Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085970 | AES62372.1 | 93.705 | 826 | 46 | 4 | 1 | 820 | 1 | 826 | 0.0 | 1412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085970 | sp|Q10251|IF2P_SCHPO | 55.840 | 625 | 261 | 6 | 206 | 819 | 458 | 1078 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085970 | G7ICZ8 | 93.705 | 826 | 46 | 4 | 1 | 820 | 1 | 826 | 0.0 | 1412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085970 | Msa0354800 | -0.810388 | 1.181729e-50 | -8.615850e-47 |
| Msa0085970 | Msa0530770 | 0.819265 | 1.272022e-52 | -8.615850e-47 |
| Msa0085970 | Msa0845370 | 0.811470 | 6.889109e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085970 | MtrunA17_Chr1g0201991 | 93.705 | 826 | 46 | 4 | 1 | 820 | 1 | 826 | 0.0 | 1412 |
| Msa0085970 | MtrunA17_Chr1g0202021 | 88.456 | 641 | 74 | 0 | 180 | 820 | 701 | 1341 | 0.0 | 1172 |
| Msa0085970 | MtrunA17_Chr4g0000221 | 63.578 | 464 | 132 | 9 | 191 | 648 | 1 | 433 | 0.0 | 558 |
| Msa0085970 | MtrunA17_Chr4g0000991 | 62.562 | 406 | 113 | 5 | 181 | 585 | 29 | 396 | 3.70e-175 | 510 |
| Msa0085970 | MtrunA17_Chr7g0264901 | 56.805 | 338 | 141 | 2 | 218 | 554 | 25 | 358 | 1.90e-125 | 382 |
| Msa0085970 | MtrunA17_Chr7g0264471 | 44.951 | 307 | 150 | 6 | 228 | 525 | 54 | 350 | 1.45e-81 | 265 |
| Msa0085970 | MtrunA17_Chr4g0004141 | 58.755 | 257 | 67 | 5 | 542 | 791 | 216 | 440 | 1.08e-80 | 266 |
| Msa0085970 | MtrunA17_Chr4g0004141 | 51.542 | 227 | 76 | 5 | 229 | 452 | 13 | 208 | 1.94e-65 | 225 |
| Msa0085970 | MtrunA17_Chr7g0263861 | 67.669 | 133 | 40 | 1 | 587 | 719 | 144 | 273 | 2.83e-52 | 183 |
| Msa0085970 | MtrunA17_Chr2g0312621 | 27.564 | 468 | 258 | 17 | 229 | 675 | 495 | 902 | 2.00e-26 | 116 |
| Msa0085970 | MtrunA17_Chr5g0412261 | 26.371 | 474 | 250 | 17 | 229 | 679 | 200 | 597 | 7.31e-21 | 98.2 |
| Msa0085970 | MtrunA17_Chr4g0038951 | 79.630 | 54 | 5 | 1 | 460 | 513 | 33 | 80 | 4.46e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085970 | AT1G76810.1 | 79.270 | 603 | 119 | 2 | 223 | 820 | 693 | 1294 | 0.0 | 993 |
| Msa0085970 | AT1G76720.1 | 77.138 | 573 | 119 | 3 | 227 | 798 | 625 | 1186 | 0.0 | 911 |
| Msa0085970 | AT1G76720.2 | 77.138 | 573 | 119 | 3 | 227 | 798 | 658 | 1219 | 0.0 | 910 |
| Msa0085970 | AT1G21160.1 | 71.167 | 600 | 166 | 3 | 227 | 820 | 494 | 1092 | 0.0 | 892 |
| Msa0085970 | AT2G27700.1 | 70.694 | 447 | 129 | 2 | 228 | 673 | 34 | 479 | 0.0 | 653 |
| Msa0085970 | AT2G27700.2 | 70.536 | 448 | 129 | 3 | 228 | 673 | 34 | 480 | 0.0 | 648 |
| Msa0085970 | AT1G17220.1 | 25.486 | 514 | 269 | 19 | 229 | 702 | 500 | 939 | 1.80e-25 | 114 |
| Msa0085970 | AT4G11160.3 | 25.823 | 395 | 227 | 10 | 102 | 492 | 102 | 434 | 3.41e-23 | 105 |
| Msa0085970 | AT4G11160.1 | 23.401 | 594 | 342 | 16 | 102 | 666 | 100 | 609 | 9.73e-23 | 104 |
| Msa0085970 | AT4G11160.2 | 23.401 | 594 | 342 | 16 | 102 | 666 | 102 | 611 | 1.04e-22 | 104 |
Find 193 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCAATATCAATGAAATTT+TGG | 0.103189 | 1_2:+66391781 | None:intergenic |
| CAAGAAGGATCCGATTATTT+TGG | 0.118638 | 1_2:-66392030 | Msa0085970:CDS |
| TCGTTTATTTGATCAATTTA+AGG | 0.129474 | 1_2:-66392150 | Msa0085970:CDS |
| CAGTTTATCGTTAATCTTAA+TGG | 0.137152 | 1_2:+66391749 | None:intergenic |
| AAAATGTTTGGGAGACATTT+TGG | 0.148071 | 1_2:-66391557 | Msa0085970:CDS |
| TTATAGGTTGACAGGCTTTA+TGG | 0.181446 | 1_2:-66394601 | Msa0085970:intron |
| TGGCTCATTGGAATCATTAT+TGG | 0.188516 | 1_2:-66392381 | Msa0085970:CDS |
| TAAGGAACTTGCAGATAAAT+TGG | 0.192473 | 1_2:-66392204 | Msa0085970:CDS |
| GCTTCTTGGTCATGGTCTTT+TGG | 0.196066 | 1_2:+66393386 | None:intergenic |
| TCTATGTGATATTGCAATTT+TGG | 0.205839 | 1_2:-66394803 | Msa0085970:CDS |
| GTTTCGGCAGTTTCAATTTC+CGG | 0.216856 | 1_2:+66396125 | None:intergenic |
| TTGGGAGTTGATATCATTAA+AGG | 0.223441 | 1_2:-66392011 | Msa0085970:CDS |
| TTCTTGTTGAAGACACAATT+TGG | 0.236922 | 1_2:+66392047 | None:intergenic |
| TTCAATTTCCGGTGTACTTC+CGG | 0.240486 | 1_2:+66396136 | None:intergenic |
| TTCGCTGTATGTAAGCTTCT+TGG | 0.250724 | 1_2:+66393372 | None:intergenic |
| AAGAAGAAGAGGAGCGAATA+AGG | 0.262198 | 1_2:-66395959 | Msa0085970:CDS |
| AGATCAACTGCATACCTTAA+TGG | 0.269189 | 1_2:+66391695 | None:intergenic |
| CACTTTCTTCCCAACTCCTT+TGG | 0.274039 | 1_2:+66396073 | None:intergenic |
| CTTCCCAACTCCTTTGGTCT+TGG | 0.281337 | 1_2:+66396079 | None:intergenic |
| ACCCAAAATTTCATTGATAT+TGG | 0.282610 | 1_2:-66391783 | Msa0085970:CDS |
| TTCCGTTGGTTTACTTGTTT+CGG | 0.293336 | 1_2:+66396109 | None:intergenic |
| CAATAGATCTCCGTGAAATA+TGG | 0.308897 | 1_2:+66391513 | None:intergenic |
| AACTTAAGGTCTCGGGGTTC+AGG | 0.309817 | 1_2:-66394826 | Msa0085970:CDS |
| GGTTTACATGGCCAACATTA+AGG | 0.313530 | 1_2:-66392129 | Msa0085970:CDS |
| AATTACCTTATTGCACTTGT+AGG | 0.314542 | 1_2:+66394312 | None:intergenic |
| AGAAAGTGCCAAAGCATGTT+AGG | 0.321392 | 1_2:-66396058 | Msa0085970:CDS |
| TTCTCTTGGTCAGGTATTGA+TGG | 0.322652 | 1_2:+66396326 | None:intergenic |
| TGCTGGCAAAACCAAACTTC+TGG | 0.325455 | 1_2:-66395028 | Msa0085970:CDS |
| GAGGAACAGCAGAAAATGTT+TGG | 0.326899 | 1_2:-66391569 | Msa0085970:CDS |
| AAGAAGAGGAAGAGAATCTA+AGG | 0.328780 | 1_2:-66395983 | Msa0085970:CDS |
| TGCTTCTCCCTAACATGCTT+TGG | 0.329260 | 1_2:+66396050 | None:intergenic |
| AACCGGCTGCTGTGCCTTCT+AGG | 0.336109 | 1_2:-66395104 | Msa0085970:CDS |
| CTAGATTGTTACTCAGTTCA+AGG | 0.346510 | 1_2:-66394400 | Msa0085970:intron |
| TCGAATACAATCCAGAAGTT+TGG | 0.347194 | 1_2:+66395017 | None:intergenic |
| ACGAGAGTATTCTACTATAT+TGG | 0.350410 | 1_2:-66392255 | Msa0085970:CDS |
| TTTCTCCTCAACCACAGCTT+TGG | 0.355829 | 1_2:+66395146 | None:intergenic |
| GGGGATCAAATAGTTGTATC+TGG | 0.361083 | 1_2:-66393158 | Msa0085970:CDS |
| TTAACACGAAGTTCCTTCAT+TGG | 0.364194 | 1_2:+66393012 | None:intergenic |
| GAGAGAACAAGCAGAGCGTT+TGG | 0.367665 | 1_2:-66395853 | Msa0085970:CDS |
| GGCATCTACACTTGGCTCAT+TGG | 0.372059 | 1_2:-66392393 | Msa0085970:CDS |
| CATTAAGATTAACGATAAAC+TGG | 0.373675 | 1_2:-66391748 | Msa0085970:CDS |
| TGGCTACCAGTGTACCGTTT+TGG | 0.376164 | 1_2:-66393249 | Msa0085970:intron |
| CATCTTGGTTTGCAGATTGT+AGG | 0.376752 | 1_2:-66391602 | Msa0085970:intron |
| GGCGGTATTACTCAACAAAT+TGG | 0.379113 | 1_2:-66394967 | Msa0085970:CDS |
| TGCTTCATTGCTTTACGAAT+TGG | 0.379344 | 1_2:+66394556 | None:intergenic |
| AGGGCAGCAAGTAGCCATTA+AGG | 0.383463 | 1_2:-66391709 | Msa0085970:intron |
| TGTTACTCAGTTCAAGGAAC+AGG | 0.383804 | 1_2:-66394394 | Msa0085970:CDS |
| ATCTGCAAGTTCCTTAGCTT+CGG | 0.383828 | 1_2:+66392211 | None:intergenic |
| ACTAATAGTAATAACATATC+CGG | 0.388139 | 1_2:+66393418 | None:intergenic |
| GGACTTGAACATGCTGTTGC+TGG | 0.388929 | 1_2:-66392536 | Msa0085970:CDS |
| CCGTCGTCGTCGTTGATAAC+CGG | 0.389811 | 1_2:+66396290 | None:intergenic |
| GCTCGAATTGTGGTAACAAT+TGG | 0.397760 | 1_2:+66393051 | None:intergenic |
| ATCACATCCTTCTTATGTAC+AGG | 0.398036 | 1_2:+66392305 | None:intergenic |
| CATTCAATAACTTAAGGTCT+CGG | 0.401476 | 1_2:-66394834 | Msa0085970:CDS |
| CAGCTTTGATTTCTTTGTGA+TGG | 0.402103 | 1_2:+66392709 | None:intergenic |
| CTGGTTGATCGTGCGACAAA+AGG | 0.406074 | 1_2:-66391729 | Msa0085970:CDS |
| ATTCAATAACTTAAGGTCTC+GGG | 0.406183 | 1_2:-66394833 | Msa0085970:CDS |
| ATATCAACTCCCAAAATAAT+CGG | 0.414496 | 1_2:+66392020 | None:intergenic |
| TCAGGTGGCTCTGATGGCTT+TGG | 0.415532 | 1_2:-66396252 | Msa0085970:CDS |
| TATTGAATGATTCGTGGCCT+GGG | 0.415936 | 1_2:+66394848 | None:intergenic |
| TGACCCATGATGCAGCAAAT+TGG | 0.416869 | 1_2:+66395057 | None:intergenic |
| GGTGAAGCCTAATGATGATT+TGG | 0.424032 | 1_2:-66392498 | Msa0085970:CDS |
| CAGAGCGTTTGGAGGCAGTC+AGG | 0.426044 | 1_2:-66395842 | Msa0085970:CDS |
| AAATAAACGATAAATGATAT+CGG | 0.428213 | 1_2:+66392163 | None:intergenic |
| TGTTATTACTATTAGTTAAG+TGG | 0.429253 | 1_2:-66393411 | Msa0085970:CDS |
| GATGCAACGCTGGAAGTTCC+CGG | 0.429533 | 1_2:-66394889 | Msa0085970:CDS |
| GTCACCAATTTGCTGCATCA+TGG | 0.430083 | 1_2:-66395061 | Msa0085970:CDS |
| ATATATTCCAAATCATCATT+AGG | 0.430681 | 1_2:+66392491 | None:intergenic |
| TTATTGAATGATTCGTGGCC+TGG | 0.431057 | 1_2:+66394847 | None:intergenic |
| CCAACAGGAATATTCACTTC+TGG | 0.431562 | 1_2:+66392344 | None:intergenic |
| GAGCCTTGTTCGAATTCTCT+TGG | 0.435148 | 1_2:+66396312 | None:intergenic |
| TTGTGCCTACAAGTGCAATA+AGG | 0.435172 | 1_2:-66394317 | Msa0085970:intron |
| ACGAATCATTCAATAACTTA+AGG | 0.435917 | 1_2:-66394840 | Msa0085970:CDS |
| AGAGGAGCGAATAAGGTTAG+AGG | 0.438913 | 1_2:-66395952 | Msa0085970:CDS |
| TTACTATCACTCGGCCTAGA+AGG | 0.441105 | 1_2:+66395090 | None:intergenic |
| TGGTGAGGGCGTTTGTGTCC+AGG | 0.441481 | 1_2:-66392414 | Msa0085970:CDS |
| TTGGAAATCAAGGTTATTGA+AGG | 0.441813 | 1_2:-66393230 | Msa0085970:CDS |
| AATGAAGGAACTTCGTGTTA+AGG | 0.444264 | 1_2:-66393010 | Msa0085970:intron |
| AATAACCTTGATTTCCAAAA+CGG | 0.449489 | 1_2:+66393235 | None:intergenic |
| GCAGCTGACTCCACAGTCTC+AGG | 0.451105 | 1_2:+66396221 | None:intergenic |
| CGGAACTCAGGTGGCTCTGA+TGG | 0.451658 | 1_2:-66396258 | Msa0085970:CDS |
| TTGAGTGACTCAATAGTTTG+TGG | 0.452247 | 1_2:+66394754 | None:intergenic |
| TTGTTCGAATTCTCTTGGTC+AGG | 0.452607 | 1_2:+66396317 | None:intergenic |
| TTGCAACATTATAGGTTGAC+AGG | 0.454624 | 1_2:-66394609 | Msa0085970:intron |
| TTAAGTTATTGAATGATTCG+TGG | 0.464936 | 1_2:+66394842 | None:intergenic |
| AACTTGTAAGCCATATTTCA+CGG | 0.465418 | 1_2:-66391523 | Msa0085970:CDS |
| AGGTTGACAGGCTTTATGGC+TGG | 0.471848 | 1_2:-66394597 | Msa0085970:CDS |
| GCTGGAAGTTCCCGGTCTAC+TGG | 0.472307 | 1_2:-66394881 | Msa0085970:CDS |
| TGATCAATTTAAGGTTTACA+TGG | 0.479615 | 1_2:-66392141 | Msa0085970:CDS |
| AGGAGGCAGCTTTGTAATGC+TGG | 0.481400 | 1_2:-66395822 | Msa0085970:intron |
| GAGTATCAAGATCGCTGCCC+AGG | 0.482041 | 1_2:-66392682 | Msa0085970:intron |
| AGGAACAGCAGAAAATGTTT+GGG | 0.482802 | 1_2:-66391568 | Msa0085970:CDS |
| TCTTCAGTTTCTTCAGCCAC+AGG | 0.487474 | 1_2:+66395180 | None:intergenic |
| AAACTTCTGGATTGTATTCG+AGG | 0.490812 | 1_2:-66395015 | Msa0085970:CDS |
| ATTCCAAGACCAAAGGAGTT+GGG | 0.490910 | 1_2:-66396082 | Msa0085970:CDS |
| AAAAGAGAAGAGAAAGAAGA+AGG | 0.490936 | 1_2:-66396195 | Msa0085970:CDS |
| CATAGGCCCTGTACATAAGA+AGG | 0.496249 | 1_2:-66392312 | Msa0085970:CDS |
| GTTAATGGCGTTCTTCATGA+AGG | 0.497468 | 1_2:-66393179 | Msa0085970:CDS |
| TGGTTGATCGTGCGACAAAA+GGG | 0.498227 | 1_2:-66391728 | Msa0085970:CDS |
| AAGGAACTTGCAGATAAATT+GGG | 0.498327 | 1_2:-66392203 | Msa0085970:CDS |
| TCACCAATTTGCTGCATCAT+GGG | 0.498425 | 1_2:-66395060 | Msa0085970:CDS |
| GTATGTAAGCTTCTTGGTCA+TGG | 0.499658 | 1_2:+66393378 | None:intergenic |
| ATTTAATATTTCAGTGGTGA+AGG | 0.501321 | 1_2:-66393445 | Msa0085970:intron |
| TGCTGGTGCTAGTTTATATG+TGG | 0.503991 | 1_2:-66392519 | Msa0085970:CDS |
| AATAGTTGTATCTGGAATGC+AGG | 0.504285 | 1_2:-66393150 | Msa0085970:intron |
| CTATCACGTATGTTCTCAGC+AGG | 0.506491 | 1_2:+66394931 | None:intergenic |
| CGGTCTTGAGAAGGATTGAC+AGG | 0.508679 | 1_2:-66392439 | Msa0085970:CDS |
| CGAAGTTCCTTCATTGGATG+AGG | 0.509629 | 1_2:+66393018 | None:intergenic |
| GGCCTAGAAGGCACAGCAGC+CGG | 0.511011 | 1_2:+66395102 | None:intergenic |
| GATTCCAAGACCAAAGGAGT+TGG | 0.511194 | 1_2:-66396083 | Msa0085970:CDS |
| ATGAGCCAAGTGTAGATGCC+TGG | 0.511848 | 1_2:+66392396 | None:intergenic |
| CCTATGTTTATAGCACCAAC+AGG | 0.511860 | 1_2:+66392329 | None:intergenic |
| AGAAGAGCACGATACACAAC+CGG | 0.514683 | 1_2:-66395121 | Msa0085970:CDS |
| GATGTAGGATGATCTATTGA+TGG | 0.515186 | 1_2:-66391354 | Msa0085970:intron |
| ACTTGAGAGACTCGCGGAAG+AGG | 0.515248 | 1_2:-66395928 | Msa0085970:CDS |
| GGAAGAGAAACCTGAGACTG+TGG | 0.517432 | 1_2:-66396231 | Msa0085970:CDS |
| GAAGAGAAAGAAGAAGGAGA+AGG | 0.521034 | 1_2:-66396189 | Msa0085970:CDS |
| ATTGACACCTCATCCAATGA+AGG | 0.523422 | 1_2:-66393025 | Msa0085970:CDS |
| ATCAAGGTTATTGAAGGTCA+TGG | 0.524017 | 1_2:-66393224 | Msa0085970:CDS |
| TACATACAGCGAAGAAGTGC+AGG | 0.526176 | 1_2:-66393362 | Msa0085970:intron |
| TGTGTCCAGGCATCTACACT+TGG | 0.528409 | 1_2:-66392401 | Msa0085970:CDS |
| CCTGTTGGTGCTATAAACAT+AGG | 0.530052 | 1_2:-66392329 | Msa0085970:CDS |
| ACTGAAAGCTGATGCAACGC+TGG | 0.538088 | 1_2:-66394899 | Msa0085970:CDS |
| GGTATGATCTTCAGAACGCA+TGG | 0.538592 | 1_2:+66392068 | None:intergenic |
| CAAAGTCACCTCCGAAGCTA+AGG | 0.539441 | 1_2:-66392222 | Msa0085970:CDS |
| TTAATGGCGTTCTTCATGAA+GGG | 0.541424 | 1_2:-66393178 | Msa0085970:CDS |
| AAAGCAGCTTCTGCAGCCGC+CGG | 0.551172 | 1_2:-66396155 | Msa0085970:CDS |
| GAACATACGTGATAGAACTA+AGG | 0.552399 | 1_2:-66394923 | Msa0085970:CDS |
| ACATGCCAAAGCTGTGGTTG+AGG | 0.552407 | 1_2:-66395151 | Msa0085970:CDS |
| GGTATCAATAACCAGTAGAC+CGG | 0.552679 | 1_2:+66394870 | None:intergenic |
| GGAAGTGACTCGAAGAAAAG+AGG | 0.552866 | 1_2:-66396024 | Msa0085970:CDS |
| AGGATTGACAGGAGTGGTGA+GGG | 0.553096 | 1_2:-66392428 | Msa0085970:CDS |
| GACCGACTCCACGTCTTCCA+AGG | 0.553623 | 1_2:+66392457 | None:intergenic |
| CTAATAGTAATAACATATCC+GGG | 0.555274 | 1_2:+66393419 | None:intergenic |
| ATCATGGGTCATGTGGATGC+TGG | 0.555490 | 1_2:-66395045 | Msa0085970:CDS |
| ACATAAGAAGGATGTGATGA+AGG | 0.556894 | 1_2:-66392300 | Msa0085970:CDS |
| AGAGAATTCGAACAAGGCTC+CGG | 0.557700 | 1_2:-66396309 | Msa0085970:CDS |
| AATGTTCAAGAAGGTGAGGC+TGG | 0.558221 | 1_2:-66394988 | Msa0085970:CDS |
| TTTCAGTGGTGAAGGAATCC+CGG | 0.561971 | 1_2:-66393437 | Msa0085970:intron |
| GAAAGTGCCAAAGCATGTTA+GGG | 0.562605 | 1_2:-66396057 | Msa0085970:CDS |
| AGAGGCTAAACATAGAAAGA+AGG | 0.563561 | 1_2:-66395910 | Msa0085970:CDS |
| AGCTGCTGGTGAACTTGAAG+AGG | 0.563741 | 1_2:-66391322 | Msa0085970:CDS |
| GTTACTCAGTTCAAGGAACA+GGG | 0.565333 | 1_2:-66394393 | Msa0085970:CDS |
| TGATGCAGCAAATTGGTGAC+CGG | 0.571615 | 1_2:+66395064 | None:intergenic |
| AGAACAAGCAGAGCGTTTGG+AGG | 0.572202 | 1_2:-66395850 | Msa0085970:CDS |
| CAAACATATGTTTAAAACAA+AGG | 0.574693 | 1_2:-66394518 | Msa0085970:CDS |
| GAATCTAAGGAAAGAAGAAG+AGG | 0.575379 | 1_2:-66395970 | Msa0085970:CDS |
| TGCAAGTTCCTTAGCTTCGG+AGG | 0.578140 | 1_2:+66392214 | None:intergenic |
| ACGTGGAGTCGGTCTTGAGA+AGG | 0.581440 | 1_2:-66392448 | Msa0085970:CDS |
| TGCAGCCGCCGGAAGTACAC+CGG | 0.585088 | 1_2:-66396144 | Msa0085970:CDS |
| AAAAGCAGCCTTGGAAGACG+TGG | 0.589202 | 1_2:-66392465 | Msa0085970:CDS |
| TTCAATAACTTAAGGTCTCG+GGG | 0.589671 | 1_2:-66394832 | Msa0085970:CDS |
| TTGGTTGTTGACATTATGCA+TGG | 0.590813 | 1_2:-66394784 | Msa0085970:CDS |
| CGGATATTCTATCGGAACTC+AGG | 0.592294 | 1_2:-66396270 | Msa0085970:CDS |
| CGAGGTACAAATGTTCAAGA+AGG | 0.594803 | 1_2:-66394997 | Msa0085970:CDS |
| AAGGATTGACAGGAGTGGTG+AGG | 0.596920 | 1_2:-66392429 | Msa0085970:CDS |
| AGCGTTTGGAGGCAGTCAGG+AGG | 0.597271 | 1_2:-66395839 | Msa0085970:CDS |
| GGCCGAGTGATAGTAACCTC+CGG | 0.597454 | 1_2:-66395083 | Msa0085970:CDS |
| TAATGGCGTTCTTCATGAAG+GGG | 0.600695 | 1_2:-66393177 | Msa0085970:CDS |
| TTGCTGCATCATGGGTCATG+TGG | 0.605907 | 1_2:-66395052 | Msa0085970:CDS |
| AGCCTTGGAAGACGTGGAGT+CGG | 0.606985 | 1_2:-66392459 | Msa0085970:CDS |
| TCACATCCTTCTTATGTACA+GGG | 0.607095 | 1_2:+66392306 | None:intergenic |
| CCAGAAGTGAATATTCCTGT+TGG | 0.610022 | 1_2:-66392344 | Msa0085970:CDS |
| TACAAATGTTCAAGAAGGTG+AGG | 0.614228 | 1_2:-66394992 | Msa0085970:CDS |
| ATTGAATGATTCGTGGCCTG+GGG | 0.616819 | 1_2:+66394849 | None:intergenic |
| GATGGAGGAACGTAAGCTGC+TGG | 0.621310 | 1_2:-66391336 | Msa0085970:CDS |
| GACGACGACGGATATTCTAT+CGG | 0.621832 | 1_2:-66396278 | Msa0085970:CDS |
| GAAAATGATTCCAAGACCAA+AGG | 0.622099 | 1_2:-66396089 | Msa0085970:CDS |
| AAATTGTGTCTTCAACAAGA+AGG | 0.623805 | 1_2:-66392045 | Msa0085970:CDS |
| GACCGGAGGTTACTATCACT+CGG | 0.625423 | 1_2:+66395081 | None:intergenic |
| GATTGTAGGCAGAAATTCTG+AGG | 0.626192 | 1_2:-66391588 | Msa0085970:CDS |
| CTACTGGTTATTGATACCCC+AGG | 0.628719 | 1_2:-66394865 | Msa0085970:CDS |
| GTATGATCTTCAGAACGCAT+GGG | 0.629129 | 1_2:+66392069 | None:intergenic |
| TGTCAATAAAGCTCGAATTG+TGG | 0.631490 | 1_2:+66393041 | None:intergenic |
| TGCCGAAACAAGTAAACCAA+CGG | 0.633920 | 1_2:-66396111 | Msa0085970:CDS |
| ATATTCTATCGGAACTCAGG+TGG | 0.637461 | 1_2:-66396267 | Msa0085970:CDS |
| TCAAACTGTTTCAATGCCTG+TGG | 0.645297 | 1_2:-66395196 | Msa0085970:CDS |
| GCATGTTAGGGAGAAGCAAG+AGG | 0.650614 | 1_2:-66396045 | Msa0085970:CDS |
| CCGGTTATCAACGACGACGA+CGG | 0.652038 | 1_2:-66396290 | Msa0085970:CDS |
| AAAGAAAGAATCTGCTGACG+AGG | 0.653390 | 1_2:-66392099 | Msa0085970:CDS |
| TTGAGAAGGATTGACAGGAG+TGG | 0.663360 | 1_2:-66392434 | Msa0085970:CDS |
| TAGAGAACATGCCAAAGCTG+TGG | 0.663853 | 1_2:-66395157 | Msa0085970:CDS |
| TTACATGGCCAACATTAAGG+AGG | 0.664650 | 1_2:-66392126 | Msa0085970:CDS |
| GTTCAAGAAGGTGAGGCTGG+CGG | 0.665727 | 1_2:-66394985 | Msa0085970:CDS |
| TGCAGCAAATTGGTGACCGG+AGG | 0.668329 | 1_2:+66395067 | None:intergenic |
| GTATCAATAACCAGTAGACC+GGG | 0.674744 | 1_2:+66394871 | None:intergenic |
| AATTTCCGGTGTACTTCCGG+CGG | 0.674972 | 1_2:+66396139 | None:intergenic |
| TGAGACTGTGGAGTCAGCTG+CGG | 0.691381 | 1_2:-66396219 | Msa0085970:CDS |
| AGAGGAACTTGAGAGACTCG+CGG | 0.694706 | 1_2:-66395934 | Msa0085970:CDS |
| TTACTCAGTTCAAGGAACAG+GGG | 0.695377 | 1_2:-66394392 | Msa0085970:CDS |
| TGACCAAGAGAATTCGAACA+AGG | 0.696312 | 1_2:-66396315 | Msa0085970:CDS |
| GTAGGATGATCTATTGATGG+AGG | 0.710728 | 1_2:-66391351 | Msa0085970:intron |
| GTTTAAAACAAAGGTCACTG+AGG | 0.713412 | 1_2:-66394509 | Msa0085970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTATAAAAATAAAGAAA+TGG | - | chr1_2:66393290-66393309 | Msa0085970:intron | 10.0% |
| !! | ACTAATAAAGTTTATAATAT+AGG | - | chr1_2:66394569-66394588 | Msa0085970:CDS | 10.0% |
| !! | CTAATAAAGTTTATAATATA+GGG | - | chr1_2:66394570-66394589 | Msa0085970:CDS | 10.0% |
| !!! | TGATATTATTTTTTTTGAAT+TGG | - | chr1_2:66394784-66394803 | Msa0085970:CDS | 10.0% |
| !! | TTTAGTATTTAATATTTCAG+TGG | - | chr1_2:66394194-66394213 | Msa0085970:intron | 15.0% |
| !! | AAATAAACGATAAATGATAT+CGG | + | chr1_2:66395485-66395504 | None:intergenic | 15.0% |
| !! | AATGTGTATTTAACTATTTA+TGG | - | chr1_2:66396225-66396244 | Msa0085970:CDS | 15.0% |
| !!! | TTACTAATTTTGACATTACT+AGG | + | chr1_2:66392114-66392133 | None:intergenic | 20.0% |
| !!! | CAAACATATGTTTAAAACAA+AGG | - | chr1_2:66393127-66393146 | Msa0085970:intron | 20.0% |
| !! | TAAAACAAGAAAAATTAGCA+TGG | + | chr1_2:66393222-66393241 | None:intergenic | 20.0% |
| !! | TCACCAAAAATATGAAAATT+TGG | - | chr1_2:66394066-66394085 | Msa0085970:intron | 20.0% |
| !!! | CTACCAAATTTTCATATTTT+TGG | + | chr1_2:66394072-66394091 | None:intergenic | 20.0% |
| !! | CAAAAATATGAAAATTTGGT+AGG | - | chr1_2:66394070-66394089 | Msa0085970:intron | 20.0% |
| !! | ACTAATAGTAATAACATATC+CGG | + | chr1_2:66394230-66394249 | None:intergenic | 20.0% |
| !! | TGTTATTACTATTAGTTAAG+TGG | - | chr1_2:66394234-66394253 | Msa0085970:intron | 20.0% |
| !!! | ATTGATGTTGTTTTAGTTAA+TGG | - | chr1_2:66394451-66394470 | Msa0085970:intron | 20.0% |
| !!! | ACAATATATTTGCTAAAACT+TGG | + | chr1_2:66394854-66394873 | None:intergenic | 20.0% |
| !! | AAAATGAAGAAAAACATGAT+TGG | + | chr1_2:66395032-66395051 | None:intergenic | 20.0% |
| !! | TTTATAAATGTGTAGAGAAT+CGG | - | chr1_2:66395057-66395076 | Msa0085970:CDS | 20.0% |
| !!! | ATAAGATTTCATGTTATTTC+AGG | - | chr1_2:66395087-66395106 | Msa0085970:CDS | 20.0% |
| !!! | TAAGATTTCATGTTATTTCA+GGG | - | chr1_2:66395088-66395107 | Msa0085970:CDS | 20.0% |
| !! | ATATATTCCAAATCATCATT+AGG | + | chr1_2:66395157-66395176 | None:intergenic | 20.0% |
| !! | TCGTTTATTTGATCAATTTA+AGG | - | chr1_2:66395495-66395514 | Msa0085970:intron | 20.0% |
| !!! | TATCATTAAAGGCATTTTAA+AGG | - | chr1_2:66395645-66395664 | Msa0085970:intron | 20.0% |
| !!! | ACCAATATCAATGAAATTTT+GGG | + | chr1_2:66395866-66395885 | None:intergenic | 20.0% |
| !!! | TAACTATTTATGGATTTTGT+TGG | - | chr1_2:66396235-66396254 | Msa0085970:CDS | 20.0% |
| ! | AGAAAAAAGGAAAAAAGAAG+AGG | - | chr1_2:66391648-66391667 | Msa0085970:intron | 25.0% |
| ! | TAGAAAGAAGGAAAAACAAA+AGG | - | chr1_2:66391747-66391766 | Msa0085970:CDS | 25.0% |
| !! | AGTTTTTACTTCTTTCTAAC+AGG | - | chr1_2:66391867-66391886 | Msa0085970:intron | 25.0% |
| ! | TAAGATTCAAACACTAAAGT+AGG | + | chr1_2:66392019-66392038 | None:intergenic | 25.0% |
| ! | AATATAGAATGATGTTACTC+TGG | - | chr1_2:66392041-66392060 | Msa0085970:CDS | 25.0% |
| !!! | TGTTTTTTGTCATTCATTGA+TGG | - | chr1_2:66392247-66392266 | Msa0085970:CDS | 25.0% |
| ! | TTAAGTTATTGAATGATTCG+TGG | + | chr1_2:66392806-66392825 | None:intergenic | 25.0% |
| ! | ACGAATCATTCAATAACTTA+AGG | - | chr1_2:66392805-66392824 | Msa0085970:intron | 25.0% |
| !! | TCTATGTGATATTGCAATTT+TGG | - | chr1_2:66392842-66392861 | Msa0085970:intron | 25.0% |
| ! | CACTCAATCTATTAAAAATG+AGG | - | chr1_2:66392907-66392926 | Msa0085970:intron | 25.0% |
| ! | AACCTATAAAGAACATATAC+CGG | + | chr1_2:66392994-66393013 | None:intergenic | 25.0% |
| ! | ACTTTAACCACATAAAGAAT+TGG | + | chr1_2:66393479-66393498 | None:intergenic | 25.0% |
| !! | GTTCTTTTCATTTGACTAAA+AGG | + | chr1_2:66393751-66393770 | None:intergenic | 25.0% |
| ! | ATTTAATATTTCAGTGGTGA+AGG | - | chr1_2:66394200-66394219 | Msa0085970:intron | 25.0% |
| ! | CTAATAGTAATAACATATCC+GGG | + | chr1_2:66394229-66394248 | None:intergenic | 25.0% |
| ! | TTCAACATCAAGTGAAAATA+TGG | + | chr1_2:66394313-66394332 | None:intergenic | 25.0% |
| ! | AATAACCTTGATTTCCAAAA+CGG | + | chr1_2:66394413-66394432 | None:intergenic | 25.0% |
| ! | TGATAGGAAAATTATAACCT+TGG | - | chr1_2:66394712-66394731 | Msa0085970:CDS | 25.0% |
| ! | TAACATTATGCTTAACATGA+AGG | - | chr1_2:66394826-66394845 | Msa0085970:CDS | 25.0% |
| ! | GATAAAAACTAGCATAAAAG+AGG | + | chr1_2:66395010-66395029 | None:intergenic | 25.0% |
| ! | ATATATTAAAAAAGCAGCCT+TGG | - | chr1_2:66395171-66395190 | Msa0085970:CDS | 25.0% |
| !! | TGATCAATTTAAGGTTTACA+TGG | - | chr1_2:66395504-66395523 | Msa0085970:intron | 25.0% |
| ! | ATATCAACTCCCAAAATAAT+CGG | + | chr1_2:66395628-66395647 | None:intergenic | 25.0% |
| !!! | TTTTAACTGTATTTCCAATG+AGG | - | chr1_2:66395694-66395713 | Msa0085970:intron | 25.0% |
| ! | TTTAACTGTATTTCCAATGA+GGG | - | chr1_2:66395695-66395714 | Msa0085970:intron | 25.0% |
| !! | TGCAATGCATAAAATTTGTT+GGG | - | chr1_2:66395778-66395797 | Msa0085970:intron | 25.0% |
| ! | TTGCATTAATATTGTCTACT+TGG | - | chr1_2:66395812-66395831 | Msa0085970:intron | 25.0% |
| !!! | ATATCAATGAAATTTTGGGT+AGG | + | chr1_2:66395862-66395881 | None:intergenic | 25.0% |
| ! | ACCCAAAATTTCATTGATAT+TGG | - | chr1_2:66395862-66395881 | Msa0085970:CDS | 25.0% |
| !! | GACCAATATCAATGAAATTT+TGG | + | chr1_2:66395867-66395886 | None:intergenic | 25.0% |
| ! | CAGTTTATCGTTAATCTTAA+TGG | + | chr1_2:66395899-66395918 | None:intergenic | 25.0% |
| ! | CATTAAGATTAACGATAAAC+TGG | - | chr1_2:66395897-66395916 | Msa0085970:CDS | 25.0% |
| ! | TACTGTTGAATTATTGATGT+AGG | - | chr1_2:66396276-66396295 | Msa0085970:CDS | 25.0% |
| AAAAGAGAAGAGAAAGAAGA+AGG | - | chr1_2:66391450-66391469 | Msa0085970:intron | 30.0% | |
| ACTAGGTTACAACATCAATA+TGG | + | chr1_2:66392097-66392116 | None:intergenic | 30.0% | |
| TCTATAGCAAAGGAAGAAAA+TGG | + | chr1_2:66392215-66392234 | None:intergenic | 30.0% | |
| TCTTTGCTTATCTATAGCAA+AGG | + | chr1_2:66392225-66392244 | None:intergenic | 30.0% | |
| ! | ACTTTTGACACACAAATGTT+TGG | + | chr1_2:66392302-66392321 | None:intergenic | 30.0% |
| CAGATCAATCAAACATCATT+AGG | + | chr1_2:66392325-66392344 | None:intergenic | 30.0% | |
| CATTCAATAACTTAAGGTCT+CGG | - | chr1_2:66392811-66392830 | Msa0085970:intron | 30.0% | |
| ATTCAATAACTTAAGGTCTC+GGG | - | chr1_2:66392812-66392831 | Msa0085970:intron | 30.0% | |
| TTCCGGTATATGTTCTTTAT+AGG | - | chr1_2:66392989-66393008 | Msa0085970:intron | 30.0% | |
| ! | TCTCTTTTACTTGTAAGTTG+TGG | - | chr1_2:66393173-66393192 | Msa0085970:CDS | 30.0% |
| AATTACCTTATTGCACTTGT+AGG | + | chr1_2:66393336-66393355 | None:intergenic | 30.0% | |
| !!! | CTGTGTGAAACCATTTTTTT+GGG | - | chr1_2:66393381-66393400 | Msa0085970:CDS | 30.0% |
| CATTTACCAACCCAAAAAAA+TGG | + | chr1_2:66393394-66393413 | None:intergenic | 30.0% | |
| CCAAGAATAACATGATTTCA+TGG | + | chr1_2:66393504-66393523 | None:intergenic | 30.0% | |
| CCATGAAATCATGTTATTCT+TGG | - | chr1_2:66393501-66393520 | Msa0085970:intron | 30.0% | |
| AGAATGAGAACCACAAAAAT+GGG | - | chr1_2:66393551-66393570 | Msa0085970:intron | 30.0% | |
| TAACATGAACAAATCCTAAG+TGG | + | chr1_2:66393621-66393640 | None:intergenic | 30.0% | |
| TAAACCAAACAAATCCTAAG+TGG | + | chr1_2:66393689-66393708 | None:intergenic | 30.0% | |
| AAATGTGTCAACGATAACAT+AGG | - | chr1_2:66393821-66393840 | Msa0085970:intron | 30.0% | |
| ! | CTAATGACGGAAAATGATAA+AGG | + | chr1_2:66393942-66393961 | None:intergenic | 30.0% |
| ! | CTTTATCATTTTCCGTCATT+AGG | - | chr1_2:66393940-66393959 | Msa0085970:intron | 30.0% |
| !!! | TCAGAACATCTCAACTTTTT+TGG | - | chr1_2:66394000-66394019 | Msa0085970:intron | 30.0% |
| !!! | GAATGGCAAATCTTTGTTTT+CGG | - | chr1_2:66394103-66394122 | Msa0085970:intron | 30.0% |
| !!! | AATGGCAAATCTTTGTTTTC+GGG | - | chr1_2:66394104-66394123 | Msa0085970:intron | 30.0% |
| ! | ATTTTCACTTGATGTTGAAG+TGG | - | chr1_2:66394314-66394333 | Msa0085970:intron | 30.0% |
| CAAATAACAGTTAGACAGTT+AGG | + | chr1_2:66394372-66394391 | None:intergenic | 30.0% | |
| TTGGAAATCAAGGTTATTGA+AGG | - | chr1_2:66394415-66394434 | Msa0085970:intron | 30.0% | |
| ! | TATCACATTTGTTGCTTGAT+AGG | - | chr1_2:66394696-66394715 | Msa0085970:intron | 30.0% |
| AGTAATGGTTGTCTAATTTC+AGG | - | chr1_2:66394903-66394922 | Msa0085970:CDS | 30.0% | |
| GTAATGGTTGTCTAATTTCA+GGG | - | chr1_2:66394904-66394923 | Msa0085970:CDS | 30.0% | |
| !! | TTTCTTTTCAAGCATTACAC+TGG | + | chr1_2:66395371-66395390 | None:intergenic | 30.0% |
| !! | ACGAGAGTATTCTACTATAT+TGG | - | chr1_2:66395390-66395409 | Msa0085970:intron | 30.0% |
| TAAGGAACTTGCAGATAAAT+TGG | - | chr1_2:66395441-66395460 | Msa0085970:intron | 30.0% | |
| AAGGAACTTGCAGATAAATT+GGG | - | chr1_2:66395442-66395461 | Msa0085970:intron | 30.0% | |
| TTCTTGTTGAAGACACAATT+TGG | + | chr1_2:66395601-66395620 | None:intergenic | 30.0% | |
| AAATTGTGTCTTCAACAAGA+AGG | - | chr1_2:66395600-66395619 | Msa0085970:intron | 30.0% | |
| ! | AAGAAGGATCCGATTATTTT+GGG | - | chr1_2:66395616-66395635 | Msa0085970:intron | 30.0% |
| !! | TTGGGAGTTGATATCATTAA+AGG | - | chr1_2:66395634-66395653 | Msa0085970:intron | 30.0% |
| !!! | ACATCTACCATAGTTTTTTC+CGG | - | chr1_2:66395724-66395743 | Msa0085970:intron | 30.0% |
| GTGCAATGCATAAAATTTGT+TGG | - | chr1_2:66395777-66395796 | Msa0085970:intron | 30.0% | |
| !! | TTTTGGGTAGGAATACAAAT+TGG | + | chr1_2:66395850-66395869 | None:intergenic | 30.0% |
| AGAGAAATAAAACAGTGTAG+AGG | - | chr1_2:66395993-66396012 | Msa0085970:CDS | 30.0% | |
| ! | AAAATGTTTGGGAGACATTT+TGG | - | chr1_2:66396088-66396107 | Msa0085970:CDS | 30.0% |
| ! | AAATGTTTGGGAGACATTTT+GGG | - | chr1_2:66396089-66396108 | Msa0085970:CDS | 30.0% |
| AACTTGTAAGCCATATTTCA+CGG | - | chr1_2:66396122-66396141 | Msa0085970:CDS | 30.0% | |
| !! | TTCCGTTGGTTTACTTGTTT+CGG | + | chr1_2:66391539-66391558 | None:intergenic | 35.0% |
| GAAAATGATTCCAAGACCAA+AGG | - | chr1_2:66391556-66391575 | Msa0085970:CDS | 35.0% | |
| GAAAAGAGGCTGAAGAAAAA+AGG | - | chr1_2:66391635-66391654 | Msa0085970:intron | 35.0% | |
| AAGAAGAGGAAGAGAATCTA+AGG | - | chr1_2:66391662-66391681 | Msa0085970:intron | 35.0% | |
| GAATCTAAGGAAAGAAGAAG+AGG | - | chr1_2:66391675-66391694 | Msa0085970:intron | 35.0% | |
| AGAGGCTAAACATAGAAAGA+AGG | - | chr1_2:66391735-66391754 | Msa0085970:CDS | 35.0% | |
| !!! | ATGTTACTCTGGAATTTTGC+TGG | - | chr1_2:66392052-66392071 | Msa0085970:CDS | 35.0% |
| !!! | TGTTACTCTGGAATTTTGCT+GGG | - | chr1_2:66392053-66392072 | Msa0085970:CDS | 35.0% |
| !! | TTTTGCTTTTCCTCCAAAGT+AGG | - | chr1_2:66392417-66392436 | Msa0085970:CDS | 35.0% |
| !! | TTGATTTGTAGCTCCTACTT+TGG | + | chr1_2:66392433-66392452 | None:intergenic | 35.0% |
| TCGAATACAATCCAGAAGTT+TGG | + | chr1_2:66392631-66392650 | None:intergenic | 35.0% | |
| AAACTTCTGGATTGTATTCG+AGG | - | chr1_2:66392630-66392649 | Msa0085970:intron | 35.0% | |
| TACAAATGTTCAAGAAGGTG+AGG | - | chr1_2:66392653-66392672 | Msa0085970:intron | 35.0% | |
| GAACATACGTGATAGAACTA+AGG | - | chr1_2:66392722-66392741 | Msa0085970:CDS | 35.0% | |
| TTCAATAACTTAAGGTCTCG+GGG | - | chr1_2:66392813-66392832 | Msa0085970:intron | 35.0% | |
| TTGGTTGTTGACATTATGCA+TGG | - | chr1_2:66392861-66392880 | Msa0085970:intron | 35.0% | |
| TTGAGTGACTCAATAGTTTG+TGG | + | chr1_2:66392894-66392913 | None:intergenic | 35.0% | |
| CACTGTTCTTGCAACATTAT+AGG | - | chr1_2:66393028-66393047 | Msa0085970:CDS | 35.0% | |
| ! | TTGCAACATTATAGGTTGAC+AGG | - | chr1_2:66393036-66393055 | Msa0085970:CDS | 35.0% |
| ! | TTATAGGTTGACAGGCTTTA+TGG | - | chr1_2:66393044-66393063 | Msa0085970:CDS | 35.0% |
| TGCTTCATTGCTTTACGAAT+TGG | + | chr1_2:66393092-66393111 | None:intergenic | 35.0% | |
| ! | GTTTAAAACAAAGGTCACTG+AGG | - | chr1_2:66393136-66393155 | Msa0085970:intron | 35.0% |
| CTAGATTGTTACTCAGTTCA+AGG | - | chr1_2:66393245-66393264 | Msa0085970:intron | 35.0% | |
| CCAAAAAAATGGTTTCACAC+AGG | + | chr1_2:66393383-66393402 | None:intergenic | 35.0% | |
| !!! | CCTGTGTGAAACCATTTTTT+TGG | - | chr1_2:66393380-66393399 | Msa0085970:CDS | 35.0% |
| !!! | GTGAAACCATTTTTTTGGGT+TGG | - | chr1_2:66393385-66393404 | Msa0085970:CDS | 35.0% |
| TTGGTAAATGACACAATAGC+TGG | - | chr1_2:66393404-66393423 | Msa0085970:CDS | 35.0% | |
| !! | AATGACACAATAGCTGGTTT+TGG | - | chr1_2:66393410-66393429 | Msa0085970:CDS | 35.0% |
| TGTGAAAACATTGTCTGTTG+CGG | - | chr1_2:66393449-66393468 | Msa0085970:intron | 35.0% | |
| ! | CGGTTTTCCAATTCTTTATG+TGG | - | chr1_2:66393469-66393488 | Msa0085970:intron | 35.0% |
| GTTCTCATTCTCAAAGACAA+AGG | + | chr1_2:66393542-66393561 | None:intergenic | 35.0% | |
| GAGAATGAGAACCACAAAAA+TGG | - | chr1_2:66393550-66393569 | Msa0085970:intron | 35.0% | |
| TTCATTTGACTAAAAGGCTG+CGG | + | chr1_2:66393745-66393764 | None:intergenic | 35.0% | |
| ACAATTCAACATCCTGACAT+TGG | + | chr1_2:66393782-66393801 | None:intergenic | 35.0% | |
| GAATGTAGGCATCTCAAAAA+TGG | + | chr1_2:66393868-66393887 | None:intergenic | 35.0% | |
| AAATGCTCGATGTAGAATGT+AGG | + | chr1_2:66393882-66393901 | None:intergenic | 35.0% | |
| ! | TTCTACATCGAGCATTTTCT+TGG | - | chr1_2:66393885-66393904 | Msa0085970:intron | 35.0% |
| ! | ATCGAGCATTTTCTTGGTTA+CGG | - | chr1_2:66393891-66393910 | Msa0085970:intron | 35.0% |
| AAAACACCTCTTCCTAATGA+CGG | + | chr1_2:66393955-66393974 | None:intergenic | 35.0% | |
| GAATCTGCTTCATACTTTGT+CGG | - | chr1_2:66394154-66394173 | Msa0085970:intron | 35.0% | |
| ! | GTCTAACTGTTATTTGACTG+TGG | - | chr1_2:66394376-66394395 | Msa0085970:CDS | 35.0% |
| ATCAAGGTTATTGAAGGTCA+TGG | - | chr1_2:66394421-66394440 | Msa0085970:intron | 35.0% | |
| TTAATGGCGTTCTTCATGAA+GGG | - | chr1_2:66394467-66394486 | Msa0085970:intron | 35.0% | |
| ! | AATAGTTGTATCTGGAATGC+AGG | - | chr1_2:66394495-66394514 | Msa0085970:intron | 35.0% |
| TGTCAATAAAGCTCGAATTG+TGG | + | chr1_2:66394607-66394626 | None:intergenic | 35.0% | |
| TTAACACGAAGTTCCTTCAT+TGG | + | chr1_2:66394636-66394655 | None:intergenic | 35.0% | |
| AATGAAGGAACTTCGTGTTA+AGG | - | chr1_2:66394635-66394654 | Msa0085970:intron | 35.0% | |
| CACTAGATAGTTATGAACCA+AGG | + | chr1_2:66394732-66394751 | None:intergenic | 35.0% | |
| ATAACTATCTAGTGTGCATG+TGG | - | chr1_2:66394738-66394757 | Msa0085970:CDS | 35.0% | |
| AATATCAACCAAAACCGAAG+AGG | + | chr1_2:66394771-66394790 | None:intergenic | 35.0% | |
| ! | TTTGACTTCCAGCTAAGTAA+TGG | - | chr1_2:66394888-66394907 | Msa0085970:CDS | 35.0% |
| TTAGACAACCATTACTTAGC+TGG | + | chr1_2:66394899-66394918 | None:intergenic | 35.0% | |
| ! | CAGCTTTGATTTCTTTGTGA+TGG | + | chr1_2:66394939-66394958 | None:intergenic | 35.0% |
| ACCAATATCCTTAAGTACCT+GGG | + | chr1_2:66394983-66395002 | None:intergenic | 35.0% | |
| AACCAATATCCTTAAGTACC+TGG | + | chr1_2:66394984-66395003 | None:intergenic | 35.0% | |
| TGGCTCATTGGAATCATTAT+TGG | - | chr1_2:66395264-66395283 | Msa0085970:intron | 35.0% | |
| TCACATCCTTCTTATGTACA+GGG | + | chr1_2:66395342-66395361 | None:intergenic | 35.0% | |
| ATCACATCCTTCTTATGTAC+AGG | + | chr1_2:66395343-66395362 | None:intergenic | 35.0% | |
| ACATAAGAAGGATGTGATGA+AGG | - | chr1_2:66395345-66395364 | Msa0085970:intron | 35.0% | |
| ! | CTTTTTCTCCTCCTTAATGT+TGG | + | chr1_2:66395530-66395549 | None:intergenic | 35.0% |
| ! | CAAGAAGGATCCGATTATTT+TGG | - | chr1_2:66395615-66395634 | Msa0085970:intron | 35.0% |
| TAGATGTCAAAAACCCTCAT+TGG | + | chr1_2:66395711-66395730 | None:intergenic | 35.0% | |
| !!! | CATCTACCATAGTTTTTTCC+GGG | - | chr1_2:66395725-66395744 | Msa0085970:intron | 35.0% |
| ATATTGTCTACTTGGCAGAT+TGG | - | chr1_2:66395820-66395839 | Msa0085970:intron | 35.0% | |
| AGATCAACTGCATACCTTAA+TGG | + | chr1_2:66395953-66395972 | None:intergenic | 35.0% | |
| ATGCAGTTGATCTTTAGACT+TGG | - | chr1_2:66395960-66395979 | Msa0085970:CDS | 35.0% | |
| TGCAGTTGATCTTTAGACTT+GGG | - | chr1_2:66395961-66395980 | Msa0085970:CDS | 35.0% | |
| TCTTGATGTTCTCTTCATCT+TGG | - | chr1_2:66396028-66396047 | Msa0085970:CDS | 35.0% | |
| AGGAACAGCAGAAAATGTTT+GGG | - | chr1_2:66396077-66396096 | Msa0085970:CDS | 35.0% | |
| CAATAGATCTCCGTGAAATA+TGG | + | chr1_2:66396135-66396154 | None:intergenic | 35.0% | |
| GATGTAGGATGATCTATTGA+TGG | - | chr1_2:66396291-66396310 | Msa0085970:CDS | 35.0% | |
| !! | TTCTCTTGGTCAGGTATTGA+TGG | + | chr1_2:66391322-66391341 | None:intergenic | 40.0% |
| TTGTTCGAATTCTCTTGGTC+AGG | + | chr1_2:66391331-66391350 | None:intergenic | 40.0% | |
| TGACCAAGAGAATTCGAACA+AGG | - | chr1_2:66391330-66391349 | Msa0085970:CDS | 40.0% | |
| ATATTCTATCGGAACTCAGG+TGG | - | chr1_2:66391378-66391397 | Msa0085970:intron | 40.0% | |
| GAAGAGAAAGAAGAAGGAGA+AGG | - | chr1_2:66391456-66391475 | Msa0085970:intron | 40.0% | |
| TTCAATTTCCGGTGTACTTC+CGG | + | chr1_2:66391512-66391531 | None:intergenic | 40.0% | |
| GTTTCGGCAGTTTCAATTTC+CGG | + | chr1_2:66391523-66391542 | None:intergenic | 40.0% | |
| TGCCGAAACAAGTAAACCAA+CGG | - | chr1_2:66391534-66391553 | Msa0085970:CDS | 40.0% | |
| ! | GTCTTGGAATCATTTTCCGT+TGG | + | chr1_2:66391553-66391572 | None:intergenic | 40.0% |
| ATTCCAAGACCAAAGGAGTT+GGG | - | chr1_2:66391563-66391582 | Msa0085970:CDS | 40.0% | |
| !! | AGAAAGTGCCAAAGCATGTT+AGG | - | chr1_2:66391587-66391606 | Msa0085970:CDS | 40.0% |
| !! | GAAAGTGCCAAAGCATGTTA+GGG | - | chr1_2:66391588-66391607 | Msa0085970:CDS | 40.0% |
| AAGAAGAAGAGGAGCGAATA+AGG | - | chr1_2:66391686-66391705 | Msa0085970:intron | 40.0% | |
| ! | GTTCTCTCTGCTTCTTTTTC+AGG | + | chr1_2:66391780-66391799 | None:intergenic | 40.0% |
| ACTGTAACTGTCAGAGTTAC+AGG | + | chr1_2:66392178-66392197 | None:intergenic | 40.0% | |
| ATGGTGAACCACCAAGTATT+AGG | - | chr1_2:66392266-66392285 | Msa0085970:CDS | 40.0% | |
| GACACACAAATGTTTGGTCA+GGG | + | chr1_2:66392296-66392315 | None:intergenic | 40.0% | |
| TGACACACAAATGTTTGGTC+AGG | + | chr1_2:66392297-66392316 | None:intergenic | 40.0% | |
| ATTTGTAGCTCCTACTTTGG+AGG | + | chr1_2:66392430-66392449 | None:intergenic | 40.0% | |
| TCAAACTGTTTCAATGCCTG+TGG | - | chr1_2:66392449-66392468 | Msa0085970:CDS | 40.0% | |
| !! | TCACCAATTTGCTGCATCAT+GGG | - | chr1_2:66392585-66392604 | Msa0085970:intron | 40.0% |
| CGAGGTACAAATGTTCAAGA+AGG | - | chr1_2:66392648-66392667 | Msa0085970:intron | 40.0% | |
| GGCGGTATTACTCAACAAAT+TGG | - | chr1_2:66392678-66392697 | Msa0085970:intron | 40.0% | |
| GTATCAATAACCAGTAGACC+GGG | + | chr1_2:66392777-66392796 | None:intergenic | 40.0% | |
| GGTATCAATAACCAGTAGAC+CGG | + | chr1_2:66392778-66392797 | None:intergenic | 40.0% | |
| TATTGAATGATTCGTGGCCT+GGG | + | chr1_2:66392800-66392819 | None:intergenic | 40.0% | |
| TTATTGAATGATTCGTGGCC+TGG | + | chr1_2:66392801-66392820 | None:intergenic | 40.0% | |
| TGTTACTCAGTTCAAGGAAC+AGG | - | chr1_2:66393251-66393270 | Msa0085970:intron | 40.0% | |
| GTTACTCAGTTCAAGGAACA+GGG | - | chr1_2:66393252-66393271 | Msa0085970:intron | 40.0% | |
| TTACTCAGTTCAAGGAACAG+GGG | - | chr1_2:66393253-66393272 | Msa0085970:intron | 40.0% | |
| TTGTGCCTACAAGTGCAATA+AGG | - | chr1_2:66393328-66393347 | Msa0085970:intron | 40.0% | |
| !! | CTATGAGTTGCCCATTTTTG+TGG | + | chr1_2:66393564-66393583 | None:intergenic | 40.0% |
| AACAAATCCTAAGTGGATGC+AGG | + | chr1_2:66393614-66393633 | None:intergenic | 40.0% | |
| TTAACGTTCCAAACGTGTCA+AGG | - | chr1_2:66393638-66393657 | Msa0085970:intron | 40.0% | |
| ! | GCATCCACTTAGGATTTGTT+TGG | - | chr1_2:66393614-66393633 | Msa0085970:intron | 40.0% |
| TCATTTGACTAAAAGGCTGC+GGG | + | chr1_2:66393744-66393763 | None:intergenic | 40.0% | |
| ! | ACATCCTGACATTGGTTGTT+GGG | + | chr1_2:66393774-66393793 | None:intergenic | 40.0% |
| ! | AACATCCTGACATTGGTTGT+TGG | + | chr1_2:66393775-66393794 | None:intergenic | 40.0% |
| ! | CATTTTCCGTCATTAGGAAG+AGG | - | chr1_2:66393946-66393965 | Msa0085970:intron | 40.0% |
| !! | GTTGAGATGTTCTGAAACAC+TGG | + | chr1_2:66393995-66394014 | None:intergenic | 40.0% |
| AGAGAGGTTGGACACAATTT+GGG | + | chr1_2:66394031-66394050 | None:intergenic | 40.0% | |
| TGAAAATTTGGTAGGAGCAG+AGG | - | chr1_2:66394078-66394097 | Msa0085970:intron | 40.0% | |
| GAAAATTTGGTAGGAGCAGA+GGG | - | chr1_2:66394079-66394098 | Msa0085970:intron | 40.0% | |
| ! | CTTCTTGGTCATGGTCTTTT+GGG | + | chr1_2:66394261-66394280 | None:intergenic | 40.0% |
| GTATGTAAGCTTCTTGGTCA+TGG | + | chr1_2:66394270-66394289 | None:intergenic | 40.0% | |
| TTCGCTGTATGTAAGCTTCT+TGG | + | chr1_2:66394276-66394295 | None:intergenic | 40.0% | |
| TGATTTCCAAAACGGTACAC+TGG | + | chr1_2:66394405-66394424 | None:intergenic | 40.0% | |
| !!! | GTGTACCGTTTTGGAAATCA+AGG | - | chr1_2:66394405-66394424 | Msa0085970:intron | 40.0% |
| GTTAATGGCGTTCTTCATGA+AGG | - | chr1_2:66394466-66394485 | Msa0085970:intron | 40.0% | |
| TAATGGCGTTCTTCATGAAG+GGG | - | chr1_2:66394468-66394487 | Msa0085970:intron | 40.0% | |
| GGGGATCAAATAGTTGTATC+TGG | - | chr1_2:66394487-66394506 | Msa0085970:intron | 40.0% | |
| GCTCGAATTGTGGTAACAAT+TGG | + | chr1_2:66394597-66394616 | None:intergenic | 40.0% | |
| ATTGACACCTCATCCAATGA+AGG | - | chr1_2:66394620-66394639 | Msa0085970:intron | 40.0% | |
| ! | TGCTGGTGCTAGTTTATATG+TGG | - | chr1_2:66395126-66395145 | Msa0085970:CDS | 40.0% |
| GGTGAAGCCTAATGATGATT+TGG | - | chr1_2:66395147-66395166 | Msa0085970:CDS | 40.0% | |
| CCAACAGGAATATTCACTTC+TGG | + | chr1_2:66395304-66395323 | None:intergenic | 40.0% | |
| CCAGAAGTGAATATTCCTGT+TGG | - | chr1_2:66395301-66395320 | Msa0085970:intron | 40.0% | |
| CCTATGTTTATAGCACCAAC+AGG | + | chr1_2:66395319-66395338 | None:intergenic | 40.0% | |
| !! | CCTGTTGGTGCTATAAACAT+AGG | - | chr1_2:66395316-66395335 | Msa0085970:intron | 40.0% |
| ATCTGCAAGTTCCTTAGCTT+CGG | + | chr1_2:66395437-66395456 | None:intergenic | 40.0% | |
| GGTTTACATGGCCAACATTA+AGG | - | chr1_2:66395516-66395535 | Msa0085970:intron | 40.0% | |
| TTACATGGCCAACATTAAGG+AGG | - | chr1_2:66395519-66395538 | Msa0085970:intron | 40.0% | |
| AAAGAAAGAATCTGCTGACG+AGG | - | chr1_2:66395546-66395565 | Msa0085970:intron | 40.0% | |
| GTATGATCTTCAGAACGCAT+GGG | + | chr1_2:66395579-66395598 | None:intergenic | 40.0% | |
| CCATAACCCGGAAAAAACTA+TGG | + | chr1_2:66395734-66395753 | None:intergenic | 40.0% | |
| !!! | CCATAGTTTTTTCCGGGTTA+TGG | - | chr1_2:66395731-66395750 | Msa0085970:intron | 40.0% |
| CTCTCATTACAACCATAACC+CGG | + | chr1_2:66395746-66395765 | None:intergenic | 40.0% | |
| !! | CATCTTGGTTTGCAGATTGT+AGG | - | chr1_2:66396043-66396062 | Msa0085970:CDS | 40.0% |
| GATTGTAGGCAGAAATTCTG+AGG | - | chr1_2:66396057-66396076 | Msa0085970:CDS | 40.0% | |
| GAGGAACAGCAGAAAATGTT+TGG | - | chr1_2:66396076-66396095 | Msa0085970:CDS | 40.0% | |
| GTAGGATGATCTATTGATGG+AGG | - | chr1_2:66396294-66396313 | Msa0085970:CDS | 40.0% | |
| !! | GAGCCTTGTTCGAATTCTCT+TGG | + | chr1_2:66391336-66391355 | None:intergenic | 45.0% |
| AGAGAATTCGAACAAGGCTC+CGG | - | chr1_2:66391336-66391355 | Msa0085970:CDS | 45.0% | |
| GACGACGACGGATATTCTAT+CGG | - | chr1_2:66391367-66391386 | Msa0085970:intron | 45.0% | |
| CGGATATTCTATCGGAACTC+AGG | - | chr1_2:66391375-66391394 | Msa0085970:intron | 45.0% | |
| GATTCCAAGACCAAAGGAGT+TGG | - | chr1_2:66391562-66391581 | Msa0085970:CDS | 45.0% | |
| CACTTTCTTCCCAACTCCTT+TGG | + | chr1_2:66391575-66391594 | None:intergenic | 45.0% | |
| TGCTTCTCCCTAACATGCTT+TGG | + | chr1_2:66391598-66391617 | None:intergenic | 45.0% | |
| GGAAGTGACTCGAAGAAAAG+AGG | - | chr1_2:66391621-66391640 | Msa0085970:intron | 45.0% | |
| AGAGGAGCGAATAAGGTTAG+AGG | - | chr1_2:66391693-66391712 | Msa0085970:intron | 45.0% | |
| TGATACCATAGCAGCAGTCT+TGG | - | chr1_2:66391931-66391950 | Msa0085970:intron | 45.0% | |
| GATACCATAGCAGCAGTCTT+GGG | - | chr1_2:66391932-66391951 | Msa0085970:intron | 45.0% | |
| CTGGGAAGTGATCAAACTTC+TGG | - | chr1_2:66392071-66392090 | Msa0085970:CDS | 45.0% | |
| AGGGAAGACCTAATACTTGG+TGG | + | chr1_2:66392277-66392296 | None:intergenic | 45.0% | |
| GTCAGGGAAGACCTAATACT+TGG | + | chr1_2:66392280-66392299 | None:intergenic | 45.0% | |
| ATGCTTTATCCCACTAGACG+AGG | + | chr1_2:66392360-66392379 | None:intergenic | 45.0% | |
| TCTTCAGTTTCTTCAGCCAC+AGG | + | chr1_2:66392468-66392487 | None:intergenic | 45.0% | |
| TAGAGAACATGCCAAAGCTG+TGG | - | chr1_2:66392488-66392507 | Msa0085970:CDS | 45.0% | |
| TTTCTCCTCAACCACAGCTT+TGG | + | chr1_2:66392502-66392521 | None:intergenic | 45.0% | |
| ! | AGAAGAGCACGATACACAAC+CGG | - | chr1_2:66392524-66392543 | Msa0085970:CDS | 45.0% |
| TTACTATCACTCGGCCTAGA+AGG | + | chr1_2:66392558-66392577 | None:intergenic | 45.0% | |
| ! | TGATGCAGCAAATTGGTGAC+CGG | + | chr1_2:66392584-66392603 | None:intergenic | 45.0% |
| !! | GTCACCAATTTGCTGCATCA+TGG | - | chr1_2:66392584-66392603 | Msa0085970:intron | 45.0% |
| TGACCCATGATGCAGCAAAT+TGG | + | chr1_2:66392591-66392610 | None:intergenic | 45.0% | |
| TGCTGGCAAAACCAAACTTC+TGG | - | chr1_2:66392617-66392636 | Msa0085970:intron | 45.0% | |
| AATGTTCAAGAAGGTGAGGC+TGG | - | chr1_2:66392657-66392676 | Msa0085970:intron | 45.0% | |
| CTATCACGTATGTTCTCAGC+AGG | + | chr1_2:66392717-66392736 | None:intergenic | 45.0% | |
| ! | CTACTGGTTATTGATACCCC+AGG | - | chr1_2:66392780-66392799 | Msa0085970:intron | 45.0% |
| ATTGAATGATTCGTGGCCTG+GGG | + | chr1_2:66392799-66392818 | None:intergenic | 45.0% | |
| GAAGCAGCAGCTCATATAAG+TGG | + | chr1_2:66392972-66392991 | None:intergenic | 45.0% | |
| ! | CTTATATGAGCTGCTGCTTC+CGG | - | chr1_2:66392972-66392991 | Msa0085970:intron | 45.0% |
| !! | ACAGGAGCGAAAGAGTGTTA+TGG | + | chr1_2:66393365-66393384 | None:intergenic | 45.0% |
| !!! | AGCTGGTTTTGGAAGCACTT+AGG | - | chr1_2:66393421-66393440 | Msa0085970:CDS | 45.0% |
| TCTTGTTCCTGCATCCACTT+AGG | - | chr1_2:66393604-66393623 | Msa0085970:intron | 45.0% | |
| CGTTGTTCTTGCATCCACTT+AGG | - | chr1_2:66393672-66393691 | Msa0085970:intron | 45.0% | |
| ! | CATCCTGACATTGGTTGTTG+GGG | + | chr1_2:66393773-66393792 | None:intergenic | 45.0% |
| CAGAGAGGTTGGACACAATT+TGG | + | chr1_2:66394032-66394051 | None:intergenic | 45.0% | |
| ATTTCACGTAGAGCACAGAG+AGG | + | chr1_2:66394047-66394066 | None:intergenic | 45.0% | |
| TCTACGCAATGCTGTGGTTA+TGG | + | chr1_2:66394136-66394155 | None:intergenic | 45.0% | |
| TTTCAGTGGTGAAGGAATCC+CGG | - | chr1_2:66394208-66394227 | Msa0085970:intron | 45.0% | |
| ! | GCTTCTTGGTCATGGTCTTT+TGG | + | chr1_2:66394262-66394281 | None:intergenic | 45.0% |
| ! | TACATACAGCGAAGAAGTGC+AGG | - | chr1_2:66394283-66394302 | Msa0085970:intron | 45.0% |
| CGAAGTTCCTTCATTGGATG+AGG | + | chr1_2:66394630-66394649 | None:intergenic | 45.0% | |
| GCCCAGGTACTTAAGGATAT+TGG | - | chr1_2:66394979-66394998 | Msa0085970:CDS | 45.0% | |
| TTGAGAAGGATTGACAGGAG+TGG | - | chr1_2:66395211-66395230 | Msa0085970:intron | 45.0% | |
| CATAGGCCCTGTACATAAGA+AGG | - | chr1_2:66395333-66395352 | Msa0085970:intron | 45.0% | |
| GGTATGATCTTCAGAACGCA+TGG | + | chr1_2:66395580-66395599 | None:intergenic | 45.0% | |
| TGGTTGATCGTGCGACAAAA+GGG | - | chr1_2:66395917-66395936 | Msa0085970:CDS | 45.0% | |
| !! | TATTATAAAAATAAAGAAAT+GGG | - | chr1_2:66393291-66393310 | Msa0085970:intron | 5.0% |
| GGAAGAGAAACCTGAGACTG+TGG | - | chr1_2:66391414-66391433 | Msa0085970:intron | 50.0% | |
| AATTTCCGGTGTACTTCCGG+CGG | + | chr1_2:66391509-66391528 | None:intergenic | 50.0% | |
| CTTCCCAACTCCTTTGGTCT+TGG | + | chr1_2:66391569-66391588 | None:intergenic | 50.0% | |
| GCATGTTAGGGAGAAGCAAG+AGG | - | chr1_2:66391600-66391619 | Msa0085970:intron | 50.0% | |
| AGAGGAACTTGAGAGACTCG+CGG | - | chr1_2:66391711-66391730 | Msa0085970:CDS | 50.0% | |
| ! | GAGAGAACAAGCAGAGCGTT+TGG | - | chr1_2:66391792-66391811 | Msa0085970:CDS | 50.0% |
| ! | AGAACAAGCAGAGCGTTTGG+AGG | - | chr1_2:66391795-66391814 | Msa0085970:CDS | 50.0% |
| ! | AGGAGGCAGCTTTGTAATGC+TGG | - | chr1_2:66391823-66391842 | Msa0085970:intron | 50.0% |
| ATGACCCAAGACTGCTGCTA+TGG | + | chr1_2:66391939-66391958 | None:intergenic | 50.0% | |
| ATGCTACCTGCTGCAGCTAA+TGG | - | chr1_2:66392145-66392164 | Msa0085970:CDS | 50.0% | |
| TTGACACCATTAGCTGCAGC+AGG | + | chr1_2:66392154-66392173 | None:intergenic | 50.0% | |
| CTTTATCCCACTAGACGAGG+AGG | + | chr1_2:66392357-66392376 | None:intergenic | 50.0% | |
| ACATGCCAAAGCTGTGGTTG+AGG | - | chr1_2:66392494-66392513 | Msa0085970:CDS | 50.0% | |
| GACCGGAGGTTACTATCACT+CGG | + | chr1_2:66392567-66392586 | None:intergenic | 50.0% | |
| TTGCTGCATCATGGGTCATG+TGG | - | chr1_2:66392593-66392612 | Msa0085970:intron | 50.0% | |
| ATCATGGGTCATGTGGATGC+TGG | - | chr1_2:66392600-66392619 | Msa0085970:intron | 50.0% | |
| ACTGAAAGCTGATGCAACGC+TGG | - | chr1_2:66392746-66392765 | Msa0085970:intron | 50.0% | |
| AACTTAAGGTCTCGGGGTTC+AGG | - | chr1_2:66392819-66392838 | Msa0085970:intron | 50.0% | |
| ! | AGGTTGACAGGCTTTATGGC+TGG | - | chr1_2:66393048-66393067 | Msa0085970:CDS | 50.0% |
| GGTTTGAGCCTTGACACGTT+TGG | + | chr1_2:66393649-66393668 | None:intergenic | 50.0% | |
| GTGGATGCAAGAACAACGCA+TGG | + | chr1_2:66393670-66393689 | None:intergenic | 50.0% | |
| GAACCCCAACAACCAATGTC+AGG | - | chr1_2:66393767-66393786 | Msa0085970:intron | 50.0% | |
| GCAGATTCTACGCAATGCTG+TGG | + | chr1_2:66394142-66394161 | None:intergenic | 50.0% | |
| ! | TGGCTACCAGTGTACCGTTT+TGG | - | chr1_2:66394396-66394415 | Msa0085970:CDS | 50.0% |
| AACCAAAACCGAAGAGGCTC+TGG | + | chr1_2:66394765-66394784 | None:intergenic | 50.0% | |
| GGACTTGAACATGCTGTTGC+TGG | - | chr1_2:66395109-66395128 | Msa0085970:CDS | 50.0% | |
| AAAAGCAGCCTTGGAAGACG+TGG | - | chr1_2:66395180-66395199 | Msa0085970:CDS | 50.0% | |
| CGGTCTTGAGAAGGATTGAC+AGG | - | chr1_2:66395206-66395225 | Msa0085970:CDS | 50.0% | |
| AAGGATTGACAGGAGTGGTG+AGG | - | chr1_2:66395216-66395235 | Msa0085970:intron | 50.0% | |
| AGGATTGACAGGAGTGGTGA+GGG | - | chr1_2:66395217-66395236 | Msa0085970:intron | 50.0% | |
| TGTGTCCAGGCATCTACACT+TGG | - | chr1_2:66395244-66395263 | Msa0085970:intron | 50.0% | |
| ATGAGCCAAGTGTAGATGCC+TGG | + | chr1_2:66395252-66395271 | None:intergenic | 50.0% | |
| GGCATCTACACTTGGCTCAT+TGG | - | chr1_2:66395252-66395271 | Msa0085970:intron | 50.0% | |
| CAAAGTCACCTCCGAAGCTA+AGG | - | chr1_2:66395423-66395442 | Msa0085970:intron | 50.0% | |
| TGCAAGTTCCTTAGCTTCGG+AGG | + | chr1_2:66395434-66395453 | None:intergenic | 50.0% | |
| CTGGTTGATCGTGCGACAAA+AGG | - | chr1_2:66395916-66395935 | Msa0085970:CDS | 50.0% | |
| AGGGCAGCAAGTAGCCATTA+AGG | - | chr1_2:66395936-66395955 | Msa0085970:CDS | 50.0% | |
| AGCTGCTGGTGAACTTGAAG+AGG | - | chr1_2:66396323-66396342 | Msa0085970:CDS | 50.0% | |
| !! | CCGTCGTCGTCGTTGATAAC+CGG | + | chr1_2:66391358-66391377 | None:intergenic | 55.0% |
| CCGGTTATCAACGACGACGA+CGG | - | chr1_2:66391355-66391374 | Msa0085970:intron | 55.0% | |
| !! | TCAGGTGGCTCTGATGGCTT+TGG | - | chr1_2:66391393-66391412 | Msa0085970:intron | 55.0% |
| TGAGACTGTGGAGTCAGCTG+CGG | - | chr1_2:66391426-66391445 | Msa0085970:intron | 55.0% | |
| ACTTGAGAGACTCGCGGAAG+AGG | - | chr1_2:66391717-66391736 | Msa0085970:CDS | 55.0% | |
| TAGCCAACCTCCTCGTCTAG+TGG | - | chr1_2:66392347-66392366 | Msa0085970:CDS | 55.0% | |
| AGCCAACCTCCTCGTCTAGT+GGG | - | chr1_2:66392348-66392367 | Msa0085970:CDS | 55.0% | |
| ATCCCACTAGACGAGGAGGT+TGG | + | chr1_2:66392353-66392372 | None:intergenic | 55.0% | |
| GGCCGAGTGATAGTAACCTC+CGG | - | chr1_2:66392562-66392581 | Msa0085970:intron | 55.0% | |
| ! | TGCAGCAAATTGGTGACCGG+AGG | + | chr1_2:66392581-66392600 | None:intergenic | 55.0% |
| GTTCAAGAAGGTGAGGCTGG+CGG | - | chr1_2:66392660-66392679 | Msa0085970:intron | 55.0% | |
| GATGCAACGCTGGAAGTTCC+CGG | - | chr1_2:66392756-66392775 | Msa0085970:intron | 55.0% | |
| !! | CGGGTTTGAGTTGTGGATGC+AGG | + | chr1_2:66393725-66393744 | None:intergenic | 55.0% |
| !! | AAGGCTGCGGGTTTGAGTTG+TGG | + | chr1_2:66393732-66393751 | None:intergenic | 55.0% |
| CACGTAGAGCACAGAGAGGT+TGG | + | chr1_2:66394043-66394062 | None:intergenic | 55.0% | |
| TGGTAGGAGCAGAGGGTGAA+TGG | - | chr1_2:66394086-66394105 | Msa0085970:intron | 55.0% | |
| CATGTGGACCAGAGCCTCTT+CGG | - | chr1_2:66394754-66394773 | Msa0085970:CDS | 55.0% | |
| ! | GACCAGAGCCTCTTCGGTTT+TGG | - | chr1_2:66394760-66394779 | Msa0085970:CDS | 55.0% |
| GAGTATCAAGATCGCTGCCC+AGG | - | chr1_2:66394963-66394982 | Msa0085970:CDS | 55.0% | |
| GATCGCTGCCCAGGTACTTA+AGG | - | chr1_2:66394972-66394991 | Msa0085970:CDS | 55.0% | |
| AGCCTTGGAAGACGTGGAGT+CGG | - | chr1_2:66395186-66395205 | Msa0085970:CDS | 55.0% | |
| ACGTGGAGTCGGTCTTGAGA+AGG | - | chr1_2:66395197-66395216 | Msa0085970:CDS | 55.0% | |
| GATGGAGGAACGTAAGCTGC+TGG | - | chr1_2:66396309-66396328 | Msa0085970:CDS | 55.0% | |
| !! | CGGAACTCAGGTGGCTCTGA+TGG | - | chr1_2:66391387-66391406 | Msa0085970:intron | 60.0% |
| ! | GCAGCTGACTCCACAGTCTC+AGG | + | chr1_2:66391427-66391446 | None:intergenic | 60.0% |
| AAAGCAGCTTCTGCAGCCGC+CGG | - | chr1_2:66391490-66391509 | Msa0085970:CDS | 60.0% | |
| ! | CAGAGCGTTTGGAGGCAGTC+AGG | - | chr1_2:66391803-66391822 | Msa0085970:CDS | 60.0% |
| AGCGTTTGGAGGCAGTCAGG+AGG | - | chr1_2:66391806-66391825 | Msa0085970:CDS | 60.0% | |
| AACCGGCTGCTGTGCCTTCT+AGG | - | chr1_2:66392541-66392560 | Msa0085970:intron | 60.0% | |
| GCTGGAAGTTCCCGGTCTAC+TGG | - | chr1_2:66392764-66392783 | Msa0085970:intron | 60.0% | |
| ! | GACCGACTCCACGTCTTCCA+AGG | + | chr1_2:66395191-66395210 | None:intergenic | 60.0% |
| !! | TGGTGAGGGCGTTTGTGTCC+AGG | - | chr1_2:66395231-66395250 | Msa0085970:intron | 60.0% |
| ! | TGCAGCCGCCGGAAGTACAC+CGG | - | chr1_2:66391501-66391520 | Msa0085970:CDS | 65.0% |
| ! | GGCCTAGAAGGCACAGCAGC+CGG | + | chr1_2:66392546-66392565 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 66391304 | 66396363 | 66391304 | ID=Msa0085970;Name=Msa0085970 |
| chr1_2 | mRNA | 66391304 | 66396363 | 66391304 | ID=Msa0085970-mRNA-1;Parent=Msa0085970;Name=Msa0085970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.18|0.08|1|1|1|12|0|820 |
| chr1_2 | exon | 66395823 | 66396363 | 66395823 | ID=Msa0085970-mRNA-1:exon:22474;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66394708 | 66395228 | 66394708 | ID=Msa0085970-mRNA-1:exon:22473;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66394510 | 66394617 | 66394510 | ID=Msa0085970-mRNA-1:exon:22472;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66394318 | 66394418 | 66394318 | ID=Msa0085970-mRNA-1:exon:22471;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66393363 | 66393453 | 66393363 | ID=Msa0085970-mRNA-1:exon:22470;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66393151 | 66393261 | 66393151 | ID=Msa0085970-mRNA-1:exon:22469;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66393011 | 66393076 | 66393011 | ID=Msa0085970-mRNA-1:exon:22468;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66392683 | 66392742 | 66392683 | ID=Msa0085970-mRNA-1:exon:22467;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66392001 | 66392558 | 66392001 | ID=Msa0085970-mRNA-1:exon:22466;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66391710 | 66391829 | 66391710 | ID=Msa0085970-mRNA-1:exon:22465;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66391490 | 66391609 | 66391490 | ID=Msa0085970-mRNA-1:exon:22464;Parent=Msa0085970-mRNA-1 |
| chr1_2 | exon | 66391304 | 66391369 | 66391304 | ID=Msa0085970-mRNA-1:exon:22463;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66395823 | 66396363 | 66395823 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66394708 | 66395228 | 66394708 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66394510 | 66394617 | 66394510 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66394318 | 66394418 | 66394318 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66393363 | 66393453 | 66393363 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66393151 | 66393261 | 66393151 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66393011 | 66393076 | 66393011 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66392683 | 66392742 | 66392683 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66392001 | 66392558 | 66392001 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66391710 | 66391829 | 66391710 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66391490 | 66391609 | 66391490 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| chr1_2 | CDS | 66391304 | 66391369 | 66391304 | ID=Msa0085970-mRNA-1:cds;Parent=Msa0085970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
