AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086670 MtrunA17_Chr1g0203061 98.430 446 7 0 1 446 1 446 0.0 915
Msa0086670 MtrunA17_Chr8g0348961 68.374 449 135 5 1 446 1 445 0.0 626
Msa0086670 MtrunA17_Chr3g0110381 58.465 443 176 4 1 438 1 440 0.0 539
Msa0086670 MtrunA17_Chr8g0344391 28.485 165 102 3 95 249 168 326 4.15e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086670 AT3G49050.1 71.822 472 107 4 1 446 1 472 0.0 696
Msa0086670 AT4G00500.1 63.920 449 156 4 1 445 1 447 0.0 580
Msa0086670 AT4G00500.2 63.920 449 156 4 1 445 1 447 0.0 580
Msa0086670 AT5G37710.1 57.718 447 172 5 1 445 1 432 0.0 518
Msa0086670 AT5G37710.2 65.903 349 114 3 1 347 1 346 2.91e-168 477
Msa0086670 AT2G42450.1 30.464 151 96 5 95 241 229 374 2.57e-13 72.4
Msa0086670 AT3G14075.3 28.485 165 102 3 95 249 169 327 2.85e-12 69.3
Msa0086670 AT3G14075.2 28.485 165 102 3 95 249 169 327 2.85e-12 69.3
Msa0086670 AT3G14075.1 28.485 165 102 3 95 249 169 327 2.85e-12 69.3
Msa0086670 AT4G16070.3 25.749 167 104 4 95 249 167 325 7.21e-12 68.2
Msa0086670 AT4G16070.1 25.749 167 104 4 95 249 167 325 7.81e-12 67.8

Find 166 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTGACTTTGAGTTTC+TGG -0.021305 1_2:-67413553 Msa0086670:five_prime_UTR
GTTCTGTTGGATAATAAATT+AGG 0.146068 1_2:-67412638 Msa0086670:CDS
CGTCAGATCATGCCATTATT+TGG 0.173210 1_2:-67411197 Msa0086670:CDS
CGCTGCATGATTTGCTTTAC+AGG 0.173921 1_2:+67410433 None:intergenic
GTAATGCAGCTTTGTATTCT+TGG 0.174372 1_2:+67410386 None:intergenic
AAAACGAGTTGTACGAAATT+TGG 0.190805 1_2:+67413630 None:intergenic
AATTTGATGGATATGAAAAT+TGG 0.214142 1_2:+67413501 None:intergenic
TTGTTGAGAGAAAGCCTTTC+AGG 0.219282 1_2:-67411517 Msa0086670:intron
TTTGATGAGAAGTACAAAAT+TGG 0.225971 1_2:+67413592 None:intergenic
AATTATACTCTTACATTTGC+TGG 0.240349 1_2:-67412506 Msa0086670:CDS
CTGATATAGTTCTTGCTATA+AGG 0.241938 1_2:-67412694 Msa0086670:CDS
TAGATGTATGTCGCTTAATT+TGG 0.247337 1_2:-67412369 Msa0086670:CDS
ACGATCTTCGGAACCCTCTT+TGG 0.259036 1_2:-67412829 Msa0086670:CDS
TTTACGCCACCGTCAGAATA+TGG 0.263935 1_2:-67410331 Msa0086670:CDS
GCAAATGTAAGAGTATAATT+TGG 0.291177 1_2:+67412509 None:intergenic
AACTTTGACTTTGAGTTTCT+GGG 0.295200 1_2:-67413552 Msa0086670:five_prime_UTR
TGTTCACAATGGGCTGTTAA+AGG 0.304854 1_2:-67412591 Msa0086670:CDS
CTTCTGTTAGTTCAACTAAT+AGG 0.307521 1_2:-67410261 Msa0086670:CDS
TTAGTATTGGATGAAAATTC+AGG 0.312016 1_2:+67413269 None:intergenic
AGTTTCTGGGTTTCCTTGTA+AGG 0.316505 1_2:-67413539 Msa0086670:five_prime_UTR
TGCTATAAGGGGACTAAATC+TGG 0.319987 1_2:-67412681 Msa0086670:CDS
TGTTATTCCCTCTTCTATCT+AGG 0.322507 1_2:+67410062 None:intergenic
TTTCTAAGTAATAACCAATC+AGG 0.324026 1_2:+67412779 None:intergenic
TCAAAAGATGAAACTTTGTT+TGG 0.325357 1_2:+67413689 None:intergenic
ATTGTTTAGCTTGCGCTCGT+TGG 0.340664 1_2:-67412970 Msa0086670:CDS
CATAAACTCTGTCGTGCTTC+AGG 0.343229 1_2:-67412327 Msa0086670:intron
CTCTTTCTCTATCCAAATAA+TGG 0.346939 1_2:+67411185 None:intergenic
AACCCTCTTTGGGCGCCTCC+TGG 0.352249 1_2:-67412818 Msa0086670:CDS
TGATCAAGATACAATATATA+TGG 0.354509 1_2:+67412725 None:intergenic
GGCACTGCTGTTCTCACAAC+TGG 0.356623 1_2:+67411264 None:intergenic
TGCCATGCTTATTGTGCTTA+AGG 0.358859 1_2:-67411622 Msa0086670:CDS
CGATCTTCGGAACCCTCTTT+GGG 0.364296 1_2:-67412828 Msa0086670:CDS
TTCTGTTGGATAATAAATTA+GGG 0.368729 1_2:-67412637 Msa0086670:CDS
ATATTGAGAGGAAGAGAGTT+AGG 0.369624 1_2:-67412412 Msa0086670:CDS
GAAATTTGCATTTCTAGTTT+CGG 0.376672 1_2:-67409791 None:intergenic
ACTTACATCCAAAGCCCTTT+GGG 0.382582 1_2:+67411161 None:intergenic
ATAATTAATACAAACTGAAC+AGG 0.382788 1_2:+67409893 None:intergenic
GACTTACATCCAAAGCCCTT+TGG 0.385089 1_2:+67411160 None:intergenic
TGATATAGTTCTTGCTATAA+GGG 0.394351 1_2:-67412693 Msa0086670:CDS
TTGTTTAGCTTGCGCTCGTT+GGG 0.398289 1_2:-67412969 Msa0086670:CDS
GAAAGAGGCCCAAAGGGCTT+TGG 0.400956 1_2:-67411169 Msa0086670:CDS
TTATTCATTGAATTATATAT+AGG 0.401248 1_2:+67409817 None:intergenic
ACATTTGCTGGACATTCCCT+TGG 0.407940 1_2:-67412494 Msa0086670:CDS
CAGGGCATGACAGTGAAACT+TGG 0.415218 1_2:-67412922 Msa0086670:CDS
GCTGGACATTCCCTTGGATC+AGG 0.417188 1_2:-67412488 Msa0086670:CDS
AGGAAGGAGAGGAGAGTTCA+AGG 0.427280 1_2:-67410297 Msa0086670:CDS
AAAGGCTGCTGGATGGGTTA+TGG 0.430445 1_2:-67412573 Msa0086670:CDS
CTGTGTATGAAGACGATCTT+CGG 0.437451 1_2:-67412841 Msa0086670:CDS
ACTTGAATATATCTTCCAAC+GGG 0.444494 1_2:+67411809 None:intergenic
TCTTAAGCTTCATATATGTA+AGG 0.445616 1_2:-67409984 Msa0086670:three_prime_UTR
TTTGTATTAATTATGTCGGT+TGG 0.451289 1_2:-67409884 Msa0086670:three_prime_UTR
CTGTAAGGAAATTTGCCATT+TGG 0.453308 1_2:-67413089 Msa0086670:five_prime_UTR
CTGACGTAGCATTGCAAGAA+AGG 0.454918 1_2:+67411214 None:intergenic
GTTGTACGAAATTTGGATGT+TGG 0.462693 1_2:+67413637 None:intergenic
TCCAACGGGGTGGCTGTCCT+TGG 0.464056 1_2:+67411823 None:intergenic
GGAGTACGGTTAACGAAAGC+TGG 0.464646 1_2:-67410240 Msa0086670:CDS
TAGCTTGCGCTCGTTGGGCG+TGG 0.470914 1_2:-67412964 Msa0086670:CDS
TGGGCGCCTCCTGGTGGCTA+TGG 0.472533 1_2:-67412809 Msa0086670:CDS
AAAGCAAATCATGCAGCGTC+AGG 0.480132 1_2:-67410428 Msa0086670:CDS
AATGGGCTGTTAAAGGCTGC+TGG 0.482503 1_2:-67412584 Msa0086670:CDS
CCAGGTGCATAGAGTCTCCT+TGG 0.485341 1_2:+67411554 None:intergenic
GAATAACATGAAGTGAAGAT+TGG 0.485527 1_2:-67410047 Msa0086670:three_prime_UTR
TCTGATGATGAGGGATCATA+AGG 0.489939 1_2:+67413730 None:intergenic
CACCAGGAGGCGCCCAAAGA+GGG 0.495968 1_2:+67412816 None:intergenic
CAAAATTGGAGAGTGGAGAA+AGG 0.497107 1_2:+67413606 None:intergenic
ATATCTATATCTGTACTGTA+AGG 0.497417 1_2:-67413104 Msa0086670:five_prime_UTR
CTGCCAATTGCAGTTGATGA+TGG 0.503555 1_2:-67410479 Msa0086670:intron
TGCTGGATGGGTTATGGATG+CGG 0.509716 1_2:-67412567 Msa0086670:CDS
GCTATGGAATCAACCCTGAT+TGG 0.521714 1_2:-67412793 Msa0086670:CDS
TCAGTTTGTATTAATTATGT+CGG 0.522075 1_2:-67409888 Msa0086670:three_prime_UTR
AAAAGATGTCTCCACACTGC+AGG 0.522926 1_2:-67412941 Msa0086670:CDS
CATTATTTGGATAGAGAAAG+AGG 0.525363 1_2:-67411184 Msa0086670:CDS
TGCATACTCAGTAGATGCCT+AGG 0.525653 1_2:-67413044 Msa0086670:five_prime_UTR
GTTTGGAACAACGTTGGAGG+AGG 0.525869 1_2:+67413706 None:intergenic
TGCTCAAACCTTCCATCCAC+TGG 0.526174 1_2:+67411243 None:intergenic
GCTGTTAAAGGCTGCTGGAT+GGG 0.527172 1_2:-67412579 Msa0086670:CDS
GATAGAGAAAGAGGCCCAAA+GGG 0.528361 1_2:-67411175 Msa0086670:CDS
TTAGGGAAGAGAAAGTTTGA+TGG 0.529142 1_2:-67412620 Msa0086670:CDS
AGGGCATGACAGTGAAACTT+GGG 0.536314 1_2:-67412921 Msa0086670:CDS
AGGCTCAAATTCTTCTGTTG+CGG 0.536990 1_2:+67412892 None:intergenic
GGCTGTTAAAGGCTGCTGGA+TGG 0.539589 1_2:-67412580 Msa0086670:CDS
TCAGGTAGGTATATAGCTGC+AGG 0.540163 1_2:+67413287 None:intergenic
CAGCAGTGCCAGTGGATGGA+AGG 0.543720 1_2:-67411251 Msa0086670:CDS
CCACCAGGAGGCGCCCAAAG+AGG 0.544467 1_2:+67412815 None:intergenic
AGAAGTACAAAATTGGAGAG+TGG 0.547645 1_2:+67413599 None:intergenic
CGTTTCTCTGCAGATTAGGA+AGG 0.547695 1_2:-67411293 Msa0086670:intron
TAGCGACAAAGACGTGGGAC+AGG 0.547885 1_2:+67412872 None:intergenic
AACTTTGTTTGGAACAACGT+TGG 0.548402 1_2:+67413700 None:intergenic
TTCACAGAAAATTACAAAGG+AGG 0.549834 1_2:+67413474 None:intergenic
TTGCTTTACAGGTACTTCCA+TGG 0.554356 1_2:+67410444 None:intergenic
TTTGTTTGGAACAACGTTGG+AGG 0.557666 1_2:+67413703 None:intergenic
CCTCTTTGGGCGCCTCCTGG+TGG 0.558537 1_2:-67412815 Msa0086670:CDS
TAGGGAAGAGAAAGTTTGAT+GGG 0.559444 1_2:-67412619 Msa0086670:CDS
CCAAGGAGACTCTATGCACC+TGG 0.561142 1_2:-67411554 Msa0086670:CDS
GAGTGATTATGCTGTTCTGT+TGG 0.561183 1_2:-67412651 Msa0086670:CDS
TTCTAAGTAATAACCAATCA+GGG 0.562621 1_2:+67412780 None:intergenic
CAGTTTACCTAGATAGAAGA+GGG 0.563112 1_2:-67410069 Msa0086670:three_prime_UTR
GTTCAAGTTGTCTCAAGTTG+AGG 0.563641 1_2:+67413138 None:intergenic
CTGCAGCTACTCCTGATCCA+AGG 0.564734 1_2:+67412477 None:intergenic
GGGAAGAGAAAGTTTGATGG+GGG 0.571897 1_2:-67412617 Msa0086670:CDS
TGGAGGAGGATCTGATGATG+AGG 0.576129 1_2:+67413720 None:intergenic
TTAAGCGACATACATCTAGC+AGG 0.579156 1_2:+67412374 None:intergenic
TAGTTCAACTAATAGGAGTA+CGG 0.579759 1_2:-67410254 Msa0086670:CDS
ACAGAGAGAGATGCCTTACA+AGG 0.581622 1_2:+67413526 None:intergenic
AGAGGAGAGTTCAAGGTCAG+AGG 0.582485 1_2:-67410290 Msa0086670:CDS
GACTTGAATATATCTTCCAA+CGG 0.583155 1_2:+67411808 None:intergenic
TGCAGCTACTCCTGATCCAA+GGG 0.585146 1_2:+67412478 None:intergenic
AGTAGCTGCAGCGTTGAGCA+TGG 0.585878 1_2:-67412465 Msa0086670:CDS
AGAAGATGCTAAAAGATCCA+AGG 0.590230 1_2:-67411571 Msa0086670:CDS
CAATATACACACTCAACAAG+AGG 0.590440 1_2:+67412989 None:intergenic
CACCTTAAGCACAATAAGCA+TGG 0.593008 1_2:+67411620 None:intergenic
GGATAGAGAAAGAGGCCCAA+AGG 0.594158 1_2:-67411176 Msa0086670:CDS
AGAACAGCAGTGCCAGTGGA+TGG 0.594858 1_2:-67411255 Msa0086670:CDS
AAAGATGTCTCCACACTGCA+GGG 0.595097 1_2:-67412940 Msa0086670:CDS
CGACATTGTGACTACAGCCT+AGG 0.599405 1_2:+67413027 None:intergenic
CAGGAAACAATGACAAGACA+CGG 0.602595 1_2:-67410409 Msa0086670:CDS
TCAAGATACAATATATATGG+TGG 0.604903 1_2:+67412728 None:intergenic
AAAATATAGCGACAAAGACG+TGG 0.605455 1_2:+67412866 None:intergenic
GTACATAGATACAAGAGGAC+GGG 0.607406 1_2:-67412753 Msa0086670:CDS
AATCCTTAGCCATACCTGAA+AGG 0.609175 1_2:+67411503 None:intergenic
ACCAAGGACAGCCACCCCGT+TGG 0.612019 1_2:-67411824 Msa0086670:CDS
GACGGTGGCGTAAAAGCATG+TGG 0.612406 1_2:+67410340 None:intergenic
GAGTACGGTTAACGAAAGCT+GGG 0.612808 1_2:-67410239 Msa0086670:CDS
AAGGGGACTAAATCTGGCAA+AGG 0.614888 1_2:-67412675 Msa0086670:CDS
GTGCAGAATCGAGATAGACT+TGG 0.616158 1_2:-67412437 Msa0086670:CDS
TCAAAAGTTCCATATTCTGA+CGG 0.618864 1_2:+67410322 None:intergenic
TCAGTTTACCTAGATAGAAG+AGG 0.619048 1_2:-67410070 Msa0086670:three_prime_UTR
CAAGAAAAGTATATTACTGA+GGG 0.621097 1_2:+67413423 None:intergenic
ACTGCTGTTCTCACAACTGG+AGG 0.621198 1_2:+67411267 None:intergenic
GATATAGTTCTTGCTATAAG+GGG 0.623233 1_2:-67412692 Msa0086670:CDS
GGGTTGATTCCATAGCCACC+AGG 0.625363 1_2:+67412800 None:intergenic
TATATGAAGCTTAAGAAGAG+AGG 0.625996 1_2:+67409991 None:intergenic
GTCACAATGTCGATTATCTG+CGG 0.627450 1_2:-67413016 Msa0086670:exon
GGAGGAGGATCTGATGATGA+GGG 0.628092 1_2:+67413721 None:intergenic
CACTGTCATGCCCTGCAGTG+TGG 0.628154 1_2:+67412930 None:intergenic
GATGGAGAAAGATAATACCA+TGG 0.629976 1_2:-67410461 Msa0086670:CDS
GTTAGGATGACTTCTTACCA+AGG 0.630330 1_2:-67411840 Msa0086670:intron
TATTGTGCTTAAGGTGCATG+AGG 0.631803 1_2:-67411613 Msa0086670:CDS
TATTGGATGAAAATTCAGGT+AGG 0.633308 1_2:+67413273 None:intergenic
AAGACGTACATAGATACAAG+AGG 0.638016 1_2:-67412758 Msa0086670:CDS
TCATATATGTAAGGATACGC+CGG 0.640499 1_2:-67409975 Msa0086670:three_prime_UTR
ATAGACTTGGAAATATTGAG+AGG 0.643093 1_2:-67412424 Msa0086670:CDS
AGGGAAGAGAAAGTTTGATG+GGG 0.643212 1_2:-67412618 Msa0086670:CDS
ACAAGAAAAGTATATTACTG+AGG 0.653355 1_2:+67413422 None:intergenic
ATTGTGCTTAAGGTGCATGA+GGG 0.654264 1_2:-67411612 Msa0086670:CDS
TGTGAGAACAGCAGTGCCAG+TGG 0.654373 1_2:-67411259 Msa0086670:CDS
ACAATGTGATACAAGCGACC+AGG 0.658544 1_2:+67411536 None:intergenic
GGAAGAGAAAGTTTGATGGG+GGG 0.658997 1_2:-67412616 Msa0086670:CDS
GAAACTCAAAGTCAAAGTTG+AGG 0.659614 1_2:+67413556 None:intergenic
GAATATATCTTCCAACGGGG+TGG 0.663765 1_2:+67411813 None:intergenic
CGTACATAGATACAAGAGGA+CGG 0.663943 1_2:-67412754 Msa0086670:CDS
CAAAACAAAGAACAAGGACA+AGG 0.665349 1_2:-67413768 None:intergenic
TAAGGATGAGCATGGTCACA+TGG 0.671907 1_2:-67410191 Msa0086670:CDS
TATGTCCAAAACAAAGAACA+AGG 0.682126 1_2:-67413774 None:intergenic
ATACTATAGTTGTTATCACA+AGG 0.682151 1_2:-67413384 Msa0086670:five_prime_UTR
AAAGTTCCATATTCTGACGG+TGG 0.682425 1_2:+67410325 None:intergenic
TAATTAATACAAACTGAACA+GGG 0.684820 1_2:+67409894 None:intergenic
AAATATAGCGACAAAGACGT+GGG 0.685383 1_2:+67412867 None:intergenic
AAATTCACAGAAAATTACAA+AGG 0.687127 1_2:+67413471 None:intergenic
GAGGGATACATGTATACCAG+AGG 0.695751 1_2:-67411594 Msa0086670:CDS
GGGCATGACAGTGAAACTTG+GGG 0.699008 1_2:-67412920 Msa0086670:CDS
AGTAGTACCCAGAAAACCAG+AGG 0.699698 1_2:+67413664 None:intergenic
AGCTGCAGCGTTGAGCATGG+TGG 0.702176 1_2:-67412462 Msa0086670:CDS
AAGAAGTGTTATGATCTGTG+CGG 0.730602 1_2:+67413331 None:intergenic
TTGATTCCATAGCCACCAGG+AGG 0.734365 1_2:+67412803 None:intergenic
CTTGAATATATCTTCCAACG+GGG 0.749285 1_2:+67411810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCATTGAATTATATAT+AGG + chr1_2:67413740-67413759 None:intergenic 10.0%
!!! ATTTTTTTCTTCTCTATTTT+TGG - chr1_2:67410307-67410326 Msa0086670:CDS 15.0%
!!! TTTTTTTCTTCTCTATTTTT+GGG - chr1_2:67410308-67410327 Msa0086670:CDS 15.0%
!!! TTTCTTATTGTAGAAATTTT+TGG - chr1_2:67413534-67413553 Msa0086670:five_prime_UTR 15.0%
!!! TTCTTATTGTAGAAATTTTT+GGG - chr1_2:67413535-67413554 Msa0086670:five_prime_UTR 15.0%
!!! AATTTGATGGATATGAAAAT+TGG + chr1_2:67410056-67410075 None:intergenic 20.0%
!! AAATTCACAGAAAATTACAA+AGG + chr1_2:67410086-67410105 None:intergenic 20.0%
!! GAGAAGAAAAAAATTAGTAT+TGG + chr1_2:67410301-67410320 None:intergenic 20.0%
!!! TTTTTTCTTCTCTATTTTTG+GGG - chr1_2:67410309-67410328 Msa0086670:CDS 20.0%
!! TGATCAAGATACAATATATA+TGG + chr1_2:67410832-67410851 None:intergenic 20.0%
!! TTCTGTTGGATAATAAATTA+GGG - chr1_2:67410917-67410936 Msa0086670:intron 20.0%
!! CTAGATGTAAAAATATTCAA+AGG + chr1_2:67411297-67411316 None:intergenic 20.0%
!! TATCACATAAAATAAACTTC+AGG + chr1_2:67411444-67411463 None:intergenic 20.0%
!! TTTATTATGAGAGATAGTAA+AGG - chr1_2:67411498-67411517 Msa0086670:intron 20.0%
!! AATGAAGTACAAAAATTACA+AGG + chr1_2:67412426-67412445 None:intergenic 20.0%
!!! AATTTTTGTACTTCATTCTT+TGG - chr1_2:67412429-67412448 Msa0086670:CDS 20.0%
!! TGTCAACTTTAATTAAGAAT+TGG - chr1_2:67412495-67412514 Msa0086670:CDS 20.0%
!! TCTAAGAATTTCAAATCTTA+AGG + chr1_2:67412521-67412540 None:intergenic 20.0%
!!! TATGTTTTCGTAAAATATCA+TGG + chr1_2:67412858-67412877 None:intergenic 20.0%
!! TAATTAATACAAACTGAACA+GGG + chr1_2:67413663-67413682 None:intergenic 20.0%
!! ATAATTAATACAAACTGAAC+AGG + chr1_2:67413664-67413683 None:intergenic 20.0%
!! TCAGTTTGTATTAATTATGT+CGG - chr1_2:67413666-67413685 Msa0086670:five_prime_UTR 20.0%
! TCAAAAGATGAAACTTTGTT+TGG + chr1_2:67409868-67409887 None:intergenic 25.0%
!! TTTGATGAGAAGTACAAAAT+TGG + chr1_2:67409965-67409984 None:intergenic 25.0%
!! CAAGAAAAGTATATTACTGA+GGG + chr1_2:67410134-67410153 None:intergenic 25.0%
!! ACAAGAAAAGTATATTACTG+AGG + chr1_2:67410135-67410154 None:intergenic 25.0%
!! TATACTTTTCTTGTATTGAG+TGG - chr1_2:67410141-67410160 Msa0086670:three_prime_UTR 25.0%
! ATACTATAGTTGTTATCACA+AGG - chr1_2:67410170-67410189 Msa0086670:exon 25.0%
!! TTAGTATTGGATGAAAATTC+AGG + chr1_2:67410288-67410307 None:intergenic 25.0%
! ATATCTATATCTGTACTGTA+AGG - chr1_2:67410450-67410469 Msa0086670:CDS 25.0%
! AGTATGCAAAAAAACAGTAT+TGG + chr1_2:67410498-67410517 None:intergenic 25.0%
! TTCTAAGTAATAACCAATCA+GGG + chr1_2:67410777-67410796 None:intergenic 25.0%
! TTTCTAAGTAATAACCAATC+AGG + chr1_2:67410778-67410797 None:intergenic 25.0%
! TCAAGATACAATATATATGG+TGG + chr1_2:67410829-67410848 None:intergenic 25.0%
!! TGATATAGTTCTTGCTATAA+GGG - chr1_2:67410861-67410880 Msa0086670:intron 25.0%
! GTTCTGTTGGATAATAAATT+AGG - chr1_2:67410916-67410935 Msa0086670:intron 25.0%
!! GCAAATGTAAGAGTATAATT+TGG + chr1_2:67411048-67411067 None:intergenic 25.0%
! AATTATACTCTTACATTTGC+TGG - chr1_2:67411048-67411067 Msa0086670:intron 25.0%
! TTAGTTAATTTCAACTGTTG+AGG - chr1_2:67411588-67411607 Msa0086670:CDS 25.0%
!! ATATATTCAAGTCTCTTTTC+TGG - chr1_2:67411756-67411775 Msa0086670:intron 25.0%
! AACAAACAGAATAATAACGA+AGG + chr1_2:67411795-67411814 None:intergenic 25.0%
!! ATGAGAAGATATTGTTTTCT+TGG - chr1_2:67411899-67411918 Msa0086670:intron 25.0%
! GAAGAAACAAGATAAACATA+TGG + chr1_2:67412160-67412179 None:intergenic 25.0%
!! TAATTTGTATGCATACTTGA+AGG + chr1_2:67412682-67412701 None:intergenic 25.0%
! GTATGCATACAAATTATCAT+AGG - chr1_2:67412686-67412705 Msa0086670:CDS 25.0%
! ATAAGCTCCAATAAGTAATA+AGG + chr1_2:67412743-67412762 None:intergenic 25.0%
! TGAAGCTGAAAACAATTTAT+GGG + chr1_2:67412827-67412846 None:intergenic 25.0%
! ATGAAGCTGAAAACAATTTA+TGG + chr1_2:67412828-67412847 None:intergenic 25.0%
! TAAATAGAATGCCAAATTAG+TGG + chr1_2:67413018-67413037 None:intergenic 25.0%
!!! GAATGAATGAATTTTAGTTC+AGG + chr1_2:67413446-67413465 None:intergenic 25.0%
!! ATTCATTCTTTTGCGATTTT+TGG - chr1_2:67413458-67413477 Msa0086670:five_prime_UTR 25.0%
! TCTTAAGCTTCATATATGTA+AGG - chr1_2:67413570-67413589 Msa0086670:five_prime_UTR 25.0%
! TTCACACAAAACAAAAATTC+CGG + chr1_2:67413601-67413620 None:intergenic 25.0%
! TTTGTATTAATTATGTCGGT+TGG - chr1_2:67413670-67413689 Msa0086670:five_prime_UTR 25.0%
AAAACGAGTTGTACGAAATT+TGG + chr1_2:67409927-67409946 None:intergenic 30.0%
! AACTTTGACTTTGAGTTTCT+GGG - chr1_2:67410002-67410021 Msa0086670:three_prime_UTR 30.0%
!!! CAAAGGAGGTTTTAATTTGA+TGG + chr1_2:67410069-67410088 None:intergenic 30.0%
TTCACAGAAAATTACAAAGG+AGG + chr1_2:67410083-67410102 None:intergenic 30.0%
TATTGGATGAAAATTCAGGT+AGG + chr1_2:67410284-67410303 None:intergenic 30.0%
! CTGATATAGTTCTTGCTATA+AGG - chr1_2:67410860-67410879 Msa0086670:intron 30.0%
! GATATAGTTCTTGCTATAAG+GGG - chr1_2:67410862-67410881 Msa0086670:intron 30.0%
ATAGACTTGGAAATATTGAG+AGG - chr1_2:67411130-67411149 Msa0086670:intron 30.0%
! TAGATGTATGTCGCTTAATT+TGG - chr1_2:67411185-67411204 Msa0086670:CDS 30.0%
AAATATTCAAAGGAACGACA+AGG + chr1_2:67411287-67411306 None:intergenic 30.0%
! TGTTAAATTAGAGCTTTTGC+TGG - chr1_2:67411331-67411350 Msa0086670:intron 30.0%
! CAATCGAACATTTTTCCATT+AGG + chr1_2:67411471-67411490 None:intergenic 30.0%
GTCAGCTTGAATAAGTATAA+GGG + chr1_2:67411645-67411664 None:intergenic 30.0%
!! AAGTTAATCGCTATTTTCCT+TGG - chr1_2:67411692-67411711 Msa0086670:intron 30.0%
ACTTGAATATATCTTCCAAC+GGG + chr1_2:67411748-67411767 None:intergenic 30.0%
GACTTGAATATATCTTCCAA+CGG + chr1_2:67411749-67411768 None:intergenic 30.0%
ATACACTATGTTTGAACTGA+GGG + chr1_2:67412122-67412141 None:intergenic 30.0%
CTCTTTCTCTATCCAAATAA+TGG + chr1_2:67412372-67412391 None:intergenic 30.0%
CATTATTTGGATAGAGAAAG+AGG - chr1_2:67412370-67412389 Msa0086670:CDS 30.0%
! TTTTGTACTTCATTCTTTGG+TGG - chr1_2:67412432-67412451 Msa0086670:CDS 30.0%
GTTATAACAATTTCTGTGTC+TGG - chr1_2:67412599-67412618 Msa0086670:CDS 30.0%
AGTAATAAGGCAATCCAAAT+AGG + chr1_2:67412730-67412749 None:intergenic 30.0%
! TGGATTGCCTTATTACTTAT+TGG - chr1_2:67412733-67412752 Msa0086670:CDS 30.0%
TATCAATTTGAGCTTCTTGT+AGG - chr1_2:67412972-67412991 Msa0086670:CDS 30.0%
TGGAACTTGATTGATTACTT+AGG + chr1_2:67412998-67413017 None:intergenic 30.0%
TCAATCAAGTTCCACTAATT+TGG - chr1_2:67413004-67413023 Msa0086670:CDS 30.0%
TCAAAAGTTCCATATTCTGA+CGG + chr1_2:67413235-67413254 None:intergenic 30.0%
! AGAATATGGAACTTTTGATG+AGG - chr1_2:67413237-67413256 Msa0086670:five_prime_UTR 30.0%
CTTCTGTTAGTTCAACTAAT+AGG - chr1_2:67413293-67413312 Msa0086670:five_prime_UTR 30.0%
TAGTTCAACTAATAGGAGTA+CGG - chr1_2:67413300-67413319 Msa0086670:five_prime_UTR 30.0%
GAATAACATGAAGTGAAGAT+TGG - chr1_2:67413507-67413526 Msa0086670:five_prime_UTR 30.0%
TATATGAAGCTTAAGAAGAG+AGG + chr1_2:67413566-67413585 None:intergenic 30.0%
!!! GGAATTTTTGTTTTGTGTGA+AGG - chr1_2:67413600-67413619 Msa0086670:five_prime_UTR 30.0%
!!! ATTTTTGTTTTGTGTGAAGG+AGG - chr1_2:67413603-67413622 Msa0086670:five_prime_UTR 30.0%
AACCTGAAAAAGTTCAATTC+AGG + chr1_2:67413710-67413729 None:intergenic 30.0%
! AACTTTGTTTGGAACAACGT+TGG + chr1_2:67409857-67409876 None:intergenic 35.0%
GTTGTACGAAATTTGGATGT+TGG + chr1_2:67409920-67409939 None:intergenic 35.0%
! AGAAGTACAAAATTGGAGAG+TGG + chr1_2:67409958-67409977 None:intergenic 35.0%
GAAACTCAAAGTCAAAGTTG+AGG + chr1_2:67410001-67410020 None:intergenic 35.0%
! CAACTTTGACTTTGAGTTTC+TGG - chr1_2:67410001-67410020 Msa0086670:three_prime_UTR 35.0%
!! AAGAAGTGTTATGATCTGTG+CGG + chr1_2:67410226-67410245 None:intergenic 35.0%
CTGTAAGGAAATTTGCCATT+TGG - chr1_2:67410465-67410484 Msa0086670:CDS 35.0%
!!! AGTATTGGTTTTCTGCCAAA+TGG + chr1_2:67410483-67410502 None:intergenic 35.0%
CAATATACACACTCAACAAG+AGG + chr1_2:67410568-67410587 None:intergenic 35.0%
AAATATAGCGACAAAGACGT+GGG + chr1_2:67410690-67410709 None:intergenic 35.0%
AAAATATAGCGACAAAGACG+TGG + chr1_2:67410691-67410710 None:intergenic 35.0%
AAGACGTACATAGATACAAG+AGG - chr1_2:67410796-67410815 Msa0086670:intron 35.0%
TTAGGGAAGAGAAAGTTTGA+TGG - chr1_2:67410934-67410953 Msa0086670:intron 35.0%
TAGGGAAGAGAAAGTTTGAT+GGG - chr1_2:67410935-67410954 Msa0086670:intron 35.0%
!! GTGTGAAATTTTGAGGGAAT+TGG - chr1_2:67411011-67411030 Msa0086670:intron 35.0%
ATATTGAGAGGAAGAGAGTT+AGG - chr1_2:67411142-67411161 Msa0086670:intron 35.0%
TGCCAGAGAGAAACTATTTA+TGG - chr1_2:67411374-67411393 Msa0086670:intron 35.0%
CAGAGAGAAACTATTTATGG+CGG - chr1_2:67411377-67411396 Msa0086670:intron 35.0%
! TTTATGTGATAGCGACCTAA+TGG - chr1_2:67411453-67411472 Msa0086670:intron 35.0%
TTTCAACTGTTGAGGTTAAG+TGG - chr1_2:67411596-67411615 Msa0086670:CDS 35.0%
GGTCAGCTTGAATAAGTATA+AGG + chr1_2:67411646-67411665 None:intergenic 35.0%
TACAAGATTCAGCATGAATC+AGG + chr1_2:67411667-67411686 None:intergenic 35.0%
!! AATCGCTATTTTCCTTGGTT+AGG - chr1_2:67411697-67411716 Msa0086670:intron 35.0%
CTTGAATATATCTTCCAACG+GGG + chr1_2:67411747-67411766 None:intergenic 35.0%
AGAAGATGCTAAAAGATCCA+AGG - chr1_2:67411983-67412002 Msa0086670:intron 35.0%
! GATTCCACAAAGTGCTTATA+TGG - chr1_2:67412070-67412089 Msa0086670:intron 35.0%
AGTTCCATATAAGCACTTTG+TGG + chr1_2:67412077-67412096 None:intergenic 35.0%
! TGGAACTGCAACCATAATTT+TGG - chr1_2:67412090-67412109 Msa0086670:intron 35.0%
GAGGGCAATTTCCAAAATTA+TGG + chr1_2:67412104-67412123 None:intergenic 35.0%
GATACACTATGTTTGAACTG+AGG + chr1_2:67412123-67412142 None:intergenic 35.0%
AAATGTAAAGCCAGACGAAA+AGG + chr1_2:67412233-67412252 None:intergenic 35.0%
! CTTTGGTGGAATCAAAGTTT+TGG - chr1_2:67412446-67412465 Msa0086670:CDS 35.0%
!!! CTTTTTGATTTCGCTACACA+TGG + chr1_2:67412633-67412652 None:intergenic 35.0%
ATGCATACTTGAAGGACATA+TGG + chr1_2:67412674-67412693 None:intergenic 35.0%
ACTTATTGGAGCTTATCTAC+TGG - chr1_2:67412747-67412766 Msa0086670:CDS 35.0%
GATGGAGAAAGATAATACCA+TGG - chr1_2:67413093-67413112 Msa0086670:five_prime_UTR 35.0%
! GTAATGCAGCTTTGTATTCT+TGG + chr1_2:67413171-67413190 None:intergenic 35.0%
! TATGGAACTTTTGATGAGGA+AGG - chr1_2:67413241-67413260 Msa0086670:five_prime_UTR 35.0%
! GATTGAGCGTCTTTTTGATA+AGG - chr1_2:67413345-67413364 Msa0086670:five_prime_UTR 35.0%
! CTTTTTGATAAGGATGAGCA+TGG - chr1_2:67413355-67413374 Msa0086670:five_prime_UTR 35.0%
TCAGTTTACCTAGATAGAAG+AGG - chr1_2:67413484-67413503 Msa0086670:five_prime_UTR 35.0%
CAGTTTACCTAGATAGAAGA+GGG - chr1_2:67413485-67413504 Msa0086670:five_prime_UTR 35.0%
TGTTATTCCCTCTTCTATCT+AGG + chr1_2:67413495-67413514 None:intergenic 35.0%
TCATATATGTAAGGATACGC+CGG - chr1_2:67413579-67413598 Msa0086670:five_prime_UTR 35.0%
!! GACCTGAATTGAACTTTTTC+AGG - chr1_2:67413705-67413724 Msa0086670:five_prime_UTR 35.0%
! TCTGATGATGAGGGATCATA+AGG + chr1_2:67409827-67409846 None:intergenic 40.0%
! TTTGTTTGGAACAACGTTGG+AGG + chr1_2:67409854-67409873 None:intergenic 40.0%
! GTTTCATCTTTTGATGCCTC+TGG - chr1_2:67409874-67409893 Msa0086670:three_prime_UTR 40.0%
!!! TTTTGATGCCTCTGGTTTTC+TGG - chr1_2:67409882-67409901 Msa0086670:three_prime_UTR 40.0%
!!! TTTGATGCCTCTGGTTTTCT+GGG - chr1_2:67409883-67409902 Msa0086670:three_prime_UTR 40.0%
CAAAATTGGAGAGTGGAGAA+AGG + chr1_2:67409951-67409970 None:intergenic 40.0%
! AGTTTCTGGGTTTCCTTGTA+AGG - chr1_2:67410015-67410034 Msa0086670:three_prime_UTR 40.0%
!! GTTCAAGTTGTCTCAAGTTG+AGG + chr1_2:67410419-67410438 None:intergenic 40.0%
! GTCACAATGTCGATTATCTG+CGG - chr1_2:67410538-67410557 Msa0086670:intron 40.0%
AGGCTCAAATTCTTCTGTTG+CGG + chr1_2:67410665-67410684 None:intergenic 40.0%
CTGTGTATGAAGACGATCTT+CGG - chr1_2:67410713-67410732 Msa0086670:intron 40.0%
CGTACATAGATACAAGAGGA+CGG - chr1_2:67410800-67410819 Msa0086670:intron 40.0%
GTACATAGATACAAGAGGAC+GGG - chr1_2:67410801-67410820 Msa0086670:intron 40.0%
TGCTATAAGGGGACTAAATC+TGG - chr1_2:67410873-67410892 Msa0086670:intron 40.0%
GAGTGATTATGCTGTTCTGT+TGG - chr1_2:67410903-67410922 Msa0086670:intron 40.0%
AGGGAAGAGAAAGTTTGATG+GGG - chr1_2:67410936-67410955 Msa0086670:intron 40.0%
!! TGTTCACAATGGGCTGTTAA+AGG - chr1_2:67410963-67410982 Msa0086670:intron 40.0%
! ATGCGGAGTGTGAAATTTTG+AGG - chr1_2:67411004-67411023 Msa0086670:intron 40.0%
! TGCGGAGTGTGAAATTTTGA+GGG - chr1_2:67411005-67411024 Msa0086670:intron 40.0%
TTAAGCGACATACATCTAGC+AGG + chr1_2:67411183-67411202 None:intergenic 40.0%
CGCCATAAATAGTTTCTCTC+TGG + chr1_2:67411379-67411398 None:intergenic 40.0%
GTAAGAAGTCATCCTAACCA+AGG + chr1_2:67411712-67411731 None:intergenic 40.0%
GTTAGGATGACTTCTTACCA+AGG - chr1_2:67411714-67411733 Msa0086670:intron 40.0%
TGCCATGCTTATTGTGCTTA+AGG - chr1_2:67411932-67411951 Msa0086670:intron 40.0%
CACCTTAAGCACAATAAGCA+TGG + chr1_2:67411937-67411956 None:intergenic 40.0%
TATTGTGCTTAAGGTGCATG+AGG - chr1_2:67411941-67411960 Msa0086670:intron 40.0%
ATTGTGCTTAAGGTGCATGA+GGG - chr1_2:67411942-67411961 Msa0086670:intron 40.0%
! TCTTTTAGCATCTTCTCCTC+TGG + chr1_2:67411979-67411998 None:intergenic 40.0%
TTGTTGAGAGAAAGCCTTTC+AGG - chr1_2:67412037-67412056 Msa0086670:intron 40.0%
AATCCTTAGCCATACCTGAA+AGG + chr1_2:67412054-67412073 None:intergenic 40.0%
CTTCCTAATCTGCAGAGAAA+CGG + chr1_2:67412263-67412282 None:intergenic 40.0%
CGTCAGATCATGCCATTATT+TGG - chr1_2:67412357-67412376 Msa0086670:CDS 40.0%
ACTTACATCCAAAGCCCTTT+GGG + chr1_2:67412396-67412415 None:intergenic 40.0%
CATACTTGAAGGACATATGG+TGG + chr1_2:67412671-67412690 None:intergenic 40.0%
! ATAGGTTTTCCCCCTACTTA+CGG - chr1_2:67412704-67412723 Msa0086670:CDS 40.0%
ATCCAAATAGGCCGTAAGTA+GGG + chr1_2:67412718-67412737 None:intergenic 40.0%
AATCCAAATAGGCCGTAAGT+AGG + chr1_2:67412719-67412738 None:intergenic 40.0%
TCTCCATCATCAACTGCAAT+TGG + chr1_2:67413081-67413100 None:intergenic 40.0%
TTGCTTTACAGGTACTTCCA+TGG + chr1_2:67413113-67413132 None:intergenic 40.0%
CAGGAAACAATGACAAGACA+CGG - chr1_2:67413145-67413164 Msa0086670:five_prime_UTR 40.0%
AAAGTTCCATATTCTGACGG+TGG + chr1_2:67413232-67413251 None:intergenic 40.0%
! AACTTTTGATGAGGAAGGAG+AGG - chr1_2:67413246-67413265 Msa0086670:five_prime_UTR 40.0%
AGTAGTACCCAGAAAACCAG+AGG + chr1_2:67409893-67409912 None:intergenic 45.0%
ACAGAGAGAGATGCCTTACA+AGG + chr1_2:67410031-67410050 None:intergenic 45.0%
TCAGGTAGGTATATAGCTGC+AGG + chr1_2:67410270-67410289 None:intergenic 45.0%
TGCATACTCAGTAGATGCCT+AGG - chr1_2:67410510-67410529 Msa0086670:intron 45.0%
!! ATTGTTTAGCTTGCGCTCGT+TGG - chr1_2:67410584-67410603 Msa0086670:intron 45.0%
!! TTGTTTAGCTTGCGCTCGTT+GGG - chr1_2:67410585-67410604 Msa0086670:intron 45.0%
AAAAGATGTCTCCACACTGC+AGG - chr1_2:67410613-67410632 Msa0086670:intron 45.0%
AAAGATGTCTCCACACTGCA+GGG - chr1_2:67410614-67410633 Msa0086670:intron 45.0%
AGGGCATGACAGTGAAACTT+GGG - chr1_2:67410633-67410652 Msa0086670:intron 45.0%
GCTATGGAATCAACCCTGAT+TGG - chr1_2:67410761-67410780 Msa0086670:intron 45.0%
AAGGGGACTAAATCTGGCAA+AGG - chr1_2:67410879-67410898 Msa0086670:intron 45.0%
GGGAAGAGAAAGTTTGATGG+GGG - chr1_2:67410937-67410956 Msa0086670:intron 45.0%
GGAAGAGAAAGTTTGATGGG+GGG - chr1_2:67410938-67410957 Msa0086670:intron 45.0%
! ATGGGGGGTATGTTCACAAT+GGG - chr1_2:67410953-67410972 Msa0086670:intron 45.0%
! ACATTTGCTGGACATTCCCT+TGG - chr1_2:67411060-67411079 Msa0086670:intron 45.0%
GTGCAGAATCGAGATAGACT+TGG - chr1_2:67411117-67411136 Msa0086670:intron 45.0%
CATAAACTCTGTCGTGCTTC+AGG - chr1_2:67411227-67411246 Msa0086670:CDS 45.0%
GAATATATCTTCCAACGGGG+TGG + chr1_2:67411744-67411763 None:intergenic 45.0%
GAGGGATACATGTATACCAG+AGG - chr1_2:67411960-67411979 Msa0086670:intron 45.0%
ACAATGTGATACAAGCGACC+AGG + chr1_2:67412021-67412040 None:intergenic 45.0%
! GAGAGAAAGCCTTTCAGGTA+TGG - chr1_2:67412042-67412061 Msa0086670:intron 45.0%
! AAGCCTTTCAGGTATGGCTA+AGG - chr1_2:67412048-67412067 Msa0086670:intron 45.0%
! GCTTATACAGCCTTTTCGTC+TGG - chr1_2:67412220-67412239 Msa0086670:intron 45.0%
ACACCGTTTCTCTGCAGATT+AGG - chr1_2:67412257-67412276 Msa0086670:intron 45.0%
CGTTTCTCTGCAGATTAGGA+AGG - chr1_2:67412261-67412280 Msa0086670:intron 45.0%
CTGACGTAGCATTGCAAGAA+AGG + chr1_2:67412343-67412362 None:intergenic 45.0%
GATAGAGAAAGAGGCCCAAA+GGG - chr1_2:67412379-67412398 Msa0086670:CDS 45.0%
GACTTACATCCAAAGCCCTT+TGG + chr1_2:67412397-67412416 None:intergenic 45.0%
TCCAAATAGGCCGTAAGTAG+GGG + chr1_2:67412717-67412736 None:intergenic 45.0%
TGAGCACTTGTGAGACTAGT+TGG - chr1_2:67412772-67412791 Msa0086670:CDS 45.0%
! GAGCACTTGTGAGACTAGTT+GGG - chr1_2:67412773-67412792 Msa0086670:CDS 45.0%
! AGCACTTGTGAGACTAGTTG+GGG - chr1_2:67412774-67412793 Msa0086670:CDS 45.0%
TCATCAACTGCAATTGGCAG+TGG + chr1_2:67413075-67413094 None:intergenic 45.0%
!! CTGCCAATTGCAGTTGATGA+TGG - chr1_2:67413075-67413094 Msa0086670:five_prime_UTR 45.0%
!! CGCTGCATGATTTGCTTTAC+AGG + chr1_2:67413124-67413143 None:intergenic 45.0%
AAAGCAAATCATGCAGCGTC+AGG - chr1_2:67413126-67413145 Msa0086670:five_prime_UTR 45.0%
TTTACGCCACCGTCAGAATA+TGG - chr1_2:67413223-67413242 Msa0086670:five_prime_UTR 45.0%
GAGTACGGTTAACGAAAGCT+GGG - chr1_2:67413315-67413334 Msa0086670:five_prime_UTR 45.0%
TAAGGATGAGCATGGTCACA+TGG - chr1_2:67413363-67413382 Msa0086670:five_prime_UTR 45.0%
! GGAGGAGGATCTGATGATGA+GGG + chr1_2:67409836-67409855 None:intergenic 50.0%
! TGGAGGAGGATCTGATGATG+AGG + chr1_2:67409837-67409856 None:intergenic 50.0%
! GTTTGGAACAACGTTGGAGG+AGG + chr1_2:67409851-67409870 None:intergenic 50.0%
CGACATTGTGACTACAGCCT+AGG + chr1_2:67410530-67410549 None:intergenic 50.0%
CAGGGCATGACAGTGAAACT+TGG - chr1_2:67410632-67410651 Msa0086670:intron 50.0%
GGGCATGACAGTGAAACTTG+GGG - chr1_2:67410634-67410653 Msa0086670:intron 50.0%
ACGATCTTCGGAACCCTCTT+TGG - chr1_2:67410725-67410744 Msa0086670:intron 50.0%
CGATCTTCGGAACCCTCTTT+GGG - chr1_2:67410726-67410745 Msa0086670:intron 50.0%
TTGATTCCATAGCCACCAGG+AGG + chr1_2:67410754-67410773 None:intergenic 50.0%
! GATGGGGGGTATGTTCACAA+TGG - chr1_2:67410952-67410971 Msa0086670:intron 50.0%
!! AATGGGCTGTTAAAGGCTGC+TGG - chr1_2:67410970-67410989 Msa0086670:intron 50.0%
GCTGTTAAAGGCTGCTGGAT+GGG - chr1_2:67410975-67410994 Msa0086670:intron 50.0%
!! AAAGGCTGCTGGATGGGTTA+TGG - chr1_2:67410981-67411000 Msa0086670:intron 50.0%
!! TGCTGGATGGGTTATGGATG+CGG - chr1_2:67410987-67411006 Msa0086670:intron 50.0%
TGCAGCTACTCCTGATCCAA+GGG + chr1_2:67411079-67411098 None:intergenic 50.0%
ACTGCTGTTCTCACAACTGG+AGG + chr1_2:67412290-67412309 None:intergenic 50.0%
TGCTCAAACCTTCCATCCAC+TGG + chr1_2:67412314-67412333 None:intergenic 50.0%
GGATAGAGAAAGAGGCCCAA+AGG - chr1_2:67412378-67412397 Msa0086670:CDS 50.0%
CCAAATAGGCCGTAAGTAGG+GGG + chr1_2:67412716-67412735 None:intergenic 50.0%
! GCACTTGTGAGACTAGTTGG+GGG - chr1_2:67412775-67412794 Msa0086670:CDS 50.0%
AGGAAGGAGAGGAGAGTTCA+AGG - chr1_2:67413257-67413276 Msa0086670:five_prime_UTR 50.0%
AGAGGAGAGTTCAAGGTCAG+AGG - chr1_2:67413264-67413283 Msa0086670:five_prime_UTR 50.0%
GGAGTACGGTTAACGAAAGC+TGG - chr1_2:67413314-67413333 Msa0086670:five_prime_UTR 50.0%
TAGCGACAAAGACGTGGGAC+AGG + chr1_2:67410685-67410704 None:intergenic 55.0%
! GGGTTGATTCCATAGCCACC+AGG + chr1_2:67410757-67410776 None:intergenic 55.0%
GGCTGTTAAAGGCTGCTGGA+TGG - chr1_2:67410974-67410993 Msa0086670:intron 55.0%
GCTGGACATTCCCTTGGATC+AGG - chr1_2:67411066-67411085 Msa0086670:intron 55.0%
CTGCAGCTACTCCTGATCCA+AGG + chr1_2:67411080-67411099 None:intergenic 55.0%
! AGTAGCTGCAGCGTTGAGCA+TGG - chr1_2:67411089-67411108 Msa0086670:intron 55.0%
CCAGGTGCATAGAGTCTCCT+TGG + chr1_2:67412003-67412022 None:intergenic 55.0%
CCAAGGAGACTCTATGCACC+TGG - chr1_2:67412000-67412019 Msa0086670:intron 55.0%
GGCACTGCTGTTCTCACAAC+TGG + chr1_2:67412293-67412312 None:intergenic 55.0%
TGTGAGAACAGCAGTGCCAG+TGG - chr1_2:67412295-67412314 Msa0086670:intron 55.0%
AGAACAGCAGTGCCAGTGGA+TGG - chr1_2:67412299-67412318 Msa0086670:intron 55.0%
GAAAGAGGCCCAAAGGGCTT+TGG - chr1_2:67412385-67412404 Msa0086670:CDS 55.0%
CCCCCTACTTACGGCCTATT+TGG - chr1_2:67412713-67412732 Msa0086670:CDS 55.0%
! AGACTAGTTGGGGGAGCTTG+TGG - chr1_2:67412784-67412803 Msa0086670:CDS 55.0%
! GACGGTGGCGTAAAAGCATG+TGG + chr1_2:67413217-67413236 None:intergenic 55.0%
CACTGTCATGCCCTGCAGTG+TGG + chr1_2:67410627-67410646 None:intergenic 60.0%
! AGCTGCAGCGTTGAGCATGG+TGG - chr1_2:67411092-67411111 Msa0086670:intron 60.0%
CAGCAGTGCCAGTGGATGGA+AGG - chr1_2:67412303-67412322 Msa0086670:intron 60.0%
! TAGCTTGCGCTCGTTGGGCG+TGG - chr1_2:67410590-67410609 Msa0086670:intron 65.0%
AACCCTCTTTGGGCGCCTCC+TGG - chr1_2:67410736-67410755 Msa0086670:intron 65.0%
!! CACCAGGAGGCGCCCAAAGA+GGG + chr1_2:67410741-67410760 None:intergenic 65.0%
ACCAAGGACAGCCACCCCGT+TGG - chr1_2:67411730-67411749 Msa0086670:intron 65.0%
TCCAACGGGGTGGCTGTCCT+TGG + chr1_2:67411734-67411753 None:intergenic 65.0%
!! CCACCAGGAGGCGCCCAAAG+AGG + chr1_2:67410742-67410761 None:intergenic 70.0%
CCTCTTTGGGCGCCTCCTGG+TGG - chr1_2:67410739-67410758 Msa0086670:intron 70.0%
TGGGCGCCTCCTGGTGGCTA+TGG - chr1_2:67410745-67410764 Msa0086670:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67409792 67413784 67409792 ID=Msa0086670;Name=Msa0086670
chr1_2 mRNA 67409792 67413784 67409792 ID=Msa0086670-mRNA-1;Parent=Msa0086670;Name=Msa0086670-mRNA-1;_AED=0.17;_eAED=0.17;_QI=752|1|1|1|1|1|5|385|446
chr1_2 exon 67409792 67410488 67409792 ID=Msa0086670-mRNA-1:exon:22905;Parent=Msa0086670-mRNA-1
chr1_2 exon 67411167 67411302 67411167 ID=Msa0086670-mRNA-1:exon:22904;Parent=Msa0086670-mRNA-1
chr1_2 exon 67411518 67411646 67411518 ID=Msa0086670-mRNA-1:exon:22903;Parent=Msa0086670-mRNA-1
chr1_2 exon 67411799 67411857 67411799 ID=Msa0086670-mRNA-1:exon:22902;Parent=Msa0086670-mRNA-1
chr1_2 exon 67412328 67413784 67412328 ID=Msa0086670-mRNA-1:exon:22901;Parent=Msa0086670-mRNA-1
chr1_2 five_prime_UTR 67413033 67413784 67413033 ID=Msa0086670-mRNA-1:five_prime_utr;Parent=Msa0086670-mRNA-1
chr1_2 CDS 67412328 67413032 67412328 ID=Msa0086670-mRNA-1:cds;Parent=Msa0086670-mRNA-1
chr1_2 CDS 67411799 67411857 67411799 ID=Msa0086670-mRNA-1:cds;Parent=Msa0086670-mRNA-1
chr1_2 CDS 67411518 67411646 67411518 ID=Msa0086670-mRNA-1:cds;Parent=Msa0086670-mRNA-1
chr1_2 CDS 67411167 67411302 67411167 ID=Msa0086670-mRNA-1:cds;Parent=Msa0086670-mRNA-1
chr1_2 CDS 67410177 67410488 67410177 ID=Msa0086670-mRNA-1:cds;Parent=Msa0086670-mRNA-1
chr1_2 three_prime_UTR 67409792 67410176 67409792 ID=Msa0086670-mRNA-1:three_prime_utr;Parent=Msa0086670-mRNA-1
Gene Sequence

>Msa0086670

ATGTCGATTATCTGCGGTTTTCCTCTTGTTGAGTGTGTATATTGTTTAGCTTGCGCTCGTTGGGCGTGGAAAAGATGTCTCCACACTGCAGGGCATGACAGTGAAACTTGGGGATTTGCCGCAACAGAAGAATTTGAGCCTGTCCCACGTCTTTGTCGCTATATTTTAGCTGTGTATGAAGACGATCTTCGGAACCCTCTTTGGGCGCCTCCTGGTGGCTATGGAATCAACCCTGATTGGTTATTACTTAGAAAGACGTACATAGATACAAGAGGACGGGCTCCACCATATATATTGTATCTTGATCATGATCATGCTGATATAGTTCTTGCTATAAGGGGACTAAATCTGGCAAAGGAGAGTGATTATGCTGTTCTGTTGGATAATAAATTAGGGAAGAGAAAGTTTGATGGGGGGTATGTTCACAATGGGCTGTTAAAGGCTGCTGGATGGGTTATGGATGCGGAGTGTGAAATTTTGAGGGAATTGGTAGAGAAGTATCCAAATTATACTCTTACATTTGCTGGACATTCCCTTGGATCAGGAGTAGCTGCAGCGTTGAGCATGGTGGTTGTGCAGAATCGAGATAGACTTGGAAATATTGAGAGGAAGAGAGTTAGGTGTTATGCTATTGCTCCTGCTAGATGTATGTCGCTTAATTTGGCAGTCAGATATGCAGATGTCATAAACTCTGTCGTGCTTCAGGATGACTTCTTACCAAGGACAGCCACCCCGTTGGAAGATATATTCAAGTCTCTTTTCTGTTTGCCATGCTTATTGTGCTTAAGGTGCATGAGGGATACATGTATACCAGAGGAGAAGATGCTAAAAGATCCAAGGAGACTCTATGCACCTGGTCGCTTGTATCACATTGTTGAGAGAAAGCCTTTCAGATTAGGAAGGTTTCCTCCAGTTGTGAGAACAGCAGTGCCAGTGGATGGAAGGTTTGAGCATATCGTCCTTTCTTGCAATGCTACGTCAGATCATGCCATTATTTGGATAGAGAAAGAGGCCCAAAGGGCTTTGGATTTGATGATGGAGAAAGATAATACCATGGAAGTACCTGTAAAGCAAATCATGCAGCGTCAGGAAACAATGACAAGACACGGCCAAGAATACAAAGCTGCATTACAAAGAGCGAAAACATTAGACATTCCACATGCTTTTACGCCACCGTCAGAATATGGAACTTTTGATGAGGAAGGAGAGGAGAGTTCAAGGTCAGAGGCTGAGTCTTCTGTTAGTTCAACTAATAGGAGTACGGTTAACGAAAGCTGGGATGTATTGATTGAGCGTCTTTTTGATAAGGATGAGCATGGTCACATGGTGCTCAAGAGATGA
Protein sequence

>Msa0086670

MSIICGFPLVECVYCLACARWAWKRCLHTAGHDSETWGFAATEEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYIDTRGRAPPYILYLDHDHADIVLAIRGLNLAKESDYAVLLDNKLGKRKFDGGYVHNGLLKAAGWVMDAECEILRELVEKYPNYTLTFAGHSLGSGVAAALSMVVVQNRDRLGNIERKRVRCYAIAPARCMSLNLAVRYADVINSVVLQDDFLPRTATPLEDIFKSLFCLPCLLCLRCMRDTCIPEEKMLKDPRRLYAPGRLYHIVERKPFRLGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAIIWIEKEAQRALDLMMEKDNTMEVPVKQIMQRQETMTRHGQEYKAALQRAKTLDIPHAFTPPSEYGTFDEEGEESSRSEAESSVSSTNRSTVNESWDVLIERLFDKDEHGHMVLKR*