAGTAGTAAAAAAATAA+TGG + chr1_2:66093384-66093403 None:intergenic 15.0%
!!! TTTTGATATTATTGTTGAAA+TGG - chr1_2:66092397-66092416 Msa0085790:intron 15.0%
!! TTTGATATTATTGTTGAAAT+GGG - chr1_2:66092398-66092417 Msa0085790:intron 15.0%
!! TTTGAGTAGTAAAAAAATAA+TGG + chr1_2:66093384-66093403 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTGTGATG+TGG - chr1_2:66092106-66092125 Msa0085790:three_prime_UTR 20.0%
!!! ATTTTAAAAGTGAGCAAAAT+CGG + chr1_2:66092309-66092328 None:intergenic 20.0%
!!! TTTTGTTGTTGGATTTTTTT+AGG - chr1_2:66092425-66092444 Msa0085790:intron 20.0%
!!! TTTGTTGTTGGATTTTTTTA+GGG - chr1_2:66092426-66092445 Msa0085790:intron 20.0%
!! AATACATAGTAAAAAATGCA+AGG + chr1_2:66093089-66093108 None:intergenic 20.0%
!! TATGATATTCATGTTGATAT+AGG - chr1_2:66093125-66093144 Msa0085790:intron 20.0%
!! ATGATATTCATGTTGATATA+GGG - chr1_2:66093126-66093145 Msa0085790:intron 20.0%
!!! CAATAAAATTTTAGACTGTT+TGG - chr1_2:66093176-66093195 Msa0085790:intron 20.0%
!! AATAAGATGAAAACAGTTTA+TGG - chr1_2:66093272-66093291 Msa0085790:CDS 20.0%
!! TAGTTTAAATAAATCCTATC+TGG - chr1_2:66093351-66093370 Msa0085790:CDS 20.0%
!! AGTTTAAATAAATCCTATCT+GGG - chr1_2:66093352-66093371 Msa0085790:CDS 20.0%
!! TTCTGTATTCAATAATACAA+TGG - chr1_2:66093404-66093423 Msa0085790:intron 20.0%
!!! AATAATATAATGGATGTATG+TGG - chr1_2:66093471-66093490 Msa0085790:intron 20.0%
!! AATTAAAAACCATACAAACT+CGG + chr1_2:66093731-66093750 None:intergenic 20.0%
!!! CAGATTTTTTAACTTTCTAA+TGG - chr1_2:66093858-66093877 Msa0085790:five_prime_UTR 20.0%
!!! GTTTTTTTTTTTTTGTGATG+TGG - chr1_2:66092106-66092125 Msa0085790:three_prime_UTR 20.0%
!!! ATTTTAAAAGTGAGCAAAAT+CGG + chr1_2:66092309-66092328 None:intergenic 20.0%
!!! TTTTGTTGTTGGATTTTTTT+AGG - chr1_2:66092425-66092444 Msa0085790:intron 20.0%
!!! TTTGTTGTTGGATTTTTTTA+GGG - chr1_2:66092426-66092445 Msa0085790:intron 20.0%
!! AATACATAGTAAAAAATGCA+AGG + chr1_2:66093089-66093108 None:intergenic 20.0%
!! TATGATATTCATGTTGATAT+AGG - chr1_2:66093125-66093144 Msa0085790:intron 20.0%
!! ATGATATTCATGTTGATATA+GGG - chr1_2:66093126-66093145 Msa0085790:intron 20.0%
!!! CAATAAAATTTTAGACTGTT+TGG - chr1_2:66093176-66093195 Msa0085790:intron 20.0%
!! AATAAGATGAAAACAGTTTA+TGG - chr1_2:66093272-66093291 Msa0085790:CDS 20.0%
!! TAGTTTAAATAAATCCTATC+TGG - chr1_2:66093351-66093370 Msa0085790:CDS 20.0%
!! AGTTTAAATAAATCCTATCT+GGG - chr1_2:66093352-66093371 Msa0085790:CDS 20.0%
!! TTCTGTATTCAATAATACAA+TGG - chr1_2:66093404-66093423 Msa0085790:intron 20.0%
!!! AATAATATAATGGATGTATG+TGG - chr1_2:66093471-66093490 Msa0085790:intron 20.0%
!! AATTAAAAACCATACAAACT+CGG + chr1_2:66093731-66093750 None:intergenic 20.0%
!!! CAGATTTTTTAACTTTCTAA+TGG - chr1_2:66093858-66093877 Msa0085790:five_prime_UTR 20.0%
!! AGAATGCGAAAGAAATTTTA+GGG + chr1_2:66091947-66091966 None:intergenic 25.0%
! ATCATCTTTATAGTTAACAC+AGG + chr1_2:66092678-66092697 None:intergenic 25.0%
!!! ACATTTTAACACTACTATGT+AGG - chr1_2:66092735-66092754 Msa0085790:intron 25.0%
! TTAGAACGAGAATTAACTAT+TGG - chr1_2:66092817-66092836 Msa0085790:intron 25.0%
! GAAAACAAAATACAAGTCAT+TGG + chr1_2:66093038-66093057 None:intergenic 25.0%
!!! ACTTGTATTTTGTTTTCTCT+TGG - chr1_2:66093041-66093060 Msa0085790:intron 25.0%
! ACAGTTTAATTAAGCACTTA+TGG - chr1_2:66093203-66093222 Msa0085790:intron 25.0%
! AATAATACAATGGATGTATG+TGG - chr1_2:66093414-66093433 Msa0085790:intron 25.0%
!!! TGGTTTTTAATTGAATGCAT+TGG - chr1_2:66093739-66093758 Msa0085790:intron 25.0%
!! TTGGCAATTTCAATTTTGTT+TGG - chr1_2:66093758-66093777 Msa0085790:intron 25.0%
! AAAAAATCTGAAGAGCAAAT+TGG + chr1_2:66093848-66093867 None:intergenic 25.0%
!! AGAATGCGAAAGAAATTTTA+GGG + chr1_2:66091947-66091966 None:intergenic 25.0%
! ATCATCTTTATAGTTAACAC+AGG + chr1_2:66092678-66092697 None:intergenic 25.0%
!!! ACATTTTAACACTACTATGT+AGG - chr1_2:66092735-66092754 Msa0085790:intron 25.0%
! TTAGAACGAGAATTAACTAT+TGG - chr1_2:66092817-66092836 Msa0085790:intron 25.0%
! GAAAACAAAATACAAGTCAT+TGG + chr1_2:66093038-66093057 None:intergenic 25.0%
!!! ACTTGTATTTTGTTTTCTCT+TGG - chr1_2:66093041-66093060 Msa0085790:intron 25.0%
! ACAGTTTAATTAAGCACTTA+TGG - chr1_2:66093203-66093222 Msa0085790:intron 25.0%
! AATAATACAATGGATGTATG+TGG - chr1_2:66093414-66093433 Msa0085790:intron 25.0%
!!! TGGTTTTTAATTGAATGCAT+TGG - chr1_2:66093739-66093758 Msa0085790:intron 25.0%
!! TTGGCAATTTCAATTTTGTT+TGG - chr1_2:66093758-66093777 Msa0085790:intron 25.0%
! AAAAAATCTGAAGAGCAAAT+TGG + chr1_2:66093848-66093867 None:intergenic 25.0%
!!! ATTTTAGGGTTTGTGAGAAT+GGG + chr1_2:66091933-66091952 None:intergenic 30.0%
!!! AATTTTAGGGTTTGTGAGAA+TGG + chr1_2:66091934-66091953 None:intergenic 30.0%
! CAGAATGCGAAAGAAATTTT+AGG + chr1_2:66091948-66091967 None:intergenic 30.0%
!! ATACCATTTTAACCTAACTG+CGG + chr1_2:66092037-66092056 None:intergenic 30.0%
!!! AAATGGGTTGTTTTTGTTGT+TGG - chr1_2:66092414-66092433 Msa0085790:intron 30.0%
TTTCTGTTCAAAAACCAATC+TGG + chr1_2:66092523-66092542 None:intergenic 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG - chr1_2:66092525-66092544 Msa0085790:intron 30.0%
!!! CTCAGTTGGTTTTTTAGTAT+AGG - chr1_2:66092703-66092722 Msa0085790:intron 30.0%
AGATGTAGTAGTAAGATGAT+AGG - chr1_2:66092771-66092790 Msa0085790:intron 30.0%
AGTGTTTGAAAATAGAACAG+TGG - chr1_2:66092921-66092940 Msa0085790:intron 30.0%
GTGTTTGAAAATAGAACAGT+GGG - chr1_2:66092922-66092941 Msa0085790:intron 30.0%
AATCAAATGTTTCCCATAAG+CGG - chr1_2:66092968-66092987 Msa0085790:intron 30.0%
ATGAAAACAGTTTATGGACA+TGG - chr1_2:66093278-66093297 Msa0085790:CDS 30.0%
TTTGCATAAGCAAACTGTTT+GGG + chr1_2:66093326-66093345 None:intergenic 30.0%
ATTTGCATAAGCAAACTGTT+TGG + chr1_2:66093327-66093346 None:intergenic 30.0%
AATCATCTAATCTCCAAAAC+AGG + chr1_2:66093669-66093688 None:intergenic 30.0%
! TTGGAGATTAGATGATTTTG+AGG - chr1_2:66093672-66093691 Msa0085790:CDS 30.0%
TTTCATATACCGAGTTTGTA+TGG - chr1_2:66093719-66093738 Msa0085790:intron 30.0%
!!! ATTTTAGGGTTTGTGAGAAT+GGG + chr1_2:66091933-66091952 None:intergenic 30.0%
!!! AATTTTAGGGTTTGTGAGAA+TGG + chr1_2:66091934-66091953 None:intergenic 30.0%
! CAGAATGCGAAAGAAATTTT+AGG + chr1_2:66091948-66091967 None:intergenic 30.0%
!! ATACCATTTTAACCTAACTG+CGG + chr1_2:66092037-66092056 None:intergenic 30.0%
!!! AAATGGGTTGTTTTTGTTGT+TGG - chr1_2:66092414-66092433 Msa0085790:intron 30.0%
TTTCTGTTCAAAAACCAATC+TGG + chr1_2:66092523-66092542 None:intergenic 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG - chr1_2:66092525-66092544 Msa0085790:intron 30.0%
!!! CTCAGTTGGTTTTTTAGTAT+AGG - chr1_2:66092703-66092722 Msa0085790:intron 30.0%
AGATGTAGTAGTAAGATGAT+AGG - chr1_2:66092771-66092790 Msa0085790:intron 30.0%
AGTGTTTGAAAATAGAACAG+TGG - chr1_2:66092921-66092940 Msa0085790:intron 30.0%
GTGTTTGAAAATAGAACAGT+GGG - chr1_2:66092922-66092941 Msa0085790:intron 30.0%
AATCAAATGTTTCCCATAAG+CGG - chr1_2:66092968-66092987 Msa0085790:intron 30.0%
ATGAAAACAGTTTATGGACA+TGG - chr1_2:66093278-66093297 Msa0085790:CDS 30.0%
TTTGCATAAGCAAACTGTTT+GGG + chr1_2:66093326-66093345 None:intergenic 30.0%
ATTTGCATAAGCAAACTGTT+TGG + chr1_2:66093327-66093346 None:intergenic 30.0%
AATCATCTAATCTCCAAAAC+AGG + chr1_2:66093669-66093688 None:intergenic 30.0%
! TTGGAGATTAGATGATTTTG+AGG - chr1_2:66093672-66093691 Msa0085790:CDS 30.0%
TTTCATATACCGAGTTTGTA+TGG - chr1_2:66093719-66093738 Msa0085790:intron 30.0%
TGTGATGTGGTTATAGTCTT+TGG - chr1_2:66092119-66092138 Msa0085790:three_prime_UTR 35.0%
GTGTTGAACACAAATGTTGA+TGG - chr1_2:66092174-66092193 Msa0085790:exon 35.0%
!!! TTGTTGGATTTTTTTAGGGC+TGG - chr1_2:66092430-66092449 Msa0085790:intron 35.0%
CATAATATTATCCAACTCCG+CGG + chr1_2:66092467-66092486 None:intergenic 35.0%
GAACAGAAAGAAGGATTACA+AGG - chr1_2:66092534-66092553 Msa0085790:intron 35.0%
AGAAAGAAGGATTACAAGGA+TGG - chr1_2:66092538-66092557 Msa0085790:intron 35.0%
CATGAAGTTGAGAGATGATT+TGG - chr1_2:66092594-66092613 Msa0085790:intron 35.0%
ACAATGAAGTAGCATCTTAC+CGG + chr1_2:66092636-66092655 None:intergenic 35.0%
AAAGATGATTCTCACTCAGT+TGG - chr1_2:66092689-66092708 Msa0085790:intron 35.0%
TTGCATAAGCAAACTGTTTG+GGG + chr1_2:66093325-66093344 None:intergenic 35.0%
ATGGATGTATGTGGAGAAAT+TGG - chr1_2:66093480-66093499 Msa0085790:intron 35.0%
TGGATGTATGTGGAGAAATT+GGG - chr1_2:66093481-66093500 Msa0085790:intron 35.0%
GTGATTACTGCATAACAGAA+AGG + chr1_2:66093538-66093557 None:intergenic 35.0%
TTCTGTTATGCAGTAATCAC+CGG - chr1_2:66093538-66093557 Msa0085790:intron 35.0%
TGTGATGTGGTTATAGTCTT+TGG - chr1_2:66092119-66092138 Msa0085790:three_prime_UTR 35.0%
GTGTTGAACACAAATGTTGA+TGG - chr1_2:66092174-66092193 Msa0085790:exon 35.0%
!!! TTGTTGGATTTTTTTAGGGC+TGG - chr1_2:66092430-66092449 Msa0085790:intron 35.0%
CATAATATTATCCAACTCCG+CGG + chr1_2:66092467-66092486 None:intergenic 35.0%
GAACAGAAAGAAGGATTACA+AGG - chr1_2:66092534-66092553 Msa0085790:intron 35.0%
AGAAAGAAGGATTACAAGGA+TGG - chr1_2:66092538-66092557 Msa0085790:intron 35.0%
CATGAAGTTGAGAGATGATT+TGG - chr1_2:66092594-66092613 Msa0085790:intron 35.0%
ACAATGAAGTAGCATCTTAC+CGG + chr1_2:66092636-66092655 None:intergenic 35.0%
AAAGATGATTCTCACTCAGT+TGG - chr1_2:66092689-66092708 Msa0085790:intron 35.0%
TTGCATAAGCAAACTGTTTG+GGG + chr1_2:66093325-66093344 None:intergenic 35.0%
ATGGATGTATGTGGAGAAAT+TGG - chr1_2:66093480-66093499 Msa0085790:intron 35.0%
TGGATGTATGTGGAGAAATT+GGG - chr1_2:66093481-66093500 Msa0085790:intron 35.0%
GTGATTACTGCATAACAGAA+AGG + chr1_2:66093538-66093557 None:intergenic 35.0%
TTCTGTTATGCAGTAATCAC+CGG - chr1_2:66093538-66093557 Msa0085790:intron 35.0%
! ACGGAGGATTTTGTTGAAGA+GGG + chr1_2:66092014-66092033 None:intergenic 40.0%
!! CATTTTAACCTAACTGCGGA+CGG + chr1_2:66092033-66092052 None:intergenic 40.0%
GATGTGGTTATAGTCTTTGG+TGG - chr1_2:66092122-66092141 Msa0085790:three_prime_UTR 40.0%
TTCGCAATGACCTCAATCAA+GGG - chr1_2:66092213-66092232 Msa0085790:CDS 40.0%
! ATGACCTCAATCAAGGGTAT+TGG - chr1_2:66092219-66092238 Msa0085790:CDS 40.0%
CTGATGTTGACATGAACAAG+AGG - chr1_2:66092274-66092293 Msa0085790:intron 40.0%
GTCAATTCAAGGTTCCAGAT+TGG - chr1_2:66092506-66092525 Msa0085790:intron 40.0%
!! CAACTTCATGTCGAGTTGAT+TGG + chr1_2:66092584-66092603 None:intergenic 40.0%
!! CGTTCTAAAGCATCAAGCAA+TGG + chr1_2:66092805-66092824 None:intergenic 40.0%
GTTTCCCATAAGCGGAAATA+CGG - chr1_2:66092976-66092995 Msa0085790:intron 40.0%
TTTCCCATAAGCGGAAATAC+GGG - chr1_2:66092977-66092996 Msa0085790:intron 40.0%
GGAAATACGGGCAATAGAAT+TGG - chr1_2:66092989-66093008 Msa0085790:intron 40.0%
GAATTGGACCAAAAAGTAGC+TGG - chr1_2:66093005-66093024 Msa0085790:intron 40.0%
!!! GATAAGAGCCAGCTACTTTT+TGG + chr1_2:66093016-66093035 None:intergenic 40.0%
ATAATGGCATATGCCCAGAT+AGG + chr1_2:66093368-66093387 None:intergenic 40.0%
TATGTGGAGAAATTGGGCAT+TGG - chr1_2:66093487-66093506 Msa0085790:intron 40.0%
TCTGTTATGCAGTAATCACC+GGG - chr1_2:66093539-66093558 Msa0085790:intron 40.0%
! TTAAGCGTGATGTCCTGTTT+TGG - chr1_2:66093653-66093672 Msa0085790:CDS 40.0%
! CAAGTGCCTGATTAGTTGAA+TGG - chr1_2:66093791-66093810 Msa0085790:exon 40.0%
CCAACACCATTCAACTAATC+AGG + chr1_2:66093800-66093819 None:intergenic 40.0%
! CCTGATTAGTTGAATGGTGT+TGG - chr1_2:66093797-66093816 Msa0085790:five_prime_UTR 40.0%
GAGCAAATTGGTCATGCTAA+AGG + chr1_2:66093836-66093855 None:intergenic 40.0%
! ACGGAGGATTTTGTTGAAGA+GGG + chr1_2:66092014-66092033 None:intergenic 40.0%
!! CATTTTAACCTAACTGCGGA+CGG + chr1_2:66092033-66092052 None:intergenic 40.0%
GATGTGGTTATAGTCTTTGG+TGG - chr1_2:66092122-66092141 Msa0085790:three_prime_UTR 40.0%
TTCGCAATGACCTCAATCAA+GGG - chr1_2:66092213-66092232 Msa0085790:CDS 40.0%
! ATGACCTCAATCAAGGGTAT+TGG - chr1_2:66092219-66092238 Msa0085790:CDS 40.0%
CTGATGTTGACATGAACAAG+AGG - chr1_2:66092274-66092293 Msa0085790:intron 40.0%
GTCAATTCAAGGTTCCAGAT+TGG - chr1_2:66092506-66092525 Msa0085790:intron 40.0%
!! CAACTTCATGTCGAGTTGAT+TGG + chr1_2:66092584-66092603 None:intergenic 40.0%
!! CGTTCTAAAGCATCAAGCAA+TGG + chr1_2:66092805-66092824 None:intergenic 40.0%
GTTTCCCATAAGCGGAAATA+CGG - chr1_2:66092976-66092995 Msa0085790:intron 40.0%
TTTCCCATAAGCGGAAATAC+GGG - chr1_2:66092977-66092996 Msa0085790:intron 40.0%
GGAAATACGGGCAATAGAAT+TGG - chr1_2:66092989-66093008 Msa0085790:intron 40.0%
GAATTGGACCAAAAAGTAGC+TGG - chr1_2:66093005-66093024 Msa0085790:intron 40.0%
!!! GATAAGAGCCAGCTACTTTT+TGG + chr1_2:66093016-66093035 None:intergenic 40.0%
ATAATGGCATATGCCCAGAT+AGG + chr1_2:66093368-66093387 None:intergenic 40.0%
TATGTGGAGAAATTGGGCAT+TGG - chr1_2:66093487-66093506 Msa0085790:intron 40.0%
TCTGTTATGCAGTAATCACC+GGG - chr1_2:66093539-66093558 Msa0085790:intron 40.0%
! TTAAGCGTGATGTCCTGTTT+TGG - chr1_2:66093653-66093672 Msa0085790:CDS 40.0%
! CAAGTGCCTGATTAGTTGAA+TGG - chr1_2:66093791-66093810 Msa0085790:exon 40.0%
CCAACACCATTCAACTAATC+AGG + chr1_2:66093800-66093819 None:intergenic 40.0%
! CCTGATTAGTTGAATGGTGT+TGG - chr1_2:66093797-66093816 Msa0085790:five_prime_UTR 40.0%
GAGCAAATTGGTCATGCTAA+AGG + chr1_2:66093836-66093855 None:intergenic 40.0%
GACATACAGACAGCCTTAAG+CGG - chr1_2:66091981-66092000 Msa0085790:intron 45.0%
! CGGAGGATTTTGTTGAAGAG+GGG + chr1_2:66092013-66092032 None:intergenic 45.0%
! GACGGAGGATTTTGTTGAAG+AGG + chr1_2:66092015-66092034 None:intergenic 45.0%
CGTCCGCAGTTAGGTTAAAA+TGG - chr1_2:66092031-66092050 Msa0085790:three_prime_UTR 45.0%
TGATTGAGGTCATTGCGAAC+TGG + chr1_2:66092212-66092231 None:intergenic 45.0%
GTTCGCAATGACCTCAATCA+AGG - chr1_2:66092212-66092231 Msa0085790:CDS 45.0%
CCTACCAATACCCTTGATTG+AGG + chr1_2:66092226-66092245 None:intergenic 45.0%
!! CCTCAATCAAGGGTATTGGT+AGG - chr1_2:66092223-66092242 Msa0085790:CDS 45.0%
TGCGAATCCTCGTCAATTCA+AGG - chr1_2:66092495-66092514 Msa0085790:intron 45.0%
! TCTGGAACCTTGAATTGACG+AGG + chr1_2:66092505-66092524 None:intergenic 45.0%
CAAGGATGGCAAATTCTCTC+AGG - chr1_2:66092552-66092571 Msa0085790:intron 45.0%
TGGAGAGACTCAAGAAGATC+CGG - chr1_2:66092614-66092633 Msa0085790:intron 45.0%
ACACGATCAAAGCAATGCAG+TGG + chr1_2:66092879-66092898 None:intergenic 45.0%
TTGCCCGTATTTCCGCTTAT+GGG + chr1_2:66092983-66093002 None:intergenic 45.0%
ATTGCCCGTATTTCCGCTTA+TGG + chr1_2:66092984-66093003 None:intergenic 45.0%
CTGTTATGCAGTAATCACCG+GGG - chr1_2:66093540-66093559 Msa0085790:intron 45.0%
GACATACAGACAGCCTTAAG+CGG - chr1_2:66091981-66092000 Msa0085790:intron 45.0%
! CGGAGGATTTTGTTGAAGAG+GGG + chr1_2:66092013-66092032 None:intergenic 45.0%
! GACGGAGGATTTTGTTGAAG+AGG + chr1_2:66092015-66092034 None:intergenic 45.0%
CGTCCGCAGTTAGGTTAAAA+TGG - chr1_2:66092031-66092050 Msa0085790:three_prime_UTR 45.0%
TGATTGAGGTCATTGCGAAC+TGG + chr1_2:66092212-66092231 None:intergenic 45.0%
GTTCGCAATGACCTCAATCA+AGG - chr1_2:66092212-66092231 Msa0085790:CDS 45.0%
CCTACCAATACCCTTGATTG+AGG + chr1_2:66092226-66092245 None:intergenic 45.0%
!! CCTCAATCAAGGGTATTGGT+AGG - chr1_2:66092223-66092242 Msa0085790:CDS 45.0%
TGCGAATCCTCGTCAATTCA+AGG - chr1_2:66092495-66092514 Msa0085790:intron 45.0%
! TCTGGAACCTTGAATTGACG+AGG + chr1_2:66092505-66092524 None:intergenic 45.0%
CAAGGATGGCAAATTCTCTC+AGG - chr1_2:66092552-66092571 Msa0085790:intron 45.0%
TGGAGAGACTCAAGAAGATC+CGG - chr1_2:66092614-66092633 Msa0085790:intron 45.0%
ACACGATCAAAGCAATGCAG+TGG + chr1_2:66092879-66092898 None:intergenic 45.0%
TTGCCCGTATTTCCGCTTAT+GGG + chr1_2:66092983-66093002 None:intergenic 45.0%
ATTGCCCGTATTTCCGCTTA+TGG + chr1_2:66092984-66093003 None:intergenic 45.0%
CTGTTATGCAGTAATCACCG+GGG - chr1_2:66093540-66093559 Msa0085790:intron 45.0%
! AGAGGGGTAATTGCCGCTTA+AGG + chr1_2:66091997-66092016 None:intergenic 50.0%
AAAATCCTCCGTCCGCAGTT+AGG - chr1_2:66092022-66092041 Msa0085790:intron 50.0%
TTTAACCTAACTGCGGACGG+AGG + chr1_2:66092030-66092049 None:intergenic 50.0%
CGATCAAAGCAATGCAGTGG+TGG + chr1_2:66092876-66092895 None:intergenic 50.0%
!! TGGAGAAATTGGGCATTGGC+TGG - chr1_2:66093491-66093510 Msa0085790:intron 50.0%
TATGCTGACCACGAACACGA+AGG + chr1_2:66093584-66093603 None:intergenic 50.0%
GGTCAGCATACCAAGACTAC+AGG - chr1_2:66093594-66093613 Msa0085790:CDS 50.0%
! AGAGGGGTAATTGCCGCTTA+AGG + chr1_2:66091997-66092016 None:intergenic 50.0%
AAAATCCTCCGTCCGCAGTT+AGG - chr1_2:66092022-66092041 Msa0085790:intron 50.0%
TTTAACCTAACTGCGGACGG+AGG + chr1_2:66092030-66092049 None:intergenic 50.0%
CGATCAAAGCAATGCAGTGG+TGG + chr1_2:66092876-66092895 None:intergenic 50.0%
!! TGGAGAAATTGGGCATTGGC+TGG - chr1_2:66093491-66093510 Msa0085790:intron 50.0%
TATGCTGACCACGAACACGA+AGG + chr1_2:66093584-66093603 None:intergenic 50.0%
GGTCAGCATACCAAGACTAC+AGG - chr1_2:66093594-66093613 Msa0085790:CDS 50.0%
GGCTGTCTGTATGTCGCTCT+GGG + chr1_2:66091976-66091995 None:intergenic 55.0%
AGGCTGTCTGTATGTCGCTC+TGG + chr1_2:66091977-66091996 None:intergenic 55.0%
! TGAATTGAGTGCCGCGGAGT+TGG - chr1_2:66092453-66092472 Msa0085790:intron 55.0%
! ATGCAGTGGTGGTGCATCAG+CGG + chr1_2:66092865-66092884 None:intergenic 55.0%
! ACCGGGGTTTGAGACACTAC+TGG - chr1_2:66093556-66093575 Msa0085790:CDS 55.0%
CCCAGTAGTGTCTCAAACCC+CGG + chr1_2:66093560-66093579 None:intergenic 55.0%
! CCGGGGTTTGAGACACTACT+GGG - chr1_2:66093557-66093576 Msa0085790:CDS 55.0%
! CGGGGTTTGAGACACTACTG+GGG - chr1_2:66093558-66093577 Msa0085790:CDS 55.0%
ATACCAAGACTACAGGCCGC+AGG - chr1_2:66093601-66093620 Msa0085790:CDS 55.0%
TACCAAGACTACAGGCCGCA+GGG - chr1_2:66093602-66093621 Msa0085790:CDS 55.0%
CACCAACAGTCTTTCCCCTG+CGG + chr1_2:66093620-66093639 None:intergenic 55.0%
GGCTGTCTGTATGTCGCTCT+GGG + chr1_2:66091976-66091995 None:intergenic 55.0%
AGGCTGTCTGTATGTCGCTC+TGG + chr1_2:66091977-66091996 None:intergenic 55.0%
! TGAATTGAGTGCCGCGGAGT+TGG - chr1_2:66092453-66092472 Msa0085790:intron 55.0%
! ATGCAGTGGTGGTGCATCAG+CGG + chr1_2:66092865-66092884 None:intergenic 55.0%
! ACCGGGGTTTGAGACACTAC+TGG - chr1_2:66093556-66093575 Msa0085790:CDS 55.0%
CCCAGTAGTGTCTCAAACCC+CGG + chr1_2:66093560-66093579 None:intergenic 55.0%
! CCGGGGTTTGAGACACTACT+GGG - chr1_2:66093557-66093576 Msa0085790:CDS 55.0%
! CGGGGTTTGAGACACTACTG+GGG - chr1_2:66093558-66093577 Msa0085790:CDS 55.0%
ATACCAAGACTACAGGCCGC+AGG - chr1_2:66093601-66093620 Msa0085790:CDS 55.0%
TACCAAGACTACAGGCCGCA+GGG - chr1_2:66093602-66093621 Msa0085790:CDS 55.0%
CACCAACAGTCTTTCCCCTG+CGG + chr1_2:66093620-66093639 None:intergenic 55.0%
! GGCTGGTGAATTGAGTGCCG+CGG - chr1_2:66092447-66092466 Msa0085790:intron 60.0%
TACTGGGGCCTTCGTGTTCG+TGG - chr1_2:66093573-66093592 Msa0085790:CDS 60.0%
ACCAAGACTACAGGCCGCAG+GGG - chr1_2:66093603-66093622 Msa0085790:CDS 60.0%
! GGCTGGTGAATTGAGTGCCG+CGG - chr1_2:66092447-66092466 Msa0085790:intron 60.0%
TACTGGGGCCTTCGTGTTCG+TGG - chr1_2:66093573-66093592 Msa0085790:CDS 60.0%
ACCAAGACTACAGGCCGCAG+GGG - chr1_2:66093603-66093622 Msa0085790:CDS 60.0%
TCCCCTGCGGCCTGTAGTCT+TGG + chr1_2:66093607-66093626 None:intergenic 65.0%
GGCCGCAGGGGAAAGACTGT+TGG - chr1_2:66093615-66093634 Msa0085790:CDS 65.0%
TCCCCTGCGGCCTGTAGTCT+TGG + chr1_2:66093607-66093626 None:intergenic 65.0%
GGCCGCAGGGGAAAGACTGT+TGG - chr1_2:66093615-66093634 Msa0085790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 66091929 66093913 66091929 ID=Msa0085790;Name=Msa0085790
chr1_2 mRNA 66091929 66093913 66091929 ID=Msa0085790-mRNA-1;Parent=Msa0085790;Name=Msa0085790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|1|1|1|0.5|0.4|5|215|152
chr1_2 exon 66091929 66091981 66091929 ID=Msa0085790-mRNA-1:exon:22396;Parent=Msa0085790-mRNA-1
chr1_2 exon 66092024 66092291 66092024 ID=Msa0085790-mRNA-1:exon:22395;Parent=Msa0085790-mRNA-1
chr1_2 exon 66093207 66093395 66093207 ID=Msa0085790-mRNA-1:exon:22394;Parent=Msa0085790-mRNA-1
chr1_2 exon 66093547 66093707 66093547 ID=Msa0085790-mRNA-1:exon:22393;Parent=Msa0085790-mRNA-1
chr1_2 exon 66093790 66093913 66093790 ID=Msa0085790-mRNA-1:exon:22392;Parent=Msa0085790-mRNA-1
chr1_2 five_prime_UTR 66093793 66093913 66093793 ID=Msa0085790-mRNA-1:five_prime_utr;Parent=Msa0085790-mRNA-1
chr1_2 CDS 66093790 66093792 66093790 ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1
chr1_2 CDS 66093547 66093707 66093547 ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1
chr1_2 CDS 66093207 66093395 66093207 ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1
chr1_2 CDS 66092186 66092291 66092186 ID=Msa0085790-mRNA-1:cds;Parent=Msa0085790-mRNA-1
chr1_2 three_prime_UTR 66092024 66092185 66092024 ID=Msa0085790-mRNA-1:three_prime_utr;Parent=Msa0085790-mRNA-1
chr1_2 three_prime_UTR 66091929 66091981 66091929 ID=Msa0085790-mRNA-1:three_prime_utr;Parent=Msa0085790-mRNA-1
Gene Sequence

>Msa0085790

ATGTCTTTGGTGGCGAACGAAGAATTTCAGCACATTCTGCGTGTGTTGAACACAAATGTTGATGGAAAGCAGAAGATCCAGTTCGCAATGACCTCAATCAAGGGTATTGGTAGGAGATTCGCTAACATCTGCTGTAAGAAAGCTGATGTTGACATGAACAAGAGGGCTGGTGAATTGAGTGCCGCGGAGTTGGATAATATTATGACAGTTGTTGCGAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAGGTTGTCTCCAATCAACTCGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAGATCCGTAATCACCGGGGTTTGAGACACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACAGGCCGCAGGGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAA

Protein sequence

>Msa0085790

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*