Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530770 | XP_013454677.1 | 97.984 | 248 | 5 | 0 | 1 | 248 | 1 | 248 | 2.27e-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530770 | sp|Q9ZW85|LEUD3_ARATH | 72.124 | 226 | 50 | 4 | 34 | 247 | 24 | 248 | 1.32e-103 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530770 | A0A072UHV5 | 97.984 | 248 | 5 | 0 | 1 | 248 | 1 | 248 | 1.09e-176 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085970 | Msa0530770 | 0.819265 | 1.272022e-52 | -8.615850e-47 |
| Msa0530770 | Msa0710070 | 0.808216 | 3.453387e-50 | -8.615850e-47 |
| Msa0530770 | Msa0969400 | 0.801397 | 9.177638e-49 | -8.615850e-47 |
| Msa0530770 | Msa0969700 | 0.804920 | 1.713317e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530770 | MtrunA17_Chr4g0003691 | 97.984 | 248 | 5 | 0 | 1 | 248 | 1 | 248 | 2.09e-180 | 494 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530770 | AT2G43090.1 | 72.124 | 226 | 50 | 4 | 34 | 247 | 24 | 248 | 1.34e-104 | 303 |
| Msa0530770 | AT2G43100.1 | 58.687 | 259 | 90 | 6 | 1 | 247 | 1 | 254 | 8.93e-95 | 279 |
| Msa0530770 | AT3G58990.1 | 60.400 | 250 | 84 | 4 | 3 | 247 | 13 | 252 | 1.35e-93 | 275 |
| Msa0530770 | AT2G43090.2 | 59.292 | 226 | 50 | 5 | 34 | 247 | 24 | 219 | 7.84e-78 | 234 |
Find 94 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATGTCCAAATGCTTCT+AGG | 0.223781 | 4_1:+4868160 | Msa0530770:three_prime_UTR |
| TAAGGATGAGTTATGTAATT+TGG | 0.237954 | 4_1:+4867966 | Msa0530770:three_prime_UTR |
| TATTTAATATTAGGTGCTTC+TGG | 0.297737 | 4_1:+4863426 | Msa0530770:intron |
| AGAGAGTGAGAGTTTGTTAG+AGG | 0.307987 | 4_1:-4862172 | None:intergenic |
| TGTTAGAGGGAGTGAAGGTT+AGG | 0.318499 | 4_1:-4862158 | None:intergenic |
| CACGGTCTCTGCTACGTTGT+TGG | 0.348960 | 4_1:+4862333 | Msa0530770:CDS |
| ATCATCGGTGGTGCTAATTT+CGG | 0.350557 | 4_1:+4862522 | Msa0530770:CDS |
| CGAATCAGGAAGTCCGATTA+AGG | 0.352628 | 4_1:-4862448 | None:intergenic |
| TAAACATGCAGCAGTAGCTT+TGG | 0.368122 | 4_1:+4867876 | Msa0530770:intron |
| TGGCGGCTGCTTATGCGTTC+CGG | 0.389379 | 4_1:-4862038 | None:intergenic |
| AAGGAGTTGGATTGAAATGA+AGG | 0.389865 | 4_1:-4862225 | None:intergenic |
| GGAGTGAAGGTTAGGGTTTG+TGG | 0.392555 | 4_1:-4862150 | None:intergenic |
| TCTATGTTCCTAGAAGCATT+TGG | 0.399646 | 4_1:-4868168 | None:intergenic |
| CACCAGTTGCCACTGAGTTC+CGG | 0.402008 | 4_1:-4863491 | None:intergenic |
| AGTATCAGTTGAAGCCGATT+GGG | 0.403012 | 4_1:+4863625 | Msa0530770:CDS |
| AATCGTACGCTGTACGAATC+AGG | 0.403494 | 4_1:-4862462 | None:intergenic |
| GAACACGCTCCGGTCGCATT+AGG | 0.405877 | 4_1:+4862561 | Msa0530770:CDS |
| GATGCGGCGGTGGTGGTAAC+GGG | 0.413698 | 4_1:-4862303 | None:intergenic |
| GTTAGAGGGAGTGAAGGTTA+GGG | 0.414545 | 4_1:-4862157 | None:intergenic |
| TTCCGGAACTCAGTGGCAAC+TGG | 0.415620 | 4_1:+4863489 | Msa0530770:CDS |
| TTTAGGAATATATAATGTTA+AGG | 0.419931 | 4_1:+4868008 | Msa0530770:three_prime_UTR |
| TAACGGGAGAAGGTGGCGCT+TGG | 0.423356 | 4_1:-4862287 | None:intergenic |
| AAACATGCAGCAGTAGCTTT+GGG | 0.425477 | 4_1:+4867877 | Msa0530770:intron |
| AACGGGAGAAGGTGGCGCTT+GGG | 0.434028 | 4_1:-4862286 | None:intergenic |
| CTTGTCATGCAGCTTTGTTA+AGG | 0.443638 | 4_1:+4867948 | Msa0530770:three_prime_UTR |
| TTGTGGAGAGGTGGTGGAGA+TGG | 0.445755 | 4_1:-4862253 | None:intergenic |
| TGAGTGGAATCCGTGAAAAC+AGG | 0.449688 | 4_1:-4867919 | None:intergenic |
| TATTAAAACATTTGAAACTT+CGG | 0.449748 | 4_1:+4868035 | Msa0530770:three_prime_UTR |
| GGAACATAGAAGTGCATGCC+TGG | 0.453534 | 4_1:+4868181 | Msa0530770:three_prime_UTR |
| CCAAGCTTCTGATACTCATC+AGG | 0.459176 | 4_1:-4862417 | None:intergenic |
| TTCTGGTGCTGCTGCTGTTG+TGG | 0.463567 | 4_1:+4863443 | Msa0530770:CDS |
| TGATGCGGCGGTGGTGGTAA+CGG | 0.466069 | 4_1:-4862304 | None:intergenic |
| CGGTTGAGCTTGAGGAGAAT+CGG | 0.466189 | 4_1:+4863577 | Msa0530770:CDS |
| TTGAAGCCGATTGGGGATGC+TGG | 0.468277 | 4_1:+4863633 | Msa0530770:CDS |
| GAGTTTGTTAGAGGGAGTGA+AGG | 0.468716 | 4_1:-4862163 | None:intergenic |
| ATCAGGATTGGAAGGGACTA+AGG | 0.474009 | 4_1:-4862400 | None:intergenic |
| GCGGTGGTGGTAACGGGAGA+AGG | 0.474823 | 4_1:-4862297 | None:intergenic |
| ATCTTCTCGTGAACACGCTC+CGG | 0.476907 | 4_1:+4862551 | Msa0530770:CDS |
| ATCCCACCAGCCTCAATCAC+TGG | 0.477421 | 4_1:-4863657 | None:intergenic |
| ACTAAGGTAAGATGCTCAGC+AGG | 0.482246 | 4_1:-4862384 | None:intergenic |
| TTTGCTTATGCTAGGAAGAC+TGG | 0.483245 | 4_1:+4863681 | Msa0530770:CDS |
| AAAATACGAACTTTAAATCT+GGG | 0.492049 | 4_1:-4868240 | None:intergenic |
| GAGAGTGAGAGTTTGTTAGA+GGG | 0.494890 | 4_1:-4862171 | None:intergenic |
| GTGATGAAAGTGATTATCAC+TGG | 0.509930 | 4_1:-4862071 | None:intergenic |
| GTGGGATCTTTGCTTATGCT+AGG | 0.511998 | 4_1:+4863673 | Msa0530770:CDS |
| CTCAACCGTCACCACATCTC+CGG | 0.514229 | 4_1:-4863562 | None:intergenic |
| GAAGGTTAGGGTTTGTGGAA+TGG | 0.515743 | 4_1:-4862145 | None:intergenic |
| AGCGTACGATTCGTTGAATC+CGG | 0.517336 | 4_1:+4862474 | Msa0530770:CDS |
| GAGTATCAGTTGAAGCCGAT+TGG | 0.521430 | 4_1:+4863624 | Msa0530770:CDS |
| CTTCTGATACTCATCAGGAT+TGG | 0.522070 | 4_1:-4862412 | None:intergenic |
| GCTGGTCCAGTGATTGAGGC+TGG | 0.523054 | 4_1:+4863651 | Msa0530770:CDS |
| TGATACTCATCAGGATTGGA+AGG | 0.533166 | 4_1:-4862408 | None:intergenic |
| CCTGATGAGTATCAGAAGCT+TGG | 0.534753 | 4_1:+4862417 | Msa0530770:CDS |
| TGTGATTTGTGGAGAGGTGG+TGG | 0.542156 | 4_1:-4862259 | None:intergenic |
| CGGTTGATTAATCATACGAC+TGG | 0.545585 | 4_1:+4863597 | Msa0530770:CDS |
| GGATGCTGGTCCAGTGATTG+AGG | 0.546125 | 4_1:+4863647 | Msa0530770:CDS |
| TTGTGTGAGGAGTGTCGTAC+CGG | 0.548705 | 4_1:+4863543 | Msa0530770:CDS |
| GCTTGGGCGCGTGTGATTTG+TGG | 0.551878 | 4_1:-4862270 | None:intergenic |
| GGTCACCTTTCAACTAATCC+AGG | 0.552242 | 4_1:-4868199 | None:intergenic |
| GTCCAGTGATTGAGGCTGGT+GGG | 0.557956 | 4_1:+4863655 | Msa0530770:CDS |
| ACGAAATACTCTATCATCAT+CGG | 0.558429 | 4_1:+4862507 | Msa0530770:CDS |
| ACTGGACCAGCATCCCCAAT+CGG | 0.559242 | 4_1:-4863639 | None:intergenic |
| AAAAGATGATGCGGCGGTGG+TGG | 0.559959 | 4_1:-4862310 | None:intergenic |
| AACACAATACCTCATCTAGT+AGG | 0.560121 | 4_1:-4863711 | None:intergenic |
| TATCAAATACCTAATGCGAC+CGG | 0.561510 | 4_1:-4862570 | None:intergenic |
| GGTCCAGTGATTGAGGCTGG+TGG | 0.569487 | 4_1:+4863654 | Msa0530770:CDS |
| AAGGTGACCGATTAAAAGAT+CGG | 0.574361 | 4_1:+4868213 | Msa0530770:three_prime_UTR |
| GTGAAAAGATGATGCGGCGG+TGG | 0.581151 | 4_1:-4862313 | None:intergenic |
| GGTGGTGCTAATTTCGGATG+CGG | 0.581372 | 4_1:+4862528 | Msa0530770:CDS |
| TGGTGCTGCTGCTGTTGTGG+CGG | 0.582109 | 4_1:+4863446 | Msa0530770:CDS |
| GTGGTGGTAACGGGAGAAGG+TGG | 0.582213 | 4_1:-4862294 | None:intergenic |
| TGTGGTGACGGTTGAGCTTG+AGG | 0.593034 | 4_1:+4863569 | Msa0530770:CDS |
| GCGTGTGATTTGTGGAGAGG+TGG | 0.595387 | 4_1:-4862262 | None:intergenic |
| GAACTCAGTGGCAACTGGTG+AGG | 0.610746 | 4_1:+4863494 | Msa0530770:CDS |
| CTCAGCAGGGATGATTTGAT+CGG | 0.613011 | 4_1:-4862370 | None:intergenic |
| GTCAGAGACGAGGTTGTGTG+AGG | 0.618139 | 4_1:+4863530 | Msa0530770:CDS |
| GTATCAGTTGAAGCCGATTG+GGG | 0.620930 | 4_1:+4863626 | Msa0530770:CDS |
| GGCGCGTGTGATTTGTGGAG+AGG | 0.623922 | 4_1:-4862265 | None:intergenic |
| GATTAATCATACGACTGGAA+AGG | 0.629279 | 4_1:+4863602 | Msa0530770:CDS |
| GGCATGATTCCTACTAGATG+AGG | 0.630898 | 4_1:+4863702 | Msa0530770:CDS |
| GCATGCCTGGATTAGTTGAA+AGG | 0.636050 | 4_1:+4868194 | Msa0530770:three_prime_UTR |
| AACTGGTGAGGTGTATCCAT+TGG | 0.639904 | 4_1:+4863506 | Msa0530770:CDS |
| TTGTGGCGGAATCATATGCA+AGG | 0.644779 | 4_1:+4863460 | Msa0530770:CDS |
| GATACTCATCAGGATTGGAA+GGG | 0.648665 | 4_1:-4862407 | None:intergenic |
| AACCTCGTCTCTGACTCCAA+TGG | 0.652007 | 4_1:-4863522 | None:intergenic |
| GGAGTGTCGTACCGGAGATG+TGG | 0.658292 | 4_1:+4863551 | Msa0530770:CDS |
| AGCAGAACAACTCAAAACGA+TGG | 0.671545 | 4_1:+4862101 | Msa0530770:exon |
| AAATACTCTATCATCATCGG+TGG | 0.672742 | 4_1:+4862510 | Msa0530770:CDS |
| CTAAGGTAAGATGCTCAGCA+GGG | 0.679779 | 4_1:-4862383 | None:intergenic |
| GCATGACAAGAGCATCTGAG+TGG | 0.686059 | 4_1:-4867935 | None:intergenic |
| ATCCATTGGAGTCAGAGACG+AGG | 0.688602 | 4_1:+4863520 | Msa0530770:CDS |
| GAGACCGTGAAAAGATGATG+CGG | 0.688746 | 4_1:-4862319 | None:intergenic |
| ACCGTGAAAAGATGATGCGG+CGG | 0.701812 | 4_1:-4862316 | None:intergenic |
| TCGTACCGGAGATGTGGTGA+CGG | 0.731800 | 4_1:+4863557 | Msa0530770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | + | chr4_1:4867294-4867313 | Msa0530770:intron | 0.0% |
| !!! | TATATTTTTACATTCTTTTT+TGG | + | chr4_1:4864321-4864340 | Msa0530770:intron | 10.0% |
| !! | AAAATCTAAATTATTAAGTA+GGG | - | chr4_1:4865360-4865379 | None:intergenic | 10.0% |
| !! | TAAAATCTAAATTATTAAGT+AGG | - | chr4_1:4865361-4865380 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTTTGGAATAA+AGG | - | chr4_1:4865425-4865444 | None:intergenic | 10.0% |
| !! | TTTATTCCAAAAATAAAAAA+AGG | + | chr4_1:4865424-4865443 | Msa0530770:intron | 10.0% |
| !! | ACTGTTACATATTTAATATT+AGG | + | chr4_1:4863417-4863436 | Msa0530770:intron | 15.0% |
| !!! | TTTTTAATTGTTTGATACAA+TGG | + | chr4_1:4863758-4863777 | Msa0530770:intron | 15.0% |
| !! | TAATGTCATAAAATTAATTC+TGG | + | chr4_1:4864267-4864286 | Msa0530770:intron | 15.0% |
| !! | TTTATTAATTAAGCGTATAA+AGG | - | chr4_1:4864692-4864711 | None:intergenic | 15.0% |
| !!! | TGTAAATAAAATGAGTTTTT+AGG | + | chr4_1:4864912-4864931 | Msa0530770:intron | 15.0% |
| !!! | GTAAATAAAATGAGTTTTTA+GGG | + | chr4_1:4864913-4864932 | Msa0530770:intron | 15.0% |
| !!! | ATTTTAAACTTCATAAACTA+AGG | + | chr4_1:4865375-4865394 | Msa0530770:intron | 15.0% |
| !! | AAGAAATTAAAAAAAATGCA+TGG | + | chr4_1:4865751-4865770 | Msa0530770:intron | 15.0% |
| !! | ATAATTGTAACTCTTAAAAT+TGG | - | chr4_1:4865970-4865989 | None:intergenic | 15.0% |
| !!! | ACACTTTTTATTTGAAAAAT+AGG | + | chr4_1:4866125-4866144 | Msa0530770:intron | 15.0% |
| !!! | TTTTATACATAAATGCTTAT+AGG | + | chr4_1:4866674-4866693 | Msa0530770:intron | 15.0% |
| !! | TTTAGGAATATATAATGTTA+AGG | + | chr4_1:4868008-4868027 | Msa0530770:three_prime_UTR | 15.0% |
| !!! | TATTAAAACATTTGAAACTT+CGG | + | chr4_1:4868035-4868054 | Msa0530770:three_prime_UTR | 15.0% |
| !!! | TTATCACTGGTTTTTTTTTT+TGG | - | chr4_1:4862061-4862080 | None:intergenic | 20.0% |
| !! | ACTTCAAATAGAATCAATTA+TGG | - | chr4_1:4862727-4862746 | None:intergenic | 20.0% |
| !!! | TTCTATTTGAAGTTAGAAAT+TGG | + | chr4_1:4862734-4862753 | Msa0530770:intron | 20.0% |
| !! | TTTACAATAATTAGTTACAC+TGG | - | chr4_1:4863284-4863303 | None:intergenic | 20.0% |
| !! | TAACTATTACATTTGATGTT+AGG | + | chr4_1:4863304-4863323 | Msa0530770:intron | 20.0% |
| !! | AATGGACAAAAATAAAAGTT+TGG | - | chr4_1:4864451-4864470 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGTTTTTCTCTAT+GGG | + | chr4_1:4864826-4864845 | Msa0530770:intron | 20.0% |
| !!! | TCAAAGTTTTTGTTTACATT+TGG | - | chr4_1:4864862-4864881 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGGAATAAAGG+AGG | - | chr4_1:4865422-4865441 | None:intergenic | 20.0% |
| !! | TTGTCTAAAAATATTGTTCA+GGG | + | chr4_1:4865486-4865505 | Msa0530770:intron | 20.0% |
| !!! | TACAGATTATTAGTTTTGAT+TGG | - | chr4_1:4866191-4866210 | None:intergenic | 20.0% |
| !!! | TCAATTTGTTTTCTGTTTTA+GGG | - | chr4_1:4866244-4866263 | None:intergenic | 20.0% |
| !! | TTCCATATCATATTTGATTA+TGG | + | chr4_1:4866741-4866760 | Msa0530770:intron | 20.0% |
| !! | ATCCATAATCAAATATGATA+TGG | - | chr4_1:4866746-4866765 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTGAATCTAAAA+TGG | - | chr4_1:4866834-4866853 | None:intergenic | 20.0% |
| !! | TTAGATTCACAAAATGAATT+AGG | + | chr4_1:4866836-4866855 | Msa0530770:intron | 20.0% |
| !! | TTCTTATAGTTCATTCTATT+AGG | + | chr4_1:4867054-4867073 | Msa0530770:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | + | chr4_1:4867462-4867481 | Msa0530770:intron | 20.0% |
| ! | AGTTAGATTTAGTGTATGTT+TGG | + | chr4_1:4862611-4862630 | Msa0530770:intron | 25.0% |
| !!! | TGTTTGGTTTGATTTCTATA+CGG | + | chr4_1:4862627-4862646 | Msa0530770:intron | 25.0% |
| ! | TCAAATAGAATCAATTATGG+AGG | - | chr4_1:4862724-4862743 | None:intergenic | 25.0% |
| !!! | ACTTTCAACTCACTTTTATT+CGG | - | chr4_1:4862840-4862859 | None:intergenic | 25.0% |
| !! | TTCACTTCCAAAATCAATTT+TGG | - | chr4_1:4863065-4863084 | None:intergenic | 25.0% |
| ! | GTCTAACTTAAGTGTATATT+TGG | - | chr4_1:4863202-4863221 | None:intergenic | 25.0% |
| ! | GTTACAATAATTAGTTACAC+TGG | - | chr4_1:4863395-4863414 | None:intergenic | 25.0% |
| ! | TATTTAATATTAGGTGCTTC+TGG | + | chr4_1:4863426-4863445 | Msa0530770:intron | 25.0% |
| ! | TTAATTGTTTGATACAATGG+TGG | + | chr4_1:4863761-4863780 | Msa0530770:intron | 25.0% |
| !! | AGCAATTTTAGATGAGATTA+AGG | + | chr4_1:4864011-4864030 | Msa0530770:intron | 25.0% |
| !! | GCAATTTTAGATGAGATTAA+GGG | + | chr4_1:4864012-4864031 | Msa0530770:intron | 25.0% |
| ! | TTAAAATTCTGTTACAAGAG+TGG | + | chr4_1:4864109-4864128 | Msa0530770:intron | 25.0% |
| ! | TAAAATTCTGTTACAAGAGT+GGG | + | chr4_1:4864110-4864129 | Msa0530770:intron | 25.0% |
| !!! | ATGTGTAATATTGGTTTACA+CGG | + | chr4_1:4864168-4864187 | Msa0530770:intron | 25.0% |
| ! | AAGGAAGTAACAAATAGTAA+TGG | - | chr4_1:4864469-4864488 | None:intergenic | 25.0% |
| !! | AACACTTTTAGCATTGTAAT+AGG | - | chr4_1:4864546-4864565 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTGTTTTTCTCTA+TGG | + | chr4_1:4864825-4864844 | Msa0530770:intron | 25.0% |
| !!! | CTTTTTTGTTTTTCTCTATG+GGG | + | chr4_1:4864827-4864846 | Msa0530770:intron | 25.0% |
| ! | GTAAATTGTGAAGATTCAAA+AGG | - | chr4_1:4865072-4865091 | None:intergenic | 25.0% |
| ! | TTGAATCTTCACAATTTACA+CGG | + | chr4_1:4865073-4865092 | Msa0530770:intron | 25.0% |
| !!! | ATGGAGCCTTTTTTTATTTT+TGG | - | chr4_1:4865433-4865452 | None:intergenic | 25.0% |
| ! | AAATAAAAAAAGGCTCCATT+TGG | + | chr4_1:4865434-4865453 | Msa0530770:intron | 25.0% |
| !! | TTTTCAAAAGCTTAACCAAA+TGG | - | chr4_1:4865452-4865471 | None:intergenic | 25.0% |
| !!! | TTTGGTTAAGCTTTTGAAAA+CGG | + | chr4_1:4865452-4865471 | Msa0530770:intron | 25.0% |
| ! | GTTGTCTAAAAATATTGTTC+AGG | + | chr4_1:4865485-4865504 | Msa0530770:intron | 25.0% |
| ! | ATTGTTCAGGGATATTTATT+AGG | + | chr4_1:4865498-4865517 | Msa0530770:intron | 25.0% |
| !!! | ACCAGAAGTTATTTTTTGTT+TGG | + | chr4_1:4865523-4865542 | Msa0530770:intron | 25.0% |
| ! | ACCAAACAAAAAATAACTTC+TGG | - | chr4_1:4865527-4865546 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTCAAAATT+TGG | - | chr4_1:4865655-4865674 | None:intergenic | 25.0% |
| ! | AAAGTAAACATTTCCATAGA+GGG | - | chr4_1:4865702-4865721 | None:intergenic | 25.0% |
| ! | TAACTCTTAAAATTGGAGTT+GGG | - | chr4_1:4865963-4865982 | None:intergenic | 25.0% |
| !!! | AATAAAAAGTGTTCCTTCTT+TGG | - | chr4_1:4866117-4866136 | None:intergenic | 25.0% |
| ! | ACTAATAATCTGTATAAGAC+AGG | + | chr4_1:4866197-4866216 | Msa0530770:intron | 25.0% |
| ! | CTAATAATCTGTATAAGACA+GGG | + | chr4_1:4866198-4866217 | Msa0530770:intron | 25.0% |
| !!! | GTCAATTTGTTTTCTGTTTT+AGG | - | chr4_1:4866245-4866264 | None:intergenic | 25.0% |
| ! | TACTGTTGAGATATAGATAT+AGG | - | chr4_1:4866335-4866354 | None:intergenic | 25.0% |
| ! | ATATTCTGAGTTTCATTCTT+AGG | - | chr4_1:4866454-4866473 | None:intergenic | 25.0% |
| ! | AGAATGAAACTCAGAATATA+CGG | + | chr4_1:4866455-4866474 | Msa0530770:intron | 25.0% |
| ! | TGACTTATCAACAACTAATT+TGG | + | chr4_1:4866490-4866509 | Msa0530770:intron | 25.0% |
| ! | GACTTATCAACAACTAATTT+GGG | + | chr4_1:4866491-4866510 | Msa0530770:intron | 25.0% |
| ! | TATACATAAATGCTTATAGG+AGG | + | chr4_1:4866677-4866696 | Msa0530770:intron | 25.0% |
| ! | ATTAACCTGTTTACTTAAAC+AGG | + | chr4_1:4866711-4866730 | Msa0530770:intron | 25.0% |
| !!! | AAATTTGTTGCTTATTGCAA+TGG | + | chr4_1:4866866-4866885 | Msa0530770:intron | 25.0% |
| ! | TAAGGATGAGTTATGTAATT+TGG | + | chr4_1:4867966-4867985 | Msa0530770:three_prime_UTR | 25.0% |
| !!! | TTAGAATTGTCGACTATTTT+AGG | + | chr4_1:4867991-4868010 | Msa0530770:three_prime_UTR | 25.0% |
| !! | GCATTTTACATTTGTCTATT+TGG | - | chr4_1:4868126-4868145 | None:intergenic | 25.0% |
| !!! | TCACTGGTTTTTTTTTTTGG+CGG | - | chr4_1:4862058-4862077 | None:intergenic | 30.0% |
| !!! | GTATTTCGTTTTAGTTTCAC+CGG | - | chr4_1:4862496-4862515 | None:intergenic | 30.0% |
| ACGAAATACTCTATCATCAT+CGG | + | chr4_1:4862507-4862526 | Msa0530770:CDS | 30.0% | |
| ATACGGATCAAAATTGAGTA+TGG | + | chr4_1:4862644-4862663 | Msa0530770:intron | 30.0% | |
| !! | AGAATTGTTTCTGACATGTT+TGG | + | chr4_1:4862673-4862692 | Msa0530770:intron | 30.0% |
| !!! | ACCATGTATGTTTAGTTTTG+CGG | + | chr4_1:4862785-4862804 | Msa0530770:intron | 30.0% |
| !! | AGTAGAATTGATTTTGTCTC+TGG | - | chr4_1:4862973-4862992 | None:intergenic | 30.0% |
| !!! | ATCAATTTTGGTTCCACTTT+TGG | - | chr4_1:4863053-4863072 | None:intergenic | 30.0% |
| !! | AGTGGAACCAAAATTGATTT+TGG | + | chr4_1:4863055-4863074 | Msa0530770:intron | 30.0% |
| !! | ATTTTGGAAGTGAACTGATT+TGG | + | chr4_1:4863071-4863090 | Msa0530770:intron | 30.0% |
| ! | CTTTTGAGCGATTTATGTTT+GGG | - | chr4_1:4863159-4863178 | None:intergenic | 30.0% |
| ! | ACTTTTGAGCGATTTATGTT+TGG | - | chr4_1:4863160-4863179 | None:intergenic | 30.0% |
| GTTAAGCTACTTGTTCTAAT+TGG | - | chr4_1:4863258-4863277 | None:intergenic | 30.0% | |
| !!! | CATATGCAAGGATTTTTTTC+CGG | + | chr4_1:4863472-4863491 | Msa0530770:CDS | 30.0% |
| CATGTGATCACATTATTGAT+AGG | + | chr4_1:4863899-4863918 | Msa0530770:intron | 30.0% | |
| TTATTGATAGGATCCTTTAC+TGG | + | chr4_1:4863911-4863930 | Msa0530770:intron | 30.0% | |
| TCTCAATAGTGAATTCTCAT+TGG | + | chr4_1:4864141-4864160 | Msa0530770:intron | 30.0% | |
| ATTGGTTGCATGTGTAATAT+TGG | + | chr4_1:4864159-4864178 | Msa0530770:intron | 30.0% | |
| TCGTATTAGATACATGTCTT+TGG | + | chr4_1:4864210-4864229 | Msa0530770:intron | 30.0% | |
| CGTATTAGATACATGTCTTT+GGG | + | chr4_1:4864211-4864230 | Msa0530770:intron | 30.0% | |
| !! | TCTGGCTAAAATTTAGTTTG+AGG | + | chr4_1:4864285-4864304 | Msa0530770:intron | 30.0% |
| !! | TAAAATTTAGTTTGAGGTGG+TGG | + | chr4_1:4864291-4864310 | Msa0530770:intron | 30.0% |
| CTGCTTCATTTCATTATTCT+TGG | + | chr4_1:4864381-4864400 | Msa0530770:intron | 30.0% | |
| AACTATAGTATCATGATTGG+AGG | - | chr4_1:4864521-4864540 | None:intergenic | 30.0% | |
| GAGAACTATAGTATCATGAT+TGG | - | chr4_1:4864524-4864543 | None:intergenic | 30.0% | |
| TTTCTACCAACATGATAACT+AGG | + | chr4_1:4864566-4864585 | Msa0530770:intron | 30.0% | |
| !! | TTTTTCACTTTTCACTGAGT+TGG | + | chr4_1:4864765-4864784 | Msa0530770:intron | 30.0% |
| AGTTAACCATTTCACTATTC+AGG | - | chr4_1:4864941-4864960 | None:intergenic | 30.0% | |
| TGAATCTTCACAATTTACAC+GGG | + | chr4_1:4865074-4865093 | Msa0530770:intron | 30.0% | |
| GACATGTTGCTATGAAAATA+TGG | + | chr4_1:4865114-4865133 | Msa0530770:intron | 30.0% | |
| TATGAAAGTTTACAACAGCT+AGG | - | chr4_1:4865164-4865183 | None:intergenic | 30.0% | |
| ! | ACTTTCATATTTGTTGCAGT+AGG | + | chr4_1:4865175-4865194 | Msa0530770:intron | 30.0% |
| GTCTCTCATTATATGAGATA+TGG | + | chr4_1:4865559-4865578 | Msa0530770:intron | 30.0% | |
| ACCATCTCAAAATTTGGATT+GGG | - | chr4_1:4865649-4865668 | None:intergenic | 30.0% | |
| TACCATCTCAAAATTTGGAT+TGG | - | chr4_1:4865650-4865669 | None:intergenic | 30.0% | |
| CAAAGTAAACATTTCCATAG+AGG | - | chr4_1:4865703-4865722 | None:intergenic | 30.0% | |
| GTAACTCTTAAAATTGGAGT+TGG | - | chr4_1:4865964-4865983 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTGTTTGTTTAGT+TGG | - | chr4_1:4866270-4866289 | None:intergenic | 30.0% |
| TATAGGAGAATTAGTCAGTT+AGG | - | chr4_1:4866318-4866337 | None:intergenic | 30.0% | |
| TAGGAGAATCCATAAAATTC+TGG | + | chr4_1:4866369-4866388 | Msa0530770:intron | 30.0% | |
| AATGACCTGTTTAAGTAAAC+AGG | - | chr4_1:4866719-4866738 | None:intergenic | 30.0% | |
| TCAGCTGCTATATTTATTAG+TGG | + | chr4_1:4866911-4866930 | Msa0530770:intron | 30.0% | |
| CAGCTGCTATATTTATTAGT+GGG | + | chr4_1:4866912-4866931 | Msa0530770:intron | 30.0% | |
| TTGACTGATGAAAAGTAGTT+TGG | + | chr4_1:4867000-4867019 | Msa0530770:intron | 30.0% | |
| AAAAGCAACTTCACAATCTA+TGG | - | chr4_1:4867112-4867131 | None:intergenic | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | - | chr4_1:4867454-4867473 | None:intergenic | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | - | chr4_1:4867455-4867474 | None:intergenic | 30.0% | |
| ! | AGAACAAAGATGAGATTTTG+TGG | + | chr4_1:4867496-4867515 | Msa0530770:intron | 30.0% |
| GTGATGAAAGTGATTATCAC+TGG | - | chr4_1:4862074-4862093 | None:intergenic | 35.0% | |
| AAGGAGTTGGATTGAAATGA+AGG | - | chr4_1:4862228-4862247 | None:intergenic | 35.0% | |
| !! | CTTGGTTCTTTTGCCTTAAT+CGG | + | chr4_1:4862435-4862454 | Msa0530770:CDS | 35.0% |
| AAATACTCTATCATCATCGG+TGG | + | chr4_1:4862510-4862529 | Msa0530770:CDS | 35.0% | |
| TATCAAATACCTAATGCGAC+CGG | - | chr4_1:4862573-4862592 | None:intergenic | 35.0% | |
| ACCGCAAAACTAAACATACA+TGG | - | chr4_1:4862789-4862808 | None:intergenic | 35.0% | |
| AGAATCGATGTTGTCATGTT+TGG | - | chr4_1:4863005-4863024 | None:intergenic | 35.0% | |
| !! | TCTACACCTCTAGAATCATT+TGG | + | chr4_1:4863022-4863041 | Msa0530770:intron | 35.0% |
| GCATGTTGTATATATTCCAG+CGG | - | chr4_1:4863338-4863357 | None:intergenic | 35.0% | |
| ! | GCTATGTTACTTGCTCTAAT+TGG | - | chr4_1:4863369-4863388 | None:intergenic | 35.0% |
| GATTAATCATACGACTGGAA+AGG | + | chr4_1:4863602-4863621 | Msa0530770:CDS | 35.0% | |
| AACACAATACCTCATCTAGT+AGG | - | chr4_1:4863714-4863733 | None:intergenic | 35.0% | |
| TTGTTTGATACAATGGTGGT+AGG | + | chr4_1:4863765-4863784 | Msa0530770:intron | 35.0% | |
| ACAATGGTGGTAGGAAAATT+AGG | + | chr4_1:4863774-4863793 | Msa0530770:intron | 35.0% | |
| CAATGGTGGTAGGAAAATTA+GGG | + | chr4_1:4863775-4863794 | Msa0530770:intron | 35.0% | |
| ACTCACAATGAGTAGCAAAA+AGG | - | chr4_1:4863937-4863956 | None:intergenic | 35.0% | |
| AGTAATAGATTCTCACTGGA+TGG | - | chr4_1:4864067-4864086 | None:intergenic | 35.0% | |
| ACGAAGTAATAGATTCTCAC+TGG | - | chr4_1:4864071-4864090 | None:intergenic | 35.0% | |
| ATTAGATACATGTCTTTGGG+CGG | + | chr4_1:4864214-4864233 | Msa0530770:intron | 35.0% | |
| !! | GGCTAAAATTTAGTTTGAGG+TGG | + | chr4_1:4864288-4864307 | Msa0530770:intron | 35.0% |
| !! | CACTTCTAAAGTGAGTTTCA+AGG | - | chr4_1:4864488-4864507 | None:intergenic | 35.0% |
| TAGTATCATGATTGGAGGAA+TGG | - | chr4_1:4864516-4864535 | None:intergenic | 35.0% | |
| GTTAGACCTAGTTATCATGT+TGG | - | chr4_1:4864575-4864594 | None:intergenic | 35.0% | |
| !!! | TAAAGGCTTTTGATTTGCGT+CGG | - | chr4_1:4864675-4864694 | None:intergenic | 35.0% |
| AACACTGCATGCTTTCTAAA+AGG | - | chr4_1:4864734-4864753 | None:intergenic | 35.0% | |
| TGAAATGGTTAACTAGCGAA+AGG | + | chr4_1:4864947-4864966 | Msa0530770:intron | 35.0% | |
| TTAACTAGCGAAAGGATGAA+TGG | + | chr4_1:4864955-4864974 | Msa0530770:intron | 35.0% | |
| TAGCTGACATAGAGAAGAAT+TGG | + | chr4_1:4865232-4865251 | Msa0530770:intron | 35.0% | |
| CACATCTTTCTACAGATCTA+TGG | + | chr4_1:4865258-4865277 | Msa0530770:intron | 35.0% | |
| TGGAGAATTAGTAAACTGCT+TGG | + | chr4_1:4865278-4865297 | Msa0530770:intron | 35.0% | |
| TTATTAAGTAGGGATACTCC+AGG | - | chr4_1:4865350-4865369 | None:intergenic | 35.0% | |
| AAACTAAGGTTCCGTTTAGT+TGG | + | chr4_1:4865389-4865408 | Msa0530770:intron | 35.0% | |
| !! | ACCCAATCCAAATTTTGAGA+TGG | + | chr4_1:4865645-4865664 | Msa0530770:intron | 35.0% |
| ATGGCATATCTTATCCAATG+TGG | - | chr4_1:4865874-4865893 | None:intergenic | 35.0% | |
| CCACTTATAAATAGATGGCA+TGG | - | chr4_1:4865893-4865912 | None:intergenic | 35.0% | |
| CCATGCCATCTATTTATAAG+TGG | + | chr4_1:4865890-4865909 | Msa0530770:intron | 35.0% | |
| TGCCATCTATTTATAAGTGG+TGG | + | chr4_1:4865893-4865912 | Msa0530770:intron | 35.0% | |
| GCCATCTATTTATAAGTGGT+GGG | + | chr4_1:4865894-4865913 | Msa0530770:intron | 35.0% | |
| ACCCACCACTTATAAATAGA+TGG | - | chr4_1:4865898-4865917 | None:intergenic | 35.0% | |
| !! | CCATATTGGTTCTCACATAT+AGG | - | chr4_1:4866015-4866034 | None:intergenic | 35.0% |
| CCTATATGTGAGAACCAATA+TGG | + | chr4_1:4866012-4866031 | Msa0530770:intron | 35.0% | |
| TATGTGAGAACCAATATGGA+TGG | + | chr4_1:4866016-4866035 | Msa0530770:intron | 35.0% | |
| !! | AGAGAATGGATTGTTTGAAC+TGG | + | chr4_1:4866050-4866069 | Msa0530770:intron | 35.0% |
| !! | TTCTTGATAGTGTAGCTGTT+AGG | + | chr4_1:4866074-4866093 | Msa0530770:intron | 35.0% |
| !! | TTCTTTGGAATCCGATTCTT+GGG | - | chr4_1:4866102-4866121 | None:intergenic | 35.0% |
| ! | AGAGACACTCCAGAATTTTA+TGG | - | chr4_1:4866381-4866400 | None:intergenic | 35.0% |
| ! | TAGGCTAGGATGATTTGTAA+TGG | - | chr4_1:4866435-4866454 | None:intergenic | 35.0% |
| !! | TCAGAATATACGGTTGCTTT+TGG | + | chr4_1:4866465-4866484 | Msa0530770:intron | 35.0% |
| TGGATTTGAATCTGTGCATT+TGG | + | chr4_1:4866761-4866780 | Msa0530770:intron | 35.0% | |
| ! | TTGCTTATTGCAATGGCTTT+TGG | + | chr4_1:4866873-4866892 | Msa0530770:intron | 35.0% |
| AATGTGTACTGCAATTGAAC+AGG | - | chr4_1:4866938-4866957 | None:intergenic | 35.0% | |
| ! | ATTGCAGTACACATTTTCTC+AGG | + | chr4_1:4866943-4866962 | Msa0530770:intron | 35.0% |
| TGTGTTCATAGTTGTCAAAG+CGG | + | chr4_1:4867179-4867198 | Msa0530770:intron | 35.0% | |
| GATTAGAGATCTAGAGATCT+AGG | - | chr4_1:4867416-4867435 | None:intergenic | 35.0% | |
| GCAAATATAAATGAACAGCC+AGG | - | chr4_1:4867775-4867794 | None:intergenic | 35.0% | |
| ! | AGAATTGTTGCCTGTTTTCA+CGG | + | chr4_1:4867909-4867928 | Msa0530770:three_prime_UTR | 35.0% |
| TTAGATGTCCAAATGCTTCT+AGG | + | chr4_1:4868160-4868179 | Msa0530770:three_prime_UTR | 35.0% | |
| !! | TCTATGTTCCTAGAAGCATT+TGG | - | chr4_1:4868171-4868190 | None:intergenic | 35.0% |
| AAGGTGACCGATTAAAAGAT+CGG | + | chr4_1:4868213-4868232 | Msa0530770:three_prime_UTR | 35.0% | |
| AGCAGAACAACTCAAAACGA+TGG | + | chr4_1:4862101-4862120 | Msa0530770:exon | 40.0% | |
| !! | GAGAGTGAGAGTTTGTTAGA+GGG | - | chr4_1:4862174-4862193 | None:intergenic | 40.0% |
| !! | AGAGAGTGAGAGTTTGTTAG+AGG | - | chr4_1:4862175-4862194 | None:intergenic | 40.0% |
| GATACTCATCAGGATTGGAA+GGG | - | chr4_1:4862410-4862429 | None:intergenic | 40.0% | |
| TGATACTCATCAGGATTGGA+AGG | - | chr4_1:4862411-4862430 | None:intergenic | 40.0% | |
| CTTCTGATACTCATCAGGAT+TGG | - | chr4_1:4862415-4862434 | None:intergenic | 40.0% | |
| ! | ATCATCGGTGGTGCTAATTT+CGG | + | chr4_1:4862522-4862541 | Msa0530770:CDS | 40.0% |
| GAGAAGCCAAATGATTCTAG+AGG | - | chr4_1:4863031-4863050 | None:intergenic | 40.0% | |
| ! | TCATTTGGCTTCTCCAAAAG+TGG | + | chr4_1:4863037-4863056 | Msa0530770:intron | 40.0% |
| !! | GTGAACTGATTTGGCATGTT+TGG | + | chr4_1:4863080-4863099 | Msa0530770:intron | 40.0% |
| !!! | GATTTTTTTCCGGAACTCAG+TGG | + | chr4_1:4863482-4863501 | Msa0530770:CDS | 40.0% |
| CGGTTGATTAATCATACGAC+TGG | + | chr4_1:4863597-4863616 | Msa0530770:CDS | 40.0% | |
| AGTATCAGTTGAAGCCGATT+GGG | + | chr4_1:4863625-4863644 | Msa0530770:CDS | 40.0% | |
| TTTGCTTATGCTAGGAAGAC+TGG | + | chr4_1:4863681-4863700 | Msa0530770:CDS | 40.0% | |
| AGTAGCAAAAAGGCCAGTAA+AGG | - | chr4_1:4863927-4863946 | None:intergenic | 40.0% | |
| AATAGATTCTCACTGGATGG+TGG | - | chr4_1:4864064-4864083 | None:intergenic | 40.0% | |
| TTAGATACATGTCTTTGGGC+GGG | + | chr4_1:4864215-4864234 | Msa0530770:intron | 40.0% | |
| TATCATGATTGGAGGAATGG+AGG | - | chr4_1:4864513-4864532 | None:intergenic | 40.0% | |
| ! | GTTGGTTCTTTGCAGATAGA+AGG | + | chr4_1:4864783-4864802 | Msa0530770:intron | 40.0% |
| ! | AGGGTACCTGAATAGTGAAA+TGG | + | chr4_1:4864932-4864951 | Msa0530770:intron | 40.0% |
| TTGAAAATCCTGTGAAACGC+AGG | + | chr4_1:4865003-4865022 | Msa0530770:intron | 40.0% | |
| TGAAAATCCTGTGAAACGCA+GGG | + | chr4_1:4865004-4865023 | Msa0530770:intron | 40.0% | |
| AATTTACACGGGTCAAGTCA+AGG | + | chr4_1:4865085-4865104 | Msa0530770:intron | 40.0% | |
| CTTGGAAACATACAGATCAG+AGG | + | chr4_1:4865296-4865315 | Msa0530770:intron | 40.0% | |
| TCAGAGGCTAATGAGTAAAC+TGG | + | chr4_1:4865312-4865331 | Msa0530770:intron | 40.0% | |
| GAGTAAACTGGCTAAAGACA+TGG | + | chr4_1:4865324-4865343 | Msa0530770:intron | 40.0% | |
| GTAGTTCTTACCTTACAAGC+CGG | + | chr4_1:4865602-4865621 | Msa0530770:intron | 40.0% | |
| CAACTCAATCCTTACGAATC+CGG | - | chr4_1:4865624-4865643 | None:intergenic | 40.0% | |
| AAAGCCTATCCAAGATCCAT+TGG | + | chr4_1:4865672-4865691 | Msa0530770:intron | 40.0% | |
| AAGCCTATCCAAGATCCATT+GGG | + | chr4_1:4865673-4865692 | Msa0530770:intron | 40.0% | |
| TATCCCAATGGATCTTGGAT+AGG | - | chr4_1:4865679-4865698 | None:intergenic | 40.0% | |
| TGTGTTGAGAAGTTCCACAT+TGG | + | chr4_1:4865857-4865876 | Msa0530770:intron | 40.0% | |
| CCTTACAAAATCAGCTCGTA+AGG | - | chr4_1:4865929-4865948 | None:intergenic | 40.0% | |
| !! | CCTTACGAGCTGATTTTGTA+AGG | + | chr4_1:4865926-4865945 | Msa0530770:intron | 40.0% |
| !! | CTTCTTTGGAATCCGATTCT+TGG | - | chr4_1:4866103-4866122 | None:intergenic | 40.0% |
| CAAGAATCGGATTCCAAAGA+AGG | + | chr4_1:4866101-4866120 | Msa0530770:intron | 40.0% | |
| ! | ATTGGTTTCACAACCAGTGT+TGG | - | chr4_1:4866173-4866192 | None:intergenic | 40.0% |
| ! | AGGATGATTTGTAATGGAGG+AGG | - | chr4_1:4866429-4866448 | None:intergenic | 40.0% |
| ! | GCTAGGATGATTTGTAATGG+AGG | - | chr4_1:4866432-4866451 | None:intergenic | 40.0% |
| CTGAGTTTCATTCTTAGGCT+AGG | - | chr4_1:4866449-4866468 | None:intergenic | 40.0% | |
| ACTAATTTGGGCTTGTCTAC+TGG | + | chr4_1:4866503-4866522 | Msa0530770:intron | 40.0% | |
| CGCTATAAGCTATACTTGAG+AGG | - | chr4_1:4866608-4866627 | None:intergenic | 40.0% | |
| CAATTCAGTGCCTAATCTCA+GGG | - | chr4_1:4866792-4866811 | None:intergenic | 40.0% | |
| ! | TATTGCAATGGCTTTTGGAC+TGG | + | chr4_1:4866878-4866897 | Msa0530770:intron | 40.0% |
| ! | ATTGCAATGGCTTTTGGACT+GGG | + | chr4_1:4866879-4866898 | Msa0530770:intron | 40.0% |
| ATTGTTGTCAGCACTCAACA+AGG | + | chr4_1:4867155-4867174 | Msa0530770:intron | 40.0% | |
| ACAACCTCTGTTGTCAATAG+CGG | - | chr4_1:4867666-4867685 | None:intergenic | 40.0% | |
| GTTGAAGTTATTGTGCCGAA+TGG | + | chr4_1:4867714-4867733 | Msa0530770:intron | 40.0% | |
| TTTCTTCAAACTTGTGTGCC+TGG | + | chr4_1:4867754-4867773 | Msa0530770:intron | 40.0% | |
| AGCTACTGCTGCATGTTTAA+TGG | - | chr4_1:4867875-4867894 | None:intergenic | 40.0% | |
| TAAACATGCAGCAGTAGCTT+TGG | + | chr4_1:4867876-4867895 | Msa0530770:intron | 40.0% | |
| AAACATGCAGCAGTAGCTTT+GGG | + | chr4_1:4867877-4867896 | Msa0530770:intron | 40.0% | |
| !! | CTTGTCATGCAGCTTTGTTA+AGG | + | chr4_1:4867948-4867967 | Msa0530770:three_prime_UTR | 40.0% |
| ! | GGGTCATCCGATCTTTTAAT+CGG | - | chr4_1:4868223-4868242 | None:intergenic | 40.0% |
| GAAGGTTAGGGTTTGTGGAA+TGG | - | chr4_1:4862148-4862167 | None:intergenic | 45.0% | |
| GTTAGAGGGAGTGAAGGTTA+GGG | - | chr4_1:4862160-4862179 | None:intergenic | 45.0% | |
| TGTTAGAGGGAGTGAAGGTT+AGG | - | chr4_1:4862161-4862180 | None:intergenic | 45.0% | |
| !! | GAGTTTGTTAGAGGGAGTGA+AGG | - | chr4_1:4862166-4862185 | None:intergenic | 45.0% |
| !!! | GGAGATGGTTTTGAAGGAGT+TGG | - | chr4_1:4862241-4862260 | None:intergenic | 45.0% |
| GAGACCGTGAAAAGATGATG+CGG | - | chr4_1:4862322-4862341 | None:intergenic | 45.0% | |
| CTCAGCAGGGATGATTTGAT+CGG | - | chr4_1:4862373-4862392 | None:intergenic | 45.0% | |
| CTAAGGTAAGATGCTCAGCA+GGG | - | chr4_1:4862386-4862405 | None:intergenic | 45.0% | |
| ACTAAGGTAAGATGCTCAGC+AGG | - | chr4_1:4862387-4862406 | None:intergenic | 45.0% | |
| ATCAGGATTGGAAGGGACTA+AGG | - | chr4_1:4862403-4862422 | None:intergenic | 45.0% | |
| CCAAGCTTCTGATACTCATC+AGG | - | chr4_1:4862420-4862439 | None:intergenic | 45.0% | |
| CCTGATGAGTATCAGAAGCT+TGG | + | chr4_1:4862417-4862436 | Msa0530770:CDS | 45.0% | |
| CGAATCAGGAAGTCCGATTA+AGG | - | chr4_1:4862451-4862470 | None:intergenic | 45.0% | |
| AATCGTACGCTGTACGAATC+AGG | - | chr4_1:4862465-4862484 | None:intergenic | 45.0% | |
| AGCGTACGATTCGTTGAATC+CGG | + | chr4_1:4862474-4862493 | Msa0530770:CDS | 45.0% | |
| ! | TTGTGGCGGAATCATATGCA+AGG | + | chr4_1:4863460-4863479 | Msa0530770:CDS | 45.0% |
| AACTGGTGAGGTGTATCCAT+TGG | + | chr4_1:4863506-4863525 | Msa0530770:CDS | 45.0% | |
| GAGTATCAGTTGAAGCCGAT+TGG | + | chr4_1:4863624-4863643 | Msa0530770:CDS | 45.0% | |
| GTATCAGTTGAAGCCGATTG+GGG | + | chr4_1:4863626-4863645 | Msa0530770:CDS | 45.0% | |
| GTGGGATCTTTGCTTATGCT+AGG | + | chr4_1:4863673-4863692 | Msa0530770:CDS | 45.0% | |
| GGCATGATTCCTACTAGATG+AGG | + | chr4_1:4863702-4863721 | Msa0530770:CDS | 45.0% | |
| ! | GAGATTAAGGGCATATGCTG+TGG | + | chr4_1:4864024-4864043 | Msa0530770:intron | 45.0% |
| ACTAGCGAAAGGATGAATGG+TGG | + | chr4_1:4864958-4864977 | Msa0530770:intron | 45.0% | |
| ! | AAACGCAGGGACTGTTTTCT+TGG | + | chr4_1:4865017-4865036 | Msa0530770:intron | 45.0% |
| ! | AACGCAGGGACTGTTTTCTT+GGG | + | chr4_1:4865018-4865037 | Msa0530770:intron | 45.0% |
| TATGAAGCCACAACCTATGC+GGG | - | chr4_1:4865049-4865068 | None:intergenic | 45.0% | |
| GTATGAAGCCACAACCTATG+CGG | - | chr4_1:4865050-4865069 | None:intergenic | 45.0% | |
| ACAACAGCTAGGTTTGCAGT+TGG | - | chr4_1:4865153-4865172 | None:intergenic | 45.0% | |
| ! | AGGTTCCGTTTAGTTGGCTT+AGG | + | chr4_1:4865395-4865414 | Msa0530770:intron | 45.0% |
| GAGGACCTAAGCCAACTAAA+CGG | - | chr4_1:4865403-4865422 | None:intergenic | 45.0% | |
| CGGATTCGTAAGGATTGAGT+TGG | + | chr4_1:4865622-4865641 | Msa0530770:intron | 45.0% | |
| ATCCATTGGGATACCCTCTA+TGG | + | chr4_1:4865686-4865705 | Msa0530770:intron | 45.0% | |
| !! | TTCCATAGAGGGTATCCCAA+TGG | - | chr4_1:4865691-4865710 | None:intergenic | 45.0% |
| AGATAGAGAGAAGTGAGTGC+AGG | + | chr4_1:4865778-4865797 | Msa0530770:intron | 45.0% | |
| GATAGAGAGAAGTGAGTGCA+GGG | + | chr4_1:4865779-4865798 | Msa0530770:intron | 45.0% | |
| ! | ACGCTCTAGATGTCTTGTCT+TGG | + | chr4_1:4865822-4865841 | Msa0530770:intron | 45.0% |
| ! | CGCTCTAGATGTCTTGTCTT+GGG | + | chr4_1:4865823-4865842 | Msa0530770:intron | 45.0% |
| GCTGTTAGGAACCCAAGAAT+CGG | + | chr4_1:4866088-4866107 | Msa0530770:intron | 45.0% | |
| CAGTAGCAGAGTTGTCAGTT+AGG | + | chr4_1:4866350-4866369 | Msa0530770:intron | 45.0% | |
| AGTGTCTCTTGAGAACTGCA+AGG | + | chr4_1:4866392-4866411 | Msa0530770:intron | 45.0% | |
| CTACTGGCATAAGCACTTCT+CGG | + | chr4_1:4866519-4866538 | Msa0530770:intron | 45.0% | |
| TTTGGCTACACCCTGAGATT+AGG | + | chr4_1:4866779-4866798 | Msa0530770:intron | 45.0% | |
| GCAATTCAGTGCCTAATCTC+AGG | - | chr4_1:4866793-4866812 | None:intergenic | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | + | chr4_1:4867187-4867206 | Msa0530770:intron | 45.0% | |
| AGGCAAAAGCGGAACAAAAG+CGG | - | chr4_1:4867568-4867587 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | - | chr4_1:4867656-4867675 | None:intergenic | 45.0% | |
| TAGACCGCTATTGACAACAG+AGG | + | chr4_1:4867659-4867678 | Msa0530770:intron | 45.0% | |
| CCAAGAACATGCATGCCATT+CGG | - | chr4_1:4867732-4867751 | None:intergenic | 45.0% | |
| TGAGTGGAATCCGTGAAAAC+AGG | - | chr4_1:4867922-4867941 | None:intergenic | 45.0% | |
| !! | GCATGCCTGGATTAGTTGAA+AGG | + | chr4_1:4868194-4868213 | Msa0530770:three_prime_UTR | 45.0% |
| GGTCACCTTTCAACTAATCC+AGG | - | chr4_1:4868202-4868221 | None:intergenic | 45.0% | |
| !!! | GTTATATTTTTTTTTTTTTT+TGG | + | chr4_1:4867822-4867841 | Msa0530770:intron | 5.0% |
| GGAGTGAAGGTTAGGGTTTG+TGG | - | chr4_1:4862153-4862172 | None:intergenic | 50.0% | |
| !!! | GGTGGTGGAGATGGTTTTGA+AGG | - | chr4_1:4862247-4862266 | None:intergenic | 50.0% |
| ! | TGTGATTTGTGGAGAGGTGG+TGG | - | chr4_1:4862262-4862281 | None:intergenic | 50.0% |
| ! | ACCGCCGCATCATCTTTTCA+CGG | + | chr4_1:4862315-4862334 | Msa0530770:CDS | 50.0% |
| ACCGTGAAAAGATGATGCGG+CGG | - | chr4_1:4862319-4862338 | None:intergenic | 50.0% | |
| ! | GGTGGTGCTAATTTCGGATG+CGG | + | chr4_1:4862528-4862547 | Msa0530770:CDS | 50.0% |
| ATCTTCTCGTGAACACGCTC+CGG | + | chr4_1:4862551-4862570 | Msa0530770:CDS | 50.0% | |
| ATCCATTGGAGTCAGAGACG+AGG | + | chr4_1:4863520-4863539 | Msa0530770:CDS | 50.0% | |
| AACCTCGTCTCTGACTCCAA+TGG | - | chr4_1:4863525-4863544 | None:intergenic | 50.0% | |
| !! | TTGTGTGAGGAGTGTCGTAC+CGG | + | chr4_1:4863543-4863562 | Msa0530770:CDS | 50.0% |
| CGGTTGAGCTTGAGGAGAAT+CGG | + | chr4_1:4863577-4863596 | Msa0530770:CDS | 50.0% | |
| TTGGGCGGGCATATGGTAAT+TGG | + | chr4_1:4864229-4864248 | Msa0530770:intron | 50.0% | |
| AAACAGTCCCTGCGTTTCAC+AGG | - | chr4_1:4865014-4865033 | None:intergenic | 50.0% | |
| ! | ACGCAGGGACTGTTTTCTTG+GGG | + | chr4_1:4865019-4865038 | Msa0530770:intron | 50.0% |
| AACTGGCTAAAGACATGGCC+TGG | + | chr4_1:4865329-4865348 | Msa0530770:intron | 50.0% | |
| ! | CCTTACGAATCCGGCTTGTA+AGG | - | chr4_1:4865615-4865634 | None:intergenic | 50.0% |
| CCTTACAAGCCGGATTCGTA+AGG | + | chr4_1:4865612-4865631 | Msa0530770:intron | 50.0% | |
| !! | GAGGGTATCCCAATGGATCT+TGG | - | chr4_1:4865684-4865703 | None:intergenic | 50.0% |
| GAAGTGAGTGCAGGGAATCT+CGG | + | chr4_1:4865787-4865806 | Msa0530770:intron | 50.0% | |
| AAGTGAGTGCAGGGAATCTC+GGG | + | chr4_1:4865788-4865807 | Msa0530770:intron | 50.0% | |
| GATGTCTTGTCTTGGGTGTG+AGG | + | chr4_1:4865830-4865849 | Msa0530770:intron | 50.0% | |
| ! | AAGCACTTCTCGGAGTGTCT+AGG | + | chr4_1:4866529-4866548 | Msa0530770:intron | 50.0% |
| GGCAAAAGCGGAACAAAAGC+GGG | - | chr4_1:4867567-4867586 | None:intergenic | 50.0% | |
| CCGAATGGCATGCATGTTCT+TGG | + | chr4_1:4867729-4867748 | Msa0530770:intron | 50.0% | |
| !! | GCATGACAAGAGCATCTGAG+TGG | - | chr4_1:4867938-4867957 | None:intergenic | 50.0% |
| ! | GGAACATAGAAGTGCATGCC+TGG | + | chr4_1:4868181-4868200 | Msa0530770:three_prime_UTR | 50.0% |
| !! | TTGTGGAGAGGTGGTGGAGA+TGG | - | chr4_1:4862256-4862275 | None:intergenic | 55.0% |
| ! | GCGTGTGATTTGTGGAGAGG+TGG | - | chr4_1:4862265-4862284 | None:intergenic | 55.0% |
| AAAAGATGATGCGGCGGTGG+TGG | - | chr4_1:4862313-4862332 | None:intergenic | 55.0% | |
| GTGAAAAGATGATGCGGCGG+TGG | - | chr4_1:4862316-4862335 | None:intergenic | 55.0% | |
| CACGGTCTCTGCTACGTTGT+TGG | + | chr4_1:4862333-4862352 | Msa0530770:CDS | 55.0% | |
| ATGTTAGGTGCTTCTGCCGC+TGG | + | chr4_1:4863319-4863338 | Msa0530770:intron | 55.0% | |
| !! | TTCTGGTGCTGCTGCTGTTG+TGG | + | chr4_1:4863443-4863462 | Msa0530770:CDS | 55.0% |
| TTCCGGAACTCAGTGGCAAC+TGG | + | chr4_1:4863489-4863508 | Msa0530770:CDS | 55.0% | |
| CACCAGTTGCCACTGAGTTC+CGG | - | chr4_1:4863494-4863513 | None:intergenic | 55.0% | |
| GAACTCAGTGGCAACTGGTG+AGG | + | chr4_1:4863494-4863513 | Msa0530770:CDS | 55.0% | |
| GTCAGAGACGAGGTTGTGTG+AGG | + | chr4_1:4863530-4863549 | Msa0530770:CDS | 55.0% | |
| TCGTACCGGAGATGTGGTGA+CGG | + | chr4_1:4863557-4863576 | Msa0530770:CDS | 55.0% | |
| CTCAACCGTCACCACATCTC+CGG | - | chr4_1:4863565-4863584 | None:intergenic | 55.0% | |
| !! | TGTGGTGACGGTTGAGCTTG+AGG | + | chr4_1:4863569-4863588 | Msa0530770:CDS | 55.0% |
| TTGAAGCCGATTGGGGATGC+TGG | + | chr4_1:4863633-4863652 | Msa0530770:CDS | 55.0% | |
| ACTGGACCAGCATCCCCAAT+CGG | - | chr4_1:4863642-4863661 | None:intergenic | 55.0% | |
| GGATGCTGGTCCAGTGATTG+AGG | + | chr4_1:4863647-4863666 | Msa0530770:CDS | 55.0% | |
| GTCCAGTGATTGAGGCTGGT+GGG | + | chr4_1:4863655-4863674 | Msa0530770:CDS | 55.0% | |
| ATCCCACCAGCCTCAATCAC+TGG | - | chr4_1:4863660-4863679 | None:intergenic | 55.0% | |
| CATGTCTTTGGGCGGGCATA+TGG | + | chr4_1:4864222-4864241 | Msa0530770:intron | 55.0% | |
| TTCTTGGGGAAGACCCGCAT+AGG | + | chr4_1:4865033-4865052 | Msa0530770:intron | 55.0% | |
| GCAGGGAATCTCGGGCTATT+CGG | + | chr4_1:4865796-4865815 | Msa0530770:intron | 55.0% | |
| GAGAGCAAGCTCTCCAACAC+TGG | + | chr4_1:4866157-4866176 | Msa0530770:intron | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | + | chr4_1:4867218-4867237 | Msa0530770:intron | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr4_1:4867227-4867246 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr4_1:4867228-4867247 | None:intergenic | 55.0% |
| GAACAAAAGCGGGTCAACGC+GGG | - | chr4_1:4867557-4867576 | None:intergenic | 55.0% | |
| GGAACAAAAGCGGGTCAACG+CGG | - | chr4_1:4867558-4867577 | None:intergenic | 55.0% | |
| AGTCGCGCGTTAGGCAAAAG+CGG | - | chr4_1:4867579-4867598 | None:intergenic | 55.0% | |
| ! | CTTTTGCCTAACGCGCGACT+CGG | + | chr4_1:4867579-4867598 | Msa0530770:intron | 55.0% |
| ! | GGCGCGTGTGATTTGTGGAG+AGG | - | chr4_1:4862268-4862287 | None:intergenic | 60.0% |
| GCTTGGGCGCGTGTGATTTG+TGG | - | chr4_1:4862273-4862292 | None:intergenic | 60.0% | |
| AACGGGAGAAGGTGGCGCTT+GGG | - | chr4_1:4862289-4862308 | None:intergenic | 60.0% | |
| TAACGGGAGAAGGTGGCGCT+TGG | - | chr4_1:4862290-4862309 | None:intergenic | 60.0% | |
| !! | GTGGTGGTAACGGGAGAAGG+TGG | - | chr4_1:4862297-4862316 | None:intergenic | 60.0% |
| ! | TGATGCGGCGGTGGTGGTAA+CGG | - | chr4_1:4862307-4862326 | None:intergenic | 60.0% |
| GAACACGCTCCGGTCGCATT+AGG | + | chr4_1:4862561-4862580 | Msa0530770:CDS | 60.0% | |
| !! | TGGTGCTGCTGCTGTTGTGG+CGG | + | chr4_1:4863446-4863465 | Msa0530770:CDS | 60.0% |
| !! | GGAGTGTCGTACCGGAGATG+TGG | + | chr4_1:4863551-4863570 | Msa0530770:CDS | 60.0% |
| GCTGGTCCAGTGATTGAGGC+TGG | + | chr4_1:4863651-4863670 | Msa0530770:CDS | 60.0% | |
| GGTCCAGTGATTGAGGCTGG+TGG | + | chr4_1:4863654-4863673 | Msa0530770:CDS | 60.0% | |
| GGGAAGACCCGCATAGGTTG+TGG | + | chr4_1:4865039-4865058 | Msa0530770:intron | 60.0% | |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr4_1:4867223-4867242 | None:intergenic | 60.0% |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr4_1:4867226-4867245 | None:intergenic | 60.0% |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr4_1:4867223-4867242 | Msa0530770:intron | 60.0% | |
| AATTGACGCGGCGCGGTAAG+CGG | + | chr4_1:4867230-4867249 | Msa0530770:intron | 60.0% | |
| ! | GCGGGCGCTTTTACATGACG+CGG | + | chr4_1:4867260-4867279 | Msa0530770:intron | 60.0% |
| GGTCAACGCGGGCAAAAAGC+GGG | - | chr4_1:4867546-4867565 | None:intergenic | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | - | chr4_1:4867547-4867566 | None:intergenic | 60.0% | |
| !! | GCGGTGGTGGTAACGGGAGA+AGG | - | chr4_1:4862300-4862319 | None:intergenic | 65.0% |
| ! | GATGCGGCGGTGGTGGTAAC+GGG | - | chr4_1:4862306-4862325 | None:intergenic | 65.0% |
| GTCAAAGCGGAAACGCGGCG+CGG | + | chr4_1:4867192-4867211 | Msa0530770:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | + | chr4_1:4867231-4867250 | Msa0530770:intron | 65.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | - | chr4_1:4867588-4867607 | None:intergenic | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | + | chr4_1:4867599-4867618 | Msa0530770:intron | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | - | chr4_1:4867645-4867664 | None:intergenic | 70.0% | |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | + | chr4_1:4867197-4867216 | Msa0530770:intron | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | + | chr4_1:4867241-4867260 | Msa0530770:intron | 80.0% |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | + | chr4_1:4867242-4867261 | Msa0530770:intron | 80.0% |
| ! | AACGCGGCGCGATCGCGGCG+CGG | - | chr4_1:4867640-4867659 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | - | chr4_1:4867635-4867654 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4862040 | 4868259 | 4862040 | ID=Msa0530770;Name=Msa0530770 |
| chr4_1 | mRNA | 4862040 | 4868259 | 4862040 | ID=Msa0530770-mRNA-1;Parent=Msa0530770;Name=Msa0530770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80|1|1|1|0.5|0.33|3|374|248 |
| chr4_1 | exon | 4862040 | 4862582 | 4862040 | ID=Msa0530770-mRNA-1:exon:1455;Parent=Msa0530770-mRNA-1 |
| chr4_1 | exon | 4863439 | 4863723 | 4863439 | ID=Msa0530770-mRNA-1:exon:1456;Parent=Msa0530770-mRNA-1 |
| chr4_1 | exon | 4867887 | 4868259 | 4867887 | ID=Msa0530770-mRNA-1:exon:1457;Parent=Msa0530770-mRNA-1 |
| chr4_1 | five_prime_UTR | 4862040 | 4862119 | 4862040 | ID=Msa0530770-mRNA-1:five_prime_utr;Parent=Msa0530770-mRNA-1 |
| chr4_1 | CDS | 4862120 | 4862582 | 4862120 | ID=Msa0530770-mRNA-1:cds;Parent=Msa0530770-mRNA-1 |
| chr4_1 | CDS | 4863439 | 4863722 | 4863439 | ID=Msa0530770-mRNA-1:cds;Parent=Msa0530770-mRNA-1 |
| chr4_1 | three_prime_UTR | 4863723 | 4863723 | 4863723 | ID=Msa0530770-mRNA-1:three_prime_utr;Parent=Msa0530770-mRNA-1 |
| chr4_1 | three_prime_UTR | 4867887 | 4868259 | 4867887 | ID=Msa0530770-mRNA-1:three_prime_utr;Parent=Msa0530770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
