Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845370 | XP_003613729.3 | 92.086 | 278 | 15 | 3 | 1 | 271 | 1 | 278 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845370 | sp|Q5E9D6|HDHD3_BOVIN | 35.149 | 202 | 118 | 4 | 62 | 251 | 10 | 210 | 1.47e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845370 | A0A396HS47 | 92.086 | 278 | 15 | 3 | 1 | 271 | 1 | 278 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085970 | Msa0845370 | 0.811470 | 6.889109e-51 | -8.615850e-47 |
| Msa0653030 | Msa0845370 | 0.808589 | 2.875415e-50 | -8.615850e-47 |
| Msa0670030 | Msa0845370 | 0.803330 | 3.671142e-49 | -8.615850e-47 |
| Msa0723210 | Msa0845370 | 0.814414 | 1.559575e-51 | -8.615850e-47 |
| Msa0725220 | Msa0845370 | 0.826981 | 2.012963e-54 | -8.615850e-47 |
| Msa0769390 | Msa0845370 | 0.803498 | 3.387538e-49 | -8.615850e-47 |
| Msa0802470 | Msa0845370 | -0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0806090 | Msa0845370 | 0.801828 | 7.489419e-49 | -8.615850e-47 |
| Msa0839330 | Msa0845370 | 0.801206 | 1.004640e-48 | -8.615850e-47 |
| Msa0181200 | Msa0845370 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0295640 | Msa0845370 | -0.811490 | 6.822809e-51 | -8.615850e-47 |
| Msa0492870 | Msa0845370 | 0.810474 | 1.132125e-50 | -8.615850e-47 |
| Msa0498220 | Msa0845370 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0510380 | Msa0845370 | 0.821747 | 3.426240e-53 | -8.615850e-47 |
| Msa0531970 | Msa0845370 | -0.824371 | 8.368694e-54 | -8.615850e-47 |
| Msa0548280 | Msa0845370 | -0.848686 | 5.231454e-60 | -8.615850e-47 |
| Msa0845370 | Msa0885280 | 0.828355 | 9.414371e-55 | -8.615850e-47 |
| Msa0845370 | Msa0925250 | 0.800331 | 1.515553e-48 | -8.615850e-47 |
| Msa0845370 | Msa0925290 | 0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0845370 | Msa0966090 | 0.804719 | 1.887703e-49 | -8.615850e-47 |
| Msa0845370 | Msa0990960 | 0.803501 | 3.382620e-49 | -8.615850e-47 |
| Msa0845370 | Msa1083410 | 0.807180 | 5.733800e-50 | -8.615850e-47 |
| Msa0845370 | Msa1095960 | 0.822081 | 2.866207e-53 | -8.615850e-47 |
| Msa0845370 | Msa1204490 | 0.800107 | 1.682994e-48 | -8.615850e-47 |
| Msa0845370 | Msa1252390 | 0.814317 | 1.638486e-51 | -8.615850e-47 |
| Msa0845370 | Msa1261250 | 0.878791 | 2.109093e-69 | -8.615850e-47 |
| Msa0845370 | Msa1314640 | 0.813542 | 2.427750e-51 | -8.615850e-47 |
| Msa0845370 | Msa1429150 | 0.815639 | 8.337635e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845370 | MtrunA17_Chr5g0416861 | 92.086 | 278 | 15 | 3 | 1 | 271 | 1 | 278 | 0.0 | 511 |
| Msa0845370 | MtrunA17_Chr7g0231601 | 91.273 | 275 | 20 | 1 | 1 | 271 | 1 | 275 | 0.0 | 510 |
| Msa0845370 | MtrunA17_Chr7g0256641 | 46.154 | 234 | 119 | 5 | 36 | 266 | 44 | 273 | 7.32e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845370 | AT1G14310.1 | 63.636 | 253 | 92 | 0 | 18 | 270 | 1 | 253 | 9.34e-119 | 340 |
| Msa0845370 | AT2G41250.1 | 45.714 | 210 | 112 | 2 | 59 | 266 | 77 | 286 | 8.39e-55 | 179 |
Find 86 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGAAAATCTTATCATTT+TGG | 0.171381 | 5_4:-24426000 | Msa0845370:three_prime_UTR |
| AGAGAGTAACGAACCGTATT+TGG | 0.222245 | 5_4:+24430911 | None:intergenic |
| TGGGAACAAGATTCGAATTT+CGG | 0.231455 | 5_4:+24431093 | None:intergenic |
| GGGAACAAGATTCGAATTTC+GGG | 0.236158 | 5_4:+24431094 | None:intergenic |
| AATATTATGCCTCTGGATTA+AGG | 0.258606 | 5_4:+24426341 | None:intergenic |
| GAAACTACAAATTTCCAAAA+TGG | 0.281844 | 5_4:+24427876 | None:intergenic |
| AAGATTCGAATTTCGGGAAA+TGG | 0.313513 | 5_4:+24431100 | None:intergenic |
| CCTTAAGCGAGAGTCGAAAT+TGG | 0.323043 | 5_4:+24427412 | None:intergenic |
| GAGGTTACTTATGCCACTAT+TGG | 0.325773 | 5_4:-24430936 | Msa0845370:CDS |
| GATCAAAAGGCAGATAAATT+CGG | 0.345700 | 5_4:-24426528 | Msa0845370:CDS |
| AGCTTTGAAGAAGGAGTTGC+TGG | 0.363368 | 5_4:+24431130 | None:intergenic |
| CTGTGTTGAAGAAGATGAAT+TGG | 0.364058 | 5_4:+24431073 | None:intergenic |
| AACCCCTGCTTTATCTCAGC+TGG | 0.379967 | 5_4:+24428783 | None:intergenic |
| ATAGTCATAGCGGTGGGATT+AGG | 0.385762 | 5_4:-24431022 | Msa0845370:CDS |
| AGGGTGATGGGAGGCCATTT+TGG | 0.390702 | 5_4:-24427890 | Msa0845370:CDS |
| ATCAAAAGGCAGATAAATTC+GGG | 0.399235 | 5_4:-24426527 | Msa0845370:CDS |
| CCAATTTCGACTCTCGCTTA+AGG | 0.402293 | 5_4:-24427412 | Msa0845370:CDS |
| GATATGTCAAAACAGGTTAT+GGG | 0.403961 | 5_4:-24426404 | Msa0845370:intron |
| GCCACTATTGGATCCAAATA+CGG | 0.421144 | 5_4:-24430924 | Msa0845370:intron |
| GCAATCTATCCCTACGTCAT+TGG | 0.433325 | 5_4:+24426503 | None:intergenic |
| GGTATCTTTCGTATTAATAG+TGG | 0.437580 | 5_4:-24431220 | None:intergenic |
| AAAGTCTTCGTCTCCGCTAC+CGG | 0.448942 | 5_4:+24427845 | None:intergenic |
| GTGGCATAAGTAACCTCAAC+AGG | 0.451147 | 5_4:+24430942 | None:intergenic |
| AGATTCGAATTTCGGGAAAT+GGG | 0.451468 | 5_4:+24431101 | None:intergenic |
| CAGGATTGGCCAATTGTAAG+AGG | 0.451515 | 5_4:+24430961 | None:intergenic |
| TGGAGTATTCGTGTATTACT+AGG | 0.461468 | 5_4:-24425980 | Msa0845370:three_prime_UTR |
| ATGACGTAGGGATAGATTGC+TGG | 0.463114 | 5_4:-24426500 | Msa0845370:intron |
| AAAATATTTCAAGCTGCTCT+AGG | 0.479897 | 5_4:-24427122 | Msa0845370:intron |
| TGGAGGCACCCTCTTACAAT+TGG | 0.488073 | 5_4:-24430970 | Msa0845370:CDS |
| TAACGAACGAGAATGACAAA+TGG | 0.493143 | 5_4:-24431186 | Msa0845370:exon |
| CATTGTGTCAAAAGCTCCGT+TGG | 0.494580 | 5_4:+24427581 | None:intergenic |
| TTGATCATCTCCTATGTGCA+AGG | 0.494581 | 5_4:+24426545 | None:intergenic |
| TTGTATCAGCACTATGCAAA+AGG | 0.495938 | 5_4:-24427621 | Msa0845370:intron |
| TTGTATTTACTACAGGGTGA+TGG | 0.498594 | 5_4:-24427903 | Msa0845370:intron |
| TCGCTTAAGGAAGCTATTGA+AGG | 0.502464 | 5_4:-24427399 | Msa0845370:CDS |
| AATAAGTAATATTATGCCTC+TGG | 0.504476 | 5_4:+24426334 | None:intergenic |
| AACGAACGAGAATGACAAAT+GGG | 0.505748 | 5_4:-24431185 | Msa0845370:exon |
| GTTTCTGAAGCCACCGGTAG+CGG | 0.506790 | 5_4:-24427858 | Msa0845370:CDS |
| GTCATAGCGGTGGGATTAGG+AGG | 0.507561 | 5_4:-24431019 | Msa0845370:CDS |
| ATGCCTCTGGATTAAGGATG+CGG | 0.508571 | 5_4:+24426347 | None:intergenic |
| ATGACTCTTCTCAAGGATGC+TGG | 0.508682 | 5_4:-24427561 | Msa0845370:CDS |
| TGTATTTACTACAGGGTGAT+GGG | 0.508825 | 5_4:-24427902 | Msa0845370:intron |
| GGTATATGACGCATTACTGT+TGG | 0.515328 | 5_4:-24430997 | Msa0845370:CDS |
| GGGTTTCAGAGCTTTGAAGA+AGG | 0.531266 | 5_4:+24431121 | None:intergenic |
| ATAAGTAACCTCAACAGGAT+TGG | 0.532624 | 5_4:+24430947 | None:intergenic |
| GACGCATTACTGTTGGATGC+TGG | 0.533706 | 5_4:-24430990 | Msa0845370:CDS |
| GATCAATTAAATGTAGAGGC+TGG | 0.533838 | 5_4:-24426573 | Msa0845370:CDS |
| GCAGATAACATAGACTCCTC+TGG | 0.535527 | 5_4:+24426235 | None:intergenic |
| GTCATTATATCATCAGAGGT+TGG | 0.537154 | 5_4:-24427164 | Msa0845370:CDS |
| TGACACAATGACTCTTCTCA+AGG | 0.537225 | 5_4:-24427568 | Msa0845370:CDS |
| GCACATAGGAGATGATCAAA+AGG | 0.538144 | 5_4:-24426541 | Msa0845370:CDS |
| TGTGTTGAAGAAGATGAATT+GGG | 0.540822 | 5_4:+24431074 | None:intergenic |
| GAATCCAGCTGAGATAAAGC+AGG | 0.541045 | 5_4:-24428787 | Msa0845370:CDS |
| ACCGTATTTGGATCCAATAG+TGG | 0.547054 | 5_4:+24430923 | None:intergenic |
| ACAATTGGCCAATCCTGTTG+AGG | 0.552038 | 5_4:-24430955 | Msa0845370:CDS |
| AAACAGTGACACAGTTAAGA+TGG | 0.552732 | 5_4:-24427444 | Msa0845370:intron |
| GTATCTTTCGTATTAATAGT+GGG | 0.558944 | 5_4:-24431219 | None:intergenic |
| TTTGTAGTTTCTGAAGCCAC+CGG | 0.569845 | 5_4:-24427864 | Msa0845370:CDS |
| ATATGTCAAAACAGGTTATG+GGG | 0.583954 | 5_4:-24426403 | Msa0845370:intron |
| ATTGTGTCAAAAGCTCCGTT+GGG | 0.586008 | 5_4:+24427582 | None:intergenic |
| TGTAGATCAATTAAATGTAG+AGG | 0.592869 | 5_4:-24426577 | Msa0845370:intron |
| TTCTCTCATAGTCATAGCGG+TGG | 0.593633 | 5_4:-24431029 | Msa0845370:CDS |
| TGCAGTCATTATATCATCAG+AGG | 0.598140 | 5_4:-24427168 | Msa0845370:CDS |
| AATTCGGGGCCAATGACGTA+GGG | 0.606381 | 5_4:-24426512 | Msa0845370:CDS |
| AATCCAGCTGAGATAAAGCA+GGG | 0.607959 | 5_4:-24428786 | Msa0845370:CDS |
| AGATCAACAAAGGAGCATCA+AGG | 0.617666 | 5_4:-24431052 | Msa0845370:CDS |
| ACTATGCAAAAGGTGATGCA+TGG | 0.630951 | 5_4:-24427611 | Msa0845370:CDS |
| GCTGGCAAAGCCTTGCACAT+AGG | 0.632234 | 5_4:-24426555 | Msa0845370:CDS |
| GCTTTGAAGAAGGAGTTGCT+GGG | 0.635887 | 5_4:+24431131 | None:intergenic |
| GTCTTCGTCTCCGCTACCGG+TGG | 0.637730 | 5_4:+24427848 | None:intergenic |
| AAATTCGGGGCCAATGACGT+AGG | 0.638294 | 5_4:-24426513 | Msa0845370:CDS |
| AGGATTGGCCAATTGTAAGA+GGG | 0.638915 | 5_4:+24430962 | None:intergenic |
| TCTCTCATAGTCATAGCGGT+GGG | 0.642709 | 5_4:-24431028 | Msa0845370:CDS |
| GATGCATGGCATCTTCCCAA+CGG | 0.645781 | 5_4:-24427597 | Msa0845370:CDS |
| TCTTCAACACAGATCAACAA+AGG | 0.651293 | 5_4:-24431062 | Msa0845370:CDS |
| TCACTTGTGAGTTGAATGTG+TGG | 0.656089 | 5_4:+24426163 | None:intergenic |
| ATTTACTACAGGGTGATGGG+AGG | 0.664583 | 5_4:-24427899 | Msa0845370:intron |
| AATCCGCATCCTTAATCCAG+AGG | 0.670851 | 5_4:-24426350 | Msa0845370:CDS |
| ACTCTTCTCAAGGATGCTGG+AGG | 0.671993 | 5_4:-24427558 | Msa0845370:intron |
| TATGTCAAAACAGGTTATGG+GGG | 0.672904 | 5_4:-24426402 | Msa0845370:intron |
| TCATAGCGGTGGGATTAGGA+GGG | 0.675405 | 5_4:-24431018 | Msa0845370:CDS |
| AAAATGAAAGCAATCACCAG+AGG | 0.705857 | 5_4:-24426251 | Msa0845370:three_prime_UTR |
| GCATTACTGTTGGATGCTGG+AGG | 0.719310 | 5_4:-24430987 | Msa0845370:CDS |
| AGGTTCTCTCATAGTCATAG+CGG | 0.727947 | 5_4:-24431032 | Msa0845370:CDS |
| TCAAAAGGCAGATAAATTCG+GGG | 0.739827 | 5_4:-24426526 | Msa0845370:CDS |
| ATCCAGCTGAGATAAAGCAG+GGG | 0.746828 | 5_4:-24428785 | Msa0845370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTTTAGTTATGT+TGG | + | chr5_4:24429527-24429546 | None:intergenic | 10.0% |
| !! | AAAAATTTGAAAAACCATAT+TGG | + | chr5_4:24426556-24426575 | None:intergenic | 15.0% |
| !! | AAAATAAGTTGTTGAAATTT+GGG | + | chr5_4:24426998-24427017 | None:intergenic | 15.0% |
| !! | AAAAATAAGTTGTTGAAATT+TGG | + | chr5_4:24426999-24427018 | None:intergenic | 15.0% |
| !! | AACTTATGAATTAACATAAA+AGG | + | chr5_4:24427056-24427075 | None:intergenic | 15.0% |
| !! | TAAAAATTAAAATGACCTAT+TGG | - | chr5_4:24429534-24429553 | Msa0845370:intron | 15.0% |
| !!! | GTTTTTAATGTTTCATTTTT+TGG | - | chr5_4:24429977-24429996 | Msa0845370:intron | 15.0% |
| !! | TGATTTAAAGAAGAAAAAAA+AGG | + | chr5_4:24430222-24430241 | None:intergenic | 15.0% |
| !! | ACATTCAATAAAACAAAAAA+TGG | - | chr5_4:24430468-24430487 | Msa0845370:intron | 15.0% |
| !!! | CTTTATTTTATCTTTTCTTG+TGG | - | chr5_4:24426359-24426378 | Msa0845370:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr5_4:24426413-24426432 | Msa0845370:intron | 20.0% |
| !! | TAAACTTATAGAGGATAATT+AGG | - | chr5_4:24426452-24426471 | Msa0845370:intron | 20.0% |
| !! | AAATAAGTTGTTGAAATTTG+GGG | + | chr5_4:24426997-24427016 | None:intergenic | 20.0% |
| !! | GAGAAAAAATTATATGCTAT+AGG | - | chr5_4:24427211-24427230 | Msa0845370:intron | 20.0% |
| !! | TATCTAACAAACTATACAAA+TGG | + | chr5_4:24428173-24428192 | None:intergenic | 20.0% |
| !!! | TATAGTTTGTTAGATAAAAC+CGG | - | chr5_4:24428177-24428196 | Msa0845370:intron | 20.0% |
| !!! | TAATGAGTATATTTGTTAAG+AGG | + | chr5_4:24428269-24428288 | None:intergenic | 20.0% |
| !! | CCAAAAAGAATAATAATAGA+AGG | + | chr5_4:24428336-24428355 | None:intergenic | 20.0% |
| !!! | CCTTCTATTATTATTCTTTT+TGG | - | chr5_4:24428333-24428352 | Msa0845370:intron | 20.0% |
| !! | AACAAAAATGGAATTGATAT+AGG | - | chr5_4:24428780-24428799 | Msa0845370:CDS | 20.0% |
| !! | ACAAAAATGGAATTGATATA+GGG | - | chr5_4:24428781-24428800 | Msa0845370:CDS | 20.0% |
| !!! | AAACTCAATTGAGAAATTTT+CGG | + | chr5_4:24428958-24428977 | None:intergenic | 20.0% |
| !! | AGAAAATATCTAATGTAACA+TGG | + | chr5_4:24429167-24429186 | None:intergenic | 20.0% |
| !! | AAAACAGATATCTGTTTAAT+TGG | - | chr5_4:24429222-24429241 | Msa0845370:intron | 20.0% |
| !! | ATATCTGTTTAATTGGTAAA+TGG | - | chr5_4:24429229-24429248 | Msa0845370:intron | 20.0% |
| !! | TACTAACTACATTTCATTAT+TGG | - | chr5_4:24429860-24429879 | Msa0845370:intron | 20.0% |
| !! | ACTAACTACATTTCATTATT+GGG | - | chr5_4:24429861-24429880 | Msa0845370:intron | 20.0% |
| !!! | AATATGTGAAACATTTGTTT+TGG | + | chr5_4:24430181-24430200 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTATATATGCTA+AGG | + | chr5_4:24430272-24430291 | None:intergenic | 20.0% |
| !!! | TATTTTTGACAAATCTGTTT+AGG | - | chr5_4:24431000-24431019 | Msa0845370:CDS | 20.0% |
| !!! | AATTAGAGATTTTGATGTAT+TGG | - | chr5_4:24431097-24431116 | Msa0845370:CDS | 20.0% |
| !!! | CTAAGAAAATCTTATCATTT+TGG | - | chr5_4:24431186-24431205 | Msa0845370:exon | 20.0% |
| ! | AACAACTTATAGTTTATACG+AGG | - | chr5_4:24426327-24426346 | Msa0845370:exon | 25.0% |
| !! | TTTTCATCAGATACTGAATT+GGG | + | chr5_4:24426585-24426604 | None:intergenic | 25.0% |
| !! | TTTTTCATCAGATACTGAAT+TGG | + | chr5_4:24426586-24426605 | None:intergenic | 25.0% |
| !! | TCTCGTAACATTTTTATACT+AGG | - | chr5_4:24426620-24426639 | Msa0845370:intron | 25.0% |
| !! | CTCGTAACATTTTTATACTA+GGG | - | chr5_4:24426621-24426640 | Msa0845370:intron | 25.0% |
| ! | AAAATATCAGGGACTAATTT+GGG | - | chr5_4:24426705-24426724 | Msa0845370:intron | 25.0% |
| ! | TAGAAAATTGTGAAAGATCA+AGG | - | chr5_4:24426752-24426771 | Msa0845370:intron | 25.0% |
| ! | CTTGATAAGAGTTTATAAAG+AGG | - | chr5_4:24426926-24426945 | Msa0845370:intron | 25.0% |
| ! | AATACATCATAGTTCATATG+TGG | - | chr5_4:24427951-24427970 | Msa0845370:intron | 25.0% |
| !!! | ACCAAGTTATTTTTTTGCAA+AGG | + | chr5_4:24428017-24428036 | None:intergenic | 25.0% |
| ! | TTTGCAAAAAAATAACTTGG+TGG | - | chr5_4:24428016-24428035 | Msa0845370:intron | 25.0% |
| ! | TTTCTATAAGGGAAAATATG+AGG | - | chr5_4:24428606-24428625 | Msa0845370:intron | 25.0% |
| !! | GGAAAATATGAGGAAAATTT+TGG | - | chr5_4:24428616-24428635 | Msa0845370:intron | 25.0% |
| !!! | AGGAAAATTTTGGTAGTTTA+TGG | - | chr5_4:24428626-24428645 | Msa0845370:intron | 25.0% |
| !!! | AATTTAGAAGAAAGAGCATT+AGG | - | chr5_4:24428755-24428774 | Msa0845370:CDS | 25.0% |
| ! | GATTTGAATTGGGTATATAT+AGG | + | chr5_4:24428861-24428880 | None:intergenic | 25.0% |
| ! | ACAACCAAGAAAATAAGTAT+TGG | + | chr5_4:24428986-24429005 | None:intergenic | 25.0% |
| ! | ATAGTTAAAATCCTTTGTAG+TGG | + | chr5_4:24429036-24429055 | None:intergenic | 25.0% |
| !!! | AGGATTTTAACTATCATGAT+AGG | - | chr5_4:24429042-24429061 | Msa0845370:intron | 25.0% |
| ! | GAATGTTAAGAACACAAATT+TGG | + | chr5_4:24429120-24429139 | None:intergenic | 25.0% |
| ! | GTTAGAAATTAACTGTAACT+AGG | + | chr5_4:24429199-24429218 | None:intergenic | 25.0% |
| ! | GAAACTACAAATTTCCAAAA+TGG | + | chr5_4:24429313-24429332 | None:intergenic | 25.0% |
| ! | CAAATAAAACAGAACTAGAA+AGG | + | chr5_4:24429389-24429408 | None:intergenic | 25.0% |
| !! | CTGATTGAATTTTCATAGAT+TGG | + | chr5_4:24429426-24429445 | None:intergenic | 25.0% |
| ! | GATACAATTTCATAACCAAT+AGG | + | chr5_4:24429552-24429571 | None:intergenic | 25.0% |
| ! | ATGTACAAAACTTACATCTA+AGG | + | chr5_4:24429693-24429712 | None:intergenic | 25.0% |
| ! | GTATTATCATATCGAAAGAA+TGG | + | chr5_4:24429843-24429862 | None:intergenic | 25.0% |
| !! | AAGGCATTATCAGAAATTAA+GGG | + | chr5_4:24430413-24430432 | None:intergenic | 25.0% |
| !! | TAAGGCATTATCAGAAATTA+AGG | + | chr5_4:24430414-24430433 | None:intergenic | 25.0% |
| ! | CTACATTTAATTGATCTACA+AGG | + | chr5_4:24430609-24430628 | None:intergenic | 25.0% |
| ! | TGTAGATCAATTAAATGTAG+AGG | - | chr5_4:24430609-24430628 | Msa0845370:intron | 25.0% |
| ! | CTAAATTGATATGTCAAAAC+AGG | - | chr5_4:24430775-24430794 | Msa0845370:intron | 25.0% |
| ! | AATAAGTAATATTATGCCTC+TGG | + | chr5_4:24430855-24430874 | None:intergenic | 25.0% |
| TGTGTTGAAGAAGATGAATT+GGG | + | chr5_4:24426115-24426134 | None:intergenic | 30.0% | |
| ATAAGCTATAATTGATCGAG+CGG | + | chr5_4:24426304-24426323 | None:intergenic | 30.0% | |
| TTGTTTATCCAAATAGGCAT+AGG | - | chr5_4:24426419-24426438 | Msa0845370:intron | 30.0% | |
| GATAGCTGATAAACTTATAG+AGG | - | chr5_4:24426443-24426462 | Msa0845370:intron | 30.0% | |
| ATAAGAGTGACTATCCAATA+TGG | - | chr5_4:24426539-24426558 | Msa0845370:CDS | 30.0% | |
| !! | TGGTTTTTCAAATTTTTGCG+TGG | - | chr5_4:24426559-24426578 | Msa0845370:CDS | 30.0% |
| ! | CTAATTCAGTAATTTGTCCT+CGG | - | chr5_4:24426678-24426697 | Msa0845370:intron | 30.0% |
| GAAAATATCAGGGACTAATT+TGG | - | chr5_4:24426704-24426723 | Msa0845370:intron | 30.0% | |
| GATAAGAGTTTATAAAGAGG+AGG | - | chr5_4:24426929-24426948 | Msa0845370:intron | 30.0% | |
| GTCATATACCTTCAATGATA+TGG | - | chr5_4:24427384-24427403 | Msa0845370:CDS | 30.0% | |
| ACTACATACCATATCATTGA+AGG | + | chr5_4:24427395-24427414 | None:intergenic | 30.0% | |
| TATGGTATGTAGTAGTGAAA+TGG | - | chr5_4:24427402-24427421 | Msa0845370:CDS | 30.0% | |
| ! | GTTGAATGATTTGGAAAGAA+AGG | - | chr5_4:24427494-24427513 | Msa0845370:intron | 30.0% |
| AAGAACAAAGAAATGAGTGT+TGG | - | chr5_4:24427529-24427548 | Msa0845370:intron | 30.0% | |
| !! | TTTTGACACCATTGGTTAAT+AGG | + | chr5_4:24427625-24427644 | None:intergenic | 30.0% |
| ATTTGCTTTCATTTGACAAG+AGG | - | chr5_4:24427707-24427726 | Msa0845370:intron | 30.0% | |
| ! | ACAAGAGGTGTATGAATATA+TGG | - | chr5_4:24427722-24427741 | Msa0845370:intron | 30.0% |
| TTGACCAAGTAATTTCTACT+CGG | - | chr5_4:24427789-24427808 | Msa0845370:intron | 30.0% | |
| !!! | ATACTGGTTTTGAAAATTCC+TGG | - | chr5_4:24427812-24427831 | Msa0845370:intron | 30.0% |
| GCCTTTGCAAAAAAATAACT+TGG | - | chr5_4:24428013-24428032 | Msa0845370:intron | 30.0% | |
| TGAAAACGTGTTTATAATCG+AGG | + | chr5_4:24428223-24428242 | None:intergenic | 30.0% | |
| AGGAAAATGCTGACAATAAA+GGG | + | chr5_4:24428316-24428335 | None:intergenic | 30.0% | |
| AAGGAAAATGCTGACAATAA+AGG | + | chr5_4:24428317-24428336 | None:intergenic | 30.0% | |
| ACACCATATTTATAAGTCCA+GGG | + | chr5_4:24428539-24428558 | None:intergenic | 30.0% | |
| TACACCATATTTATAAGTCC+AGG | + | chr5_4:24428540-24428559 | None:intergenic | 30.0% | |
| ATAGAAAACAGCAAGCTTAT+AGG | + | chr5_4:24428593-24428612 | None:intergenic | 30.0% | |
| !!! | TAAGCTTGCTGTTTTCTATA+AGG | - | chr5_4:24428594-24428613 | Msa0845370:intron | 30.0% |
| !!! | AAGCTTGCTGTTTTCTATAA+GGG | - | chr5_4:24428595-24428614 | Msa0845370:intron | 30.0% |
| TAAATTGTCATGGATGGTAT+AGG | + | chr5_4:24428741-24428760 | None:intergenic | 30.0% | |
| TTCTTCTAAATTGTCATGGA+TGG | + | chr5_4:24428747-24428766 | None:intergenic | 30.0% | |
| CTCTTTCTTCTAAATTGTCA+TGG | + | chr5_4:24428751-24428770 | None:intergenic | 30.0% | |
| GAGCATTAGGATAACAAAAA+TGG | - | chr5_4:24428768-24428787 | Msa0845370:CDS | 30.0% | |
| ! | GAGAAATTTTCGGAAATCTT+GGG | + | chr5_4:24428948-24428967 | None:intergenic | 30.0% |
| ! | TGAGAAATTTTCGGAAATCT+TGG | + | chr5_4:24428949-24428968 | None:intergenic | 30.0% |
| !! | GACTCCAATACTTATTTTCT+TGG | - | chr5_4:24428979-24428998 | Msa0845370:intron | 30.0% |
| ! | TTGTTGCTTCATTTGTCTTT+GGG | - | chr5_4:24429005-24429024 | Msa0845370:intron | 30.0% |
| TTAAGAACACAAATTTGGTC+AGG | + | chr5_4:24429115-24429134 | None:intergenic | 30.0% | |
| AATCAGTGACTTCAATATAC+TGG | + | chr5_4:24429142-24429161 | None:intergenic | 30.0% | |
| ! | TTGGTAAATGGCATTTGTTA+TGG | - | chr5_4:24429241-24429260 | Msa0845370:intron | 30.0% |
| CCTGTAGTAAATACAACAAA+GGG | + | chr5_4:24429279-24429298 | None:intergenic | 30.0% | |
| ! | CCTTTGTTGTATTTACTACA+GGG | - | chr5_4:24429277-24429296 | Msa0845370:intron | 30.0% |
| !!! | CTTTTTTGAGGAAGTTTATG+AGG | - | chr5_4:24429360-24429379 | Msa0845370:intron | 30.0% |
| TCTATGAAAATTCAATCAGC+TGG | - | chr5_4:24429427-24429446 | Msa0845370:intron | 30.0% | |
| ! | ACATCTAAGGTAAATAGCTT+AGG | + | chr5_4:24429680-24429699 | None:intergenic | 30.0% |
| TTATATTTGCATCATTGGTG+AGG | - | chr5_4:24429886-24429905 | Msa0845370:intron | 30.0% | |
| ! | GAGCAGCTTGAAATATTTTT+GGG | + | chr5_4:24430063-24430082 | None:intergenic | 30.0% |
| ! | AGAGCAGCTTGAAATATTTT+TGG | + | chr5_4:24430064-24430083 | None:intergenic | 30.0% |
| AAAATATTTCAAGCTGCTCT+AGG | - | chr5_4:24430064-24430083 | Msa0845370:intron | 30.0% | |
| AAAAAAAGGAATGCCAAGAA+AGG | + | chr5_4:24430208-24430227 | None:intergenic | 30.0% | |
| ! | TCTTCATATTTTCCTTACGT+TGG | - | chr5_4:24430338-24430357 | Msa0845370:intron | 30.0% |
| ! | ACTCTTTCAAGAGTTTCTTT+TGG | - | chr5_4:24430373-24430392 | Msa0845370:intron | 30.0% |
| AGGCATTATCAGAAATTAAG+GGG | + | chr5_4:24430412-24430431 | None:intergenic | 30.0% | |
| TGAGATAAGCATGGTTATTA+AGG | + | chr5_4:24430432-24430451 | None:intergenic | 30.0% | |
| GTTCTTGCAAACTTTAATTG+TGG | - | chr5_4:24430542-24430561 | Msa0845370:intron | 30.0% | |
| GATCAAAAGGCAGATAAATT+CGG | - | chr5_4:24430658-24430677 | Msa0845370:intron | 30.0% | |
| ATCAAAAGGCAGATAAATTC+GGG | - | chr5_4:24430659-24430678 | Msa0845370:intron | 30.0% | |
| TGATATGTCAAAACAGGTTA+TGG | - | chr5_4:24430781-24430800 | Msa0845370:intron | 30.0% | |
| GATATGTCAAAACAGGTTAT+GGG | - | chr5_4:24430782-24430801 | Msa0845370:intron | 30.0% | |
| ATATGTCAAAACAGGTTATG+GGG | - | chr5_4:24430783-24430802 | Msa0845370:intron | 30.0% | |
| AATATTATGCCTCTGGATTA+AGG | + | chr5_4:24430848-24430867 | None:intergenic | 30.0% | |
| ACAAAGAAGTCAGAATCAAA+TGG | - | chr5_4:24431059-24431078 | Msa0845370:CDS | 30.0% | |
| CAAAGAAGTCAGAATCAAAT+GGG | - | chr5_4:24431060-24431079 | Msa0845370:CDS | 30.0% | |
| AAAGAAGTCAGAATCAAATG+GGG | - | chr5_4:24431061-24431080 | Msa0845370:CDS | 30.0% | |
| TAACGAACGAGAATGACAAA+TGG | - | chr5_4:24426000-24426019 | Msa0845370:three_prime_UTR | 35.0% | |
| AACGAACGAGAATGACAAAT+GGG | - | chr5_4:24426001-24426020 | Msa0845370:three_prime_UTR | 35.0% | |
| AGATTCGAATTTCGGGAAAT+GGG | + | chr5_4:24426088-24426107 | None:intergenic | 35.0% | |
| AAGATTCGAATTTCGGGAAA+TGG | + | chr5_4:24426089-24426108 | None:intergenic | 35.0% | |
| TGGGAACAAGATTCGAATTT+CGG | + | chr5_4:24426096-24426115 | None:intergenic | 35.0% | |
| CTGTGTTGAAGAAGATGAAT+TGG | + | chr5_4:24426116-24426135 | None:intergenic | 35.0% | |
| TCTTCAACACAGATCAACAA+AGG | - | chr5_4:24426124-24426143 | Msa0845370:intron | 35.0% | |
| ATAAGTAACCTCAACAGGAT+TGG | + | chr5_4:24426242-24426261 | None:intergenic | 35.0% | |
| TAAGCTATAATTGATCGAGC+GGG | + | chr5_4:24426303-24426322 | None:intergenic | 35.0% | |
| TCCCTCTGATATAATGAGTT+AGG | - | chr5_4:24426653-24426672 | Msa0845370:intron | 35.0% | |
| CCCTAACTCATTATATCAGA+GGG | + | chr5_4:24426657-24426676 | None:intergenic | 35.0% | |
| CCCTCTGATATAATGAGTTA+GGG | - | chr5_4:24426654-24426673 | Msa0845370:intron | 35.0% | |
| TCCCTAACTCATTATATCAG+AGG | + | chr5_4:24426658-24426677 | None:intergenic | 35.0% | |
| TCCTCGGTATGAAAATATCA+GGG | - | chr5_4:24426694-24426713 | Msa0845370:intron | 35.0% | |
| !!! | TGGGTTTGTTTTTTGTCAGT+TGG | - | chr5_4:24426724-24426743 | Msa0845370:intron | 35.0% |
| CTAACTCATCCTTACAACAA+CGG | + | chr5_4:24426973-24426992 | None:intergenic | 35.0% | |
| CAAGAACAAGTCAATCCAAA+CGG | - | chr5_4:24427144-24427163 | Msa0845370:CDS | 35.0% | |
| AAGAACAAGTCAATCCAAAC+GGG | - | chr5_4:24427145-24427164 | Msa0845370:CDS | 35.0% | |
| ! | GCTTATAGCATTCTTTTCAC+TGG | + | chr5_4:24427285-24427304 | None:intergenic | 35.0% |
| TTTCCAAATCATTCAACTGC+AGG | + | chr5_4:24427491-24427510 | None:intergenic | 35.0% | |
| !! | AGAAATGAGTGTTGGAAAAC+TGG | - | chr5_4:24427537-24427556 | Msa0845370:intron | 35.0% |
| ! | TTAAGTTGCTGTGATGGAAA+TGG | - | chr5_4:24427569-24427588 | Msa0845370:CDS | 35.0% |
| ATGGAAATGGCTCAAAAGTA+AGG | - | chr5_4:24427582-24427601 | Msa0845370:CDS | 35.0% | |
| ATGGCTCAAAAGTAAGGTTA+AGG | - | chr5_4:24427588-24427607 | Msa0845370:CDS | 35.0% | |
| TGGCTCAAAAGTAAGGTTAA+GGG | - | chr5_4:24427589-24427608 | Msa0845370:CDS | 35.0% | |
| CAAAATCTGCTAGATTGACT+TGG | - | chr5_4:24427640-24427659 | Msa0845370:intron | 35.0% | |
| ! | TCATGTAAGGTTTTTCGCAT+AGG | - | chr5_4:24427665-24427684 | Msa0845370:intron | 35.0% |
| GTATCCGAGTAGAAATTACT+TGG | + | chr5_4:24427796-24427815 | None:intergenic | 35.0% | |
| AGTAATTTCTACTCGGATAC+TGG | - | chr5_4:24427796-24427815 | Msa0845370:intron | 35.0% | |
| TGCACTGTTATATCACATAC+AGG | - | chr5_4:24427835-24427854 | Msa0845370:CDS | 35.0% | |
| CTCCATTCTTATCTCGTATT+AGG | + | chr5_4:24428062-24428081 | None:intergenic | 35.0% | |
| GGAAAATGCTGACAATAAAG+GGG | + | chr5_4:24428315-24428334 | None:intergenic | 35.0% | |
| !! | ACGTGTTCATTTGTTATGTC+TGG | - | chr5_4:24428360-24428379 | Msa0845370:intron | 35.0% |
| !! | CATTTGTTATGTCTGGTTTC+AGG | - | chr5_4:24428367-24428386 | Msa0845370:intron | 35.0% |
| CTCAATGGTCTGAAAAACTA+CGG | - | chr5_4:24428443-24428462 | Msa0845370:intron | 35.0% | |
| AAAAAGTGACGAGGAAACAA+TGG | + | chr5_4:24428489-24428508 | None:intergenic | 35.0% | |
| ATTGTATTGAGTTATTGCCC+TGG | - | chr5_4:24428519-24428538 | Msa0845370:intron | 35.0% | |
| TTGCCCTGGACTTATAAATA+TGG | - | chr5_4:24428533-24428552 | Msa0845370:intron | 35.0% | |
| TTATGGTAAGTTGTAGCATG+AGG | - | chr5_4:24428643-24428662 | Msa0845370:intron | 35.0% | |
| TTGGGTATATATAGGAAGAG+AGG | + | chr5_4:24428853-24428872 | None:intergenic | 35.0% | |
| ACAGAGGAGTGATTTGAATT+GGG | + | chr5_4:24428871-24428890 | None:intergenic | 35.0% | |
| AATTCAGAGATGAAACACAG+AGG | + | chr5_4:24428887-24428906 | None:intergenic | 35.0% | |
| TCTGTGTTTCATCTCTGAAT+TGG | - | chr5_4:24428886-24428905 | Msa0845370:intron | 35.0% | |
| CTGTGTTTCATCTCTGAATT+GGG | - | chr5_4:24428887-24428906 | Msa0845370:intron | 35.0% | |
| ! | GTTGTTGCTTCATTTGTCTT+TGG | - | chr5_4:24429004-24429023 | Msa0845370:intron | 35.0% |
| ! | CCCTTTGTTGTATTTACTAC+AGG | - | chr5_4:24429276-24429295 | Msa0845370:intron | 35.0% |
| CCCTGTAGTAAATACAACAA+AGG | + | chr5_4:24429280-24429299 | None:intergenic | 35.0% | |
| TTGTATTTACTACAGGGTGA+TGG | - | chr5_4:24429283-24429302 | Msa0845370:intron | 35.0% | |
| TGTATTTACTACAGGGTGAT+GGG | - | chr5_4:24429284-24429303 | Msa0845370:intron | 35.0% | |
| TTGTATCAGCACTATGCAAA+AGG | - | chr5_4:24429565-24429584 | Msa0845370:intron | 35.0% | |
| AAACAGTGACACAGTTAAGA+TGG | - | chr5_4:24429742-24429761 | Msa0845370:intron | 35.0% | |
| GGGCATTATATTTGCATCAT+TGG | - | chr5_4:24429881-24429900 | Msa0845370:intron | 35.0% | |
| ! | AGACTTTTCTGCAAAGTAAG+CGG | + | chr5_4:24429937-24429956 | None:intergenic | 35.0% |
| TGCAGTCATTATATCATCAG+AGG | - | chr5_4:24430018-24430037 | Msa0845370:intron | 35.0% | |
| GTCATTATATCATCAGAGGT+TGG | - | chr5_4:24430022-24430041 | Msa0845370:intron | 35.0% | |
| !!! | GCTTGAAATATTTTTGGGTC+TGG | + | chr5_4:24430058-24430077 | None:intergenic | 35.0% |
| !! | ATATGCTTTGTTTCTTCCTC+AGG | - | chr5_4:24430141-24430160 | Msa0845370:intron | 35.0% |
| TCACATATTACCTCCTTTCT+TGG | - | chr5_4:24430192-24430211 | Msa0845370:intron | 35.0% | |
| TATATATGCTAAGGAATGCC+AGG | + | chr5_4:24430263-24430282 | None:intergenic | 35.0% | |
| GAGACTTAAATACCAACGTA+AGG | + | chr5_4:24430353-24430372 | None:intergenic | 35.0% | |
| AGACATGAATTAGCGGTTAT+TGG | - | chr5_4:24430494-24430513 | Msa0845370:intron | 35.0% | |
| GATCAATTAAATGTAGAGGC+TGG | - | chr5_4:24430613-24430632 | Msa0845370:intron | 35.0% | |
| TCAAAAGGCAGATAAATTCG+GGG | - | chr5_4:24430660-24430679 | Msa0845370:intron | 35.0% | |
| TATGTCAAAACAGGTTATGG+GGG | - | chr5_4:24430784-24430803 | Msa0845370:intron | 35.0% | |
| AAAATGAAAGCAATCACCAG+AGG | - | chr5_4:24430935-24430954 | Msa0845370:CDS | 35.0% | |
| AAGAAGTCAGAATCAAATGG+GGG | - | chr5_4:24431062-24431081 | Msa0845370:CDS | 35.0% | |
| ! | TGGAGTATTCGTGTATTACT+AGG | - | chr5_4:24431206-24431225 | Msa0845370:five_prime_UTR | 35.0% |
| GGGAACAAGATTCGAATTTC+GGG | + | chr5_4:24426095-24426114 | None:intergenic | 40.0% | |
| !! | AGATCAACAAAGGAGCATCA+AGG | - | chr5_4:24426134-24426153 | Msa0845370:intron | 40.0% |
| AGGTTCTCTCATAGTCATAG+CGG | - | chr5_4:24426154-24426173 | Msa0845370:intron | 40.0% | |
| GGTATATGACGCATTACTGT+TGG | - | chr5_4:24426189-24426208 | Msa0845370:three_prime_UTR | 40.0% | |
| !! | AGGATTGGCCAATTGTAAGA+GGG | + | chr5_4:24426227-24426246 | None:intergenic | 40.0% |
| GAGGTTACTTATGCCACTAT+TGG | - | chr5_4:24426250-24426269 | Msa0845370:three_prime_UTR | 40.0% | |
| GCCACTATTGGATCCAAATA+CGG | - | chr5_4:24426262-24426281 | Msa0845370:three_prime_UTR | 40.0% | |
| ACCGTATTTGGATCCAATAG+TGG | + | chr5_4:24426266-24426285 | None:intergenic | 40.0% | |
| AGAGAGTAACGAACCGTATT+TGG | + | chr5_4:24426278-24426297 | None:intergenic | 40.0% | |
| AAGCTATAATTGATCGAGCG+GGG | + | chr5_4:24426302-24426321 | None:intergenic | 40.0% | |
| AGCTATCACCTATGCCTATT+TGG | + | chr5_4:24426430-24426449 | None:intergenic | 40.0% | |
| GTCCTCGGTATGAAAATATC+AGG | - | chr5_4:24426693-24426712 | Msa0845370:intron | 40.0% | |
| ! | TCCCTGATATTTTCATACCG+AGG | + | chr5_4:24426698-24426717 | None:intergenic | 40.0% |
| CAACATAAGCCAATCCAAAC+GGG | + | chr5_4:24426779-24426798 | None:intergenic | 40.0% | |
| CCAACATAAGCCAATCCAAA+CGG | + | chr5_4:24426780-24426799 | None:intergenic | 40.0% | |
| CTTTACAAGCCGTTGTTGTA+AGG | - | chr5_4:24426961-24426980 | Msa0845370:intron | 40.0% | |
| CGTTGTTGTAAGGATGAGTT+AGG | - | chr5_4:24426971-24426990 | Msa0845370:intron | 40.0% | |
| ! | GAACATTTGGCTCAGTTTGA+TGG | - | chr5_4:24427461-24427480 | Msa0845370:intron | 40.0% |
| TTGCCTGCAGTTGAATGATT+TGG | - | chr5_4:24427485-24427504 | Msa0845370:intron | 40.0% | |
| ! | AGGAGATTAAGTTGCTGTGA+TGG | - | chr5_4:24427563-24427582 | Msa0845370:CDS | 40.0% |
| GTAAGGTTAAGGGATTCCTT+TGG | - | chr5_4:24427599-24427618 | Msa0845370:CDS | 40.0% | |
| TCCTTTGGCCTATTAACCAA+TGG | - | chr5_4:24427614-24427633 | Msa0845370:CDS | 40.0% | |
| ! | ACCATTGGTTAATAGGCCAA+AGG | + | chr5_4:24427618-24427637 | None:intergenic | 40.0% |
| !! | CTAGCAGATTTTGACACCAT+TGG | + | chr5_4:24427633-24427652 | None:intergenic | 40.0% |
| !! | GATTGACTTGGTCTCATGTA+AGG | - | chr5_4:24427652-24427671 | Msa0845370:intron | 40.0% |
| ATGTGATATAACAGTGCACC+AGG | + | chr5_4:24427833-24427852 | None:intergenic | 40.0% | |
| !! | TTTTGAGTGAATCAAGCACC+TGG | - | chr5_4:24427863-24427882 | Msa0845370:CDS | 40.0% |
| ! | TGACTTGTGGTGCATTAATG+TGG | - | chr5_4:24427926-24427945 | Msa0845370:intron | 40.0% |
| GACTTGTGGTGCATTAATGT+GGG | - | chr5_4:24427927-24427946 | Msa0845370:intron | 40.0% | |
| GGCCTAATACGAGATAAGAA+TGG | - | chr5_4:24428057-24428076 | Msa0845370:intron | 40.0% | |
| !! | TTAGATAAAACCGGCTTGCA+AGG | - | chr5_4:24428186-24428205 | Msa0845370:intron | 40.0% |
| AATCCAGCTGAGATAAAGCA+GGG | - | chr5_4:24428400-24428419 | Msa0845370:intron | 40.0% | |
| GTCTGAAAAACTACGGTATC+AGG | - | chr5_4:24428450-24428469 | Msa0845370:intron | 40.0% | |
| GTCATGGATGGTATAGGTTA+AGG | + | chr5_4:24428735-24428754 | None:intergenic | 40.0% | |
| AGAGAGGAGTGAAAAGAAGA+GGG | + | chr5_4:24428837-24428856 | None:intergenic | 40.0% | |
| AAGAGAGGAGTGAAAAGAAG+AGG | + | chr5_4:24428838-24428857 | None:intergenic | 40.0% | |
| CACAGAGGAGTGATTTGAAT+TGG | + | chr5_4:24428872-24428891 | None:intergenic | 40.0% | |
| GAAATCTTGGGAGTTAGGAA+AGG | + | chr5_4:24428936-24428955 | None:intergenic | 40.0% | |
| TTTCGGAAATCTTGGGAGTT+AGG | + | chr5_4:24428941-24428960 | None:intergenic | 40.0% | |
| !! | TTTGTAGTTTCTGAAGCCAC+CGG | - | chr5_4:24429322-24429341 | Msa0845370:intron | 40.0% |
| ACTATGCAAAAGGTGATGCA+TGG | - | chr5_4:24429575-24429594 | Msa0845370:intron | 40.0% | |
| ATTGTGTCAAAAGCTCCGTT+GGG | + | chr5_4:24429607-24429626 | None:intergenic | 40.0% | |
| TGACACAATGACTCTTCTCA+AGG | - | chr5_4:24429618-24429637 | Msa0845370:intron | 40.0% | |
| CACTGTTTGTCATGTTAGCA+AGG | + | chr5_4:24429730-24429749 | None:intergenic | 40.0% | |
| TCGCTTAAGGAAGCTATTGA+AGG | - | chr5_4:24429787-24429806 | Msa0845370:intron | 40.0% | |
| ! | CTTTGTTTCTTCCTCAGGAA+CGG | - | chr5_4:24430146-24430165 | Msa0845370:intron | 40.0% |
| AAAAGGAATGCCAAGAAAGG+AGG | + | chr5_4:24430205-24430224 | None:intergenic | 40.0% | |
| !!! | AAACGTGTCTTGTTTTCGTG+TGG | - | chr5_4:24430295-24430314 | Msa0845370:intron | 40.0% |
| ACAGCTTAGTGAGATAAGCA+TGG | + | chr5_4:24430441-24430460 | None:intergenic | 40.0% | |
| ATGGCTCAGACATGAATTAG+CGG | - | chr5_4:24430487-24430506 | Msa0845370:intron | 40.0% | |
| TTGATCATCTCCTATGTGCA+AGG | + | chr5_4:24430644-24430663 | None:intergenic | 40.0% | |
| GCACATAGGAGATGATCAAA+AGG | - | chr5_4:24430645-24430664 | Msa0845370:intron | 40.0% | |
| ! | TCACTTGTGAGTTGAATGTG+TGG | + | chr5_4:24431026-24431045 | None:intergenic | 40.0% |
| !! | GCTTTGAAGAAGGAGTTGCT+GGG | + | chr5_4:24426058-24426077 | None:intergenic | 45.0% |
| !! | AGCTTTGAAGAAGGAGTTGC+TGG | + | chr5_4:24426059-24426078 | None:intergenic | 45.0% |
| !! | GGGTTTCAGAGCTTTGAAGA+AGG | + | chr5_4:24426068-24426087 | None:intergenic | 45.0% |
| TTCTCTCATAGTCATAGCGG+TGG | - | chr5_4:24426157-24426176 | Msa0845370:intron | 45.0% | |
| TCTCTCATAGTCATAGCGGT+GGG | - | chr5_4:24426158-24426177 | Msa0845370:intron | 45.0% | |
| ATAGTCATAGCGGTGGGATT+AGG | - | chr5_4:24426164-24426183 | Msa0845370:intron | 45.0% | |
| !! | CAGGATTGGCCAATTGTAAG+AGG | + | chr5_4:24426228-24426247 | None:intergenic | 45.0% |
| ACAATTGGCCAATCCTGTTG+AGG | - | chr5_4:24426231-24426250 | Msa0845370:three_prime_UTR | 45.0% | |
| GTGGCATAAGTAACCTCAAC+AGG | + | chr5_4:24426247-24426266 | None:intergenic | 45.0% | |
| TGAAAGATCAAGGACCCGTT+TGG | - | chr5_4:24426762-24426781 | Msa0845370:intron | 45.0% | |
| !! | CCGTTTGGATTGGCTTATGT+TGG | - | chr5_4:24426777-24426796 | Msa0845370:intron | 45.0% |
| AAGCCGACACAAGGTAACTA+GGG | + | chr5_4:24426861-24426880 | None:intergenic | 45.0% | |
| TTCAAAGACAAGCCGACACA+AGG | + | chr5_4:24426870-24426889 | None:intergenic | 45.0% | |
| !! | TTGTGTCGGCTTGTCTTTGA+AGG | - | chr5_4:24426869-24426888 | Msa0845370:intron | 45.0% |
| !! | TGTGTCGGCTTGTCTTTGAA+GGG | - | chr5_4:24426870-24426889 | Msa0845370:intron | 45.0% |
| CAACAACGGCTTGTAAAGTG+AGG | + | chr5_4:24426959-24426978 | None:intergenic | 45.0% | |
| ATGTAGTAGTGAAATGGCCG+AGG | - | chr5_4:24427408-24427427 | Msa0845370:CDS | 45.0% | |
| TGTAGTAGTGAAATGGCCGA+GGG | - | chr5_4:24427409-24427428 | Msa0845370:CDS | 45.0% | |
| TGCAATGTAGAGACAACCCT+CGG | + | chr5_4:24427428-24427447 | None:intergenic | 45.0% | |
| GGTTGTCTCTACATTGCACA+GGG | - | chr5_4:24427430-24427449 | Msa0845370:CDS | 45.0% | |
| GTTGTCTCTACATTGCACAG+GGG | - | chr5_4:24427431-24427450 | Msa0845370:CDS | 45.0% | |
| !! | GAGTGTTGGAAAACTGGTTG+AGG | - | chr5_4:24427543-24427562 | Msa0845370:intron | 45.0% |
| AATCAAGCACCTGGAGTTTG+CGG | - | chr5_4:24427872-24427891 | Msa0845370:CDS | 45.0% | |
| GTTGCTTGTGTGATGACTTG+TGG | - | chr5_4:24427913-24427932 | Msa0845370:intron | 45.0% | |
| CATAGTTCATATGTGGCTGC+TGG | - | chr5_4:24427958-24427977 | Msa0845370:intron | 45.0% | |
| TGGTTTGACCTTGCCAAACA+GGG | - | chr5_4:24428036-24428055 | Msa0845370:intron | 45.0% | |
| ATCTCGTATTAGGCCCTGTT+TGG | + | chr5_4:24428052-24428071 | None:intergenic | 45.0% | |
| ATGCTGACAATAAAGGGGTG+TGG | + | chr5_4:24428310-24428329 | None:intergenic | 45.0% | |
| GAATCCAGCTGAGATAAAGC+AGG | - | chr5_4:24428399-24428418 | Msa0845370:intron | 45.0% | |
| ATCCAGCTGAGATAAAGCAG+GGG | - | chr5_4:24428401-24428420 | Msa0845370:intron | 45.0% | |
| !!! | AGAGAGCGTTTTCTGCTCAA+TGG | - | chr5_4:24428428-24428447 | Msa0845370:intron | 45.0% |
| ! | AGCTCTGACAAAAAGTGACG+AGG | + | chr5_4:24428498-24428517 | None:intergenic | 45.0% |
| GGTAAGTTGTAGCATGAGGA+AGG | - | chr5_4:24428647-24428666 | Msa0845370:intron | 45.0% | |
| AAAGAAGAGGGCAAGCATGA+TGG | + | chr5_4:24428825-24428844 | None:intergenic | 45.0% | |
| TTAGGAAAGGCTTGAGGCAA+AGG | + | chr5_4:24428923-24428942 | None:intergenic | 45.0% | |
| TTTGGGCTTCTCCACTACAA+AGG | - | chr5_4:24429022-24429041 | Msa0845370:intron | 45.0% | |
| !! | ATTTACTACAGGGTGATGGG+AGG | - | chr5_4:24429287-24429306 | Msa0845370:intron | 45.0% |
| !!! | CGGAGACGAAGACTTTTTTG+AGG | - | chr5_4:24429348-24429367 | Msa0845370:intron | 45.0% |
| CATTGTGTCAAAAGCTCCGT+TGG | + | chr5_4:24429608-24429627 | None:intergenic | 45.0% | |
| ATGACTCTTCTCAAGGATGC+TGG | - | chr5_4:24429625-24429644 | Msa0845370:intron | 45.0% | |
| CCTTAAGCGAGAGTCGAAAT+TGG | + | chr5_4:24429777-24429796 | None:intergenic | 45.0% | |
| CCAATTTCGACTCTCGCTTA+AGG | - | chr5_4:24429774-24429793 | Msa0845370:intron | 45.0% | |
| CTAAGGAATGCCAGGAAGAA+AGG | + | chr5_4:24430255-24430274 | None:intergenic | 45.0% | |
| GCAATCTATCCCTACGTCAT+TGG | + | chr5_4:24430686-24430705 | None:intergenic | 45.0% | |
| ATGACGTAGGGATAGATTGC+TGG | - | chr5_4:24430686-24430705 | Msa0845370:intron | 45.0% | |
| AATCCGCATCCTTAATCCAG+AGG | - | chr5_4:24430836-24430855 | Msa0845370:intron | 45.0% | |
| ATGCCTCTGGATTAAGGATG+CGG | + | chr5_4:24430842-24430861 | None:intergenic | 45.0% | |
| GCAGATAACATAGACTCCTC+TGG | + | chr5_4:24430954-24430973 | None:intergenic | 45.0% | |
| CAGAATCAAATGGGGGAACT+TGG | - | chr5_4:24431069-24431088 | Msa0845370:CDS | 45.0% | |
| TCATAGCGGTGGGATTAGGA+GGG | - | chr5_4:24426168-24426187 | Msa0845370:intron | 50.0% | |
| GACGCATTACTGTTGGATGC+TGG | - | chr5_4:24426196-24426215 | Msa0845370:three_prime_UTR | 50.0% | |
| GCATTACTGTTGGATGCTGG+AGG | - | chr5_4:24426199-24426218 | Msa0845370:three_prime_UTR | 50.0% | |
| !! | TGGAGGCACCCTCTTACAAT+TGG | - | chr5_4:24426216-24426235 | Msa0845370:three_prime_UTR | 50.0% |
| GATCAAGGACCCGTTTGGAT+TGG | - | chr5_4:24426767-24426786 | Msa0845370:intron | 50.0% | |
| GGGCAGATCGCAATTAAGGT+GGG | + | chr5_4:24426840-24426859 | None:intergenic | 50.0% | |
| CTAGGGGCAGATCGCAATTA+AGG | + | chr5_4:24426844-24426863 | None:intergenic | 50.0% | |
| TGCCCCTAGTTACCTTGTGT+CGG | - | chr5_4:24426855-24426874 | Msa0845370:intron | 50.0% | |
| AGCCGACACAAGGTAACTAG+GGG | + | chr5_4:24426860-24426879 | None:intergenic | 50.0% | |
| CAAGCCGACACAAGGTAACT+AGG | + | chr5_4:24426862-24426881 | None:intergenic | 50.0% | |
| !! | GTGTCGGCTTGTCTTTGAAG+GGG | - | chr5_4:24426871-24426890 | Msa0845370:intron | 50.0% |
| ! | TCGTCCCACATCGGTTAGAT+AGG | - | chr5_4:24426900-24426919 | Msa0845370:intron | 50.0% |
| GCGTCCTATCTAACCGATGT+GGG | + | chr5_4:24426907-24426926 | None:intergenic | 50.0% | |
| AGCGTCCTATCTAACCGATG+TGG | + | chr5_4:24426908-24426927 | None:intergenic | 50.0% | |
| GACACAATTTGCGACCCGTT+TGG | + | chr5_4:24427162-24427181 | None:intergenic | 50.0% | |
| !! | TCATGAGTGAAGCACCGAGA+GGG | - | chr5_4:24427305-24427324 | Msa0845370:intron | 50.0% |
| GGGTTGTCTCTACATTGCAC+AGG | - | chr5_4:24427429-24427448 | Msa0845370:CDS | 50.0% | |
| TACATTGCACAGGGGCTGTT+GGG | - | chr5_4:24427439-24427458 | Msa0845370:intron | 50.0% | |
| TCTTGCGAGATCTGATCTGC+TGG | - | chr5_4:24427749-24427768 | Msa0845370:intron | 50.0% | |
| ATCAAGCACCTGGAGTTTGC+GGG | - | chr5_4:24427873-24427892 | Msa0845370:CDS | 50.0% | |
| TTCATATGTGGCTGCTGGTG+TGG | - | chr5_4:24427963-24427982 | Msa0845370:intron | 50.0% | |
| GTGGTTTGACCTTGCCAAAC+AGG | - | chr5_4:24428035-24428054 | Msa0845370:intron | 50.0% | |
| GTATTAGGCCCTGTTTGGCA+AGG | + | chr5_4:24428047-24428066 | None:intergenic | 50.0% | |
| AACCCCTGCTTTATCTCAGC+TGG | + | chr5_4:24428406-24428425 | None:intergenic | 50.0% | |
| CAACTCCCAGTGTGTGAAGT+AGG | - | chr5_4:24428698-24428717 | Msa0845370:intron | 50.0% | |
| CTCCTCCTACTTCACACACT+GGG | + | chr5_4:24428706-24428725 | None:intergenic | 50.0% | |
| ACTCCTCCTACTTCACACAC+TGG | + | chr5_4:24428707-24428726 | None:intergenic | 50.0% | |
| TGGGAGTTAGGAAAGGCTTG+AGG | + | chr5_4:24428929-24428948 | None:intergenic | 50.0% | |
| AAAGTCTTCGTCTCCGCTAC+CGG | + | chr5_4:24429344-24429363 | None:intergenic | 50.0% | |
| GATGCATGGCATCTTCCCAA+CGG | - | chr5_4:24429589-24429608 | Msa0845370:intron | 50.0% | |
| ACTCTTCTCAAGGATGCTGG+AGG | - | chr5_4:24429628-24429647 | Msa0845370:intron | 50.0% | |
| TCACAGCTTGCCTTTCTTCC+TGG | - | chr5_4:24430242-24430261 | Msa0845370:intron | 50.0% | |
| AAATTCGGGGCCAATGACGT+AGG | - | chr5_4:24430673-24430692 | Msa0845370:intron | 50.0% | |
| AATTCGGGGCCAATGACGTA+GGG | - | chr5_4:24430674-24430693 | Msa0845370:intron | 50.0% | |
| GTCATAGCGGTGGGATTAGG+AGG | - | chr5_4:24426167-24426186 | Msa0845370:intron | 55.0% | |
| GGGGCAGATCGCAATTAAGG+TGG | + | chr5_4:24426841-24426860 | None:intergenic | 55.0% | |
| ! | TCGGCTTGTCTTTGAAGGGG+TGG | - | chr5_4:24426874-24426893 | Msa0845370:intron | 55.0% |
| ! | GGGTGGATTTCGTCCCACAT+CGG | - | chr5_4:24426891-24426910 | Msa0845370:intron | 55.0% |
| !! | CTCATGAGTGAAGCACCGAG+AGG | - | chr5_4:24427304-24427323 | Msa0845370:intron | 55.0% |
| !! | CATGAGTGAAGCACCGAGAG+GGG | - | chr5_4:24427306-24427325 | Msa0845370:intron | 55.0% |
| CTACATTGCACAGGGGCTGT+TGG | - | chr5_4:24427438-24427457 | Msa0845370:intron | 55.0% | |
| CAGGGGCTGTTGGGAACATT+TGG | - | chr5_4:24427448-24427467 | Msa0845370:intron | 55.0% | |
| GAAATGCACCCGCAAACTCC+AGG | + | chr5_4:24427884-24427903 | None:intergenic | 55.0% | |
| GAGTCTCTCACCTTGCAAGC+CGG | + | chr5_4:24428199-24428218 | None:intergenic | 55.0% | |
| CTCCCAGTGTGTGAAGTAGG+AGG | - | chr5_4:24428701-24428720 | Msa0845370:intron | 55.0% | |
| !!! | AGGGTGATGGGAGGCCATTT+TGG | - | chr5_4:24429296-24429315 | Msa0845370:intron | 55.0% |
| !! | GTTTCTGAAGCCACCGGTAG+CGG | - | chr5_4:24429328-24429347 | Msa0845370:intron | 55.0% |
| GGTTCAACACTCCGTTCCTG+AGG | + | chr5_4:24430160-24430179 | None:intergenic | 55.0% | |
| GCTGGCAAAGCCTTGCACAT+AGG | - | chr5_4:24430631-24430650 | Msa0845370:intron | 55.0% | |
| AAATCCTGCCCCGAGCGTGA+GGG | - | chr5_4:24426800-24426819 | Msa0845370:intron | 60.0% | |
| CAGCCACACAGTTCCCCTCT+CGG | + | chr5_4:24427322-24427341 | None:intergenic | 60.0% | |
| GAGAGGGGAACTGTGTGGCT+GGG | - | chr5_4:24427321-24427340 | Msa0845370:intron | 60.0% | |
| GAAATCCTGCCCCGAGCGTG+AGG | - | chr5_4:24426799-24426818 | Msa0845370:intron | 65.0% | |
| AATCCTGCCCCGAGCGTGAG+GGG | - | chr5_4:24426801-24426820 | Msa0845370:intron | 65.0% | |
| AACACACCCCCTCACGCTCG+GGG | + | chr5_4:24426811-24426830 | None:intergenic | 65.0% | |
| CAACACACCCCCTCACGCTC+GGG | + | chr5_4:24426812-24426831 | None:intergenic | 65.0% | |
| CCAACACACCCCCTCACGCT+CGG | + | chr5_4:24426813-24426832 | None:intergenic | 65.0% | |
| GCACCGAGAGGGGAACTGTG+TGG | - | chr5_4:24427316-24427335 | Msa0845370:intron | 65.0% | |
| CGAGAGGGGAACTGTGTGGC+TGG | - | chr5_4:24427320-24427339 | Msa0845370:intron | 65.0% | |
| GGGAACTGTGTGGCTGGGTG+TGG | - | chr5_4:24427326-24427345 | Msa0845370:intron | 65.0% | |
| GTCTTCGTCTCCGCTACCGG+TGG | + | chr5_4:24429341-24429360 | None:intergenic | 65.0% | |
| ATCCTGCCCCGAGCGTGAGG+GGG | - | chr5_4:24426802-24426821 | Msa0845370:intron | 70.0% | |
| ! | CCGAGCGTGAGGGGGTGTGT+TGG | - | chr5_4:24426810-24426829 | Msa0845370:intron | 70.0% |
| CTGTGTGGCTGGGTGTGGCG+TGG | - | chr5_4:24427331-24427350 | Msa0845370:intron | 70.0% | |
| TGTGGCTGGGTGTGGCGTGG+TGG | - | chr5_4:24427334-24427353 | Msa0845370:intron | 70.0% | |
| ! | CACCCCCTCACGCTCGGGGC+AGG | + | chr5_4:24426807-24426826 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 24425973 | 24431235 | 24425973 | ID=Msa0845370;Name=Msa0845370 |
| chr5_4 | mRNA | 24425973 | 24431235 | 24425973 | ID=Msa0845370-mRNA-1;Parent=Msa0845370;Name=Msa0845370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=46|1|1|1|0.87|0.77|9|329|271 |
| chr5_4 | exon | 24425973 | 24426130 | 24425973 | ID=Msa0845370-mRNA-1:exon:9836;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24426174 | 24426411 | 24426174 | ID=Msa0845370-mRNA-1:exon:9835;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24426501 | 24426594 | 24426501 | ID=Msa0845370-mRNA-1:exon:9834;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24427123 | 24427196 | 24427123 | ID=Msa0845370-mRNA-1:exon:9833;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24427380 | 24427452 | 24427380 | ID=Msa0845370-mRNA-1:exon:9832;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24427559 | 24427634 | 24427559 | ID=Msa0845370-mRNA-1:exon:9831;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24427827 | 24427910 | 24427827 | ID=Msa0845370-mRNA-1:exon:9830;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24428737 | 24428819 | 24428737 | ID=Msa0845370-mRNA-1:exon:9829;Parent=Msa0845370-mRNA-1 |
| chr5_4 | exon | 24430925 | 24431235 | 24430925 | ID=Msa0845370-mRNA-1:exon:9828;Parent=Msa0845370-mRNA-1 |
| chr5_4 | five_prime_UTR | 24431190 | 24431235 | 24431190 | ID=Msa0845370-mRNA-1:five_prime_utr;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24430925 | 24431189 | 24430925 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24428737 | 24428819 | 24428737 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24427827 | 24427910 | 24427827 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24427559 | 24427634 | 24427559 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24427380 | 24427452 | 24427380 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24427123 | 24427196 | 24427123 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24426501 | 24426594 | 24426501 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | CDS | 24426345 | 24426411 | 24426345 | ID=Msa0845370-mRNA-1:cds;Parent=Msa0845370-mRNA-1 |
| chr5_4 | three_prime_UTR | 24426174 | 24426344 | 24426174 | ID=Msa0845370-mRNA-1:three_prime_utr;Parent=Msa0845370-mRNA-1 |
| chr5_4 | three_prime_UTR | 24425973 | 24426130 | 24425973 | ID=Msa0845370-mRNA-1:three_prime_utr;Parent=Msa0845370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
