AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086740 MtrunA17_Chr1g0203081 97.549 979 24 0 1 979 1 979 0.0 1978
Msa0086740 MtrunA17_Chr6g0472281 69.394 709 182 9 1 691 1 692 0.0 975
Msa0086740 MtrunA17_Chr6g0472281 55.204 221 83 4 759 979 653 857 1.85e-58 216
Msa0086740 MtrunA17_Chr3g0143921 42.730 564 281 12 124 667 139 680 3.00e-136 432
Msa0086740 MtrunA17_Chr3g0143921 45.946 74 39 1 886 958 818 891 2.29e-12 71.2
Msa0086740 MtrunA17_Chr2g0329671 39.469 603 317 15 113 696 167 740 1.60e-117 383
Msa0086740 MtrunA17_Chr2g0329671 45.745 94 50 1 884 977 865 957 1.72e-17 88.2
Msa0086740 MtrunA17_Chr4g0033791 40.228 527 291 9 124 645 147 654 1.43e-113 371
Msa0086740 MtrunA17_Chr4g0033791 45.122 82 44 1 885 966 826 906 1.67e-15 81.6
Msa0086740 MtrunA17_Chr5g0448621 35.135 370 180 9 124 478 126 450 1.36e-55 208
Msa0086740 MtrunA17_Chr5g0448621 65.657 99 27 1 564 662 607 698 1.20e-31 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086740 AT4G24020.1 54.702 989 337 23 36 979 36 958 0.0 951
Msa0086740 AT1G64530.1 60.057 706 243 15 29 704 5 701 0.0 818
Msa0086740 AT1G64530.1 57.426 101 40 2 880 979 738 836 6.39e-28 122
Msa0086740 AT4G24020.2 53.763 744 256 19 258 979 1 678 0.0 691
Msa0086740 AT1G64530.2 62.454 546 181 9 179 704 5 546 0.0 676
Msa0086740 AT1G64530.2 58.586 99 38 2 882 979 585 681 6.72e-28 121
Msa0086740 AT1G76350.2 43.894 565 277 12 120 670 103 641 1.05e-137 433
Msa0086740 AT1G76350.2 35.238 105 51 2 855 958 698 786 2.88e-12 71.2
Msa0086740 AT1G76350.1 43.894 565 277 12 120 670 103 641 1.05e-137 433
Msa0086740 AT1G76350.1 35.238 105 51 2 855 958 698 786 2.88e-12 71.2
Msa0086740 AT1G76350.4 43.894 565 277 12 120 670 103 641 1.05e-137 433
Msa0086740 AT1G76350.4 35.238 105 51 2 855 958 698 786 2.88e-12 71.2
Msa0086740 AT1G76350.3 43.894 565 277 12 120 670 103 641 1.05e-137 433
Msa0086740 AT1G76350.3 35.238 105 51 2 855 958 698 786 2.88e-12 71.2
Msa0086740 AT1G20640.1 42.124 565 299 8 120 668 101 653 1.59e-129 412
Msa0086740 AT1G20640.1 39.024 82 48 2 884 964 745 825 6.69e-11 67.0
Msa0086740 AT1G20640.3 42.124 565 299 8 120 668 101 653 1.59e-129 412
Msa0086740 AT1G20640.3 39.024 82 48 2 884 964 745 825 6.69e-11 67.0
Msa0086740 AT1G20640.2 42.124 565 299 8 120 668 101 653 1.59e-129 412
Msa0086740 AT1G20640.2 39.024 82 48 2 884 964 745 825 6.69e-11 67.0
Msa0086740 AT2G17150.1 39.799 598 292 15 124 673 124 701 3.23e-123 397
Msa0086740 AT2G17150.1 41.860 86 46 2 867 951 798 880 1.51e-13 75.5
Msa0086740 AT2G17150.6 39.799 598 292 15 124 673 124 701 3.23e-123 397
Msa0086740 AT2G17150.6 41.860 86 46 2 867 951 798 880 1.51e-13 75.5
Msa0086740 AT3G59580.2 39.548 531 287 9 124 647 106 609 2.06e-115 376
Msa0086740 AT3G59580.2 42.857 98 53 3 883 978 792 888 5.39e-16 83.6
Msa0086740 AT3G59580.3 39.548 531 287 9 124 647 106 609 2.06e-115 376
Msa0086740 AT3G59580.3 42.857 98 53 3 883 978 792 888 5.39e-16 83.6
Msa0086740 AT3G59580.1 39.548 531 287 9 124 647 106 609 2.06e-115 376
Msa0086740 AT3G59580.1 42.857 98 53 3 883 978 792 888 5.39e-16 83.6
Msa0086740 AT2G43500.3 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.3 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.9 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.9 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.6 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.6 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.1 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.1 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.10 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.10 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.11 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.11 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.7 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.7 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.8 36.661 611 348 10 47 646 81 663 3.38e-115 377
Msa0086740 AT2G43500.8 43.750 96 53 1 883 978 834 928 7.13e-19 92.8
Msa0086740 AT2G43500.5 36.058 624 347 11 47 646 81 676 4.61e-112 369
Msa0086740 AT2G43500.5 43.750 96 53 1 883 978 847 941 6.50e-19 93.2
Msa0086740 AT2G43500.4 36.058 624 347 11 47 646 81 676 4.61e-112 369
Msa0086740 AT2G43500.4 43.750 96 53 1 883 978 847 941 6.50e-19 93.2
Msa0086740 AT2G43500.2 35.737 624 349 11 47 646 81 676 1.05e-110 365
Msa0086740 AT2G43500.2 43.750 96 53 1 883 978 847 941 6.78e-19 93.2
Msa0086740 AT4G38340.2 35.985 528 265 11 124 647 43 501 8.42e-94 313
Msa0086740 AT4G38340.2 37.755 98 55 2 870 964 592 686 1.17e-14 79.0
Msa0086740 AT2G17150.2 36.750 517 269 13 124 595 124 627 2.45e-93 310
Msa0086740 AT4G38340.1 35.795 528 266 12 124 647 114 572 7.87e-93 312
Msa0086740 AT4G38340.1 37.755 98 55 2 870 964 663 757 1.30e-14 79.0
Msa0086740 AT2G17150.5 36.923 520 267 14 124 595 124 630 1.12e-92 308
Msa0086740 AT2G17150.3 36.923 520 267 14 124 595 124 630 1.12e-92 308
Msa0086740 AT4G35270.2 40.984 366 202 4 124 485 153 508 3.63e-85 295
Msa0086740 AT4G35270.2 60.345 116 39 1 560 675 635 743 5.16e-35 145
Msa0086740 AT4G35270.2 42.105 95 52 3 886 978 865 958 4.92e-15 80.5
Msa0086740 AT4G35270.1 40.984 366 202 4 124 485 153 508 3.63e-85 295
Msa0086740 AT4G35270.1 60.345 116 39 1 560 675 635 743 5.16e-35 145
Msa0086740 AT4G35270.1 42.105 95 52 3 886 978 865 958 4.92e-15 80.5
Msa0086740 AT4G35270.3 40.984 366 202 4 124 485 153 508 3.63e-85 295
Msa0086740 AT4G35270.3 60.345 116 39 1 560 675 635 743 5.16e-35 145
Msa0086740 AT4G35270.3 42.105 95 52 3 886 978 865 958 4.92e-15 80.5
Msa0086740 AT4G35270.4 40.984 366 202 4 124 485 153 508 3.63e-85 295
Msa0086740 AT4G35270.4 60.345 116 39 1 560 675 635 743 5.16e-35 145
Msa0086740 AT4G35270.4 42.105 95 52 3 886 978 865 958 4.92e-15 80.5
Msa0086740 AT2G17150.4 37.716 464 222 14 257 673 3 446 7.38e-77 265
Msa0086740 AT2G17150.4 41.860 86 46 2 867 951 543 625 1.32e-13 75.5

Find 241 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCACCAATAGAAAATT+TGG 0.126044 1_2:+67490257 Msa0086740:CDS
AACCTCAAGTTTCAATCTTT+TGG 0.135797 1_2:-67493466 None:intergenic
ATATCGTAGATGCTCATTTA+TGG 0.198226 1_2:+67491486 Msa0086740:CDS
GTTCATTATGCTCTCATGTT+TGG 0.230421 1_2:+67491638 Msa0086740:CDS
TTCAGTAGCTGAGGCCATTT+TGG 0.234654 1_2:+67493227 Msa0086740:CDS
GAGAAGATATCATAAGGTTT+AGG 0.254091 1_2:+67493400 Msa0086740:CDS
CTGTTTCATTGTTGACAATA+TGG 0.260307 1_2:-67491783 None:intergenic
ACCCGATGCCTCACCAAATA+TGG 0.272048 1_2:+67491946 Msa0086740:CDS
ATTCATATGATAAAATAGTT+TGG 0.286584 1_2:+67493805 Msa0086740:three_prime_UTR
CTTGAGAAAGAAGTGATTAA+TGG 0.295335 1_2:+67492865 Msa0086740:CDS
TTCATTATGCTCTCATGTTT+GGG 0.297926 1_2:+67491639 Msa0086740:CDS
CTGTAGGCATAGGAGTGTTT+TGG 0.304108 1_2:+67491373 Msa0086740:CDS
TTTAGGTTCTTGTAATCTTT+AGG 0.307947 1_2:+67493705 Msa0086740:three_prime_UTR
AGAAGAACATGGTTGTTCTA+TGG 0.308360 1_2:+67489321 Msa0086740:CDS
CAGTTTGTTATCTATTGTTT+AGG 0.309599 1_2:+67493688 Msa0086740:three_prime_UTR
AATGAAGACTGTAACTATTA+AGG 0.320892 1_2:+67493368 Msa0086740:CDS
TGGTAAAGGCGTGACTATTC+AGG 0.321308 1_2:+67492885 Msa0086740:CDS
AAGTTGTTACCACAAGCTTC+TGG 0.322668 1_2:-67493261 None:intergenic
TATCGTAGATGCTCATTTAT+GGG 0.324285 1_2:+67491487 Msa0086740:CDS
GAATGTATTGGCTCAGGTTT+GGG 0.327805 1_2:+67490347 Msa0086740:CDS
CATTGCTGGCTGGACTTATT+CGG 0.328442 1_2:-67492718 None:intergenic
CAGATGAAAGAGAATGAATT+TGG 0.336078 1_2:+67492769 Msa0086740:CDS
GGAAGCTCCTGTGAGAGTTC+AGG 0.336945 1_2:+67493639 Msa0086740:CDS
ATGATATCAATGCATTGTTT+AGG 0.337373 1_2:-67493309 None:intergenic
GCCTACAGGGAACCCATGTT+TGG 0.338019 1_2:-67491358 None:intergenic
AAGCAACATAATCCGGGTTT+TGG 0.339808 1_2:+67493593 Msa0086740:CDS
TTTCTCAAGGTTCTGTTTGT+GGG 0.342639 1_2:-67489238 None:intergenic
ATCAACCTTCTTCTCCTCTA+TGG 0.342830 1_2:+67489437 Msa0086740:CDS
GATTTAATAGATTGAGCAAT+AGG 0.344298 1_2:-67491914 None:intergenic
CACAACATGTTGTTCATTGT+TGG 0.348163 1_2:-67493043 None:intergenic
AGCATGTGATGCAGACCTTC+AGG 0.350853 1_2:+67493539 Msa0086740:CDS
GTTTGTTTCTGATACTTTAG+AGG 0.353332 1_2:-67492794 None:intergenic
TTTGGATTTCATCCAACATA+TGG 0.354659 1_2:-67493898 None:intergenic
GGCGTGACTATTCAGGAAAT+TGG 0.356009 1_2:+67492892 Msa0086740:CDS
TTTATGGTTGGAATTTCAAT+TGG 0.358415 1_2:-67493003 None:intergenic
AAATTGGAAAGGACCGAAAA+AGG 0.359121 1_2:+67492908 Msa0086740:CDS
GCTTGTGGTAACAACTTTCC+AGG 0.361722 1_2:+67493267 Msa0086740:CDS
AGAAGATATCATAAGGTTTA+GGG 0.363466 1_2:+67493401 Msa0086740:CDS
TATTGCTTAACGAGCATTGC+TGG 0.371298 1_2:-67492732 None:intergenic
CAGATACGCTTCATTGTAGT+AGG 0.378516 1_2:-67492520 None:intergenic
TTTAGAAACACCATGGCCTT+TGG 0.382797 1_2:+67489357 Msa0086740:CDS
TGAATGTATTGGCTCAGGTT+TGG 0.382919 1_2:+67490346 Msa0086740:CDS
GCAAAGGAAATGAAAACAAA+TGG 0.386296 1_2:-67489167 None:intergenic
TGGAGCCAGATCCTCCAAAA+TGG 0.387883 1_2:-67493241 None:intergenic
TAACACGTTTGAGCTTAGAT+AGG 0.389963 1_2:-67492600 None:intergenic
CTCCATATTTGGTGAGGCAT+CGG 0.392508 1_2:-67491948 None:intergenic
CGGTATGTACTTACAACTTC+AGG 0.393209 1_2:+67490390 Msa0086740:CDS
CTTGTAATCTTTAGGAAGAT+AGG 0.394367 1_2:+67493713 Msa0086740:three_prime_UTR
CAACATGGTCAAGGTGTTGC+GGG 0.395005 1_2:+67491542 Msa0086740:CDS
CCGGAGGAAGCAACATAATC+CGG 0.406793 1_2:+67493586 Msa0086740:CDS
TTATGGTTGGAATTTCAATT+GGG 0.410388 1_2:-67493002 None:intergenic
TTAGAATAGTACAGAACATT+GGG 0.411506 1_2:-67490561 None:intergenic
ATGCATACATAGTAGTATAA+TGG 0.413449 1_2:-67489132 None:intergenic
CTGGACTTATTCGGAGTAGA+AGG 0.413845 1_2:-67492709 None:intergenic
CTTTCCAGGTTCATCACATC+TGG 0.413983 1_2:+67493281 Msa0086740:CDS
GATGGAACTCTAGGACTTCC+TGG 0.418289 1_2:+67490504 Msa0086740:CDS
AAATATGGAGGAGGAGGAGG+AGG 0.419910 1_2:+67491961 Msa0086740:CDS
TGGTCAAGGTGTTGCGGGGA+GGG 0.420611 1_2:+67491547 Msa0086740:CDS
TGACATGGGATTGGTGATAA+AGG 0.425035 1_2:-67489389 None:intergenic
CCGGATTATGTTGCTTCCTC+CGG 0.426310 1_2:-67493586 None:intergenic
TAAATGAGCATCTACGATAT+AGG 0.426423 1_2:-67491483 None:intergenic
TTTGGTGAGGCATCGGGTCT+AGG 0.427870 1_2:-67491941 None:intergenic
GTTGATCCGATGTCTACCTT+AGG 0.428534 1_2:+67492034 Msa0086740:CDS
CCTTGCAGGCAGTAAATTTG+AGG 0.428965 1_2:+67490926 Msa0086740:intron
TCCATATTTGGTGAGGCATC+GGG 0.432185 1_2:-67491947 None:intergenic
GAAGCTCCTGTGAGAGTTCA+GGG 0.444633 1_2:+67493640 Msa0086740:CDS
CATGAACAGAAGACGCTGTT+GGG 0.447455 1_2:+67491758 Msa0086740:CDS
GGATGGATATTGTGTAATCA+AGG 0.447561 1_2:+67490278 Msa0086740:CDS
GCAGAACTTCAAGAGCCGTT+TGG 0.448769 1_2:+67493150 Msa0086740:CDS
TCAGGAAATGAACTAACAAT+TGG 0.451708 1_2:-67492685 None:intergenic
CCACAGAAAACATGTACATC+AGG 0.453576 1_2:-67490470 None:intergenic
CAGAGTCTTAACATTGCTGC+TGG 0.455084 1_2:+67491812 Msa0086740:CDS
TTGTTGTCGTCTTTCTCCAC+CGG 0.456133 1_2:-67490216 None:intergenic
AAGTTCTGCTATCACATTGT+CGG 0.456387 1_2:-67493136 None:intergenic
AGGGCGTCAAAATGCATTAT+CGG 0.458489 1_2:+67491283 Msa0086740:CDS
ACCAAATATGGAGGAGGAGG+AGG 0.458759 1_2:+67491958 Msa0086740:CDS
TTGAGGGGATCGCCAGAGTC+GGG 0.458933 1_2:+67493066 Msa0086740:CDS
AGTTCTGCTATCACATTGTC+GGG 0.459703 1_2:-67493135 None:intergenic
CTGCAAGACAGATTACCCTT+TGG 0.463297 1_2:+67491616 Msa0086740:CDS
CACATTTGATATCAAGTACA+TGG 0.464870 1_2:+67493491 Msa0086740:CDS
GGAGGAGGAGGGAGTACCAC+AGG 0.466897 1_2:+67491973 Msa0086740:CDS
CATGACATAACATCAAATCT+TGG 0.469302 1_2:+67493618 Msa0086740:CDS
AGCAATGCTCGTTAAGCAAT+AGG 0.471004 1_2:+67492734 Msa0086740:CDS
GCGTTTGATTTGAATTCTCT+TGG 0.473199 1_2:+67492649 Msa0086740:CDS
CTCTTTGAACTGTGGCATTG+TGG 0.474442 1_2:+67493425 Msa0086740:CDS
TTAAATCAGATTTGCAATGA+AGG 0.476823 1_2:+67491263 Msa0086740:intron
CACCTGTGAGGAATGGTAAT+CGG 0.477678 1_2:+67490370 Msa0086740:CDS
CAAACGCTCCTTCAGCGCCT+TGG 0.478043 1_2:-67492633 None:intergenic
ATTATTGAAGCAACTGATGA+AGG 0.480520 1_2:+67491866 Msa0086740:CDS
CCTTCGTTGCAGTCATGTAT+TGG 0.482068 1_2:+67490657 Msa0086740:CDS
GGAGAGAACGATGGAACTCT+AGG 0.486383 1_2:+67490495 Msa0086740:CDS
GTAATCTGTCTTGCAGAACT+TGG 0.486621 1_2:-67491609 None:intergenic
GGTGTTGAACTCGAGGAAAA+TGG 0.487027 1_2:+67491833 Msa0086740:CDS
AGAACATTGGGAGACCATTC+TGG 0.493005 1_2:-67490549 None:intergenic
TAAATCAGATTTGCAATGAA+GGG 0.493978 1_2:+67491264 Msa0086740:intron
GTCCTTGATCCACATAGTAA+TGG 0.494034 1_2:+67490423 Msa0086740:CDS
TTCAGCAGAAACTACCAGAA+TGG 0.494743 1_2:+67490535 Msa0086740:CDS
ATTAGAATAGTACAGAACAT+TGG 0.496307 1_2:-67490562 None:intergenic
CCTACAGGGAACCCATGTTT+GGG 0.498512 1_2:-67491357 None:intergenic
TGTAATGTTGAGCATGATCT+CGG 0.498840 1_2:-67490599 None:intergenic
TTTCCACGTTTCCTCTCTGA+GGG 0.500087 1_2:-67492076 None:intergenic
TGAACTGAATGTATTGGCTC+AGG 0.500170 1_2:+67490341 Msa0086740:CDS
ACATGGACGATGATAATGAA+TGG 0.500704 1_2:+67493508 Msa0086740:CDS
CATATAGAGAAGATATCATA+AGG 0.502450 1_2:+67493394 Msa0086740:CDS
CCACCAATAGAAAATTTGGA+TGG 0.502580 1_2:+67490261 Msa0086740:CDS
TTGAGCAATAGGAATAGATT+CGG 0.502794 1_2:-67491903 None:intergenic
AAAGTCCATAGAGGAGAAGA+AGG 0.508706 1_2:-67489442 None:intergenic
TGGCATGAACCATGAGAAGT+AGG 0.511685 1_2:-67492970 None:intergenic
AAAGAAGTGATTAATGGTAA+AGG 0.511717 1_2:+67492871 Msa0086740:CDS
CAAAGGAAATGAAAACAAAT+GGG 0.512380 1_2:-67489166 None:intergenic
TTGATCCGATGTCTACCTTA+GGG 0.513112 1_2:+67492035 Msa0086740:CDS
TTACAACGTTCGTGGAACCT+TGG 0.514560 1_2:+67490617 Msa0086740:CDS
TCTTTCATCTGAGGCTCTGA+CGG 0.515877 1_2:-67492757 None:intergenic
TGCAACGAAGGTTCAAATAC+AGG 0.517092 1_2:-67490645 None:intergenic
CAAAACACTCCTATGCCTAC+AGG 0.518113 1_2:-67491372 None:intergenic
CTATCACATTGTCGGGCATA+CGG 0.518485 1_2:-67493128 None:intergenic
GCTTAACGAGCATTGCTGGC+TGG 0.519778 1_2:-67492728 None:intergenic
TCGGGCATACGGTGAGAAGT+TGG 0.519816 1_2:-67493117 None:intergenic
ATTTACCTCTAGCCCAAACA+TGG 0.520347 1_2:+67491345 Msa0086740:CDS
GGAACCCATGTTTGGGCTAG+AGG 0.520691 1_2:-67491350 None:intergenic
AACAAACATACAGATTGTAA+TGG 0.521216 1_2:+67492810 Msa0086740:CDS
GAATTGTTCAGTCCATATGT+TGG 0.521476 1_2:+67493886 Msa0086740:three_prime_UTR
GTGTAGAACAATTTCAGCAA+AGG 0.522430 1_2:-67489183 None:intergenic
GATGCTGCAAAGAGCCTTGG+CGG 0.522654 1_2:+67492157 Msa0086740:CDS
AATTCATTCTCTTTCATCTG+AGG 0.523018 1_2:-67492766 None:intergenic
CAGGATCCATCAGAGGTTCA+TGG 0.523226 1_2:+67491992 Msa0086740:CDS
ATGTATGTTTCAAGATCATC+CGG 0.526490 1_2:+67493567 Msa0086740:CDS
GCTCAACATTACAACGTTCG+TGG 0.526984 1_2:+67490609 Msa0086740:CDS
CTATGTGGATCAAGGACAAA+GGG 0.527734 1_2:-67490417 None:intergenic
GTCGGCTGCATTCCCGACTC+TGG 0.528364 1_2:-67493078 None:intergenic
ATGTTGAGCATGATCTCGGC+GGG 0.529020 1_2:-67490595 None:intergenic
AAAGATGCTGCAAAGAGCCT+TGG 0.531341 1_2:+67492154 Msa0086740:CDS
CATGGACGATGATAATGAAT+GGG 0.531492 1_2:+67493509 Msa0086740:CDS
TCATGAACAGAAGACGCTGT+TGG 0.531663 1_2:+67491757 Msa0086740:CDS
CGCTTCGTTACTTCAAAGAG+TGG 0.532079 1_2:+67490316 Msa0086740:CDS
GATTCAAAAGTGATAAAGCT+TGG 0.532650 1_2:-67489212 None:intergenic
AAAAGATTGAAACTTGAGGT+TGG 0.535106 1_2:+67493468 Msa0086740:CDS
ATATCAATGCATTGTTTAGG+AGG 0.537877 1_2:-67493306 None:intergenic
GAATCTGTCCAAGGCGCTGA+AGG 0.539465 1_2:+67492625 Msa0086740:CDS
TTCCAAAAGATTGAAACTTG+AGG 0.540955 1_2:+67493464 Msa0086740:CDS
AGCGTATCTGCAGGCAGCAT+GGG 0.541320 1_2:+67492533 Msa0086740:CDS
CCAATACATGACTGCAACGA+AGG 0.542039 1_2:-67490657 None:intergenic
GTCCATTACTATGTGGATCA+AGG 0.542097 1_2:-67490425 None:intergenic
CATGGGTTCCCTGTAGGCAT+AGG 0.542933 1_2:+67491363 Msa0086740:CDS
GAGGTTCATGGTGAAAATGT+AGG 0.543377 1_2:+67492004 Msa0086740:CDS
CTCACCAAATATGGAGGAGG+AGG 0.544347 1_2:+67491955 Msa0086740:CDS
TAAAAGAAACTCAACCTCTA+GGG 0.545210 1_2:-67490748 None:intergenic
AACACGTTTGAGCTTAGATA+GGG 0.545296 1_2:-67492599 None:intergenic
ATCGTAGATGCTCATTTATG+GGG 0.545393 1_2:+67491488 Msa0086740:CDS
CTACAATGAAGCGTATCTGC+AGG 0.545803 1_2:+67492524 Msa0086740:CDS
GAACTTCAAGAGCCGTTTGG+AGG 0.546170 1_2:+67493153 Msa0086740:CDS
GTTTGGAGGATTGCTAATAG+AGG 0.548683 1_2:+67493167 Msa0086740:CDS
GTGGACTGAACTGAATGTAT+TGG 0.548852 1_2:+67490335 Msa0086740:CDS
GGAGAGTTTAAAGCATTAGT+CGG 0.550784 1_2:-67493096 None:intergenic
ACAACATGGTCAAGGTGTTG+CGG 0.552963 1_2:+67491541 Msa0086740:CDS
GTAATGGAAAATCAATTGCT+AGG 0.555652 1_2:+67492826 Msa0086740:CDS
AAATTCAATAACTGAGAAGC+CGG 0.559695 1_2:+67490197 Msa0086740:CDS
TCTATTAGCAATCCTCCAAA+CGG 0.561122 1_2:-67493165 None:intergenic
AAGCGTATCTGCAGGCAGCA+TGG 0.561590 1_2:+67492532 Msa0086740:CDS
CTCCTCCTCCATATTTGGTG+AGG 0.561991 1_2:-67491954 None:intergenic
AGCACAAACCCTACTTCTCA+TGG 0.568994 1_2:+67492961 Msa0086740:CDS
TGAACAACATGTTGTGTTGA+GGG 0.569993 1_2:+67493050 Msa0086740:CDS
ACATGTTGTTCATTGTTGGA+TGG 0.570109 1_2:-67493039 None:intergenic
TTATTCGGAGTAGAAGGCTC+AGG 0.570221 1_2:-67492703 None:intergenic
GGAGCCAGATGTGATGAACC+TGG 0.570260 1_2:-67493285 None:intergenic
TCTATTGGTGGCAAAAGGGG+TGG 0.571210 1_2:-67490249 None:intergenic
ATGGTCAAGGTGTTGCGGGG+AGG 0.571632 1_2:+67491546 Msa0086740:CDS
CGGAGGAAGCAACATAATCC+GGG 0.572590 1_2:+67493587 Msa0086740:CDS
TTCAAATACAGGCAAAGCCA+AGG 0.574356 1_2:-67490634 None:intergenic
ATGAGAGCATAATGAACCAA+AGG 0.574665 1_2:-67491632 None:intergenic
CCCAAACATGGGTTCCCTGT+AGG 0.575392 1_2:+67491357 Msa0086740:CDS
AAAATACCTGAGTGAATGGA+TGG 0.576234 1_2:-67490966 None:intergenic
TCACTCCCCTGAACTCTCAC+AGG 0.578779 1_2:-67493646 None:intergenic
ACCTTGTTAATCTTTCGAGA+TGG 0.579070 1_2:-67492568 None:intergenic
AAAATGGCCTCAGCTACTGA+AGG 0.579468 1_2:-67493225 None:intergenic
TTATGTCATGCACCAAAACC+CGG 0.579981 1_2:-67493605 None:intergenic
TGAGAGCATAATGAACCAAA+GGG 0.580200 1_2:-67491631 None:intergenic
GTTGAGGGGATCGCCAGAGT+CGG 0.581271 1_2:+67493065 Msa0086740:CDS
TTTGGACCATCCATTCACTC+AGG 0.581838 1_2:+67490960 Msa0086740:CDS
CTCAGGTTTGGGCACCTGTG+AGG 0.583880 1_2:+67490358 Msa0086740:CDS
AAACATACATGCACTCCTGA+AGG 0.585860 1_2:-67493554 None:intergenic
TGCCTCACCAAATATGGAGG+AGG 0.587748 1_2:+67491952 Msa0086740:CDS
GTTTGGGCACCTGTGAGGAA+TGG 0.588324 1_2:+67490363 Msa0086740:CDS
GACATGTGATCCAAAGGCCA+TGG 0.591421 1_2:-67489367 None:intergenic
AAAACACTCCTATGCCTACA+GGG 0.592526 1_2:-67491371 None:intergenic
ACTTCTCATGGTTCATGCCA+CGG 0.596610 1_2:+67492973 Msa0086740:CDS
AAAATCAATTGCTAGGAGGA+AGG 0.596853 1_2:+67492833 Msa0086740:CDS
TATGGTTGGAATTTCAATTG+GGG 0.600606 1_2:-67493001 None:intergenic
TTATTCCCTAAGGTAGACAT+CGG 0.604395 1_2:-67492040 None:intergenic
TGCTGCTGGTGTTGAACTCG+AGG 0.610461 1_2:+67491826 Msa0086740:CDS
CGTGTTATTGAATCTGTCCA+AGG 0.611341 1_2:+67492616 Msa0086740:CDS
GTTTGAGCTTAGATAGGGAA+CGG 0.611978 1_2:-67492594 None:intergenic
GGCAGCATGGGATATCTCGT+TGG 0.612803 1_2:+67492545 Msa0086740:CDS
TTTAGGGTCTCTTTGAACTG+TGG 0.613295 1_2:+67493417 Msa0086740:CDS
TCATGAAATTCAGTAATCCC+AGG 0.614579 1_2:-67491740 None:intergenic
ATGGTTGGAATTTCAATTGG+GGG 0.615940 1_2:-67493000 None:intergenic
CACAGAAAACATGTACATCA+GGG 0.616371 1_2:-67490469 None:intergenic
ATAAAGGACATGTGATCCAA+AGG 0.617226 1_2:-67489373 None:intergenic
GACTATTCAGGAAATTGGAA+AGG 0.619669 1_2:+67492897 Msa0086740:CDS
ATCTAGATTTAGAAACACCA+TGG 0.622079 1_2:+67489350 Msa0086740:CDS
CCATCAGTAAAAGTCCATAG+AGG 0.625976 1_2:-67489451 None:intergenic
AGAGTATGAACGTACCGCCA+AGG 0.629334 1_2:-67492171 None:intergenic
TACCGATTACCATTCCTCAC+AGG 0.629926 1_2:-67490372 None:intergenic
ACTATGTGGATCAAGGACAA+AGG 0.631383 1_2:-67490418 None:intergenic
AAAGATTAACTATGCTCCTG+AGG 0.633444 1_2:+67490707 Msa0086740:CDS
TTTGTGCCCTTCAGTAGCTG+AGG 0.634116 1_2:+67493218 Msa0086740:CDS
TTCAATAACTGAGAAGCCGG+TGG 0.635214 1_2:+67490200 Msa0086740:CDS
GGCATGAACCATGAGAAGTA+GGG 0.635585 1_2:-67492969 None:intergenic
ACATACAAGAGAAGATCTTG+TGG 0.635928 1_2:-67489513 None:intergenic
AGATACGCTTCATTGTAGTA+GGG 0.641314 1_2:-67492519 None:intergenic
AGTGTGCATGTCTACAACTG+AGG 0.643299 1_2:+67491454 Msa0086740:CDS
TGATTGAGTCCATTACTATG+TGG 0.646033 1_2:-67490432 None:intergenic
TCATTGTTGGATGGAATGAA+CGG 0.648544 1_2:-67493030 None:intergenic
CGATGCCTCACCAAATATGG+AGG 0.650921 1_2:+67491949 Msa0086740:CDS
AAAAGGAATAGAACTAGGAG+TGG 0.652567 1_2:+67492925 Msa0086740:CDS
TTTACCTCTAGCCCAAACAT+GGG 0.653751 1_2:+67491346 Msa0086740:CDS
ATGAACAACATGTTGTGTTG+AGG 0.654614 1_2:+67493049 Msa0086740:CDS
TGGACTCAATCAGTATAGAA+CGG 0.656345 1_2:+67490443 Msa0086740:CDS
AAATGGCCTCAGCTACTGAA+GGG 0.658026 1_2:-67493224 None:intergenic
GGTGAGGCATCGGGTCTAGG+TGG 0.659977 1_2:-67491938 None:intergenic
ATGGAAAATCAATTGCTAGG+AGG 0.664194 1_2:+67492829 Msa0086740:CDS
AAACCCTCAGAGAGGAAACG+TGG 0.667434 1_2:+67492073 Msa0086740:CDS
GTGCATGTCTACAACTGAGG+CGG 0.669875 1_2:+67491457 Msa0086740:CDS
AACATGGTCAAGGTGTTGCG+GGG 0.672343 1_2:+67491543 Msa0086740:CDS
GTCGAACATCACTTACAACA+TGG 0.677843 1_2:+67491527 Msa0086740:CDS
GATCTTAGAGATATTGACAG+TGG 0.683127 1_2:+67491307 Msa0086740:CDS
AAAACATCATTAGAAGAACA+TGG 0.686020 1_2:+67489310 Msa0086740:CDS
GCCATCTCGAAAGATTAACA+AGG 0.686233 1_2:+67492567 Msa0086740:CDS
GATCTGGCTCCAGAAGCTTG+TGG 0.687276 1_2:+67493252 Msa0086740:CDS
AATGTTGAGCATGATCTCGG+CGG 0.687474 1_2:-67490596 None:intergenic
CATCACTTACAACATGGTCA+AGG 0.693887 1_2:+67491533 Msa0086740:CDS
TCTGTGGATGGAGAGAACGA+TGG 0.695263 1_2:+67490486 Msa0086740:CDS
AGTACCACAGGATCCATCAG+AGG 0.699060 1_2:+67491985 Msa0086740:CDS
ACATAAAGAAACCCTCAGAG+AGG 0.705928 1_2:+67492065 Msa0086740:CDS
TGAACCTCTGATGGATCCTG+TGG 0.708138 1_2:-67491989 None:intergenic
AAGCTCCTGTGAGAGTTCAG+GGG 0.712104 1_2:+67493641 Msa0086740:CDS
GGATTGCTAATAGAGGACGC+TGG 0.717922 1_2:+67493174 Msa0086740:CDS
TGTTGAGCATGATCTCGGCG+GGG 0.718991 1_2:-67490594 None:intergenic
TATGTTTCAAGATCATCCGG+AGG 0.731584 1_2:+67493570 Msa0086740:CDS
GAACAACATGTTGTGTTGAG+GGG 0.732713 1_2:+67493051 Msa0086740:CDS
TGAAATTCAGTAATCCCAGG+AGG 0.744471 1_2:-67491737 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAGAGTTTAA+TGG + chr1_2:67490985-67491004 Msa0086740:intron 10.0%
!! GAATTATAAAATGTTAATAT+TGG - chr1_2:67492258-67492277 None:intergenic 10.0%
!! ATAAACTCATTATACATTAA+GGG - chr1_2:67489709-67489728 None:intergenic 15.0%
!! TATAAACTCATTATACATTA+AGG - chr1_2:67489710-67489729 None:intergenic 15.0%
!!! ATGATTTTTGAGTATTTATA+AGG + chr1_2:67490007-67490026 Msa0086740:intron 15.0%
!!! AACTGCATTTTAAAAATAAT+TGG + chr1_2:67491087-67491106 Msa0086740:intron 15.0%
!! TAAAAATAATTGGAAAATAC+TGG + chr1_2:67491097-67491116 Msa0086740:intron 15.0%
!!! GGTAAAAACATTATTAATTT+TGG + chr1_2:67493734-67493753 Msa0086740:three_prime_UTR 15.0%
!! ATTCATATGATAAAATAGTT+TGG + chr1_2:67493805-67493824 Msa0086740:three_prime_UTR 15.0%
!! ATAAGAAAACCATAAAACTT+AGG - chr1_2:67490788-67490807 None:intergenic 20.0%
!!! TTTTATGGTTTTCTTATGTT+TGG + chr1_2:67490791-67490810 Msa0086740:intron 20.0%
!!! ATTTTATACCAAGTTTTCAA+TGG + chr1_2:67490845-67490864 Msa0086740:intron 20.0%
!!! TTATTTTTAGAGTTTAATGG+AGG + chr1_2:67490988-67491007 Msa0086740:intron 20.0%
!!! TTTAAAATGCAGTTACAAAT+AGG - chr1_2:67491081-67491100 None:intergenic 20.0%
!! ATACATGATAAAAACAAATC+AGG - chr1_2:67491154-67491173 None:intergenic 20.0%
! ATGCATACATAGTAGTATAA+TGG - chr1_2:67489135-67489154 None:intergenic 25.0%
! CAAAGGAAATGAAAACAAAT+GGG - chr1_2:67489169-67489188 None:intergenic 25.0%
!!! TTCTGACATTTTTTTTCTCA+AGG - chr1_2:67489254-67489273 None:intergenic 25.0%
!!! TCTAATGATGTTTTTGTCTT+GGG - chr1_2:67489304-67489323 None:intergenic 25.0%
!!! TTCTAATGATGTTTTTGTCT+TGG - chr1_2:67489305-67489324 None:intergenic 25.0%
! AAAACATCATTAGAAGAACA+TGG + chr1_2:67489310-67489329 Msa0086740:CDS 25.0%
! GAGATGTTTGAAAACAAAAA+AGG - chr1_2:67489415-67489434 None:intergenic 25.0%
! CAACATTCACAAGTAAAATT+AGG - chr1_2:67489737-67489756 None:intergenic 25.0%
!! CTAATTTTACTTGTGAATGT+TGG + chr1_2:67489735-67489754 Msa0086740:intron 25.0%
! TAATCTTCAAATACTGTAGT+AGG - chr1_2:67489809-67489828 None:intergenic 25.0%
!! TATCCATCCAAATTTTCTAT+TGG - chr1_2:67490267-67490286 None:intergenic 25.0%
! TTAGAATAGTACAGAACATT+GGG - chr1_2:67490564-67490583 None:intergenic 25.0%
! ATTAGAATAGTACAGAACAT+TGG - chr1_2:67490565-67490584 None:intergenic 25.0%
! AATAAAAATACCTGAGTGAA+TGG - chr1_2:67490973-67490992 None:intergenic 25.0%
! TTATCTAGATATAACAGACT+GGG - chr1_2:67491184-67491203 None:intergenic 25.0%
! ATTATCTAGATATAACAGAC+TGG - chr1_2:67491185-67491204 None:intergenic 25.0%
! TTAAATCAGATTTGCAATGA+AGG + chr1_2:67491263-67491282 Msa0086740:intron 25.0%
! TAAATCAGATTTGCAATGAA+GGG + chr1_2:67491264-67491283 Msa0086740:intron 25.0%
! GATTTAATAGATTGAGCAAT+AGG - chr1_2:67491917-67491936 None:intergenic 25.0%
!!! CTTTATGTTTTTATTCCCTA+AGG - chr1_2:67492053-67492072 None:intergenic 25.0%
! AACAAACATACAGATTGTAA+TGG + chr1_2:67492810-67492829 Msa0086740:CDS 25.0%
! AAAGAAGTGATTAATGGTAA+AGG + chr1_2:67492871-67492890 Msa0086740:CDS 25.0%
! TTATGGTTGGAATTTCAATT+GGG - chr1_2:67493005-67493024 None:intergenic 25.0%
! TTTATGGTTGGAATTTCAAT+TGG - chr1_2:67493006-67493025 None:intergenic 25.0%
! ATGATATCAATGCATTGTTT+AGG - chr1_2:67493312-67493331 None:intergenic 25.0%
! AATGAAGACTGTAACTATTA+AGG + chr1_2:67493368-67493387 Msa0086740:CDS 25.0%
! CATATAGAGAAGATATCATA+AGG + chr1_2:67493394-67493413 Msa0086740:CDS 25.0%
! AGAAGATATCATAAGGTTTA+GGG + chr1_2:67493401-67493420 Msa0086740:CDS 25.0%
!!! CAGTTTGTTATCTATTGTTT+AGG + chr1_2:67493688-67493707 Msa0086740:three_prime_UTR 25.0%
!! TTTAGGTTCTTGTAATCTTT+AGG + chr1_2:67493705-67493724 Msa0086740:three_prime_UTR 25.0%
!!! TTTTTTGATGACACATAACA+TGG + chr1_2:67493829-67493848 Msa0086740:three_prime_UTR 25.0%
GCAAAGGAAATGAAAACAAA+TGG - chr1_2:67489170-67489189 None:intergenic 30.0%
GATTCAAAAGTGATAAAGCT+TGG - chr1_2:67489215-67489234 None:intergenic 30.0%
AAAAAAAATGTCAGAACCTG+AGG + chr1_2:67489258-67489277 Msa0086740:exon 30.0%
ATCTAGATTTAGAAACACCA+TGG + chr1_2:67489350-67489369 Msa0086740:CDS 30.0%
GAAAACAAAAAAGGTGACAT+GGG - chr1_2:67489406-67489425 None:intergenic 30.0%
TGAAAACAAAAAAGGTGACA+TGG - chr1_2:67489407-67489426 None:intergenic 30.0%
TGCGTTGTTAATTATGTAGA+AGG + chr1_2:67489840-67489859 Msa0086740:intron 30.0%
ATGTAGCATGTACTTGTATA+AGG - chr1_2:67489979-67489998 None:intergenic 30.0%
ACTGGATTATGAAAACTTCA+CGG - chr1_2:67490087-67490106 None:intergenic 30.0%
! CATGTATTTTGCAGTTTATG+TGG + chr1_2:67490128-67490147 Msa0086740:intron 30.0%
!! AACTAAAGCTACTGTTTTTC+AGG + chr1_2:67490168-67490187 Msa0086740:intron 30.0%
AAATTCAATAACTGAGAAGC+CGG + chr1_2:67490197-67490216 Msa0086740:CDS 30.0%
!! ATTTTCTATTGGTGGCAAAA+GGG - chr1_2:67490256-67490275 None:intergenic 30.0%
!! AATTTTCTATTGGTGGCAAA+AGG - chr1_2:67490257-67490276 None:intergenic 30.0%
TTTGCCACCAATAGAAAATT+TGG + chr1_2:67490257-67490276 Msa0086740:CDS 30.0%
TAAAAGAAACTCAACCTCTA+GGG - chr1_2:67490751-67490770 None:intergenic 30.0%
TTAAAAGAAACTCAACCTCT+AGG - chr1_2:67490752-67490771 None:intergenic 30.0%
! GCAATCTATCCTAAGTTTTA+TGG + chr1_2:67490776-67490795 Msa0086740:intron 30.0%
!! AAAAGTTGTTCGAGTTTTGA+TGG + chr1_2:67491416-67491435 Msa0086740:CDS 30.0%
TAAATGAGCATCTACGATAT+AGG - chr1_2:67491486-67491505 None:intergenic 30.0%
ATATCGTAGATGCTCATTTA+TGG + chr1_2:67491486-67491505 Msa0086740:CDS 30.0%
TATCGTAGATGCTCATTTAT+GGG + chr1_2:67491487-67491506 Msa0086740:CDS 30.0%
TTCATTATGCTCTCATGTTT+GGG + chr1_2:67491639-67491658 Msa0086740:CDS 30.0%
CTGTTTCATTGTTGACAATA+TGG - chr1_2:67491786-67491805 None:intergenic 30.0%
ATTATTGAAGCAACTGATGA+AGG + chr1_2:67491866-67491885 Msa0086740:CDS 30.0%
TTGAGCAATAGGAATAGATT+CGG - chr1_2:67491906-67491925 None:intergenic 30.0%
!! TTCTACAACGTTATTTTGCT+GGG + chr1_2:67492125-67492144 Msa0086740:CDS 30.0%
!! TTTACAAATTTGCTGCTATC+TGG + chr1_2:67492336-67492355 Msa0086740:intron 30.0%
CGATTACGTAATACATTCTT+TGG - chr1_2:67492375-67492394 None:intergenic 30.0%
!! TAGCTTTAACACAAACTTCT+TGG + chr1_2:67492473-67492492 Msa0086740:intron 30.0%
TCAGGAAATGAACTAACAAT+TGG - chr1_2:67492688-67492707 None:intergenic 30.0%
AATTCATTCTCTTTCATCTG+AGG - chr1_2:67492769-67492788 None:intergenic 30.0%
CAGATGAAAGAGAATGAATT+TGG + chr1_2:67492769-67492788 Msa0086740:CDS 30.0%
!! GTTTGTTTCTGATACTTTAG+AGG - chr1_2:67492797-67492816 None:intergenic 30.0%
! GTAATGGAAAATCAATTGCT+AGG + chr1_2:67492826-67492845 Msa0086740:CDS 30.0%
CTTGAGAAAGAAGTGATTAA+TGG + chr1_2:67492865-67492884 Msa0086740:CDS 30.0%
!!! TCCTAGTTCTATTCCTTTTT+CGG - chr1_2:67492924-67492943 None:intergenic 30.0%
TATGGTTGGAATTTCAATTG+GGG - chr1_2:67493004-67493023 None:intergenic 30.0%
ATATCAATGCATTGTTTAGG+AGG - chr1_2:67493309-67493328 None:intergenic 30.0%
!!! ATTTCTTTTCTAGCTGCAAA+AGG - chr1_2:67493351-67493370 None:intergenic 30.0%
GAGAAGATATCATAAGGTTT+AGG + chr1_2:67493400-67493419 Msa0086740:CDS 30.0%
TTCCAAAAGATTGAAACTTG+AGG + chr1_2:67493464-67493483 Msa0086740:CDS 30.0%
! AACCTCAAGTTTCAATCTTT+TGG - chr1_2:67493469-67493488 None:intergenic 30.0%
AAAAGATTGAAACTTGAGGT+TGG + chr1_2:67493468-67493487 Msa0086740:CDS 30.0%
CACATTTGATATCAAGTACA+TGG + chr1_2:67493491-67493510 Msa0086740:CDS 30.0%
ATGTATGTTTCAAGATCATC+CGG + chr1_2:67493567-67493586 Msa0086740:CDS 30.0%
CATGACATAACATCAAATCT+TGG + chr1_2:67493618-67493637 Msa0086740:CDS 30.0%
! CTTGTAATCTTTAGGAAGAT+AGG + chr1_2:67493713-67493732 Msa0086740:three_prime_UTR 30.0%
TTTGGATTTCATCCAACATA+TGG - chr1_2:67493901-67493920 None:intergenic 30.0%
GTGTAGAACAATTTCAGCAA+AGG - chr1_2:67489186-67489205 None:intergenic 35.0%
TTTCTCAAGGTTCTGTTTGT+GGG - chr1_2:67489241-67489260 None:intergenic 35.0%
! TTTTCTCAAGGTTCTGTTTG+TGG - chr1_2:67489242-67489261 None:intergenic 35.0%
! AAGTCTTGATTTTCTTCCTC+AGG - chr1_2:67489277-67489296 None:intergenic 35.0%
!! AATGATGTTTTTGTCTTGGG+AGG - chr1_2:67489301-67489320 None:intergenic 35.0%
AGAAGAACATGGTTGTTCTA+TGG + chr1_2:67489321-67489340 Msa0086740:CDS 35.0%
ATAAAGGACATGTGATCCAA+AGG - chr1_2:67489376-67489395 None:intergenic 35.0%
! ACTTTTACTGATGGAGAAGA+TGG + chr1_2:67489460-67489479 Msa0086740:CDS 35.0%
ACATACAAGAGAAGATCTTG+TGG - chr1_2:67489516-67489535 None:intergenic 35.0%
CAGCTGTTCAATTTAGAAGA+GGG - chr1_2:67489901-67489920 None:intergenic 35.0%
TCAGCTGTTCAATTTAGAAG+AGG - chr1_2:67489902-67489921 None:intergenic 35.0%
ATTGAACAGCTGAAGTTTCA+TGG + chr1_2:67489909-67489928 Msa0086740:intron 35.0%
!! TTTTCTATTGGTGGCAAAAG+GGG - chr1_2:67490255-67490274 None:intergenic 35.0%
! CCATCCAAATTTTCTATTGG+TGG - chr1_2:67490264-67490283 None:intergenic 35.0%
CCACCAATAGAAAATTTGGA+TGG + chr1_2:67490261-67490280 Msa0086740:CDS 35.0%
GGATGGATATTGTGTAATCA+AGG + chr1_2:67490278-67490297 Msa0086740:CDS 35.0%
TGATTGAGTCCATTACTATG+TGG - chr1_2:67490435-67490454 None:intergenic 35.0%
TGGACTCAATCAGTATAGAA+CGG + chr1_2:67490443-67490462 Msa0086740:CDS 35.0%
CACAGAAAACATGTACATCA+GGG - chr1_2:67490472-67490491 None:intergenic 35.0%
! ATGTACATGTTTTCTGTGGA+TGG + chr1_2:67490474-67490493 Msa0086740:CDS 35.0%
TGTAATGTTGAGCATGATCT+CGG - chr1_2:67490602-67490621 None:intergenic 35.0%
AAAGATTAACTATGCTCCTG+AGG + chr1_2:67490707-67490726 Msa0086740:CDS 35.0%
!!! TTGCAGATTTTTTCAACCTC+AGG - chr1_2:67490726-67490745 None:intergenic 35.0%
AATCTCTGCCATTGAAAACT+TGG - chr1_2:67490856-67490875 None:intergenic 35.0%
! ATTCCTCAATGATCTGCTTT+TGG + chr1_2:67490900-67490919 Msa0086740:intron 35.0%
AAACCAAAAGCAGATCATTG+AGG - chr1_2:67490906-67490925 None:intergenic 35.0%
AAAATACCTGAGTGAATGGA+TGG - chr1_2:67490969-67490988 None:intergenic 35.0%
GGAAAATACTGGATTCTCAT+TGG + chr1_2:67491108-67491127 Msa0086740:intron 35.0%
CATTGCCAAGTTATATCTGT+GGG - chr1_2:67491240-67491259 None:intergenic 35.0%
GATCTTAGAGATATTGACAG+TGG + chr1_2:67491307-67491326 Msa0086740:CDS 35.0%
!! AGTTTTGATGGTAGTTGCAT+GGG + chr1_2:67491428-67491447 Msa0086740:CDS 35.0%
ATCGTAGATGCTCATTTATG+GGG + chr1_2:67491488-67491507 Msa0086740:CDS 35.0%
! TGAGAGCATAATGAACCAAA+GGG - chr1_2:67491634-67491653 None:intergenic 35.0%
! ATGAGAGCATAATGAACCAA+AGG - chr1_2:67491635-67491654 None:intergenic 35.0%
GTTCATTATGCTCTCATGTT+TGG + chr1_2:67491638-67491657 Msa0086740:CDS 35.0%
TCATGAAATTCAGTAATCCC+AGG - chr1_2:67491743-67491762 None:intergenic 35.0%
TTATTCCCTAAGGTAGACAT+CGG - chr1_2:67492043-67492062 None:intergenic 35.0%
!! GTTCTACAACGTTATTTTGC+TGG + chr1_2:67492124-67492143 Msa0086740:CDS 35.0%
TTTATTAATCTGCTGCTAGC+TGG + chr1_2:67492220-67492239 Msa0086740:intron 35.0%
ACATGCATACTCTACTACAA+TGG + chr1_2:67492289-67492308 Msa0086740:intron 35.0%
AGATACGCTTCATTGTAGTA+GGG - chr1_2:67492522-67492541 None:intergenic 35.0%
ACCTTGTTAATCTTTCGAGA+TGG - chr1_2:67492571-67492590 None:intergenic 35.0%
AACACGTTTGAGCTTAGATA+GGG - chr1_2:67492602-67492621 None:intergenic 35.0%
TAACACGTTTGAGCTTAGAT+AGG - chr1_2:67492603-67492622 None:intergenic 35.0%
!! GCGTTTGATTTGAATTCTCT+TGG + chr1_2:67492649-67492668 Msa0086740:CDS 35.0%
ATGGAAAATCAATTGCTAGG+AGG + chr1_2:67492829-67492848 Msa0086740:CDS 35.0%
AAAATCAATTGCTAGGAGGA+AGG + chr1_2:67492833-67492852 Msa0086740:CDS 35.0%
GACTATTCAGGAAATTGGAA+AGG + chr1_2:67492897-67492916 Msa0086740:CDS 35.0%
AAATTGGAAAGGACCGAAAA+AGG + chr1_2:67492908-67492927 Msa0086740:CDS 35.0%
ACCGAAAAAGGAATAGAACT+AGG + chr1_2:67492920-67492939 Msa0086740:CDS 35.0%
AAAAGGAATAGAACTAGGAG+TGG + chr1_2:67492925-67492944 Msa0086740:CDS 35.0%
ATGGTTGGAATTTCAATTGG+GGG - chr1_2:67493003-67493022 None:intergenic 35.0%
! ATGAACGGATCTTTTATGGT+TGG - chr1_2:67493018-67493037 None:intergenic 35.0%
! TGGAATGAACGGATCTTTTA+TGG - chr1_2:67493022-67493041 None:intergenic 35.0%
TCATTGTTGGATGGAATGAA+CGG - chr1_2:67493033-67493052 None:intergenic 35.0%
ACATGTTGTTCATTGTTGGA+TGG - chr1_2:67493042-67493061 None:intergenic 35.0%
CACAACATGTTGTTCATTGT+TGG - chr1_2:67493046-67493065 None:intergenic 35.0%
ATGAACAACATGTTGTGTTG+AGG + chr1_2:67493049-67493068 Msa0086740:CDS 35.0%
TGAACAACATGTTGTGTTGA+GGG + chr1_2:67493050-67493069 Msa0086740:CDS 35.0%
! GGAGAGTTTAAAGCATTAGT+CGG - chr1_2:67493099-67493118 None:intergenic 35.0%
AAGTTCTGCTATCACATTGT+CGG - chr1_2:67493139-67493158 None:intergenic 35.0%
TCTATTAGCAATCCTCCAAA+CGG - chr1_2:67493168-67493187 None:intergenic 35.0%
! ACATGGACGATGATAATGAA+TGG + chr1_2:67493508-67493527 Msa0086740:CDS 35.0%
! CATGGACGATGATAATGAAT+GGG + chr1_2:67493509-67493528 Msa0086740:CDS 35.0%
GAATTGTTCAGTCCATATGT+TGG + chr1_2:67493886-67493905 Msa0086740:three_prime_UTR 35.0%
TTTAGAAACACCATGGCCTT+TGG + chr1_2:67489357-67489376 Msa0086740:CDS 40.0%
! TGACATGGGATTGGTGATAA+AGG - chr1_2:67489392-67489411 None:intergenic 40.0%
CAAAAAAGGTGACATGGGAT+TGG - chr1_2:67489401-67489420 None:intergenic 40.0%
ATCAACCTTCTTCTCCTCTA+TGG + chr1_2:67489437-67489456 Msa0086740:CDS 40.0%
AAAGTCCATAGAGGAGAAGA+AGG - chr1_2:67489445-67489464 None:intergenic 40.0%
CCATCAGTAAAAGTCCATAG+AGG - chr1_2:67489454-67489473 None:intergenic 40.0%
! CCTCTATGGACTTTTACTGA+TGG + chr1_2:67489451-67489470 Msa0086740:CDS 40.0%
TTGCCTGGTAATTGCTTTCT+TGG + chr1_2:67489946-67489965 Msa0086740:intron 40.0%
TGCCTGGTAATTGCTTTCTT+GGG + chr1_2:67489947-67489966 Msa0086740:intron 40.0%
TAATCCAGTCCAATGTCATG+TGG + chr1_2:67490098-67490117 Msa0086740:intron 40.0%
TGTTTAGCACCACATGACAT+TGG - chr1_2:67490110-67490129 None:intergenic 40.0%
! GTGGACTGAACTGAATGTAT+TGG + chr1_2:67490335-67490354 Msa0086740:CDS 40.0%
!! TGAACTGAATGTATTGGCTC+AGG + chr1_2:67490341-67490360 Msa0086740:CDS 40.0%
!! TGAATGTATTGGCTCAGGTT+TGG + chr1_2:67490346-67490365 Msa0086740:CDS 40.0%
!! GAATGTATTGGCTCAGGTTT+GGG + chr1_2:67490347-67490366 Msa0086740:CDS 40.0%
CGGTATGTACTTACAACTTC+AGG + chr1_2:67490390-67490409 Msa0086740:CDS 40.0%
CTATGTGGATCAAGGACAAA+GGG - chr1_2:67490420-67490439 None:intergenic 40.0%
ACTATGTGGATCAAGGACAA+AGG - chr1_2:67490421-67490440 None:intergenic 40.0%
GTCCTTGATCCACATAGTAA+TGG + chr1_2:67490423-67490442 Msa0086740:CDS 40.0%
GTCCATTACTATGTGGATCA+AGG - chr1_2:67490428-67490447 None:intergenic 40.0%
CCACAGAAAACATGTACATC+AGG - chr1_2:67490473-67490492 None:intergenic 40.0%
! CCTGATGTACATGTTTTCTG+TGG + chr1_2:67490470-67490489 Msa0086740:CDS 40.0%
TTCAGCAGAAACTACCAGAA+TGG + chr1_2:67490535-67490554 Msa0086740:CDS 40.0%
TTCAAATACAGGCAAAGCCA+AGG - chr1_2:67490637-67490656 None:intergenic 40.0%
TGCAACGAAGGTTCAAATAC+AGG - chr1_2:67490648-67490667 None:intergenic 40.0%
AAAAATCTGCAAAGCCCTAG+AGG + chr1_2:67490734-67490753 Msa0086740:CDS 40.0%
! TTTGAGGAGCTCAGAGTTTT+TGG + chr1_2:67490942-67490961 Msa0086740:CDS 40.0%
CAAGTGTGAATCATTGTCAC+TGG - chr1_2:67491049-67491068 None:intergenic 40.0%
ACTGGATTCTCATTGGATGT+TGG + chr1_2:67491115-67491134 Msa0086740:intron 40.0%
TTATATCTGTGGGAATCCAG+GGG - chr1_2:67491230-67491249 None:intergenic 40.0%
GTTATATCTGTGGGAATCCA+GGG - chr1_2:67491231-67491250 None:intergenic 40.0%
AGTTATATCTGTGGGAATCC+AGG - chr1_2:67491232-67491251 None:intergenic 40.0%
GGATTCCCACAGATATAACT+TGG + chr1_2:67491232-67491251 Msa0086740:intron 40.0%
GCATTGCCAAGTTATATCTG+TGG - chr1_2:67491241-67491260 None:intergenic 40.0%
! AGGGCGTCAAAATGCATTAT+CGG + chr1_2:67491283-67491302 Msa0086740:CDS 40.0%
ATTTACCTCTAGCCCAAACA+TGG + chr1_2:67491345-67491364 Msa0086740:CDS 40.0%
TTTACCTCTAGCCCAAACAT+GGG + chr1_2:67491346-67491365 Msa0086740:CDS 40.0%
AAAACACTCCTATGCCTACA+GGG - chr1_2:67491374-67491393 None:intergenic 40.0%
!! GAGTTTTGATGGTAGTTGCA+TGG + chr1_2:67491427-67491446 Msa0086740:CDS 40.0%
!! GTTTTGATGGTAGTTGCATG+GGG + chr1_2:67491429-67491448 Msa0086740:CDS 40.0%
GTCGAACATCACTTACAACA+TGG + chr1_2:67491527-67491546 Msa0086740:CDS 40.0%
CATCACTTACAACATGGTCA+AGG + chr1_2:67491533-67491552 Msa0086740:CDS 40.0%
GTAATCTGTCTTGCAGAACT+TGG - chr1_2:67491612-67491631 None:intergenic 40.0%
!! GCTGTTTTGCAATCTGTTTG+CGG + chr1_2:67491669-67491688 Msa0086740:CDS 40.0%
! TGTTTGCGGAGTTTTCATAC+AGG + chr1_2:67491683-67491702 Msa0086740:CDS 40.0%
!!! TTAGAGTTTTTTCTGCCTCC+TGG + chr1_2:67491722-67491741 Msa0086740:CDS 40.0%
!!! TAGAGTTTTTTCTGCCTCCT+GGG + chr1_2:67491723-67491742 Msa0086740:CDS 40.0%
TGAAATTCAGTAATCCCAGG+AGG - chr1_2:67491740-67491759 None:intergenic 40.0%
! TTTTCACCATGAACCTCTGA+TGG - chr1_2:67492001-67492020 None:intergenic 40.0%
GAGGTTCATGGTGAAAATGT+AGG + chr1_2:67492004-67492023 Msa0086740:CDS 40.0%
TTGATCCGATGTCTACCTTA+GGG + chr1_2:67492035-67492054 Msa0086740:CDS 40.0%
ACATAAAGAAACCCTCAGAG+AGG + chr1_2:67492065-67492084 Msa0086740:CDS 40.0%
! CTACAATGGAGTGCATCTTT+TGG + chr1_2:67492303-67492322 Msa0086740:intron 40.0%
CAGATACGCTTCATTGTAGT+AGG - chr1_2:67492523-67492542 None:intergenic 40.0%
GCCATCTCGAAAGATTAACA+AGG + chr1_2:67492567-67492586 Msa0086740:CDS 40.0%
GTTTGAGCTTAGATAGGGAA+CGG - chr1_2:67492597-67492616 None:intergenic 40.0%
! CGTGTTATTGAATCTGTCCA+AGG + chr1_2:67492616-67492635 Msa0086740:CDS 40.0%
! TATTGCTTAACGAGCATTGC+TGG - chr1_2:67492735-67492754 None:intergenic 40.0%
AGCAATGCTCGTTAAGCAAT+AGG + chr1_2:67492734-67492753 Msa0086740:CDS 40.0%
GAACAACATGTTGTGTTGAG+GGG + chr1_2:67493051-67493070 Msa0086740:CDS 40.0%
AGTTCTGCTATCACATTGTC+GGG - chr1_2:67493138-67493157 None:intergenic 40.0%
GTTTGGAGGATTGCTAATAG+AGG + chr1_2:67493167-67493186 Msa0086740:CDS 40.0%
AAGTTGTTACCACAAGCTTC+TGG - chr1_2:67493264-67493283 None:intergenic 40.0%
! TTTAGGGTCTCTTTGAACTG+TGG + chr1_2:67493417-67493436 Msa0086740:CDS 40.0%
AAACATACATGCACTCCTGA+AGG - chr1_2:67493557-67493576 None:intergenic 40.0%
TATGTTTCAAGATCATCCGG+AGG + chr1_2:67493570-67493589 Msa0086740:CDS 40.0%
! AAGCAACATAATCCGGGTTT+TGG + chr1_2:67493593-67493612 Msa0086740:CDS 40.0%
TTATGTCATGCACCAAAACC+CGG - chr1_2:67493608-67493627 None:intergenic 40.0%
GCTGAAGTTTCATGGCTTCA+TGG + chr1_2:67489917-67489936 Msa0086740:intron 45.0%
AGCCCAAGAAAGCAATTACC+AGG - chr1_2:67489952-67489971 None:intergenic 45.0%
TTCAATAACTGAGAAGCCGG+TGG + chr1_2:67490200-67490219 Msa0086740:CDS 45.0%
TTGTTGTCGTCTTTCTCCAC+CGG - chr1_2:67490219-67490238 None:intergenic 45.0%
CGCTTCGTTACTTCAAAGAG+TGG + chr1_2:67490316-67490335 Msa0086740:CDS 45.0%
CACCTGTGAGGAATGGTAAT+CGG + chr1_2:67490370-67490389 Msa0086740:CDS 45.0%
! TACCGATTACCATTCCTCAC+AGG - chr1_2:67490375-67490394 None:intergenic 45.0%
TTCTGCTGAAAAACTCGACC+AGG - chr1_2:67490525-67490544 None:intergenic 45.0%
AGAACATTGGGAGACCATTC+TGG - chr1_2:67490552-67490571 None:intergenic 45.0%
AATGTTGAGCATGATCTCGG+CGG - chr1_2:67490599-67490618 None:intergenic 45.0%
GCTCAACATTACAACGTTCG+TGG + chr1_2:67490609-67490628 Msa0086740:CDS 45.0%
TTACAACGTTCGTGGAACCT+TGG + chr1_2:67490617-67490636 Msa0086740:CDS 45.0%
CCAATACATGACTGCAACGA+AGG - chr1_2:67490660-67490679 None:intergenic 45.0%
CCTTCGTTGCAGTCATGTAT+TGG + chr1_2:67490657-67490676 Msa0086740:CDS 45.0%
!!! TCTGCTTTTGGTTTCCTTGC+AGG + chr1_2:67490912-67490931 Msa0086740:intron 45.0%
CCTCAAATTTACTGCCTGCA+AGG - chr1_2:67490929-67490948 None:intergenic 45.0%
CCTTGCAGGCAGTAAATTTG+AGG + chr1_2:67490926-67490945 Msa0086740:intron 45.0%
TTTGGACCATCCATTCACTC+AGG + chr1_2:67490960-67490979 Msa0086740:CDS 45.0%
ATTGTTCTATCGCTTACCCC+TGG + chr1_2:67491211-67491230 Msa0086740:intron 45.0%
CAAAACACTCCTATGCCTAC+AGG - chr1_2:67491375-67491394 None:intergenic 45.0%
!!! CTGTAGGCATAGGAGTGTTT+TGG + chr1_2:67491373-67491392 Msa0086740:CDS 45.0%
!!! CATAGGAGTGTTTTGGCTCA+TGG + chr1_2:67491380-67491399 Msa0086740:CDS 45.0%
AGTGTGCATGTCTACAACTG+AGG + chr1_2:67491454-67491473 Msa0086740:CDS 45.0%
!! ACAACATGGTCAAGGTGTTG+CGG + chr1_2:67491541-67491560 Msa0086740:CDS 45.0%
CTGCAAGACAGATTACCCTT+TGG + chr1_2:67491616-67491635 Msa0086740:CDS 45.0%
TCATGAACAGAAGACGCTGT+TGG + chr1_2:67491757-67491776 Msa0086740:CDS 45.0%
CATGAACAGAAGACGCTGTT+GGG + chr1_2:67491758-67491777 Msa0086740:CDS 45.0%
CAGAGTCTTAACATTGCTGC+TGG + chr1_2:67491812-67491831 Msa0086740:CDS 45.0%
! GGTGTTGAACTCGAGGAAAA+TGG + chr1_2:67491833-67491852 Msa0086740:CDS 45.0%
! TCCATATTTGGTGAGGCATC+GGG - chr1_2:67491950-67491969 None:intergenic 45.0%
! CTCCATATTTGGTGAGGCAT+CGG - chr1_2:67491951-67491970 None:intergenic 45.0%
GTTGATCCGATGTCTACCTT+AGG + chr1_2:67492034-67492053 Msa0086740:CDS 45.0%
TTTCCACGTTTCCTCTCTGA+GGG - chr1_2:67492079-67492098 None:intergenic 45.0%
! TTTTCCACGTTTCCTCTCTG+AGG - chr1_2:67492080-67492099 None:intergenic 45.0%
AAAGATGCTGCAAAGAGCCT+TGG + chr1_2:67492154-67492173 Msa0086740:CDS 45.0%
CTACAATGAAGCGTATCTGC+AGG + chr1_2:67492524-67492543 Msa0086740:CDS 45.0%
TTATTCGGAGTAGAAGGCTC+AGG - chr1_2:67492706-67492725 None:intergenic 45.0%
CTGGACTTATTCGGAGTAGA+AGG - chr1_2:67492712-67492731 None:intergenic 45.0%
! CATTGCTGGCTGGACTTATT+CGG - chr1_2:67492721-67492740 None:intergenic 45.0%
! TCTTTCATCTGAGGCTCTGA+CGG - chr1_2:67492760-67492779 None:intergenic 45.0%
! TGGTAAAGGCGTGACTATTC+AGG + chr1_2:67492885-67492904 Msa0086740:CDS 45.0%
GGCGTGACTATTCAGGAAAT+TGG + chr1_2:67492892-67492911 Msa0086740:CDS 45.0%
AGCACAAACCCTACTTCTCA+TGG + chr1_2:67492961-67492980 Msa0086740:CDS 45.0%
GGCATGAACCATGAGAAGTA+GGG - chr1_2:67492972-67492991 None:intergenic 45.0%
TGGCATGAACCATGAGAAGT+AGG - chr1_2:67492973-67492992 None:intergenic 45.0%
ACTTCTCATGGTTCATGCCA+CGG + chr1_2:67492973-67492992 Msa0086740:CDS 45.0%
CTATCACATTGTCGGGCATA+CGG - chr1_2:67493131-67493150 None:intergenic 45.0%
AAATGGCCTCAGCTACTGAA+GGG - chr1_2:67493227-67493246 None:intergenic 45.0%
AAAATGGCCTCAGCTACTGA+AGG - chr1_2:67493228-67493247 None:intergenic 45.0%
! TTCAGTAGCTGAGGCCATTT+TGG + chr1_2:67493227-67493246 Msa0086740:CDS 45.0%
GCTTGTGGTAACAACTTTCC+AGG + chr1_2:67493267-67493286 Msa0086740:CDS 45.0%
CTTTCCAGGTTCATCACATC+TGG + chr1_2:67493281-67493300 Msa0086740:CDS 45.0%
CTCTTTGAACTGTGGCATTG+TGG + chr1_2:67493425-67493444 Msa0086740:CDS 45.0%
GACATGTGATCCAAAGGCCA+TGG - chr1_2:67489370-67489389 None:intergenic 50.0%
AGCACCACATGACATTGGAC+TGG - chr1_2:67490105-67490124 None:intergenic 50.0%
! TCTATTGGTGGCAAAAGGGG+TGG - chr1_2:67490252-67490271 None:intergenic 50.0%
TCTGTGGATGGAGAGAACGA+TGG + chr1_2:67490486-67490505 Msa0086740:CDS 50.0%
GGAGAGAACGATGGAACTCT+AGG + chr1_2:67490495-67490514 Msa0086740:CDS 50.0%
!! GATGGAACTCTAGGACTTCC+TGG + chr1_2:67490504-67490523 Msa0086740:CDS 50.0%
ATGTTGAGCATGATCTCGGC+GGG - chr1_2:67490598-67490617 None:intergenic 50.0%
CCTACAGGGAACCCATGTTT+GGG - chr1_2:67491360-67491379 None:intergenic 50.0%
!!! AGGAGTGTTTTGGCTCATGG+TGG + chr1_2:67491383-67491402 Msa0086740:CDS 50.0%
!!! AGTGTTTTGGCTCATGGTGG+CGG + chr1_2:67491386-67491405 Msa0086740:CDS 50.0%
GTGCATGTCTACAACTGAGG+CGG + chr1_2:67491457-67491476 Msa0086740:CDS 50.0%
!! CAACATGGTCAAGGTGTTGC+GGG + chr1_2:67491542-67491561 Msa0086740:CDS 50.0%
!! AACATGGTCAAGGTGTTGCG+GGG + chr1_2:67491543-67491562 Msa0086740:CDS 50.0%
ACCCGATGCCTCACCAAATA+TGG + chr1_2:67491946-67491965 Msa0086740:CDS 50.0%
CGATGCCTCACCAAATATGG+AGG + chr1_2:67491949-67491968 Msa0086740:CDS 50.0%
TGCCTCACCAAATATGGAGG+AGG + chr1_2:67491952-67491971 Msa0086740:CDS 50.0%
! CTCCTCCTCCATATTTGGTG+AGG - chr1_2:67491957-67491976 None:intergenic 50.0%
CTCACCAAATATGGAGGAGG+AGG + chr1_2:67491955-67491974 Msa0086740:CDS 50.0%
ACCAAATATGGAGGAGGAGG+AGG + chr1_2:67491958-67491977 Msa0086740:CDS 50.0%
TCCTCCTCCTCCTCCATATT+TGG - chr1_2:67491962-67491981 None:intergenic 50.0%
AAATATGGAGGAGGAGGAGG+AGG + chr1_2:67491961-67491980 Msa0086740:CDS 50.0%
AATATGGAGGAGGAGGAGGA+GGG + chr1_2:67491962-67491981 Msa0086740:CDS 50.0%
AGTACCACAGGATCCATCAG+AGG + chr1_2:67491985-67492004 Msa0086740:CDS 50.0%
! TGAACCTCTGATGGATCCTG+TGG - chr1_2:67491992-67492011 None:intergenic 50.0%
CAGGATCCATCAGAGGTTCA+TGG + chr1_2:67491992-67492011 Msa0086740:CDS 50.0%
AAACCCTCAGAGAGGAAACG+TGG + chr1_2:67492073-67492092 Msa0086740:CDS 50.0%
AGAGTATGAACGTACCGCCA+AGG - chr1_2:67492174-67492193 None:intergenic 50.0%
TTTCAATTGGGGGACTACCG+TGG - chr1_2:67492993-67493012 None:intergenic 50.0%
GCAGAACTTCAAGAGCCGTT+TGG + chr1_2:67493150-67493169 Msa0086740:CDS 50.0%
GAACTTCAAGAGCCGTTTGG+AGG + chr1_2:67493153-67493172 Msa0086740:CDS 50.0%
GGATTGCTAATAGAGGACGC+TGG + chr1_2:67493174-67493193 Msa0086740:CDS 50.0%
TTTGTGCCCTTCAGTAGCTG+AGG + chr1_2:67493218-67493237 Msa0086740:CDS 50.0%
!! AGTAGCTGAGGCCATTTTGG+AGG + chr1_2:67493230-67493249 Msa0086740:CDS 50.0%
!! TGAGGCCATTTTGGAGGATC+TGG + chr1_2:67493236-67493255 Msa0086740:CDS 50.0%
TGGAGCCAGATCCTCCAAAA+TGG - chr1_2:67493244-67493263 None:intergenic 50.0%
AGCATGTGATGCAGACCTTC+AGG + chr1_2:67493539-67493558 Msa0086740:CDS 50.0%
! CCGGATTATGTTGCTTCCTC+CGG - chr1_2:67493589-67493608 None:intergenic 50.0%
CCGGAGGAAGCAACATAATC+CGG + chr1_2:67493586-67493605 Msa0086740:CDS 50.0%
CGGAGGAAGCAACATAATCC+GGG + chr1_2:67493587-67493606 Msa0086740:CDS 50.0%
GAAGCTCCTGTGAGAGTTCA+GGG + chr1_2:67493640-67493659 Msa0086740:CDS 50.0%
AAGCTCCTGTGAGAGTTCAG+GGG + chr1_2:67493641-67493660 Msa0086740:CDS 50.0%
GCTTCATGGCTAGAGTTGCC+TGG + chr1_2:67489931-67489950 Msa0086740:intron 55.0%
GTTTGGGCACCTGTGAGGAA+TGG + chr1_2:67490363-67490382 Msa0086740:CDS 55.0%
TGTTGAGCATGATCTCGGCG+GGG - chr1_2:67490597-67490616 None:intergenic 55.0%
! GGAACCCATGTTTGGGCTAG+AGG - chr1_2:67491353-67491372 None:intergenic 55.0%
CCCAAACATGGGTTCCCTGT+AGG + chr1_2:67491357-67491376 Msa0086740:CDS 55.0%
GCCTACAGGGAACCCATGTT+TGG - chr1_2:67491361-67491380 None:intergenic 55.0%
CATGGGTTCCCTGTAGGCAT+AGG + chr1_2:67491363-67491382 Msa0086740:CDS 55.0%
! TGCTGCTGGTGTTGAACTCG+AGG + chr1_2:67491826-67491845 Msa0086740:CDS 55.0%
!! TTTGGTGAGGCATCGGGTCT+AGG - chr1_2:67491944-67491963 None:intergenic 55.0%
GATGCTGCAAAGAGCCTTGG+CGG + chr1_2:67492157-67492176 Msa0086740:CDS 55.0%
AAGCGTATCTGCAGGCAGCA+TGG + chr1_2:67492532-67492551 Msa0086740:CDS 55.0%
AGCGTATCTGCAGGCAGCAT+GGG + chr1_2:67492533-67492552 Msa0086740:CDS 55.0%
GGCAGCATGGGATATCTCGT+TGG + chr1_2:67492545-67492564 Msa0086740:CDS 55.0%
!! GAATCTGTCCAAGGCGCTGA+AGG + chr1_2:67492625-67492644 Msa0086740:CDS 55.0%
! GCTTAACGAGCATTGCTGGC+TGG - chr1_2:67492731-67492750 None:intergenic 55.0%
TCGGGCATACGGTGAGAAGT+TGG - chr1_2:67493120-67493139 None:intergenic 55.0%
! GATCTGGCTCCAGAAGCTTG+TGG + chr1_2:67493252-67493271 Msa0086740:CDS 55.0%
GGAGCCAGATGTGATGAACC+TGG - chr1_2:67493288-67493307 None:intergenic 55.0%
GGAAGCTCCTGTGAGAGTTC+AGG + chr1_2:67493639-67493658 Msa0086740:CDS 55.0%
TCACTCCCCTGAACTCTCAC+AGG - chr1_2:67493649-67493668 None:intergenic 55.0%
CTCAGGTTTGGGCACCTGTG+AGG + chr1_2:67490358-67490377 Msa0086740:CDS 60.0%
!! ATGGTCAAGGTGTTGCGGGG+AGG + chr1_2:67491546-67491565 Msa0086740:CDS 60.0%
!! TGGTCAAGGTGTTGCGGGGA+GGG + chr1_2:67491547-67491566 Msa0086740:CDS 60.0%
CAAACGCTCCTTCAGCGCCT+TGG - chr1_2:67492636-67492655 None:intergenic 60.0%
GTTGAGGGGATCGCCAGAGT+CGG + chr1_2:67493065-67493084 Msa0086740:CDS 60.0%
TTGAGGGGATCGCCAGAGTC+GGG + chr1_2:67493066-67493085 Msa0086740:CDS 60.0%
!! GGTGAGGCATCGGGTCTAGG+TGG - chr1_2:67491941-67491960 None:intergenic 65.0%
!! GGAGGAGGAGGGAGTACCAC+AGG + chr1_2:67491973-67491992 Msa0086740:CDS 65.0%
GTCGGCTGCATTCCCGACTC+TGG - chr1_2:67493081-67493100 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67489129 67493920 67489129 ID=Msa0086740;Name=Msa0086740
chr1_2 mRNA 67489129 67493920 67489129 ID=Msa0086740-mRNA-1;Parent=Msa0086740;Name=Msa0086740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|1|1|1|1|1|5|252|979
chr1_2 exon 67489129 67489529 67489129 ID=Msa0086740-mRNA-1:exon:22908;Parent=Msa0086740-mRNA-1
chr1_2 exon 67490190 67490755 67490190 ID=Msa0086740-mRNA-1:exon:22909;Parent=Msa0086740-mRNA-1
chr1_2 exon 67490934 67490981 67490934 ID=Msa0086740-mRNA-1:exon:22910;Parent=Msa0086740-mRNA-1
chr1_2 exon 67491272 67492178 67491272 ID=Msa0086740-mRNA-1:exon:22911;Parent=Msa0086740-mRNA-1
chr1_2 exon 67492515 67493920 67492515 ID=Msa0086740-mRNA-1:exon:22912;Parent=Msa0086740-mRNA-1
chr1_2 five_prime_UTR 67489129 67489264 67489129 ID=Msa0086740-mRNA-1:five_prime_utr;Parent=Msa0086740-mRNA-1
chr1_2 CDS 67489265 67489529 67489265 ID=Msa0086740-mRNA-1:cds;Parent=Msa0086740-mRNA-1
chr1_2 CDS 67490190 67490755 67490190 ID=Msa0086740-mRNA-1:cds;Parent=Msa0086740-mRNA-1
chr1_2 CDS 67490934 67490981 67490934 ID=Msa0086740-mRNA-1:cds;Parent=Msa0086740-mRNA-1
chr1_2 CDS 67491272 67492178 67491272 ID=Msa0086740-mRNA-1:cds;Parent=Msa0086740-mRNA-1
chr1_2 CDS 67492515 67493668 67492515 ID=Msa0086740-mRNA-1:cds;Parent=Msa0086740-mRNA-1
chr1_2 three_prime_UTR 67493669 67493920 67493669 ID=Msa0086740-mRNA-1:three_prime_utr;Parent=Msa0086740-mRNA-1
Gene Sequence

>Msa0086740

ATGTCAGAACCTGAGGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACACCATGGCCTTTGGATCACATGTCCTTTATCACCAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGGCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTCAAAGAGTGGACTGAACTGAATGTATTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACGGTTTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATTGGTGTGATAGAGTTGATAATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTGTGCATGTCTACAACTGAGGCGGCAGCCTATATCGTAGATGCTCATTTATGGGGTTTCAGAGAAGCATGTGTCGAACATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGCGTTTTTGTCTCAAAACATGTGCTTCTGCACAAACATTACCAAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATTACTGAATTTCATGAACAGAAGACGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAGGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCATGGTGAAAATGTAGGCAGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCCTATCTAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGTAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAATGCTCGTTAAGCAATAGGCCGTCAGAGCCTCAGATGAAAGAGAATGAATTTGGTGCCTCTAAAGTATCAGAAACAAACATACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTAAAGGCGTGACTATTCAGGAAATTGGAAAGGACCGAAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCCGTTCATTCCATCCAACAATGAACAACATGTTGTGTTGAGGGGATCGCCAGAGTCGGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTTCTCACCGTATGCCCGACAATGTGATAGCAGAACTTCAAGAGCCGTTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGATTTGAGAAATTTGTGCCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGTAACAACTTTCCAGGTTCATCACATCTGGCTCCTCCTAAACAATGCATTGATATCATTAATAATTCAGTGACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAAAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGACGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATGTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACATCAAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA
Protein sequence

>Msa0086740

MSEPEEENQDFPPKTKTSLEEHGCSMDFDLDLETPWPLDHMSFITNPMSPFLFSNISDQPSSPLWTFTDGEDGKLAASAFSDCHKIFSCDSNSITEKPVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMCFCTNITKFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEEEEEGVPQDPSEVHGENVGRSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSSQQCSLSNRPSEPQMKENEFGASKVSETNIQIVMENQLLGGRKHSLEKEVINGKGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDPFIPSNNEQHVVLRGSPESGMQPTNALNSPTSHRMPDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGNNFPGSSHLAPPKQCIDIINNSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE*