AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622170 MtrunA17_Chr7g0272081 95.200 125 6 0 1 125 1 125 5.87e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622170 AT1G56260.2 49.138 116 58 1 1 115 1 116 7.93e-38 124
Msa0622170 AT1G56260.1 49.138 116 58 1 1 115 1 116 7.93e-38 124

Find 51 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTTATATGCTTCT+AGG 0.224256 4_2:+74520320 Msa0622170:three_prime_UTR
GGAACATCAGTCAGAATAAT+TGG 0.230539 4_2:+74517388 Msa0622170:CDS
AAGCCCTCTGTCCATTCTTC+AGG 0.290788 4_2:+74516368 Msa0622170:five_prime_UTR
AGCCAACCATTTGAATAATT+CGG 0.300995 4_2:+74520189 Msa0622170:CDS
ATTCATTACATTGCACAATC+AGG 0.318021 4_2:-74520569 None:intergenic
ATTCGGCAACTTAACTTTGT+AGG 0.318906 4_2:+74520206 Msa0622170:exon
TTTACAAGTTACAACCTTCA+TGG 0.334882 4_2:+74520392 Msa0622170:three_prime_UTR
GAGGCTCTGCGACAAACTTA+AGG 0.393479 4_2:+74520542 Msa0622170:three_prime_UTR
ATACTTCTATGAAAATAGTA+AGG 0.422076 4_2:-74520270 None:intergenic
GGATCTGTCTACCAATTCAT+TGG 0.425515 4_2:+74519870 Msa0622170:CDS
GACATTTAGTTGTAAATTTG+AGG 0.431238 4_2:+74520523 Msa0622170:three_prime_UTR
TAAGAAGCTCGCCAATGAAT+TGG 0.437510 4_2:-74519881 None:intergenic
CAGATCCAACTTGAAACTTA+AGG 0.441876 4_2:-74519854 None:intergenic
TTATGCTGTGCATGCTTCAC+GGG 0.454326 4_2:+74520500 Msa0622170:three_prime_UTR
TTGCTTCGAATGATGCCATC+AGG 0.454505 4_2:-74517306 None:intergenic
TGCCGAATTATTCAAATGGT+TGG 0.458705 4_2:-74520191 None:intergenic
TCCGTGAATCAAAGTTAAAA+CGG 0.459387 4_2:+74516266 None:intergenic
ATTATGCTGTGCATGCTTCA+CGG 0.470976 4_2:+74520499 Msa0622170:three_prime_UTR
AAAGAAGAAAACCTGAAGAA+TGG 0.480856 4_2:-74516379 None:intergenic
CACGAATACTCTTTAGAGAC+AGG 0.496480 4_2:+74519771 Msa0622170:CDS
AAGGACCTTAAGTTTCAAGT+TGG 0.504185 4_2:+74519849 Msa0622170:CDS
GCATCATTCGAAGCAAAATC+CGG 0.514495 4_2:+74517313 Msa0622170:CDS
TTCATTACATTGCACAATCA+GGG 0.516627 4_2:-74520568 None:intergenic
CACGTACCTCATCATCAGTT+CGG 0.519854 4_2:-74519905 None:intergenic
ACCGCGAGGGTAGACGGCGG+TGG 0.528791 4_2:-74516320 None:intergenic
AAGTTGCCGAATTATTCAAA+TGG 0.529169 4_2:-74520195 None:intergenic
GCGAGGGTAGACGGCGGTGG+AGG 0.546576 4_2:-74516317 None:intergenic
AAAATGAAATGTCACCATGA+AGG 0.555013 4_2:-74520406 None:intergenic
ACGACCACCGCGAGGGTAGA+CGG 0.565243 4_2:-74516326 None:intergenic
TTTATATGCTTCTAGGACAA+GGG 0.567964 4_2:+74520327 Msa0622170:three_prime_UTR
TAGTAGCAAGTGAAGCCTGA+TGG 0.580797 4_2:+74517291 Msa0622170:exon
GTTTATATGCTTCTAGGACA+AGG 0.581797 4_2:+74520326 Msa0622170:three_prime_UTR
TTGTAAAGAAACTAACGCAC+CGG 0.593486 4_2:-74517332 None:intergenic
AGTTAGTACTGAGCATCTGA+AGG 0.602957 4_2:+74519830 Msa0622170:CDS
TACCATCGATGACTGTTGCA+AGG 0.616671 4_2:-74519794 None:intergenic
GGCCTTGCAACAGTCATCGA+TGG 0.618120 4_2:+74519792 Msa0622170:CDS
TACTTCTATGAAAATAGTAA+GGG 0.622395 4_2:-74520269 None:intergenic
AAACCTGAAGAATGGACAGA+GGG 0.630357 4_2:-74516371 None:intergenic
AAACTGTTTCAAAAGCAGCA+AGG 0.639053 4_2:-74520164 None:intergenic
TCTTATCCGAACTGATGATG+AGG 0.648922 4_2:+74519899 Msa0622170:CDS
AATGTACACGACCACCGCGA+GGG 0.651221 4_2:-74516333 None:intergenic
CATGATGACATCAAAGAGTG+TGG 0.652971 4_2:+74520460 Msa0622170:three_prime_UTR
AAAACCTGAAGAATGGACAG+AGG 0.659411 4_2:-74516372 None:intergenic
CGTGTTGGTAGAAATGTCGA+CGG 0.665620 4_2:+74520115 Msa0622170:CDS
CGGCGGTGGAGGCAGAACAG+AGG 0.670181 4_2:-74516306 None:intergenic
GTGTTGGTAGAAATGTCGAC+GGG 0.670397 4_2:+74520116 Msa0622170:CDS
TCCACCGCCGTCTACCCTCG+CGG 0.675678 4_2:+74516319 Msa0622170:five_prime_UTR
TATGCTGTGCATGCTTCACG+GGG 0.688025 4_2:+74520501 Msa0622170:three_prime_UTR
ACCGCCGTCTACCCTCGCGG+TGG 0.702706 4_2:+74516322 Msa0622170:five_prime_UTR
CAATGTACACGACCACCGCG+AGG 0.707239 4_2:-74516334 None:intergenic
ACCACCGCGAGGGTAGACGG+CGG 0.802445 4_2:-74516323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCAAAATTAGAAT+GGG - chr4_2:74517426-74517445 None:intergenic 10.0%
!! TCATAATATAAAAACATAAA+AGG + chr4_2:74520241-74520260 Msa0622170:three_prime_UTR 10.0%
!!! TTGTTATTTATTGTTAAAGA+AGG + chr4_2:74516708-74516727 Msa0622170:intron 15.0%
!!! TGTTATTTATTGTTAAAGAA+GGG + chr4_2:74516709-74516728 Msa0622170:intron 15.0%
!! CAAATATATCAAAATTAGAA+TGG - chr4_2:74517427-74517446 None:intergenic 15.0%
!! AGAATTTATGAAAATAGATT+AGG + chr4_2:74517755-74517774 Msa0622170:intron 15.0%
!!! TATAACTTTAAAAAATCACT+TGG - chr4_2:74519063-74519082 None:intergenic 15.0%
!! AGTTATATATATAAGAGAAA+TGG + chr4_2:74519076-74519095 Msa0622170:intron 15.0%
!! AATGATTAATGAATATATCA+AGG + chr4_2:74519186-74519205 Msa0622170:intron 15.0%
!! AAATAGATAATTAGATATAG+AGG - chr4_2:74519616-74519635 None:intergenic 15.0%
!!! AATGTTTTTTGTTTTTTGTT+AGG + chr4_2:74520078-74520097 Msa0622170:intron 15.0%
!!! ATGTTTTTTGTTTTTTGTTA+GGG + chr4_2:74520079-74520098 Msa0622170:intron 15.0%
!! AAAAAGTAGAGAAATTGAAA+CGG - chr4_2:74516442-74516461 None:intergenic 20.0%
!! ATAATCAAAGTGAAAAAACA+GGG - chr4_2:74516483-74516502 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG - chr4_2:74516606-74516625 None:intergenic 20.0%
!! GTTATTTATTGTTAAAGAAG+GGG + chr4_2:74516710-74516729 Msa0622170:intron 20.0%
!!! TTTTTATAAGCTATTCTTGA+GGG + chr4_2:74516872-74516891 Msa0622170:intron 20.0%
!!! TTAAAATCTTTTATGTGATG+AGG + chr4_2:74517089-74517108 Msa0622170:intron 20.0%
!! AATGTGTAAATTCATGTTAA+TGG - chr4_2:74517157-74517176 None:intergenic 20.0%
!! ATTGATATCTTTAGTAACTT+TGG - chr4_2:74518144-74518163 None:intergenic 20.0%
!!! TCTAGTCTGTTTTAATTATA+AGG + chr4_2:74518264-74518283 Msa0622170:intron 20.0%
!! TTATAGTAATAAGAACTAGA+AGG - chr4_2:74518632-74518651 None:intergenic 20.0%
!!! AGTTTTATCAAATTCAGTTT+GGG - chr4_2:74518847-74518866 None:intergenic 20.0%
!!! TAGTTTTATCAAATTCAGTT+TGG - chr4_2:74518848-74518867 None:intergenic 20.0%
!! AAACTGAATTTGATAAAACT+AGG + chr4_2:74518847-74518866 Msa0622170:intron 20.0%
!! TTCAATATTGTGATTAATTG+TGG - chr4_2:74519239-74519258 None:intergenic 20.0%
!!! GTATATTTTAACACAAATTC+TGG + chr4_2:74519283-74519302 Msa0622170:intron 20.0%
!! ATATTTGAACACAATTTCAA+TGG + chr4_2:74519357-74519376 Msa0622170:intron 20.0%
!!! TCGAAATTTGTGTTAAATTT+TGG + chr4_2:74519576-74519595 Msa0622170:intron 20.0%
!!! CGAAATTTGTGTTAAATTTT+GGG + chr4_2:74519577-74519596 Msa0622170:intron 20.0%
!! TACTTCTATGAAAATAGTAA+GGG - chr4_2:74520272-74520291 None:intergenic 20.0%
!! ATACTTCTATGAAAATAGTA+AGG - chr4_2:74520273-74520292 None:intergenic 20.0%
!!! TTTTATTATACGCTTTCTTT+TGG + chr4_2:74520425-74520444 Msa0622170:three_prime_UTR 20.0%
! GATAATCAAAGTGAAAAAAC+AGG - chr4_2:74516484-74516503 None:intergenic 25.0%
!! GTAGTGATTTATCTTACTTT+TGG + chr4_2:74516506-74516525 Msa0622170:intron 25.0%
! ACATCAATATTGTAGTGATA+AGG - chr4_2:74516750-74516769 None:intergenic 25.0%
!! GTTTTTATAAGCTATTCTTG+AGG + chr4_2:74516871-74516890 Msa0622170:intron 25.0%
! TTTCTATAAGCTCTTTCAAA+CGG + chr4_2:74516941-74516960 Msa0622170:intron 25.0%
!! TAATTAGGGTTTGTTTGAAT+TGG - chr4_2:74517007-74517026 None:intergenic 25.0%
!! GTTATATTTTTCCAAATTGC+AGG + chr4_2:74517251-74517270 Msa0622170:intron 25.0%
!!! TTGTGACTTTTTCTTTTGTT+TGG + chr4_2:74517444-74517463 Msa0622170:intron 25.0%
! CAGAACATAATTTCACATAA+GGG - chr4_2:74517478-74517497 None:intergenic 25.0%
! ACAGAACATAATTTCACATA+AGG - chr4_2:74517479-74517498 None:intergenic 25.0%
! TGAAATTATGTTCTGTCTTT+GGG + chr4_2:74517483-74517502 Msa0622170:intron 25.0%
!!! TTTTAATGCTTGAGGTATTT+AGG + chr4_2:74517538-74517557 Msa0622170:intron 25.0%
! AATAAACTGTTTATCCAAAC+AGG - chr4_2:74517599-74517618 None:intergenic 25.0%
!!! ACTGATTATCAAGCTTTTTT+CGG - chr4_2:74517781-74517800 None:intergenic 25.0%
! TAGATAAACTCAAATAAGCT+TGG + chr4_2:74517843-74517862 Msa0622170:intron 25.0%
! AGATAAACTCAAATAAGCTT+GGG + chr4_2:74517844-74517863 Msa0622170:intron 25.0%
! GGGAACAAATATGATATTTA+CGG + chr4_2:74517980-74517999 Msa0622170:intron 25.0%
!!! AATTTTGACAAATGCTAAAC+AGG + chr4_2:74518041-74518060 Msa0622170:intron 25.0%
!! GGTAGAGAACAAATATTTTT+GGG - chr4_2:74518181-74518200 None:intergenic 25.0%
! CAAAAATATTTGTTCTCTAC+CGG + chr4_2:74518180-74518199 Msa0622170:intron 25.0%
!! TTCTTGCTAATTCATTTTGA+TGG + chr4_2:74518217-74518236 Msa0622170:intron 25.0%
! ACAGACTAGATGAAAATAAA+AGG - chr4_2:74518254-74518273 None:intergenic 25.0%
!!! AATAACTGGAATGCTTTTTA+TGG - chr4_2:74518317-74518336 None:intergenic 25.0%
!! AATCCATTTAAAATCTACAG+GGG - chr4_2:74518660-74518679 None:intergenic 25.0%
!! GAATCCATTTAAAATCTACA+GGG - chr4_2:74518661-74518680 None:intergenic 25.0%
!! TGAATCCATTTAAAATCTAC+AGG - chr4_2:74518662-74518681 None:intergenic 25.0%
! AATATCTTCAACTGAAACAA+TGG + chr4_2:74518817-74518836 Msa0622170:intron 25.0%
! ATATCTTCAACTGAAACAAT+GGG + chr4_2:74518818-74518837 Msa0622170:intron 25.0%
!! CTTTAAAAAATCACTTGGAT+TGG - chr4_2:74519058-74519077 None:intergenic 25.0%
! AAATATACACCTAAAAAACG+TGG - chr4_2:74519271-74519290 None:intergenic 25.0%
!! ATTATGATTGTGAAGTATCT+TGG + chr4_2:74519718-74519737 Msa0622170:intron 25.0%
! GACATTTAGTTGTAAATTTG+AGG + chr4_2:74520523-74520542 Msa0622170:three_prime_UTR 25.0%
AAAGAAGAAAACCTGAAGAA+TGG - chr4_2:74516382-74516401 None:intergenic 30.0%
GTACAAGAATGTGAATCATA+AGG - chr4_2:74516788-74516807 None:intergenic 30.0%
! AAGTCAAACTGTTTTCATGT+AGG + chr4_2:74516839-74516858 Msa0622170:intron 30.0%
ACAAACCCTAATTAATTGAC+TGG + chr4_2:74517013-74517032 Msa0622170:intron 30.0%
CAAACCCTAATTAATTGACT+GGG + chr4_2:74517014-74517033 Msa0622170:intron 30.0%
ATCTCCCAGTCAATTAATTA+GGG - chr4_2:74517021-74517040 None:intergenic 30.0%
AATCTCCCAGTCAATTAATT+AGG - chr4_2:74517022-74517041 None:intergenic 30.0%
CAATTTCCTTCACAAATGAA+TGG - chr4_2:74517065-74517084 None:intergenic 30.0%
! TTTTATGTGATGAGGTCATA+TGG + chr4_2:74517097-74517116 Msa0622170:intron 30.0%
! TGTTATGCTACTCAAACTTT+TGG - chr4_2:74517129-74517148 None:intergenic 30.0%
GTGAAATTATGTTCTGTCTT+TGG + chr4_2:74517482-74517501 Msa0622170:intron 30.0%
! AGTGTGATTTTTAATGCTTG+AGG + chr4_2:74517530-74517549 Msa0622170:intron 30.0%
TTATGCATAAGTGCTTATCA+TGG - chr4_2:74517646-74517665 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr4_2:74517818-74517837 None:intergenic 30.0%
! TTCTAGTAACAAAGGTTTTG+TGG + chr4_2:74517878-74517897 Msa0622170:intron 30.0%
AGACACAAAATAACTACTAC+TGG - chr4_2:74517907-74517926 None:intergenic 30.0%
!! AGTAGTTATTTTGTGTCTGT+TGG + chr4_2:74517909-74517928 Msa0622170:intron 30.0%
!! GTAGTTATTTTGTGTCTGTT+GGG + chr4_2:74517910-74517929 Msa0622170:intron 30.0%
!! TAGTTATTTTGTGTCTGTTG+GGG + chr4_2:74517911-74517930 Msa0622170:intron 30.0%
TGACAAAACCAAAAGCAAAA+TGG - chr4_2:74517940-74517959 None:intergenic 30.0%
!!! TTTTGCTTTTGGTTTTGTCA+TGG + chr4_2:74517940-74517959 Msa0622170:intron 30.0%
! CGGTAGAGAACAAATATTTT+TGG - chr4_2:74518182-74518201 None:intergenic 30.0%
AAGAAAACATTGCTATCTTC+CGG - chr4_2:74518202-74518221 None:intergenic 30.0%
!! AATTCATTTTGATGGAATGC+AGG + chr4_2:74518225-74518244 Msa0622170:intron 30.0%
! AAAGCATTCCAGTTATTATC+CGG + chr4_2:74518320-74518339 Msa0622170:intron 30.0%
TGATAGCTGAAAACTAATAC+AGG - chr4_2:74518383-74518402 None:intergenic 30.0%
! CATAGTACTGAAAATAGTTC+TGG + chr4_2:74518562-74518581 Msa0622170:intron 30.0%
! GACACTATATATTGCTGATT+TGG + chr4_2:74518756-74518775 Msa0622170:intron 30.0%
TATCTTCAACTGAAACAATG+GGG + chr4_2:74518819-74518838 Msa0622170:intron 30.0%
CTGAATTTGATAAAACTAGG+AGG + chr4_2:74518850-74518869 Msa0622170:intron 30.0%
ACATCTACTGGTAATTGAAA+CGG + chr4_2:74518896-74518915 Msa0622170:intron 30.0%
ATCTAAATTGTTGTCGAATC+TGG - chr4_2:74519126-74519145 None:intergenic 30.0%
AGATTCGACAACAATTTAGA+TGG + chr4_2:74519125-74519144 Msa0622170:intron 30.0%
GTTAACGCAATTCAAATACA+TGG + chr4_2:74519147-74519166 Msa0622170:intron 30.0%
!!! TGTCATTAACCACGTTTTTT+AGG + chr4_2:74519259-74519278 Msa0622170:intron 30.0%
ATTTGAACACCTAAAAATCG+TGG + chr4_2:74519400-74519419 Msa0622170:intron 30.0%
! CATCATTAACCACGATTTTT+AGG - chr4_2:74519412-74519431 None:intergenic 30.0%
GTTAATGATGTTCAAAATCG+TGG + chr4_2:74519422-74519441 Msa0622170:intron 30.0%
TGTGTTTAGTGAATGGTTAA+TGG + chr4_2:74519468-74519487 Msa0622170:intron 30.0%
GTGTTTAGTGAATGGTTAAT+GGG + chr4_2:74519469-74519488 Msa0622170:intron 30.0%
GATGGTTAATGAAGATAACA+AGG - chr4_2:74519503-74519522 None:intergenic 30.0%
GTATGGTTAATTACGTTCAT+TGG - chr4_2:74519525-74519544 None:intergenic 30.0%
GTTAAGACAGTTCAAATGTA+TGG - chr4_2:74519542-74519561 None:intergenic 30.0%
GTCTTCTAAATGCAATCATA+CGG - chr4_2:74519660-74519679 None:intergenic 30.0%
!! TGAGTTTGCTATAGAAAATC+GGG - chr4_2:74519962-74519981 None:intergenic 30.0%
!! GTGAGTTTGCTATAGAAAAT+CGG - chr4_2:74519963-74519982 None:intergenic 30.0%
! TTTTCTATAGCAAACTCACT+TGG + chr4_2:74519964-74519983 Msa0622170:intron 30.0%
AGCCAACCATTTGAATAATT+CGG + chr4_2:74520189-74520208 Msa0622170:CDS 30.0%
AAGTTGCCGAATTATTCAAA+TGG - chr4_2:74520198-74520217 None:intergenic 30.0%
AAGCATGTTTATATGCTTCT+AGG + chr4_2:74520320-74520339 Msa0622170:three_prime_UTR 30.0%
!! TTTATATGCTTCTAGGACAA+GGG + chr4_2:74520327-74520346 Msa0622170:three_prime_UTR 30.0%
TTTACAAGTTACAACCTTCA+TGG + chr4_2:74520392-74520411 Msa0622170:three_prime_UTR 30.0%
AAAATGAAATGTCACCATGA+AGG - chr4_2:74520409-74520428 None:intergenic 30.0%
TTCATTACATTGCACAATCA+GGG - chr4_2:74520571-74520590 None:intergenic 30.0%
ATTCATTACATTGCACAATC+AGG - chr4_2:74520572-74520591 None:intergenic 30.0%
! CATGAAGAATACAGCCTTTT+TGG + chr4_2:74516589-74516608 Msa0622170:intron 35.0%
TGAATCATAAGGTGGTTTGA+GGG - chr4_2:74516777-74516796 None:intergenic 35.0%
CAAGAATGTGAATCATAAGG+TGG - chr4_2:74516785-74516804 None:intergenic 35.0%
! ACTGTTTTCATGTAGGCTAT+AGG + chr4_2:74516846-74516865 Msa0622170:intron 35.0%
CAATCACCATTCATTTGTGA+AGG + chr4_2:74517056-74517075 Msa0622170:intron 35.0%
TTCAATTACAGCCTGCAATT+TGG - chr4_2:74517265-74517284 None:intergenic 35.0%
TTGTAAAGAAACTAACGCAC+CGG - chr4_2:74517335-74517354 None:intergenic 35.0%
GATGTTCCTTGCTTGAAAAA+AGG - chr4_2:74517376-74517395 None:intergenic 35.0%
GGAACATCAGTCAGAATAAT+TGG + chr4_2:74517388-74517407 Msa0622170:CDS 35.0%
TAAATGCATAACAAGACCTG+AGG - chr4_2:74517573-74517592 None:intergenic 35.0%
!! TCAGGTCTTGTTATGCATTT+AGG + chr4_2:74517572-74517591 Msa0622170:intron 35.0%
!! CAGGTCTTGTTATGCATTTA+GGG + chr4_2:74517573-74517592 Msa0622170:intron 35.0%
!! GCTGTTTTCATGAGCTATAT+TGG + chr4_2:74517732-74517751 Msa0622170:intron 35.0%
CAGTGAACTTCTAGTAACAA+AGG + chr4_2:74517870-74517889 Msa0622170:intron 35.0%
! TTTTGTCATGGATTTGTAGC+AGG + chr4_2:74517952-74517971 Msa0622170:intron 35.0%
AATAAACCCCTCAATCTTAG+AGG + chr4_2:74518116-74518135 Msa0622170:intron 35.0%
!! TTTGGAACCTCTAAGATTGA+GGG - chr4_2:74518126-74518145 None:intergenic 35.0%
TCATGTGATCTTTCCATTCA+TGG + chr4_2:74518494-74518513 Msa0622170:intron 35.0%
! GAATCACCAAACTTCAGTTT+TGG + chr4_2:74518605-74518624 Msa0622170:intron 35.0%
! TTGCCCCTGTAGATTTTAAA+TGG + chr4_2:74518654-74518673 Msa0622170:intron 35.0%
ATCTTCAACTGAAACAATGG+GGG + chr4_2:74518820-74518839 Msa0622170:intron 35.0%
TTGATAAAACTAGGAGGTTG+AGG + chr4_2:74518856-74518875 Msa0622170:intron 35.0%
TAACCATAGAAGACATCTAC+TGG + chr4_2:74518884-74518903 Msa0622170:intron 35.0%
TTACCAGTAGATGTCTTCTA+TGG - chr4_2:74518890-74518909 None:intergenic 35.0%
CAAACTAACCTACCGAAATT+GGG + chr4_2:74518964-74518983 Msa0622170:intron 35.0%
AAGCAACTGTGTTTAGTGAA+TGG + chr4_2:74519461-74519480 Msa0622170:intron 35.0%
GGTTAATTACGTTCATTGGA+TGG - chr4_2:74519521-74519540 None:intergenic 35.0%
TTCTAAATGCAATCATACGG+TGG - chr4_2:74519657-74519676 None:intergenic 35.0%
! AAGGACCTTAAGTTTCAAGT+TGG + chr4_2:74519849-74519868 Msa0622170:CDS 35.0%
CAGATCCAACTTGAAACTTA+AGG - chr4_2:74519857-74519876 None:intergenic 35.0%
! TTTGCTATAGAAAATCGGGT+AGG - chr4_2:74519958-74519977 None:intergenic 35.0%
! TTTTTGTTAGGGAGTTTTGC+AGG + chr4_2:74520090-74520109 Msa0622170:intron 35.0%
AAACTGTTTCAAAAGCAGCA+AGG - chr4_2:74520167-74520186 None:intergenic 35.0%
TGCCGAATTATTCAAATGGT+TGG - chr4_2:74520194-74520213 None:intergenic 35.0%
ATTCGGCAACTTAACTTTGT+AGG + chr4_2:74520206-74520225 Msa0622170:exon 35.0%
!! GTTTATATGCTTCTAGGACA+AGG + chr4_2:74520326-74520345 Msa0622170:three_prime_UTR 35.0%
!! GCTTTCTTTTGGCTACAAAT+AGG + chr4_2:74520436-74520455 Msa0622170:three_prime_UTR 35.0%
AAACCTGAAGAATGGACAGA+GGG - chr4_2:74516374-74516393 None:intergenic 40.0%
AAAACCTGAAGAATGGACAG+AGG - chr4_2:74516375-74516394 None:intergenic 40.0%
GTGAATCATAAGGTGGTTTG+AGG - chr4_2:74516778-74516797 None:intergenic 40.0%
GCATCATTCGAAGCAAAATC+CGG + chr4_2:74517313-74517332 Msa0622170:CDS 40.0%
GCTTGAAAAAAGGAGACGAT+GGG - chr4_2:74517366-74517385 None:intergenic 40.0%
TGCTTGAAAAAAGGAGACGA+TGG - chr4_2:74517367-74517386 None:intergenic 40.0%
!!! TCGTCTCCTTTTTTCAAGCA+AGG + chr4_2:74517367-74517386 Msa0622170:CDS 40.0%
!!! TTTGGGTTTTGTTGCTGATG+AGG + chr4_2:74517500-74517519 Msa0622170:intron 40.0%
ATTTAGGTAATCCCATCCTC+AGG + chr4_2:74517554-74517573 Msa0622170:intron 40.0%
! TTATGCATTTAGGGCCTGTT+TGG + chr4_2:74517582-74517601 Msa0622170:intron 40.0%
! TGGGGTTACCATTTTGCTTT+TGG + chr4_2:74517929-74517948 Msa0622170:intron 40.0%
GTAGTGTTAGTCATGCAGAT+AGG + chr4_2:74518018-74518037 Msa0622170:intron 40.0%
AGGTATAGATTTCACCAGCT+AGG + chr4_2:74518061-74518080 Msa0622170:intron 40.0%
!! TTGGAACCTCTAAGATTGAG+GGG - chr4_2:74518125-74518144 None:intergenic 40.0%
!! CTTTGGAACCTCTAAGATTG+AGG - chr4_2:74518127-74518146 None:intergenic 40.0%
AGCTATCAAACCTGAACACA+GGG + chr4_2:74518395-74518414 Msa0622170:intron 40.0%
ACAATAAAGACCCTGTGTTC+AGG - chr4_2:74518408-74518427 None:intergenic 40.0%
GTGATCTTTCCATTCATGGA+TGG + chr4_2:74518498-74518517 Msa0622170:intron 40.0%
CCATCAATACCATCCATGAA+TGG - chr4_2:74518510-74518529 None:intergenic 40.0%
! CCATTCATGGATGGTATTGA+TGG + chr4_2:74518507-74518526 Msa0622170:intron 40.0%
CACAGAGAGTTAGAATTCTC+AGG - chr4_2:74518538-74518557 None:intergenic 40.0%
CTGAGAATTCTAACTCTCTG+TGG + chr4_2:74518536-74518555 Msa0622170:intron 40.0%
GAAGGACCAAAACTGAAGTT+TGG - chr4_2:74518614-74518633 None:intergenic 40.0%
!! TTTGGCTTGAATAGAACACC+CGG + chr4_2:74518774-74518793 Msa0622170:intron 40.0%
! CCAATTTCGGTAGGTTAGTT+TGG - chr4_2:74518966-74518985 None:intergenic 40.0%
CCAAACTAACCTACCGAAAT+TGG + chr4_2:74518963-74518982 Msa0622170:intron 40.0%
TAACCTACCGAAATTGGGAA+TGG + chr4_2:74518969-74518988 Msa0622170:intron 40.0%
AACCTACCGAAATTGGGAAT+GGG + chr4_2:74518970-74518989 Msa0622170:intron 40.0%
ATTCTCCCCATTCCCAATTT+CGG - chr4_2:74518979-74518998 None:intergenic 40.0%
ATCAAACCTAAGACCTTGAG+AGG + chr4_2:74518997-74519016 Msa0622170:intron 40.0%
! AGAGTATTCGTGTAACCTGT+GGG - chr4_2:74519763-74519782 None:intergenic 40.0%
!! AAGAGTATTCGTGTAACCTG+TGG - chr4_2:74519764-74519783 None:intergenic 40.0%
! CACGAATACTCTTTAGAGAC+AGG + chr4_2:74519771-74519790 Msa0622170:CDS 40.0%
! AGTTAGTACTGAGCATCTGA+AGG + chr4_2:74519830-74519849 Msa0622170:CDS 40.0%
GGATCTGTCTACCAATTCAT+TGG + chr4_2:74519870-74519889 Msa0622170:CDS 40.0%
TAAGAAGCTCGCCAATGAAT+TGG - chr4_2:74519884-74519903 None:intergenic 40.0%
! TCTTATCCGAACTGATGATG+AGG + chr4_2:74519899-74519918 Msa0622170:CDS 40.0%
ATAGAAAATCGGGTAGGCTA+AGG - chr4_2:74519952-74519971 None:intergenic 40.0%
CATGATGACATCAAAGAGTG+TGG + chr4_2:74520460-74520479 Msa0622170:three_prime_UTR 40.0%
!! AGTGTGGCTTTTATTTGAGC+TGG + chr4_2:74520476-74520495 Msa0622170:three_prime_UTR 40.0%
ATTATGCTGTGCATGCTTCA+CGG + chr4_2:74520499-74520518 Msa0622170:three_prime_UTR 40.0%
CTGGGAGATTGTCGAAACTA+TGG + chr4_2:74517032-74517051 Msa0622170:intron 45.0%
TAGTAGCAAGTGAAGCCTGA+TGG + chr4_2:74517291-74517310 Msa0622170:exon 45.0%
TTGCTTCGAATGATGCCATC+AGG - chr4_2:74517309-74517328 None:intergenic 45.0%
GCATAACAAGACCTGAGGAT+GGG - chr4_2:74517568-74517587 None:intergenic 45.0%
TGCATAACAAGACCTGAGGA+TGG - chr4_2:74517569-74517588 None:intergenic 45.0%
ATGGATTTGTAGCAGGACTG+CGG + chr4_2:74517959-74517978 Msa0622170:intron 45.0%
GATTTCACCAGCTAGGAGAA+AGG + chr4_2:74518068-74518087 Msa0622170:intron 45.0%
TATGCTACCTTTCTCCTAGC+TGG - chr4_2:74518078-74518097 None:intergenic 45.0%
TGCAAGGTCCGGATAATAAC+TGG - chr4_2:74518331-74518350 None:intergenic 45.0%
AGTTATTATCCGGACCTTGC+AGG + chr4_2:74518330-74518349 Msa0622170:intron 45.0%
ATAAAACCTCCTGCAAGGTC+CGG - chr4_2:74518342-74518361 None:intergenic 45.0%
GCTAGATAAAACCTCCTGCA+AGG - chr4_2:74518347-74518366 None:intergenic 45.0%
CAGCTATCAAACCTGAACAC+AGG + chr4_2:74518394-74518413 Msa0622170:intron 45.0%
! TTGGCTTGAATAGAACACCC+GGG + chr4_2:74518775-74518794 Msa0622170:intron 45.0%
TCAAATTGATGCAGTTCCCC+GGG - chr4_2:74518795-74518814 None:intergenic 45.0%
CTCAAATTGATGCAGTTCCC+CGG - chr4_2:74518796-74518815 None:intergenic 45.0%
ACCTACCGAAATTGGGAATG+GGG + chr4_2:74518971-74518990 Msa0622170:intron 45.0%
!! AATCACTTGGATTGGCCAAG+TGG - chr4_2:74519050-74519069 None:intergenic 45.0%
ACTTGTGTAATGCATCCCAC+AGG + chr4_2:74519745-74519764 Msa0622170:intron 45.0%
TACCATCGATGACTGTTGCA+AGG - chr4_2:74519797-74519816 None:intergenic 45.0%
CACGTACCTCATCATCAGTT+CGG - chr4_2:74519908-74519927 None:intergenic 45.0%
AATACACGTTCACCCACAAC+CGG + chr4_2:74520007-74520026 Msa0622170:intron 45.0%
! CGTGTTGGTAGAAATGTCGA+CGG + chr4_2:74520115-74520134 Msa0622170:CDS 45.0%
! GTGTTGGTAGAAATGTCGAC+GGG + chr4_2:74520116-74520135 Msa0622170:CDS 45.0%
TTATGCTGTGCATGCTTCAC+GGG + chr4_2:74520500-74520519 Msa0622170:three_prime_UTR 45.0%
AAGCCCTCTGTCCATTCTTC+AGG + chr4_2:74516368-74516387 Msa0622170:five_prime_UTR 50.0%
TGGATTTGTAGCAGGACTGC+GGG + chr4_2:74517960-74517979 Msa0622170:intron 50.0%
TATTATCCGGACCTTGCAGG+AGG + chr4_2:74518333-74518352 Msa0622170:intron 50.0%
TGGCTTGAATAGAACACCCG+GGG + chr4_2:74518776-74518795 Msa0622170:intron 50.0%
TCCCCATTCCCAATTTCGGT+AGG - chr4_2:74518975-74518994 None:intergenic 50.0%
TGTGCTCCTCTCAAGGTCTT+AGG - chr4_2:74519006-74519025 None:intergenic 50.0%
!! TGGCCAAGTGGTGTTGACTT+GGG - chr4_2:74519038-74519057 None:intergenic 50.0%
!! TTGGCCAAGTGGTGTTGACT+TGG - chr4_2:74519039-74519058 None:intergenic 50.0%
! GGTGGCTTGTAGCAATCGAA+TGG - chr4_2:74519639-74519658 None:intergenic 50.0%
GATGAGGTACGTGCTTGTCA+AGG + chr4_2:74519915-74519934 Msa0622170:intron 50.0%
GGTACGTGCTTGTCAAGGTT+TGG + chr4_2:74519920-74519939 Msa0622170:intron 50.0%
!! TTTCTGCATGCACCGGTTGT+GGG - chr4_2:74520022-74520041 None:intergenic 50.0%
TCACACCTTTCTGCATGCAC+CGG - chr4_2:74520029-74520048 None:intergenic 50.0%
TATGCTGTGCATGCTTCACG+GGG + chr4_2:74520501-74520520 Msa0622170:three_prime_UTR 50.0%
GAGGCTCTGCGACAAACTTA+AGG + chr4_2:74520542-74520561 Msa0622170:three_prime_UTR 50.0%
AATGTACACGACCACCGCGA+GGG - chr4_2:74516336-74516355 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr4_2:74519013-74519032 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr4_2:74519011-74519030 Msa0622170:intron 55.0%
!! GTGGTGTTGACTTGGGACCT+TGG - chr4_2:74519031-74519050 None:intergenic 55.0%
GGTCCCAAGTCAACACCACT+TGG + chr4_2:74519032-74519051 Msa0622170:intron 55.0%
GGCCTTGCAACAGTCATCGA+TGG + chr4_2:74519792-74519811 Msa0622170:CDS 55.0%
!! CTTTCTGCATGCACCGGTTG+TGG - chr4_2:74520023-74520042 None:intergenic 55.0%
CACAACCGGTGCATGCAGAA+AGG + chr4_2:74520021-74520040 Msa0622170:intron 55.0%
! GGAGTTTTGCAGGCACGTGT+TGG + chr4_2:74520100-74520119 Msa0622170:CDS 55.0%
CAATGTACACGACCACCGCG+AGG - chr4_2:74516337-74516356 None:intergenic 60.0%
ACGACCACCGCGAGGGTAGA+CGG - chr4_2:74516329-74516348 None:intergenic 65.0%
CGGCGGTGGAGGCAGAACAG+AGG - chr4_2:74516309-74516328 None:intergenic 70.0%
TCCACCGCCGTCTACCCTCG+CGG + chr4_2:74516319-74516338 Msa0622170:five_prime_UTR 70.0%
ACCACCGCGAGGGTAGACGG+CGG - chr4_2:74516326-74516345 None:intergenic 70.0%
GCGAGGGTAGACGGCGGTGG+AGG - chr4_2:74516320-74516339 None:intergenic 75.0%
ACCGCGAGGGTAGACGGCGG+TGG - chr4_2:74516323-74516342 None:intergenic 75.0%
ACCGCCGTCTACCCTCGCGG+TGG + chr4_2:74516322-74516341 Msa0622170:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74516272 74520607 74516272 ID=Msa0622170;Name=Msa0622170
chr4_2 mRNA 74516272 74520607 74516272 ID=Msa0622170-mRNA-1;Parent=Msa0622170;Name=Msa0622170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=155|1|1|1|0.66|0.5|4|388|125
chr4_2 exon 74516272 74516389 74516272 ID=Msa0622170-mRNA-1:exon:22495;Parent=Msa0622170-mRNA-1
chr4_2 exon 74517273 74517413 74517273 ID=Msa0622170-mRNA-1:exon:22496;Parent=Msa0622170-mRNA-1
chr4_2 exon 74519767 74519920 74519767 ID=Msa0622170-mRNA-1:exon:22497;Parent=Msa0622170-mRNA-1
chr4_2 exon 74520100 74520607 74520100 ID=Msa0622170-mRNA-1:exon:22498;Parent=Msa0622170-mRNA-1
chr4_2 five_prime_UTR 74516272 74516389 74516272 ID=Msa0622170-mRNA-1:five_prime_utr;Parent=Msa0622170-mRNA-1
chr4_2 five_prime_UTR 74517273 74517309 74517273 ID=Msa0622170-mRNA-1:five_prime_utr;Parent=Msa0622170-mRNA-1
chr4_2 CDS 74517310 74517413 74517310 ID=Msa0622170-mRNA-1:cds;Parent=Msa0622170-mRNA-1
chr4_2 CDS 74519767 74519920 74519767 ID=Msa0622170-mRNA-1:cds;Parent=Msa0622170-mRNA-1
chr4_2 CDS 74520100 74520219 74520100 ID=Msa0622170-mRNA-1:cds;Parent=Msa0622170-mRNA-1
chr4_2 three_prime_UTR 74520220 74520607 74520220 ID=Msa0622170-mRNA-1:three_prime_utr;Parent=Msa0622170-mRNA-1
Gene Sequence

>Msa0622170

ATGGCATCATTCGAAGCAAAATCCGGTGCGTTAGTTTCTTTACAAGATTTGCGCCCATCGTCTCCTTTTTTCAAGCAAGGAACATCAGTCAGAATAATTGGAAAGTTACACGAATACTCTTTAGAGACAGGCCTTGCAACAGTCATCGATGGTAATGACATTCTAAAAGTTAGTACTGAGCATCTGAAGGACCTTAAGTTTCAAGTTGGATCTGTCTACCAATTCATTGGCGAGCTTCTTATCCGAACTGATGATGAGGGAGTTTTGCAGGCACGTGTTGGTAGAAATGTCGACGGGATTGATCTCAATCTTTATCATCAGTCCTTGCTGCTTTTGAAACAGTTTCAAGCCAACCATTTGAATAATTCGGCAACTTAA

Protein sequence

>Msa0622170

MASFEAKSGALVSLQDLRPSSPFFKQGTSVRIIGKLHEYSLETGLATVIDGNDILKVSTEHLKDLKFQVGSVYQFIGELLIRTDDEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNSAT*