AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1304890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304890 MtrunA17_Chr7g0272081 95.200 125 6 0 1 125 1 125 5.87e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304890 AT1G56260.2 49.138 116 58 1 1 115 1 116 7.93e-38 124
Msa1304890 AT1G56260.1 49.138 116 58 1 1 115 1 116 7.93e-38 124

Find 51 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTTATATGCTTCT+AGG 0.224256 8_3:-68181127 Msa1304890:three_prime_UTR
GGAACATCAGTCAGAATAAT+TGG 0.230539 8_3:-68184059 Msa1304890:CDS
AAGCCCTCTGTCCATTCTTC+AGG 0.290788 8_3:-68185079 Msa1304890:intron
AGCCAACCATTTGAATAATT+CGG 0.300995 8_3:-68181258 Msa1304890:CDS
ATTCATTACATTGCACAATC+AGG 0.318021 8_3:+68180878 None:intergenic
ATTCGGCAACTTAACTTTGT+AGG 0.318906 8_3:-68181241 Msa1304890:exon
TTTACAAGTTACAACCTTCA+TGG 0.334882 8_3:-68181055 Msa1304890:three_prime_UTR
GAGGCTCTGCGACAAACTTA+AGG 0.393479 8_3:-68180905 Msa1304890:three_prime_UTR
ATACTTCTATGAAAATAGTA+AGG 0.422076 8_3:+68181177 None:intergenic
GGATCTGTCTACCAATTCAT+TGG 0.425515 8_3:-68181577 Msa1304890:CDS
GACATTTAGTTGTAAATTTG+AGG 0.431238 8_3:-68180924 Msa1304890:three_prime_UTR
TAAGAAGCTCGCCAATGAAT+TGG 0.437510 8_3:+68181566 None:intergenic
CAGATCCAACTTGAAACTTA+AGG 0.441876 8_3:+68181593 None:intergenic
TTGCTTCGAATGATGCCATC+AGG 0.454505 8_3:+68184141 None:intergenic
ATATGCTGTGCATGCTTCAC+GGG 0.455517 8_3:-68180947 Msa1304890:three_prime_UTR
TGCCGAATTATTCAAATGGT+TGG 0.458705 8_3:+68181256 None:intergenic
TCCGTGAATCAAAGTTAAAA+CGG 0.459387 8_3:-68185181 None:intergenic
AAAGAAGAAAACCTGAAGAA+TGG 0.480856 8_3:+68185068 None:intergenic
CACGAATACTCTTTAGAGAC+AGG 0.496480 8_3:-68181676 Msa1304890:CDS
AAGGACCTTAAGTTTCAAGT+TGG 0.504185 8_3:-68181598 Msa1304890:CDS
AATATGCTGTGCATGCTTCA+CGG 0.506595 8_3:-68180948 Msa1304890:three_prime_UTR
GCATCATTCGAAGCAAAATC+CGG 0.514495 8_3:-68184134 Msa1304890:CDS
TTCATTACATTGCACAATCA+GGG 0.516627 8_3:+68180879 None:intergenic
CACGTACCTCATCATCAGTT+CGG 0.519854 8_3:+68181542 None:intergenic
ACCGCGAGGGTAGACGGCGG+TGG 0.528791 8_3:+68185127 None:intergenic
AAGTTGCCGAATTATTCAAA+TGG 0.529169 8_3:+68181252 None:intergenic
GCGAGGGTAGACGGCGGTGG+AGG 0.546576 8_3:+68185130 None:intergenic
AAAATGAAATGTCACCATGA+AGG 0.555013 8_3:+68181041 None:intergenic
ACGACCACCGCGAGGGTAGA+CGG 0.565243 8_3:+68185121 None:intergenic
TTTATATGCTTCTAGGACAA+GGG 0.567964 8_3:-68181120 Msa1304890:three_prime_UTR
TAGTAGCAAGTGAAGCCTGA+TGG 0.580797 8_3:-68184156 Msa1304890:exon
GTTTATATGCTTCTAGGACA+AGG 0.581797 8_3:-68181121 Msa1304890:three_prime_UTR
TTGTAAAGAAACTAACGCAC+CGG 0.593486 8_3:+68184115 None:intergenic
AGTTAGTACTGAGCATCTGA+AGG 0.602957 8_3:-68181617 Msa1304890:CDS
TACCATCGATGACTGTTGCA+AGG 0.616671 8_3:+68181653 None:intergenic
GGCCTTGCAACAGTCATCGA+TGG 0.618120 8_3:-68181655 Msa1304890:CDS
TACTTCTATGAAAATAGTAA+GGG 0.622395 8_3:+68181178 None:intergenic
AAACCTGAAGAATGGACAGA+GGG 0.630357 8_3:+68185076 None:intergenic
AAACTGTTTCAAAAGCAGCA+AGG 0.639053 8_3:+68181283 None:intergenic
TCTTATCCGAACTGATGATG+AGG 0.648922 8_3:-68181548 Msa1304890:intron
AATGTACACGACCACCGCGA+GGG 0.651221 8_3:+68185114 None:intergenic
CATGATGACATCAAAGAGTG+TGG 0.652971 8_3:-68180987 Msa1304890:three_prime_UTR
AAAACCTGAAGAATGGACAG+AGG 0.659411 8_3:+68185075 None:intergenic
CGTGTTGGTAGAAATGTCGA+CGG 0.665620 8_3:-68181332 Msa1304890:CDS
CGGCGGTGGAGGCAGAACAG+AGG 0.670181 8_3:+68185141 None:intergenic
GTGTTGGTAGAAATGTCGAC+GGG 0.670397 8_3:-68181331 Msa1304890:CDS
TCCACCGCCGTCTACCCTCG+CGG 0.675678 8_3:-68185128 Msa1304890:five_prime_UTR
TATGCTGTGCATGCTTCACG+GGG 0.690045 8_3:-68180946 Msa1304890:three_prime_UTR
ACCGCCGTCTACCCTCGCGG+TGG 0.702706 8_3:-68185125 Msa1304890:five_prime_UTR
CAATGTACACGACCACCGCG+AGG 0.707239 8_3:+68185113 None:intergenic
ACCACCGCGAGGGTAGACGG+CGG 0.802445 8_3:+68185124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCAAAATTAGAAT+GGG + chr8_3:68182016-68182035 None:intergenic 10.0%
!! TCATAATATAAAAACATAAA+AGG - chr8_3:68184831-68184850 Msa1304890:intron 10.0%
!!! TTGTTATTTATTGTTAAAGA+AGG - chr8_3:68181298-68181317 Msa1304890:CDS 15.0%
!!! TGTTATTTATTGTTAAAGAA+GGG - chr8_3:68181299-68181318 Msa1304890:CDS 15.0%
!! CAAATATATCAAAATTAGAA+TGG + chr8_3:68182017-68182036 None:intergenic 15.0%
!! AGAATTTATGAAAATAGATT+AGG - chr8_3:68182345-68182364 Msa1304890:intron 15.0%
!!! TATAACTTTAAAAAATCACT+TGG + chr8_3:68183653-68183672 None:intergenic 15.0%
!! AGTTATATATATAAGAGAAA+TGG - chr8_3:68183666-68183685 Msa1304890:intron 15.0%
!! AATGATTAATGAATATATCA+AGG - chr8_3:68183776-68183795 Msa1304890:intron 15.0%
!! AAATAGATAATTAGATATAG+AGG + chr8_3:68184206-68184225 None:intergenic 15.0%
!!! AATGTTTTTTGTTTTTTGTT+AGG - chr8_3:68184668-68184687 Msa1304890:intron 15.0%
!!! ATGTTTTTTGTTTTTTGTTA+GGG - chr8_3:68184669-68184688 Msa1304890:intron 15.0%
!! AAAAAGTAGAGAAATTGAAA+CGG + chr8_3:68181032-68181051 None:intergenic 20.0%
!! ATAATCAAAGTGAAAAAACA+GGG + chr8_3:68181073-68181092 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG + chr8_3:68181196-68181215 None:intergenic 20.0%
!! GTTATTTATTGTTAAAGAAG+GGG - chr8_3:68181300-68181319 Msa1304890:CDS 20.0%
!!! TTTTTATAAGCTATTCTTGA+GGG - chr8_3:68181462-68181481 Msa1304890:intron 20.0%
!!! TTAAAATCTTTTATGTGATG+AGG - chr8_3:68181679-68181698 Msa1304890:CDS 20.0%
!! AATGTGTAAATTCATGTTAA+TGG + chr8_3:68181747-68181766 None:intergenic 20.0%
!! ATTGATATCTTTAGTAACTT+TGG + chr8_3:68182734-68182753 None:intergenic 20.0%
!!! TCTAGTCTGTTTTAATTATA+AGG - chr8_3:68182854-68182873 Msa1304890:intron 20.0%
!! TTATAGTAATAAGAACTAGA+AGG + chr8_3:68183222-68183241 None:intergenic 20.0%
!!! AGTTTTATCAAATTCAGTTT+GGG + chr8_3:68183437-68183456 None:intergenic 20.0%
!!! TAGTTTTATCAAATTCAGTT+TGG + chr8_3:68183438-68183457 None:intergenic 20.0%
!! AAACTGAATTTGATAAAACT+AGG - chr8_3:68183437-68183456 Msa1304890:intron 20.0%
!! TTCAATATTGTGATTAATTG+TGG + chr8_3:68183829-68183848 None:intergenic 20.0%
!!! GTATATTTTAACACAAATTC+TGG - chr8_3:68183873-68183892 Msa1304890:intron 20.0%
!! ATATTTGAACACAATTTCAA+TGG - chr8_3:68183947-68183966 Msa1304890:intron 20.0%
!!! TCGAAATTTGTGTTAAATTT+TGG - chr8_3:68184166-68184185 Msa1304890:five_prime_UTR 20.0%
!!! CGAAATTTGTGTTAAATTTT+GGG - chr8_3:68184167-68184186 Msa1304890:five_prime_UTR 20.0%
!! TACTTCTATGAAAATAGTAA+GGG + chr8_3:68184862-68184881 None:intergenic 20.0%
!! ATACTTCTATGAAAATAGTA+AGG + chr8_3:68184863-68184882 None:intergenic 20.0%
!!! TTTTATTATACGCTTTCTTT+TGG - chr8_3:68185015-68185034 Msa1304890:intron 20.0%
! GATAATCAAAGTGAAAAAAC+AGG + chr8_3:68181074-68181093 None:intergenic 25.0%
!! GTAGTGATTTATCTTACTTT+TGG - chr8_3:68181096-68181115 Msa1304890:three_prime_UTR 25.0%
! ACATCAATATTGTAGTGATA+AGG + chr8_3:68181340-68181359 None:intergenic 25.0%
!! GTTTTTATAAGCTATTCTTG+AGG - chr8_3:68181461-68181480 Msa1304890:intron 25.0%
! TTTCTATAAGCTCTTTCAAA+CGG - chr8_3:68181531-68181550 Msa1304890:intron 25.0%
!! TAATTAGGGTTTGTTTGAAT+TGG + chr8_3:68181597-68181616 None:intergenic 25.0%
!! GTTATATTTTTCCAAATTGC+AGG - chr8_3:68181841-68181860 Msa1304890:intron 25.0%
!!! TTGTGACTTTTTCTTTTGTT+TGG - chr8_3:68182034-68182053 Msa1304890:intron 25.0%
! CAGAACATAATTTCACATAA+GGG + chr8_3:68182068-68182087 None:intergenic 25.0%
! ACAGAACATAATTTCACATA+AGG + chr8_3:68182069-68182088 None:intergenic 25.0%
! TGAAATTATGTTCTGTCTTT+GGG - chr8_3:68182073-68182092 Msa1304890:intron 25.0%
!!! TTTTAATGCTTGAGGTATTT+AGG - chr8_3:68182128-68182147 Msa1304890:intron 25.0%
! AATAAACTGTTTATCCAAAC+AGG + chr8_3:68182189-68182208 None:intergenic 25.0%
!!! ACTGATTATCAAGCTTTTTT+CGG + chr8_3:68182371-68182390 None:intergenic 25.0%
! TAGATAAACTCAAATAAGCT+TGG - chr8_3:68182433-68182452 Msa1304890:intron 25.0%
! AGATAAACTCAAATAAGCTT+GGG - chr8_3:68182434-68182453 Msa1304890:intron 25.0%
! GGGAACAAATATGATATTTA+CGG - chr8_3:68182570-68182589 Msa1304890:intron 25.0%
!!! AATTTTGACAAATGCTAAAC+AGG - chr8_3:68182631-68182650 Msa1304890:intron 25.0%
!! GGTAGAGAACAAATATTTTT+GGG + chr8_3:68182771-68182790 None:intergenic 25.0%
! CAAAAATATTTGTTCTCTAC+CGG - chr8_3:68182770-68182789 Msa1304890:intron 25.0%
!! TTCTTGCTAATTCATTTTGA+TGG - chr8_3:68182807-68182826 Msa1304890:intron 25.0%
! ACAGACTAGATGAAAATAAA+AGG + chr8_3:68182844-68182863 None:intergenic 25.0%
!!! AATAACTGGAATGCTTTTTA+TGG + chr8_3:68182907-68182926 None:intergenic 25.0%
!! AATCCATTTAAAATCTACAG+GGG + chr8_3:68183250-68183269 None:intergenic 25.0%
!! GAATCCATTTAAAATCTACA+GGG + chr8_3:68183251-68183270 None:intergenic 25.0%
!! TGAATCCATTTAAAATCTAC+AGG + chr8_3:68183252-68183271 None:intergenic 25.0%
! AATATCTTCAACTGAAACAA+TGG - chr8_3:68183407-68183426 Msa1304890:intron 25.0%
! ATATCTTCAACTGAAACAAT+GGG - chr8_3:68183408-68183427 Msa1304890:intron 25.0%
!! CTTTAAAAAATCACTTGGAT+TGG + chr8_3:68183648-68183667 None:intergenic 25.0%
! AAATATACACCTAAAAAACG+TGG + chr8_3:68183861-68183880 None:intergenic 25.0%
!! ATTATGATTGTGAAGTATCT+TGG - chr8_3:68184308-68184327 Msa1304890:intron 25.0%
! GACATTTAGTTGTAAATTTG+AGG - chr8_3:68185113-68185132 Msa1304890:five_prime_UTR 25.0%
AAAGAAGAAAACCTGAAGAA+TGG + chr8_3:68180972-68180991 None:intergenic 30.0%
GTACAAGAATGTGAATCATA+AGG + chr8_3:68181378-68181397 None:intergenic 30.0%
! AAGTCAAACTGTTTTCATGT+AGG - chr8_3:68181429-68181448 Msa1304890:intron 30.0%
ACAAACCCTAATTAATTGAC+TGG - chr8_3:68181603-68181622 Msa1304890:CDS 30.0%
CAAACCCTAATTAATTGACT+GGG - chr8_3:68181604-68181623 Msa1304890:CDS 30.0%
ATCTCCCAGTCAATTAATTA+GGG + chr8_3:68181611-68181630 None:intergenic 30.0%
AATCTCCCAGTCAATTAATT+AGG + chr8_3:68181612-68181631 None:intergenic 30.0%
CAATTTCCTTCACAAATGAA+TGG + chr8_3:68181655-68181674 None:intergenic 30.0%
! TTTTATGTGATGAGGTCATA+TGG - chr8_3:68181687-68181706 Msa1304890:intron 30.0%
! TGTTATGCTACTCAAACTTT+TGG + chr8_3:68181719-68181738 None:intergenic 30.0%
GTGAAATTATGTTCTGTCTT+TGG - chr8_3:68182072-68182091 Msa1304890:intron 30.0%
! AGTGTGATTTTTAATGCTTG+AGG - chr8_3:68182120-68182139 Msa1304890:intron 30.0%
TTATGCATAAGTGCTTATCA+TGG + chr8_3:68182236-68182255 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr8_3:68182408-68182427 None:intergenic 30.0%
! TTCTAGTAACAAAGGTTTTG+TGG - chr8_3:68182468-68182487 Msa1304890:intron 30.0%
AGACACAAAATAACTACTAC+TGG + chr8_3:68182497-68182516 None:intergenic 30.0%
!! AGTAGTTATTTTGTGTCTGT+TGG - chr8_3:68182499-68182518 Msa1304890:intron 30.0%
!! GTAGTTATTTTGTGTCTGTT+GGG - chr8_3:68182500-68182519 Msa1304890:intron 30.0%
!! TAGTTATTTTGTGTCTGTTG+GGG - chr8_3:68182501-68182520 Msa1304890:intron 30.0%
TGACAAAACCAAAAGCAAAA+TGG + chr8_3:68182530-68182549 None:intergenic 30.0%
!!! TTTTGCTTTTGGTTTTGTCA+TGG - chr8_3:68182530-68182549 Msa1304890:intron 30.0%
! CGGTAGAGAACAAATATTTT+TGG + chr8_3:68182772-68182791 None:intergenic 30.0%
AAGAAAACATTGCTATCTTC+CGG + chr8_3:68182792-68182811 None:intergenic 30.0%
!! AATTCATTTTGATGGAATGC+AGG - chr8_3:68182815-68182834 Msa1304890:intron 30.0%
! AAAGCATTCCAGTTATTATC+CGG - chr8_3:68182910-68182929 Msa1304890:intron 30.0%
TGATAGCTGAAAACTAATAC+AGG + chr8_3:68182973-68182992 None:intergenic 30.0%
! CATAGTACTGAAAATAGTTC+TGG - chr8_3:68183152-68183171 Msa1304890:intron 30.0%
!!! GTTAGTTTTCTTGTTGACTT+TGG - chr8_3:68183285-68183304 Msa1304890:intron 30.0%
! GACACTATATATTGCTGATT+TGG - chr8_3:68183346-68183365 Msa1304890:intron 30.0%
TATCTTCAACTGAAACAATG+GGG - chr8_3:68183409-68183428 Msa1304890:intron 30.0%
CTGAATTTGATAAAACTAGG+AGG - chr8_3:68183440-68183459 Msa1304890:intron 30.0%
ACATCTACTGGTAATTGAAA+CGG - chr8_3:68183486-68183505 Msa1304890:intron 30.0%
ATCTAAATTGTTGTCGAATC+TGG + chr8_3:68183716-68183735 None:intergenic 30.0%
AGATTCGACAACAATTTAGA+TGG - chr8_3:68183715-68183734 Msa1304890:intron 30.0%
GTTAACGCAATTCAAATACA+TGG - chr8_3:68183737-68183756 Msa1304890:intron 30.0%
!!! TGTCATTAACCACGTTTTTT+AGG - chr8_3:68183849-68183868 Msa1304890:intron 30.0%
ATTTGAACACCTAAAAATCG+TGG - chr8_3:68183990-68184009 Msa1304890:intron 30.0%
! CATCATTAACCACGATTTTT+AGG + chr8_3:68184002-68184021 None:intergenic 30.0%
GTTAATGATGTTCAAAATCG+TGG - chr8_3:68184012-68184031 Msa1304890:intron 30.0%
TGTGTTTAGTGAATGGTTAA+TGG - chr8_3:68184058-68184077 Msa1304890:CDS 30.0%
GTGTTTAGTGAATGGTTAAT+GGG - chr8_3:68184059-68184078 Msa1304890:CDS 30.0%
GATGGTTAATGAAGATAACA+AGG + chr8_3:68184093-68184112 None:intergenic 30.0%
GTATGGTTAATTACGTTCAT+TGG + chr8_3:68184115-68184134 None:intergenic 30.0%
GTTAAGACAGTTCAAATGTA+TGG + chr8_3:68184132-68184151 None:intergenic 30.0%
GTCTTCTAAATGCAATCATA+CGG + chr8_3:68184250-68184269 None:intergenic 30.0%
!! TGAGTTTGCTATAGAAAATC+GGG + chr8_3:68184552-68184571 None:intergenic 30.0%
!! GTGAGTTTGCTATAGAAAAT+CGG + chr8_3:68184553-68184572 None:intergenic 30.0%
! TTTTCTATAGCAAACTCACT+TGG - chr8_3:68184554-68184573 Msa1304890:intron 30.0%
AGCCAACCATTTGAATAATT+CGG - chr8_3:68184779-68184798 Msa1304890:intron 30.0%
AAGTTGCCGAATTATTCAAA+TGG + chr8_3:68184788-68184807 None:intergenic 30.0%
AAGCATGTTTATATGCTTCT+AGG - chr8_3:68184910-68184929 Msa1304890:intron 30.0%
!! TTTATATGCTTCTAGGACAA+GGG - chr8_3:68184917-68184936 Msa1304890:intron 30.0%
TTTACAAGTTACAACCTTCA+TGG - chr8_3:68184982-68185001 Msa1304890:intron 30.0%
AAAATGAAATGTCACCATGA+AGG + chr8_3:68184999-68185018 None:intergenic 30.0%
TTCATTACATTGCACAATCA+GGG + chr8_3:68185161-68185180 None:intergenic 30.0%
ATTCATTACATTGCACAATC+AGG + chr8_3:68185162-68185181 None:intergenic 30.0%
! CATGAAGAATACAGCCTTTT+TGG - chr8_3:68181179-68181198 Msa1304890:three_prime_UTR 35.0%
TGAATCATAAGGTGGTTTGA+GGG + chr8_3:68181367-68181386 None:intergenic 35.0%
CAAGAATGTGAATCATAAGG+TGG + chr8_3:68181375-68181394 None:intergenic 35.0%
! ACTGTTTTCATGTAGGCTAT+AGG - chr8_3:68181436-68181455 Msa1304890:intron 35.0%
CAATCACCATTCATTTGTGA+AGG - chr8_3:68181646-68181665 Msa1304890:CDS 35.0%
TTCAATTACAGCCTGCAATT+TGG + chr8_3:68181855-68181874 None:intergenic 35.0%
TTGTAAAGAAACTAACGCAC+CGG + chr8_3:68181925-68181944 None:intergenic 35.0%
GATGTTCCTTGCTTGAAAAA+AGG + chr8_3:68181966-68181985 None:intergenic 35.0%
GGAACATCAGTCAGAATAAT+TGG - chr8_3:68181978-68181997 Msa1304890:intron 35.0%
TAAATGCATAACAAGACCTG+AGG + chr8_3:68182163-68182182 None:intergenic 35.0%
!! TCAGGTCTTGTTATGCATTT+AGG - chr8_3:68182162-68182181 Msa1304890:intron 35.0%
!! CAGGTCTTGTTATGCATTTA+GGG - chr8_3:68182163-68182182 Msa1304890:intron 35.0%
!! GCTGTTTTCATGAGCTATAT+TGG - chr8_3:68182322-68182341 Msa1304890:intron 35.0%
CAGTGAACTTCTAGTAACAA+AGG - chr8_3:68182460-68182479 Msa1304890:intron 35.0%
! TTTTGTCATGGATTTGTAGC+AGG - chr8_3:68182542-68182561 Msa1304890:intron 35.0%
AATAAACCCCTCAATCTTAG+AGG - chr8_3:68182706-68182725 Msa1304890:intron 35.0%
!! TTTGGAACCTCTAAGATTGA+GGG + chr8_3:68182716-68182735 None:intergenic 35.0%
TCATGTGATCTTTCCATTCA+TGG - chr8_3:68183084-68183103 Msa1304890:intron 35.0%
! GAATCACCAAACTTCAGTTT+TGG - chr8_3:68183195-68183214 Msa1304890:intron 35.0%
! TTGCCCCTGTAGATTTTAAA+TGG - chr8_3:68183244-68183263 Msa1304890:intron 35.0%
ATCTTCAACTGAAACAATGG+GGG - chr8_3:68183410-68183429 Msa1304890:intron 35.0%
TTGATAAAACTAGGAGGTTG+AGG - chr8_3:68183446-68183465 Msa1304890:intron 35.0%
TAACCATAGAAGACATCTAC+TGG - chr8_3:68183474-68183493 Msa1304890:intron 35.0%
TTACCAGTAGATGTCTTCTA+TGG + chr8_3:68183480-68183499 None:intergenic 35.0%
CAAACTAACCTACCGAAATT+GGG - chr8_3:68183554-68183573 Msa1304890:intron 35.0%
AAGCAACTGTGTTTAGTGAA+TGG - chr8_3:68184051-68184070 Msa1304890:intron 35.0%
GGTTAATTACGTTCATTGGA+TGG + chr8_3:68184111-68184130 None:intergenic 35.0%
TTCTAAATGCAATCATACGG+TGG + chr8_3:68184247-68184266 None:intergenic 35.0%
! AAGGACCTTAAGTTTCAAGT+TGG - chr8_3:68184439-68184458 Msa1304890:intron 35.0%
CAGATCCAACTTGAAACTTA+AGG + chr8_3:68184447-68184466 None:intergenic 35.0%
! TTTGCTATAGAAAATCGGGT+AGG + chr8_3:68184548-68184567 None:intergenic 35.0%
! TTTTTGTTAGGGAGTTTTGC+AGG - chr8_3:68184680-68184699 Msa1304890:intron 35.0%
AAACTGTTTCAAAAGCAGCA+AGG + chr8_3:68184757-68184776 None:intergenic 35.0%
TGCCGAATTATTCAAATGGT+TGG + chr8_3:68184784-68184803 None:intergenic 35.0%
ATTCGGCAACTTAACTTTGT+AGG - chr8_3:68184796-68184815 Msa1304890:intron 35.0%
!! GTTTATATGCTTCTAGGACA+AGG - chr8_3:68184916-68184935 Msa1304890:intron 35.0%
!! GCTTTCTTTTGGCTACAAAT+AGG - chr8_3:68185026-68185045 Msa1304890:intron 35.0%
AAACCTGAAGAATGGACAGA+GGG + chr8_3:68180964-68180983 None:intergenic 40.0%
AAAACCTGAAGAATGGACAG+AGG + chr8_3:68180965-68180984 None:intergenic 40.0%
GTGAATCATAAGGTGGTTTG+AGG + chr8_3:68181368-68181387 None:intergenic 40.0%
GCATCATTCGAAGCAAAATC+CGG - chr8_3:68181903-68181922 Msa1304890:intron 40.0%
GCTTGAAAAAAGGAGACGAT+GGG + chr8_3:68181956-68181975 None:intergenic 40.0%
TGCTTGAAAAAAGGAGACGA+TGG + chr8_3:68181957-68181976 None:intergenic 40.0%
!!! TCGTCTCCTTTTTTCAAGCA+AGG - chr8_3:68181957-68181976 Msa1304890:intron 40.0%
!!! TTTGGGTTTTGTTGCTGATG+AGG - chr8_3:68182090-68182109 Msa1304890:intron 40.0%
ATTTAGGTAATCCCATCCTC+AGG - chr8_3:68182144-68182163 Msa1304890:intron 40.0%
! TTATGCATTTAGGGCCTGTT+TGG - chr8_3:68182172-68182191 Msa1304890:intron 40.0%
! TGGGGTTACCATTTTGCTTT+TGG - chr8_3:68182519-68182538 Msa1304890:intron 40.0%
GTAGTGTTAGTCATGCAGAT+AGG - chr8_3:68182608-68182627 Msa1304890:intron 40.0%
AGGTATAGATTTCACCAGCT+AGG - chr8_3:68182651-68182670 Msa1304890:intron 40.0%
!! TTGGAACCTCTAAGATTGAG+GGG + chr8_3:68182715-68182734 None:intergenic 40.0%
!! CTTTGGAACCTCTAAGATTG+AGG + chr8_3:68182717-68182736 None:intergenic 40.0%
AGCTATCAAACCTGAACACA+GGG - chr8_3:68182985-68183004 Msa1304890:intron 40.0%
ACAATAAAGACCCTGTGTTC+AGG + chr8_3:68182998-68183017 None:intergenic 40.0%
GTGATCTTTCCATTCATGGA+TGG - chr8_3:68183088-68183107 Msa1304890:intron 40.0%
CCATCAATACCATCCATGAA+TGG + chr8_3:68183100-68183119 None:intergenic 40.0%
! CCATTCATGGATGGTATTGA+TGG - chr8_3:68183097-68183116 Msa1304890:intron 40.0%
CACAGAGAGTTAGAATTCTC+AGG + chr8_3:68183128-68183147 None:intergenic 40.0%
CTGAGAATTCTAACTCTCTG+TGG - chr8_3:68183126-68183145 Msa1304890:intron 40.0%
GAAGGACCAAAACTGAAGTT+TGG + chr8_3:68183204-68183223 None:intergenic 40.0%
!! TTTGGCTTGAATAGAACACC+CGG - chr8_3:68183364-68183383 Msa1304890:intron 40.0%
! CCAATTTCGGTAGGTTAGTT+TGG + chr8_3:68183556-68183575 None:intergenic 40.0%
CCAAACTAACCTACCGAAAT+TGG - chr8_3:68183553-68183572 Msa1304890:intron 40.0%
TAACCTACCGAAATTGGGAA+TGG - chr8_3:68183559-68183578 Msa1304890:intron 40.0%
AACCTACCGAAATTGGGAAT+GGG - chr8_3:68183560-68183579 Msa1304890:intron 40.0%
ATTCTCCCCATTCCCAATTT+CGG + chr8_3:68183569-68183588 None:intergenic 40.0%
ATCAAACCTAAGACCTTGAG+AGG - chr8_3:68183587-68183606 Msa1304890:intron 40.0%
! AGAGTATTCGTGTAACCTGT+GGG + chr8_3:68184353-68184372 None:intergenic 40.0%
!! AAGAGTATTCGTGTAACCTG+TGG + chr8_3:68184354-68184373 None:intergenic 40.0%
! CACGAATACTCTTTAGAGAC+AGG - chr8_3:68184361-68184380 Msa1304890:intron 40.0%
! AGTTAGTACTGAGCATCTGA+AGG - chr8_3:68184420-68184439 Msa1304890:intron 40.0%
GGATCTGTCTACCAATTCAT+TGG - chr8_3:68184460-68184479 Msa1304890:intron 40.0%
TAAGAAGCTCGCCAATGAAT+TGG + chr8_3:68184474-68184493 None:intergenic 40.0%
! TCTTATCCGAACTGATGATG+AGG - chr8_3:68184489-68184508 Msa1304890:intron 40.0%
ATAGAAAATCGGGTAGGCTA+AGG + chr8_3:68184542-68184561 None:intergenic 40.0%
CATGATGACATCAAAGAGTG+TGG - chr8_3:68185050-68185069 Msa1304890:intron 40.0%
!! AGTGTGGCTTTTATTTGAGC+TGG - chr8_3:68185066-68185085 Msa1304890:intron 40.0%
AATATGCTGTGCATGCTTCA+CGG - chr8_3:68185089-68185108 Msa1304890:five_prime_UTR 40.0%
CTGGGAGATTGTCGAAACTA+TGG - chr8_3:68181622-68181641 Msa1304890:CDS 45.0%
TAGTAGCAAGTGAAGCCTGA+TGG - chr8_3:68181881-68181900 Msa1304890:intron 45.0%
TTGCTTCGAATGATGCCATC+AGG + chr8_3:68181899-68181918 None:intergenic 45.0%
GCATAACAAGACCTGAGGAT+GGG + chr8_3:68182158-68182177 None:intergenic 45.0%
TGCATAACAAGACCTGAGGA+TGG + chr8_3:68182159-68182178 None:intergenic 45.0%
ATGGATTTGTAGCAGGACTG+CGG - chr8_3:68182549-68182568 Msa1304890:intron 45.0%
GATTTCACCAGCTAGGAGAA+AGG - chr8_3:68182658-68182677 Msa1304890:intron 45.0%
TATGCTACCTTTCTCCTAGC+TGG + chr8_3:68182668-68182687 None:intergenic 45.0%
TGCAAGGTCCGGATAATAAC+TGG + chr8_3:68182921-68182940 None:intergenic 45.0%
AGTTATTATCCGGACCTTGC+AGG - chr8_3:68182920-68182939 Msa1304890:intron 45.0%
ATAAAACCTCCTGCAAGGTC+CGG + chr8_3:68182932-68182951 None:intergenic 45.0%
GCTAGATAAAACCTCCTGCA+AGG + chr8_3:68182937-68182956 None:intergenic 45.0%
CAGCTATCAAACCTGAACAC+AGG - chr8_3:68182984-68183003 Msa1304890:intron 45.0%
! TTGGCTTGAATAGAACACCC+GGG - chr8_3:68183365-68183384 Msa1304890:intron 45.0%
TCAAATTGATGCAGTTCCCC+GGG + chr8_3:68183385-68183404 None:intergenic 45.0%
CTCAAATTGATGCAGTTCCC+CGG + chr8_3:68183386-68183405 None:intergenic 45.0%
ACCTACCGAAATTGGGAATG+GGG - chr8_3:68183561-68183580 Msa1304890:intron 45.0%
!! AATCACTTGGATTGGCCAAG+TGG + chr8_3:68183640-68183659 None:intergenic 45.0%
ACTTGTGTAATGCATCCCAC+AGG - chr8_3:68184335-68184354 Msa1304890:intron 45.0%
TACCATCGATGACTGTTGCA+AGG + chr8_3:68184387-68184406 None:intergenic 45.0%
CACGTACCTCATCATCAGTT+CGG + chr8_3:68184498-68184517 None:intergenic 45.0%
AATACACGTTCACCCACAAC+CGG - chr8_3:68184597-68184616 Msa1304890:intron 45.0%
! CGTGTTGGTAGAAATGTCGA+CGG - chr8_3:68184705-68184724 Msa1304890:intron 45.0%
! GTGTTGGTAGAAATGTCGAC+GGG - chr8_3:68184706-68184725 Msa1304890:intron 45.0%
ATATGCTGTGCATGCTTCAC+GGG - chr8_3:68185090-68185109 Msa1304890:five_prime_UTR 45.0%
AAGCCCTCTGTCCATTCTTC+AGG - chr8_3:68180958-68180977 Msa1304890:three_prime_UTR 50.0%
TGGATTTGTAGCAGGACTGC+GGG - chr8_3:68182550-68182569 Msa1304890:intron 50.0%
TATTATCCGGACCTTGCAGG+AGG - chr8_3:68182923-68182942 Msa1304890:intron 50.0%
TGGCTTGAATAGAACACCCG+GGG - chr8_3:68183366-68183385 Msa1304890:intron 50.0%
TCCCCATTCCCAATTTCGGT+AGG + chr8_3:68183565-68183584 None:intergenic 50.0%
TGTGCTCCTCTCAAGGTCTT+AGG + chr8_3:68183596-68183615 None:intergenic 50.0%
!! TGGCCAAGTGGTGTTGACTT+GGG + chr8_3:68183628-68183647 None:intergenic 50.0%
!! TTGGCCAAGTGGTGTTGACT+TGG + chr8_3:68183629-68183648 None:intergenic 50.0%
! GGTGGCTTGTAGCAATCGAA+TGG + chr8_3:68184229-68184248 None:intergenic 50.0%
GATGAGGTACGTGCTTGTCA+AGG - chr8_3:68184505-68184524 Msa1304890:intron 50.0%
GGTACGTGCTTGTCAAGGTT+TGG - chr8_3:68184510-68184529 Msa1304890:intron 50.0%
!! TTTCTGCATGCACCGGTTGT+GGG + chr8_3:68184612-68184631 None:intergenic 50.0%
TCACACCTTTCTGCATGCAC+CGG + chr8_3:68184619-68184638 None:intergenic 50.0%
TATGCTGTGCATGCTTCACG+GGG - chr8_3:68185091-68185110 Msa1304890:five_prime_UTR 50.0%
GAGGCTCTGCGACAAACTTA+AGG - chr8_3:68185132-68185151 Msa1304890:five_prime_UTR 50.0%
AATGTACACGACCACCGCGA+GGG + chr8_3:68180926-68180945 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr8_3:68183603-68183622 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr8_3:68183601-68183620 Msa1304890:intron 55.0%
!! GTGGTGTTGACTTGGGACCT+TGG + chr8_3:68183621-68183640 None:intergenic 55.0%
GGTCCCAAGTCAACACCACT+TGG - chr8_3:68183622-68183641 Msa1304890:intron 55.0%
GGCCTTGCAACAGTCATCGA+TGG - chr8_3:68184382-68184401 Msa1304890:intron 55.0%
!! CTTTCTGCATGCACCGGTTG+TGG + chr8_3:68184613-68184632 None:intergenic 55.0%
CACAACCGGTGCATGCAGAA+AGG - chr8_3:68184611-68184630 Msa1304890:intron 55.0%
! GGAGTTTTGCAGGCACGTGT+TGG - chr8_3:68184690-68184709 Msa1304890:intron 55.0%
CAATGTACACGACCACCGCG+AGG + chr8_3:68180927-68180946 None:intergenic 60.0%
ACGACCACCGCGAGGGTAGA+CGG + chr8_3:68180919-68180938 None:intergenic 65.0%
CGGCGGTGGAGGCAGAACAG+AGG + chr8_3:68180899-68180918 None:intergenic 70.0%
TCCACCGCCGTCTACCCTCG+CGG - chr8_3:68180909-68180928 Msa1304890:three_prime_UTR 70.0%
ACCACCGCGAGGGTAGACGG+CGG + chr8_3:68180916-68180935 None:intergenic 70.0%
GCGAGGGTAGACGGCGGTGG+AGG + chr8_3:68180910-68180929 None:intergenic 75.0%
ACCGCGAGGGTAGACGGCGG+TGG + chr8_3:68180913-68180932 None:intergenic 75.0%
ACCGCCGTCTACCCTCGCGG+TGG - chr8_3:68180912-68180931 Msa1304890:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 68180862 68185197 68180862 ID=Msa1304890;Name=Msa1304890
chr8_3 mRNA 68180862 68185197 68180862 ID=Msa1304890-mRNA-1;Parent=Msa1304890;Name=Msa1304890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=155|1|1|1|0.66|0.5|4|388|125
chr8_3 exon 68180862 68181369 68180862 ID=Msa1304890-mRNA-1:exon:21076;Parent=Msa1304890-mRNA-1
chr8_3 exon 68181549 68181702 68181549 ID=Msa1304890-mRNA-1:exon:21075;Parent=Msa1304890-mRNA-1
chr8_3 exon 68184056 68184196 68184056 ID=Msa1304890-mRNA-1:exon:21074;Parent=Msa1304890-mRNA-1
chr8_3 exon 68185080 68185197 68185080 ID=Msa1304890-mRNA-1:exon:21073;Parent=Msa1304890-mRNA-1
chr8_3 five_prime_UTR 68185080 68185197 68185080 ID=Msa1304890-mRNA-1:five_prime_utr;Parent=Msa1304890-mRNA-1
chr8_3 five_prime_UTR 68184160 68184196 68184160 ID=Msa1304890-mRNA-1:five_prime_utr;Parent=Msa1304890-mRNA-1
chr8_3 CDS 68184056 68184159 68184056 ID=Msa1304890-mRNA-1:cds;Parent=Msa1304890-mRNA-1
chr8_3 CDS 68181549 68181702 68181549 ID=Msa1304890-mRNA-1:cds;Parent=Msa1304890-mRNA-1
chr8_3 CDS 68181250 68181369 68181250 ID=Msa1304890-mRNA-1:cds;Parent=Msa1304890-mRNA-1
chr8_3 three_prime_UTR 68180862 68181249 68180862 ID=Msa1304890-mRNA-1:three_prime_utr;Parent=Msa1304890-mRNA-1
Gene Sequence

>Msa1304890

ATGGCATCATTCGAAGCAAAATCCGGTGCGTTAGTTTCTTTACAAGATTTGCGCCCATCGTCTCCTTTTTTCAAGCAAGGAACATCAGTCAGAATAATTGGAAAGTTACACGAATACTCTTTAGAGACAGGCCTTGCAACAGTCATCGATGGTAATGACATTCTAAAAGTTAGTACTGAGCATCTGAAGGACCTTAAGTTTCAAGTTGGATCTGTCTACCAATTCATTGGCGAGCTTCTTATCCGAACTGATGATGAGGGAGTTTTGCAGGCACGTGTTGGTAGAAATGTCGACGGGATTGATCTCAATCTTTATCATCAGTCCTTGCTGCTTTTGAAACAGTTTCAAGCCAACCATTTGAATAATTCGGCAACTTAA

Protein sequence

>Msa1304890

MASFEAKSGALVSLQDLRPSSPFFKQGTSVRIIGKLHEYSLETGLATVIDGNDILKVSTEHLKDLKFQVGSVYQFIGELLIRTDDEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNSAT*